Query 036521
Match_columns 602
No_of_seqs 550 out of 4802
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:53:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2907 Predicted NAD/FAD-bind 100.0 4.6E-55 9.9E-60 427.2 25.5 339 1-352 70-435 (447)
2 PRK11705 cyclopropane fatty ac 100.0 3.5E-33 7.5E-38 293.9 21.9 176 398-594 35-211 (383)
3 COG2230 Cfa Cyclopropane fatty 100.0 3.2E-30 7E-35 253.8 11.8 118 484-601 6-123 (283)
4 PF02353 CMAS: Mycolic acid cy 100.0 6E-29 1.3E-33 249.4 10.5 112 490-601 2-113 (273)
5 TIGR00562 proto_IX_ox protopor 99.9 5.5E-21 1.2E-25 209.0 24.5 273 63-339 135-458 (462)
6 PRK12416 protoporphyrinogen ox 99.9 1.1E-20 2.3E-25 206.7 24.4 272 62-339 143-459 (463)
7 PLN02576 protoporphyrinogen ox 99.9 3.3E-20 7.1E-25 204.6 22.2 274 62-340 143-486 (496)
8 COG1232 HemY Protoporphyrinoge 99.8 2.9E-19 6.2E-24 188.9 20.6 269 62-338 132-443 (444)
9 PRK11883 protoporphyrinogen ox 99.8 1.3E-17 2.7E-22 181.8 28.5 271 62-338 138-449 (451)
10 TIGR03467 HpnE squalene-associ 99.8 1.4E-17 3.1E-22 179.4 27.1 268 61-338 127-418 (419)
11 PLN02487 zeta-carotene desatur 99.8 8.2E-18 1.8E-22 185.2 21.9 273 62-340 227-552 (569)
12 TIGR02731 phytoene_desat phyto 99.8 6.9E-17 1.5E-21 176.1 22.9 269 61-337 144-452 (453)
13 TIGR02732 zeta_caro_desat caro 99.8 1.3E-17 2.8E-22 182.1 16.6 271 62-338 151-474 (474)
14 PLN02612 phytoene desaturase 99.8 3.1E-17 6.8E-22 182.5 20.0 160 61-225 239-403 (567)
15 KOG1276 Protoporphyrinogen oxi 99.7 1.2E-16 2.6E-21 162.2 19.6 273 60-338 151-490 (491)
16 COG3380 Predicted NAD/FAD-depe 99.7 1.2E-18 2.5E-23 167.0 4.1 200 127-339 101-329 (331)
17 PRK07233 hypothetical protein; 99.7 2.8E-15 6.1E-20 162.4 29.7 271 61-339 128-429 (434)
18 PRK07208 hypothetical protein; 99.7 1.5E-15 3.2E-20 167.0 24.5 274 63-340 131-460 (479)
19 PLN02529 lysine-specific histo 99.6 3.2E-14 6.8E-19 160.1 23.1 154 62-228 286-449 (738)
20 PLN02268 probable polyamine ox 99.6 2.1E-14 4.4E-19 155.9 20.4 257 62-339 131-432 (435)
21 PLN02244 tocopherol O-methyltr 99.6 7E-15 1.5E-19 153.5 13.4 110 489-600 52-168 (340)
22 PLN02328 lysine-specific histo 99.5 7.5E-12 1.6E-16 141.7 24.2 208 124-340 427-678 (808)
23 PLN03000 amine oxidase 99.5 4.7E-12 1E-16 143.2 22.2 211 124-341 371-623 (881)
24 PF01593 Amino_oxidase: Flavin 99.5 2E-14 4.4E-19 154.6 2.8 272 64-338 142-450 (450)
25 PLN02568 polyamine oxidase 99.4 4.1E-12 8.9E-17 140.2 16.2 160 64-227 160-341 (539)
26 PLN02976 amine oxidase 99.4 1.1E-11 2.4E-16 143.9 18.7 208 125-339 927-1184(1713)
27 PLN02676 polyamine oxidase 99.4 1.9E-11 4.1E-16 133.9 18.3 209 130-340 220-472 (487)
28 COG1231 Monoamine oxidase [Ami 99.4 3.2E-12 6.9E-17 132.7 10.8 100 124-226 199-300 (450)
29 COG2226 UbiE Methylase involve 99.2 1.6E-11 3.5E-16 119.7 7.6 89 490-599 12-101 (238)
30 PF01209 Ubie_methyltran: ubiE 99.1 6.6E-11 1.4E-15 116.5 6.6 88 491-599 9-98 (233)
31 TIGR02752 MenG_heptapren 2-hep 99.0 1.7E-09 3.6E-14 107.1 8.8 60 540-599 35-96 (231)
32 PF12847 Methyltransf_18: Meth 99.0 1.5E-09 3.2E-14 94.4 7.4 51 550-600 1-52 (112)
33 PLN02233 ubiquinone biosynthes 98.9 3.8E-09 8.3E-14 106.3 8.3 54 541-594 64-119 (261)
34 PRK05785 hypothetical protein; 98.9 4.7E-09 1E-13 103.3 7.3 43 550-592 51-93 (226)
35 PRK07580 Mg-protoporphyrin IX 98.8 1.5E-08 3.2E-13 100.1 9.0 104 489-599 4-111 (230)
36 KOG1540 Ubiquinone biosynthesi 98.8 1.8E-08 3.8E-13 96.7 8.6 89 492-601 63-158 (296)
37 PLN02585 magnesium protoporphy 98.8 2.8E-08 6E-13 102.1 10.6 99 492-596 87-189 (315)
38 TIGR02469 CbiT precorrin-6Y C5 98.8 2.9E-08 6.4E-13 87.6 9.2 63 537-599 6-69 (124)
39 COG2227 UbiG 2-polyprenyl-3-me 98.8 8.7E-09 1.9E-13 98.9 6.1 50 549-599 58-107 (243)
40 TIGR02733 desat_CrtD C-3',4' d 98.8 1.3E-07 2.9E-12 104.3 16.1 144 64-219 169-324 (492)
41 PRK11207 tellurite resistance 98.8 2E-08 4.3E-13 96.8 8.2 58 541-599 21-78 (197)
42 PRK11036 putative S-adenosyl-L 98.8 4.3E-08 9.3E-13 98.5 10.7 62 536-599 31-92 (255)
43 PRK00107 gidB 16S rRNA methylt 98.8 3.4E-08 7.4E-13 93.9 9.3 52 548-599 43-95 (187)
44 TIGR00477 tehB tellurite resis 98.7 2.3E-08 4.9E-13 96.2 8.1 58 541-599 21-78 (195)
45 TIGR02730 carot_isom carotene 98.7 5E-06 1.1E-10 91.8 25.2 141 64-215 169-313 (493)
46 PF03848 TehB: Tellurite resis 98.7 5.8E-08 1.3E-12 91.9 8.1 57 542-599 22-78 (192)
47 PRK13944 protein-L-isoaspartat 98.7 8.7E-08 1.9E-12 93.0 9.4 62 538-599 60-123 (205)
48 TIGR00080 pimt protein-L-isoas 98.7 8E-08 1.7E-12 94.0 9.2 63 537-599 64-128 (215)
49 PRK07402 precorrin-6B methylas 98.7 9.5E-08 2.1E-12 92.0 9.4 63 537-599 27-90 (196)
50 PRK00517 prmA ribosomal protei 98.6 5.7E-08 1.2E-12 97.3 7.8 83 506-599 85-168 (250)
51 PRK08287 cobalt-precorrin-6Y C 98.6 1.1E-07 2.3E-12 91.0 9.3 61 539-599 20-81 (187)
52 PRK10258 biotin biosynthesis p 98.6 9.5E-08 2E-12 95.8 9.3 59 535-594 27-85 (251)
53 TIGR02021 BchM-ChlM magnesium 98.6 1.3E-07 2.8E-12 92.8 9.9 62 536-598 39-102 (219)
54 PTZ00098 phosphoethanolamine N 98.6 1E-07 2.2E-12 96.2 9.3 81 502-595 16-97 (263)
55 PF06325 PrmA: Ribosomal prote 98.6 6E-08 1.3E-12 98.3 7.6 81 510-601 131-212 (295)
56 PF13847 Methyltransf_31: Meth 98.6 7.2E-08 1.6E-12 88.8 7.3 51 549-599 2-54 (152)
57 PRK13942 protein-L-isoaspartat 98.6 1.2E-07 2.6E-12 92.4 9.0 64 536-599 62-127 (212)
58 PLN02396 hexaprenyldihydroxybe 98.6 1.7E-07 3.7E-12 96.6 10.5 48 549-597 130-177 (322)
59 TIGR00406 prmA ribosomal prote 98.6 1.7E-07 3.8E-12 95.7 9.5 83 508-600 127-209 (288)
60 TIGR00138 gidB 16S rRNA methyl 98.6 2.1E-07 4.6E-12 88.2 9.0 50 550-599 42-92 (181)
61 PRK15451 tRNA cmo(5)U34 methyl 98.6 2.3E-07 4.9E-12 92.8 9.7 52 548-599 54-108 (247)
62 KOG1270 Methyltransferases [Co 98.6 5.6E-08 1.2E-12 94.0 4.6 44 551-595 90-133 (282)
63 PRK01683 trans-aconitate 2-met 98.6 1.7E-07 3.6E-12 94.4 8.2 61 534-594 15-76 (258)
64 PRK14103 trans-aconitate 2-met 98.5 1.5E-07 3.2E-12 94.6 7.6 57 536-592 15-72 (255)
65 PRK12335 tellurite resistance 98.5 1.9E-07 4.1E-12 95.5 8.1 49 550-599 120-168 (287)
66 PRK00377 cbiT cobalt-precorrin 98.5 3.5E-07 7.5E-12 88.3 9.4 59 541-599 31-91 (198)
67 TIGR03587 Pse_Me-ase pseudamin 98.5 3.4E-07 7.4E-12 88.5 9.0 63 529-593 24-87 (204)
68 COG2242 CobL Precorrin-6B meth 98.5 5E-07 1.1E-11 83.9 9.1 64 537-600 21-85 (187)
69 PLN02336 phosphoethanolamine N 98.5 4.4E-07 9.6E-12 99.7 9.5 56 539-594 255-310 (475)
70 PRK13168 rumA 23S rRNA m(5)U19 98.5 4.3E-07 9.2E-12 98.6 8.9 82 514-599 264-345 (443)
71 PRK00216 ubiE ubiquinone/menaq 98.4 5.5E-07 1.2E-11 89.2 8.6 59 540-598 41-101 (239)
72 smart00650 rADc Ribosomal RNA 98.4 5.5E-07 1.2E-11 84.5 7.6 55 540-595 3-57 (169)
73 PRK00274 ksgA 16S ribosomal RN 98.4 5E-07 1.1E-11 91.6 7.6 57 537-594 29-85 (272)
74 COG2264 PrmA Ribosomal protein 98.4 9.1E-07 2E-11 88.9 9.3 78 511-599 133-211 (300)
75 TIGR00740 methyltransferase, p 98.4 5.8E-07 1.3E-11 89.4 7.5 51 548-598 51-104 (239)
76 KOG1541 Predicted protein carb 98.4 3.6E-07 7.8E-12 85.9 5.5 61 532-593 30-92 (270)
77 COG4106 Tam Trans-aconitate me 98.4 4.5E-07 9.8E-12 85.1 6.1 60 537-596 17-77 (257)
78 PRK00312 pcm protein-L-isoaspa 98.4 9.6E-07 2.1E-11 86.2 8.8 61 538-599 66-126 (212)
79 PRK13943 protein-L-isoaspartat 98.4 1E-06 2.2E-11 90.7 9.2 63 537-599 67-131 (322)
80 PTZ00338 dimethyladenosine tra 98.4 1E-06 2.3E-11 89.8 9.0 62 536-598 22-83 (294)
81 PTZ00363 rab-GDP dissociation 98.4 7.1E-06 1.5E-10 88.6 15.7 119 63-185 164-285 (443)
82 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 9.2E-07 2E-11 86.6 8.0 81 493-594 3-85 (223)
83 COG2518 Pcm Protein-L-isoaspar 98.4 1.2E-06 2.5E-11 83.3 8.2 63 537-600 59-121 (209)
84 PRK14967 putative methyltransf 98.4 1.1E-06 2.4E-11 86.4 8.6 59 539-598 25-84 (223)
85 PF05175 MTS: Methyltransferas 98.4 1.7E-06 3.8E-11 81.2 9.5 73 521-599 8-81 (170)
86 PLN02490 MPBQ/MSBQ methyltrans 98.4 7.1E-07 1.5E-11 92.4 7.4 55 540-594 102-158 (340)
87 PRK03522 rumB 23S rRNA methylu 98.4 1.2E-06 2.6E-11 90.8 9.1 61 538-599 161-221 (315)
88 KOG1271 Methyltransferases [Ge 98.4 6.6E-07 1.4E-11 81.6 6.1 68 533-600 46-118 (227)
89 PRK14968 putative methyltransf 98.4 1.3E-06 2.9E-11 83.1 8.6 59 541-600 14-72 (188)
90 TIGR03438 probable methyltrans 98.3 1.6E-06 3.4E-11 89.3 9.4 88 500-596 21-111 (301)
91 PRK00121 trmB tRNA (guanine-N( 98.3 1.1E-06 2.4E-11 84.9 7.6 50 550-599 40-90 (202)
92 PRK14896 ksgA 16S ribosomal RN 98.3 1.3E-06 2.8E-11 87.9 7.9 59 536-595 15-73 (258)
93 TIGR03840 TMPT_Se_Te thiopurin 98.3 1.4E-06 3E-11 84.8 7.8 49 542-591 26-74 (213)
94 TIGR03533 L3_gln_methyl protei 98.3 2E-06 4.3E-11 87.6 9.3 52 549-600 120-172 (284)
95 PRK15001 SAM-dependent 23S rib 98.3 1.4E-06 3.1E-11 91.5 8.3 73 521-599 205-278 (378)
96 TIGR00537 hemK_rel_arch HemK-r 98.3 1.4E-06 3.1E-11 82.5 7.5 56 542-598 11-66 (179)
97 COG4976 Predicted methyltransf 98.3 3.5E-07 7.6E-12 86.4 3.0 82 496-592 85-166 (287)
98 PRK09489 rsmC 16S ribosomal RN 98.3 2E-06 4.4E-11 89.7 8.4 59 541-599 187-246 (342)
99 TIGR00452 methyltransferase, p 98.3 3.8E-06 8.3E-11 86.3 10.1 57 534-591 105-162 (314)
100 TIGR00091 tRNA (guanine-N(7)-) 98.3 1.4E-06 3.1E-11 83.6 6.6 50 550-599 16-66 (194)
101 PF01135 PCMT: Protein-L-isoas 98.3 2E-06 4.4E-11 83.1 7.6 64 536-599 58-123 (209)
102 PF13649 Methyltransf_25: Meth 98.3 1.3E-06 2.8E-11 74.4 5.2 45 554-598 1-49 (101)
103 TIGR02716 C20_methyl_CrtF C-20 98.3 2.4E-06 5.3E-11 88.2 8.3 62 539-601 138-200 (306)
104 PRK04266 fibrillarin; Provisio 98.2 2.1E-06 4.5E-11 84.3 7.0 52 544-595 66-118 (226)
105 TIGR02734 crtI_fam phytoene de 98.2 1.3E-05 2.8E-10 88.8 14.2 144 63-219 160-307 (502)
106 PRK13255 thiopurine S-methyltr 98.2 2.9E-06 6.2E-11 82.9 7.8 48 542-590 29-76 (218)
107 PRK15068 tRNA mo(5)U34 methylt 98.2 3.7E-06 8.1E-11 87.1 9.0 60 535-594 107-166 (322)
108 COG4123 Predicted O-methyltran 98.2 2.4E-06 5.2E-11 83.6 6.9 61 541-601 35-96 (248)
109 COG2813 RsmC 16S RNA G1207 met 98.2 3.1E-06 6.8E-11 84.6 7.8 61 540-600 148-209 (300)
110 TIGR00536 hemK_fam HemK family 98.2 4.2E-06 9E-11 85.5 8.9 51 550-600 114-165 (284)
111 PRK05134 bifunctional 3-demeth 98.2 7.7E-06 1.7E-10 81.0 10.6 62 536-598 34-95 (233)
112 PRK08317 hypothetical protein; 98.2 3.7E-06 8E-11 83.2 8.2 55 538-592 7-63 (241)
113 PRK14966 unknown domain/N5-glu 98.2 3.8E-06 8.3E-11 88.4 8.5 58 539-598 242-300 (423)
114 TIGR01177 conserved hypothetic 98.2 3.7E-06 8.1E-11 87.7 8.4 59 541-600 173-231 (329)
115 COG2890 HemK Methylase of poly 98.2 3.9E-06 8.6E-11 85.0 8.3 46 553-598 113-159 (280)
116 PRK06202 hypothetical protein; 98.2 2.5E-06 5.3E-11 84.5 6.7 51 548-598 58-113 (232)
117 PRK14121 tRNA (guanine-N(7)-)- 98.2 4.1E-06 9E-11 87.6 8.2 60 541-600 113-173 (390)
118 PF13659 Methyltransf_26: Meth 98.2 2.9E-06 6.4E-11 74.1 6.1 50 551-600 1-50 (117)
119 TIGR00479 rumA 23S rRNA (uraci 98.2 5.6E-06 1.2E-10 89.8 9.3 63 536-599 278-340 (431)
120 PRK04148 hypothetical protein; 98.2 6.8E-06 1.5E-10 72.8 8.0 53 540-593 6-59 (134)
121 PRK11805 N5-glutamine S-adenos 98.2 6.2E-06 1.3E-10 84.9 8.9 49 552-600 135-184 (307)
122 PRK11873 arsM arsenite S-adeno 98.2 4.6E-06 9.9E-11 84.7 7.9 55 545-599 72-128 (272)
123 PRK11727 23S rRNA mA1618 methy 98.2 6.4E-06 1.4E-10 84.6 8.8 52 550-601 114-167 (321)
124 PF08241 Methyltransf_11: Meth 98.2 1.9E-06 4.1E-11 71.8 4.1 43 555-597 1-43 (95)
125 PRK06922 hypothetical protein; 98.2 3.7E-06 8.1E-11 92.5 7.4 51 547-597 415-466 (677)
126 PF07021 MetW: Methionine bios 98.1 3.6E-06 7.7E-11 78.8 5.8 50 541-592 6-55 (193)
127 TIGR00755 ksgA dimethyladenosi 98.1 6.5E-06 1.4E-10 82.6 8.0 58 536-594 15-72 (253)
128 PF13489 Methyltransf_23: Meth 98.1 5.3E-06 1.2E-10 76.6 6.3 40 548-588 20-59 (161)
129 TIGR03704 PrmC_rel_meth putati 98.1 1E-05 2.2E-10 80.9 8.7 48 551-598 87-135 (251)
130 TIGR03534 RF_mod_PrmC protein- 98.1 1.1E-05 2.3E-10 80.8 9.0 62 537-599 75-137 (251)
131 COG3349 Uncharacterized conser 98.1 2.4E-05 5.3E-10 83.5 11.6 157 61-222 145-312 (485)
132 TIGR02081 metW methionine bios 98.1 7E-06 1.5E-10 78.9 6.8 49 541-591 6-54 (194)
133 TIGR02085 meth_trns_rumB 23S r 98.1 1.2E-05 2.6E-10 85.3 9.1 80 516-599 202-281 (374)
134 PRK10901 16S rRNA methyltransf 98.1 9.2E-06 2E-10 87.8 8.1 59 541-599 235-294 (427)
135 PRK01544 bifunctional N5-gluta 98.1 1.1E-05 2.3E-10 88.8 8.7 51 550-600 138-189 (506)
136 COG2263 Predicted RNA methylas 98.0 1.6E-05 3.4E-10 73.8 8.1 50 545-595 40-90 (198)
137 KOG2904 Predicted methyltransf 98.0 1E-05 2.2E-10 78.7 7.1 52 550-601 148-200 (328)
138 PRK14903 16S rRNA methyltransf 98.0 9.8E-06 2.1E-10 87.4 7.9 59 541-599 228-288 (431)
139 PRK14902 16S rRNA methyltransf 98.0 1E-05 2.2E-10 88.0 7.8 59 541-599 241-301 (444)
140 TIGR00446 nop2p NOL1/NOP2/sun 98.0 1.4E-05 3E-10 80.7 8.0 57 543-599 64-122 (264)
141 PRK14904 16S rRNA methyltransf 98.0 1.3E-05 2.7E-10 87.2 8.1 59 541-599 241-301 (445)
142 TIGR00563 rsmB ribosomal RNA s 98.0 1.2E-05 2.6E-10 86.9 8.0 59 541-599 229-288 (426)
143 KOG0029 Amine oxidase [Seconda 98.0 8.1E-05 1.8E-09 81.4 14.2 209 125-339 210-457 (501)
144 TIGR00478 tly hemolysin TlyA f 98.0 1.4E-05 3.1E-10 78.1 7.5 52 536-588 60-113 (228)
145 PRK10909 rsmD 16S rRNA m(2)G96 98.0 2.3E-05 4.9E-10 75.3 8.7 51 549-599 52-102 (199)
146 PF07156 Prenylcys_lyase: Pren 98.0 1.8E-05 4E-10 83.0 8.5 113 64-192 69-189 (368)
147 PRK11088 rrmA 23S rRNA methylt 98.0 1.9E-05 4.2E-10 80.1 8.4 45 549-593 84-132 (272)
148 PF08242 Methyltransf_12: Meth 98.0 4E-07 8.7E-12 77.2 -3.8 44 555-598 1-45 (99)
149 TIGR02072 BioC biotin biosynth 98.0 2.1E-05 4.5E-10 77.8 7.9 60 535-594 16-79 (240)
150 TIGR02143 trmA_only tRNA (urac 97.9 3.1E-05 6.7E-10 81.4 9.3 62 536-599 184-245 (353)
151 PRK09328 N5-glutamine S-adenos 97.9 2.8E-05 6.1E-10 78.9 8.8 56 539-594 97-153 (275)
152 PRK00050 16S rRNA m(4)C1402 me 97.9 1.9E-05 4.1E-10 80.1 7.1 58 538-595 7-66 (296)
153 PHA03411 putative methyltransf 97.9 3.6E-05 7.8E-10 76.6 8.8 45 549-593 63-108 (279)
154 PRK14901 16S rRNA methyltransf 97.9 2.2E-05 4.8E-10 85.0 7.8 59 541-599 243-303 (434)
155 PLN02781 Probable caffeoyl-CoA 97.9 2.8E-05 6.2E-10 76.9 7.5 55 547-601 65-121 (234)
156 KOG0685 Flavin-containing amin 97.9 1.8E-05 3.8E-10 83.1 6.2 105 125-229 214-330 (498)
157 smart00138 MeTrc Methyltransfe 97.9 2.8E-05 6E-10 78.4 7.5 70 524-593 73-152 (264)
158 COG2519 GCD14 tRNA(1-methylade 97.9 3.9E-05 8.4E-10 74.7 7.9 61 541-601 85-147 (256)
159 TIGR01983 UbiG ubiquinone bios 97.9 5.1E-05 1.1E-09 74.5 9.0 48 550-598 45-92 (224)
160 PRK15128 23S rRNA m(5)C1962 me 97.9 5E-05 1.1E-09 80.8 9.1 50 549-599 219-269 (396)
161 COG2265 TrmA SAM-dependent met 97.9 4.1E-05 8.9E-10 82.0 8.4 66 534-600 277-342 (432)
162 PLN02336 phosphoethanolamine N 97.8 2.6E-05 5.5E-10 85.8 6.7 52 540-592 27-78 (475)
163 PRK05031 tRNA (uracil-5-)-meth 97.8 6.6E-05 1.4E-09 79.3 9.3 62 536-599 193-254 (362)
164 TIGR00095 RNA methyltransferas 97.8 7.8E-05 1.7E-09 71.2 8.6 50 550-600 49-99 (189)
165 COG0030 KsgA Dimethyladenosine 97.8 5.5E-05 1.2E-09 74.8 7.6 58 536-594 16-73 (259)
166 COG2081 Predicted flavoprotein 97.8 0.00022 4.8E-09 73.8 12.1 108 65-187 56-164 (408)
167 PF08704 GCD14: tRNA methyltra 97.8 7.7E-05 1.7E-09 73.8 8.5 63 538-600 28-92 (247)
168 PRK11188 rrmJ 23S rRNA methylt 97.8 3.3E-05 7.2E-10 75.0 5.6 46 538-583 38-86 (209)
169 PLN03075 nicotianamine synthas 97.8 7.5E-05 1.6E-09 75.5 8.1 57 544-600 117-177 (296)
170 PF05958 tRNA_U5-meth_tr: tRNA 97.7 7.2E-05 1.6E-09 78.6 8.0 63 536-600 183-245 (352)
171 PF05401 NodS: Nodulation prot 97.7 4.3E-05 9.3E-10 71.8 5.5 59 536-595 28-87 (201)
172 PLN02672 methionine S-methyltr 97.7 6.5E-05 1.4E-09 88.1 7.7 49 551-599 119-168 (1082)
173 PRK11783 rlmL 23S rRNA m(2)G24 97.7 9.7E-05 2.1E-09 84.7 8.8 49 550-599 538-587 (702)
174 PTZ00146 fibrillarin; Provisio 97.7 6.3E-05 1.4E-09 75.7 6.2 51 543-593 125-177 (293)
175 PF13679 Methyltransf_32: Meth 97.7 0.00023 5E-09 64.6 8.8 50 548-597 23-77 (141)
176 COG1233 Phytoene dehydrogenase 97.6 0.00041 8.8E-09 76.4 12.3 120 65-196 167-287 (487)
177 PRK13256 thiopurine S-methyltr 97.6 0.00013 2.8E-09 71.2 7.4 49 543-592 36-84 (226)
178 PF01596 Methyltransf_3: O-met 97.6 0.00022 4.8E-09 68.8 9.0 65 534-601 32-98 (205)
179 TIGR00438 rrmJ cell division p 97.6 7.2E-05 1.6E-09 71.5 5.5 40 546-585 28-69 (188)
180 PF05724 TPMT: Thiopurine S-me 97.6 7.3E-05 1.6E-09 72.9 5.4 51 541-592 28-78 (218)
181 KOG2187 tRNA uracil-5-methyltr 97.6 3.7E-05 8E-10 81.4 3.1 94 502-600 338-432 (534)
182 PRK04457 spermidine synthase; 97.6 0.00017 3.6E-09 72.6 7.5 47 549-595 65-112 (262)
183 KOG0820 Ribosomal RNA adenine 97.6 0.00017 3.6E-09 70.4 7.0 59 538-597 46-104 (315)
184 PF02390 Methyltransf_4: Putat 97.6 0.00013 2.8E-09 70.0 6.3 49 552-600 19-68 (195)
185 PLN02476 O-methyltransferase 97.6 0.00023 5E-09 71.6 8.0 54 548-601 116-171 (278)
186 PHA03412 putative methyltransf 97.5 0.00011 2.4E-09 71.5 5.3 44 551-594 50-97 (241)
187 COG4122 Predicted O-methyltran 97.5 0.00026 5.6E-09 68.4 7.8 57 545-601 54-112 (219)
188 KOG3420 Predicted RNA methylas 97.5 0.00011 2.5E-09 64.7 4.5 62 538-599 36-97 (185)
189 PF01170 UPF0020: Putative RNA 97.5 0.00031 6.7E-09 66.5 7.2 61 540-600 18-88 (179)
190 KOG1499 Protein arginine N-met 97.4 0.00036 7.7E-09 71.0 7.0 52 548-600 58-109 (346)
191 PF03291 Pox_MCEL: mRNA cappin 97.4 0.00023 5.1E-09 73.7 5.7 46 550-595 62-107 (331)
192 KOG4300 Predicted methyltransf 97.4 0.00029 6.3E-09 66.0 5.6 44 553-596 79-122 (252)
193 PF08123 DOT1: Histone methyla 97.4 0.00041 8.8E-09 66.9 6.8 56 538-593 30-86 (205)
194 PF03486 HI0933_like: HI0933-l 97.3 0.0011 2.3E-08 71.0 10.0 85 102-186 76-162 (409)
195 TIGR01444 fkbM_fam methyltrans 97.3 0.0005 1.1E-08 62.3 6.5 47 553-599 1-48 (143)
196 PF08003 Methyltransf_9: Prote 97.3 0.00085 1.8E-08 67.4 8.5 50 540-590 105-155 (315)
197 PF02475 Met_10: Met-10+ like- 97.3 0.00038 8.3E-09 66.7 5.5 54 548-601 99-153 (200)
198 KOG1269 SAM-dependent methyltr 97.3 0.00035 7.5E-09 73.0 5.6 106 493-601 56-161 (364)
199 PRK04338 N(2),N(2)-dimethylgua 97.3 0.00064 1.4E-08 72.0 7.7 51 550-600 57-108 (382)
200 cd02440 AdoMet_MTases S-adenos 97.2 0.00063 1.4E-08 56.7 5.8 41 553-593 1-41 (107)
201 TIGR03862 flavo_PP4765 unchara 97.2 0.0016 3.4E-08 68.7 9.9 84 103-188 54-139 (376)
202 PRK00811 spermidine synthase; 97.2 0.0012 2.6E-08 67.3 8.5 46 550-595 76-122 (283)
203 COG1041 Predicted DNA modifica 97.2 0.00065 1.4E-08 69.5 6.2 60 540-600 187-246 (347)
204 KOG3010 Methyltransferase [Gen 97.2 0.00044 9.6E-09 66.6 4.5 45 548-593 30-75 (261)
205 PF10294 Methyltransf_16: Puta 97.1 0.0013 2.7E-08 62.0 7.2 50 547-597 42-92 (173)
206 PLN02366 spermidine synthase 97.1 0.0015 3.3E-08 67.1 8.0 47 549-595 90-137 (308)
207 KOG1500 Protein arginine N-met 97.0 0.0014 2.9E-08 65.7 6.7 52 549-601 176-227 (517)
208 KOG2899 Predicted methyltransf 97.0 0.00078 1.7E-08 64.8 4.7 45 550-594 58-103 (288)
209 PLN02589 caffeoyl-CoA O-methyl 97.0 0.0021 4.6E-08 63.8 7.6 62 537-601 69-132 (247)
210 TIGR00417 speE spermidine synt 97.0 0.0028 6.1E-08 64.2 8.8 46 550-595 72-118 (270)
211 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0011 2.4E-08 68.6 5.1 63 536-598 32-102 (311)
212 COG0220 Predicted S-adenosylme 96.9 0.0013 2.9E-08 64.2 5.3 48 552-599 50-98 (227)
213 PF00398 RrnaAD: Ribosomal RNA 96.9 0.002 4.3E-08 65.0 6.7 58 536-594 16-73 (262)
214 COG1092 Predicted SAM-dependen 96.8 0.0035 7.6E-08 66.1 8.2 49 551-600 218-267 (393)
215 PF03602 Cons_hypoth95: Conser 96.8 0.0027 5.9E-08 60.2 6.4 51 550-600 42-92 (183)
216 KOG1661 Protein-L-isoaspartate 96.8 0.0036 7.8E-08 59.1 7.0 59 538-596 68-131 (237)
217 KOG1975 mRNA cap methyltransfe 96.8 0.002 4.4E-08 64.5 5.6 93 491-595 69-162 (389)
218 PRK01581 speE spermidine synth 96.7 0.0052 1.1E-07 63.8 8.4 42 550-591 150-192 (374)
219 PRK01544 bifunctional N5-gluta 96.7 0.0039 8.4E-08 68.8 7.8 52 549-600 346-398 (506)
220 PF05971 Methyltransf_10: Prot 96.7 0.0055 1.2E-07 62.1 8.0 66 536-601 83-155 (299)
221 PRK11760 putative 23S rRNA C24 96.6 0.0032 6.9E-08 64.5 6.0 35 548-583 209-243 (357)
222 PRK03612 spermidine synthase; 96.6 0.0037 8.1E-08 69.3 6.8 44 549-592 296-340 (521)
223 KOG3191 Predicted N6-DNA-methy 96.5 0.014 2.9E-07 54.0 8.7 48 551-598 44-93 (209)
224 PF01728 FtsJ: FtsJ-like methy 96.5 0.0022 4.7E-08 60.8 3.8 48 537-584 7-59 (181)
225 TIGR00006 S-adenosyl-methyltra 96.5 0.009 2E-07 60.9 8.2 59 538-596 8-67 (305)
226 PRK10742 putative methyltransf 96.4 0.0087 1.9E-07 58.8 7.3 56 540-596 76-133 (250)
227 KOG2915 tRNA(1-methyladenosine 96.4 0.011 2.4E-07 58.0 7.6 62 539-600 94-157 (314)
228 PRK11783 rlmL 23S rRNA m(2)G24 96.4 0.011 2.3E-07 68.1 8.7 60 541-600 180-283 (702)
229 PRK13977 myosin-cross-reactive 96.3 0.049 1.1E-06 60.2 13.2 124 61-191 159-294 (576)
230 KOG2730 Methylase [General fun 96.3 0.0043 9.2E-08 58.9 4.3 50 551-601 95-144 (263)
231 COG0742 N6-adenine-specific me 96.3 0.022 4.7E-07 53.6 8.6 64 538-601 29-94 (187)
232 PF05185 PRMT5: PRMT5 arginine 96.3 0.013 2.8E-07 63.4 8.2 51 551-601 187-242 (448)
233 TIGR03439 methyl_EasF probable 96.3 0.026 5.7E-07 58.2 10.1 86 500-594 34-125 (319)
234 PF10672 Methyltrans_SAM: S-ad 96.3 0.016 3.6E-07 58.6 8.4 50 550-600 123-173 (286)
235 COG0116 Predicted N6-adenine-s 96.2 0.013 2.8E-07 61.1 7.5 60 540-600 181-281 (381)
236 KOG4254 Phytoene desaturase [C 96.2 0.032 7E-07 58.6 10.3 82 123-204 253-336 (561)
237 COG2520 Predicted methyltransf 96.2 0.0093 2E-07 61.6 6.4 58 541-601 181-239 (341)
238 PRK11933 yebU rRNA (cytosine-C 96.2 0.014 2.9E-07 63.6 8.0 54 547-600 110-165 (470)
239 PF06080 DUF938: Protein of un 96.2 0.01 2.2E-07 56.6 6.1 50 551-600 26-76 (204)
240 KOG1501 Arginine N-methyltrans 96.2 0.0062 1.3E-07 63.2 4.8 49 553-601 69-117 (636)
241 TIGR00031 UDP-GALP_mutase UDP- 95.9 0.051 1.1E-06 57.6 10.4 235 65-338 129-376 (377)
242 PF00996 GDI: GDP dissociation 95.8 0.12 2.6E-06 55.7 12.9 140 39-185 138-284 (438)
243 TIGR00275 flavoprotein, HI0933 95.7 0.065 1.4E-06 57.5 10.5 85 105-190 75-160 (400)
244 PF13738 Pyr_redox_3: Pyridine 95.6 0.023 5E-07 54.4 6.2 52 133-187 84-135 (203)
245 PF01266 DAO: FAD dependent ox 95.5 0.026 5.6E-07 58.9 6.6 69 126-196 136-208 (358)
246 PF00891 Methyltransf_2: O-met 95.5 0.035 7.7E-07 55.1 7.1 51 540-591 90-141 (241)
247 PF09243 Rsm22: Mitochondrial 95.4 0.062 1.3E-06 54.5 8.4 61 536-596 19-81 (274)
248 KOG4058 Uncharacterized conser 95.2 0.034 7.4E-07 49.5 5.1 64 537-601 59-123 (199)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.2 0.083 1.8E-06 53.8 8.7 60 541-600 76-137 (283)
250 KOG3115 Methyltransferase-like 95.1 0.019 4.2E-07 53.9 3.5 46 552-597 62-108 (249)
251 COG0144 Sun tRNA and rRNA cyto 94.9 0.089 1.9E-06 55.4 8.1 60 541-600 147-209 (355)
252 TIGR00308 TRM1 tRNA(guanine-26 94.8 0.095 2.1E-06 55.4 8.2 49 551-599 45-95 (374)
253 PRK11524 putative methyltransf 94.7 0.1 2.2E-06 53.3 7.8 58 536-595 195-252 (284)
254 PF02527 GidB: rRNA small subu 94.7 0.15 3.2E-06 48.3 8.2 48 553-600 51-99 (184)
255 PF13454 NAD_binding_9: FAD-NA 94.6 0.12 2.5E-06 47.7 7.2 50 136-186 103-153 (156)
256 TIGR02987 met_A_Alw26 type II 94.5 0.07 1.5E-06 59.5 6.7 48 550-597 31-87 (524)
257 COG1189 Predicted rRNA methyla 94.5 0.05 1.1E-06 52.8 4.7 53 537-589 65-118 (245)
258 PRK13699 putative methylase; P 94.5 0.14 3.1E-06 50.3 7.9 57 538-596 152-208 (227)
259 TIGR03197 MnmC_Cterm tRNA U-34 94.4 0.089 1.9E-06 56.0 7.0 56 133-189 134-189 (381)
260 COG0357 GidB Predicted S-adeno 94.4 0.12 2.7E-06 49.9 7.2 50 551-600 68-118 (215)
261 COG0579 Predicted dehydrogenas 94.3 0.24 5.1E-06 53.1 9.6 64 133-196 152-219 (429)
262 PF03141 Methyltransf_29: Puta 94.1 0.063 1.4E-06 57.6 4.7 60 532-592 95-161 (506)
263 KOG2361 Predicted methyltransf 94.0 0.053 1.2E-06 52.5 3.7 42 553-594 74-118 (264)
264 PF07091 FmrO: Ribosomal RNA m 94.0 0.12 2.7E-06 50.7 6.3 51 549-599 104-155 (251)
265 PLN02823 spermine synthase 94.0 0.23 5E-06 51.8 8.7 44 551-594 104-148 (336)
266 PF11899 DUF3419: Protein of u 94.0 0.15 3.3E-06 53.9 7.4 78 502-594 1-78 (380)
267 KOG2078 tRNA modification enzy 93.8 0.036 7.8E-07 57.8 2.3 53 548-601 247-299 (495)
268 PHA01634 hypothetical protein 93.8 0.24 5.2E-06 43.1 6.9 58 541-600 20-78 (156)
269 PF01739 CheR: CheR methyltran 93.8 0.15 3.3E-06 48.8 6.4 42 550-591 31-82 (196)
270 COG0293 FtsJ 23S rRNA methylas 93.8 0.1 2.2E-06 49.9 5.1 47 537-583 31-80 (205)
271 COG3897 Predicted methyltransf 93.7 0.041 9E-07 51.6 2.3 60 540-599 69-128 (218)
272 COG2384 Predicted SAM-dependen 93.7 0.17 3.6E-06 48.6 6.4 61 539-601 7-68 (226)
273 PF04445 SAM_MT: Putative SAM- 93.6 0.11 2.4E-06 50.8 5.2 53 540-593 63-117 (234)
274 PF12147 Methyltransf_20: Puta 93.6 0.34 7.3E-06 48.6 8.6 51 551-601 136-189 (311)
275 COG1064 AdhP Zn-dependent alco 93.5 0.16 3.5E-06 52.5 6.5 52 543-594 159-211 (339)
276 COG3963 Phospholipid N-methylt 93.3 0.52 1.1E-05 43.3 8.6 88 500-596 7-96 (194)
277 PF01555 N6_N4_Mtase: DNA meth 93.2 0.21 4.6E-06 48.6 6.7 54 536-591 178-231 (231)
278 KOG0024 Sorbitol dehydrogenase 93.1 0.19 4.2E-06 50.9 6.0 51 541-591 160-212 (354)
279 KOG2651 rRNA adenine N-6-methy 92.9 0.38 8.3E-06 49.6 7.9 56 536-591 138-194 (476)
280 COG2509 Uncharacterized FAD-de 92.7 0.31 6.8E-06 51.7 7.2 57 130-186 169-226 (486)
281 KOG4589 Cell division protein 92.6 0.15 3.2E-06 47.5 4.0 35 548-582 67-103 (232)
282 PF05219 DREV: DREV methyltran 92.5 0.23 4.9E-06 49.1 5.6 41 550-591 94-134 (265)
283 PF07757 AdoMet_MTase: Predict 92.4 0.21 4.4E-06 42.3 4.3 32 550-582 58-89 (112)
284 TIGR02352 thiamin_ThiO glycine 92.3 0.46 1E-05 49.2 8.1 57 133-190 136-193 (337)
285 PRK11728 hydroxyglutarate oxid 92.2 0.41 8.9E-06 51.2 7.7 56 133-189 148-203 (393)
286 PF01795 Methyltransf_5: MraW 92.1 0.18 3.9E-06 51.5 4.5 57 538-594 8-65 (310)
287 TIGR01377 soxA_mon sarcosine o 92.1 0.41 8.8E-06 50.7 7.6 55 134-189 145-199 (380)
288 COG0500 SmtA SAM-dependent met 92.1 0.28 6.1E-06 43.6 5.4 39 554-593 52-92 (257)
289 COG2521 Predicted archaeal met 91.9 0.14 3.1E-06 49.4 3.2 48 543-591 127-175 (287)
290 TIGR03329 Phn_aa_oxid putative 91.8 0.41 9E-06 52.4 7.3 55 133-189 182-236 (460)
291 PRK00711 D-amino acid dehydrog 91.6 0.49 1.1E-05 50.9 7.5 57 133-190 200-257 (416)
292 COG0275 Predicted S-adenosylme 91.5 0.7 1.5E-05 46.6 7.8 60 538-597 11-72 (314)
293 PTZ00383 malate:quinone oxidor 91.4 0.52 1.1E-05 52.0 7.4 55 134-189 211-272 (497)
294 KOG1663 O-methyltransferase [S 91.3 0.69 1.5E-05 44.8 7.1 53 549-601 72-126 (237)
295 PRK06847 hypothetical protein; 91.2 0.62 1.3E-05 49.3 7.7 55 135-189 108-162 (375)
296 PRK11259 solA N-methyltryptoph 91.0 0.59 1.3E-05 49.4 7.3 55 134-189 149-203 (376)
297 PRK09897 hypothetical protein; 90.7 0.68 1.5E-05 51.5 7.5 53 134-186 107-162 (534)
298 PF01564 Spermine_synth: Sperm 90.5 1.1 2.3E-05 44.7 8.1 59 536-595 63-122 (246)
299 PF04672 Methyltransf_19: S-ad 90.4 0.48 1E-05 47.3 5.4 89 506-595 15-117 (267)
300 PRK08773 2-octaprenyl-3-methyl 90.3 0.86 1.9E-05 48.6 7.8 55 134-188 113-167 (392)
301 KOG2940 Predicted methyltransf 90.3 0.52 1.1E-05 45.3 5.3 42 550-591 72-113 (325)
302 COG5379 BtaA S-adenosylmethion 90.3 1.2 2.6E-05 44.4 7.9 76 505-595 32-107 (414)
303 cd08283 FDH_like_1 Glutathione 90.2 0.64 1.4E-05 49.6 6.7 49 544-592 178-228 (386)
304 PRK06116 glutathione reductase 90.1 0.83 1.8E-05 49.8 7.6 53 134-186 208-261 (450)
305 COG4076 Predicted RNA methylas 90.1 0.29 6.4E-06 45.5 3.3 47 552-599 34-80 (252)
306 PRK07333 2-octaprenyl-6-methox 90.0 0.91 2E-05 48.5 7.7 63 134-196 111-174 (403)
307 TIGR01984 UbiH 2-polyprenyl-6- 89.9 0.98 2.1E-05 47.9 7.9 63 134-196 105-169 (382)
308 PRK12409 D-amino acid dehydrog 89.8 0.9 2E-05 48.8 7.5 57 133-189 196-257 (410)
309 PRK01747 mnmC bifunctional tRN 89.6 0.77 1.7E-05 52.8 7.2 56 133-189 407-462 (662)
310 PRK05714 2-octaprenyl-3-methyl 89.6 1 2.2E-05 48.3 7.7 63 134-196 112-175 (405)
311 TIGR03378 glycerol3P_GlpB glyc 89.3 1.1 2.4E-05 48.1 7.5 58 131-189 261-321 (419)
312 COG0421 SpeE Spermidine syntha 89.2 1.3 2.8E-05 44.9 7.6 59 536-595 63-122 (282)
313 PF00070 Pyr_redox: Pyridine n 89.0 0.83 1.8E-05 36.6 5.0 45 130-174 36-80 (80)
314 PLN02507 glutathione reductase 89.0 1.2 2.7E-05 49.3 8.0 54 134-187 244-297 (499)
315 PRK05249 soluble pyridine nucl 88.9 1.2 2.6E-05 48.7 7.8 54 134-187 216-269 (461)
316 PF11599 AviRa: RRNA methyltra 88.7 1.1 2.3E-05 43.0 6.0 88 504-594 8-98 (246)
317 TIGR03219 salicylate_mono sali 88.6 0.93 2E-05 48.8 6.6 52 135-188 106-157 (414)
318 cd08254 hydroxyacyl_CoA_DH 6-h 88.6 1.2 2.5E-05 46.1 7.1 48 544-591 159-207 (338)
319 PRK04965 NADH:flavorubredoxin 88.5 1.4 3E-05 46.8 7.7 53 135-187 184-236 (377)
320 PRK09424 pntA NAD(P) transhydr 88.5 0.89 1.9E-05 50.0 6.3 46 546-591 160-206 (509)
321 TIGR01292 TRX_reduct thioredox 88.4 1.3 2.8E-05 44.9 7.2 53 135-188 58-110 (300)
322 PRK13339 malate:quinone oxidor 88.4 1.3 2.9E-05 48.7 7.6 55 134-188 184-245 (497)
323 PF06039 Mqo: Malate:quinone o 88.3 1.9 4.1E-05 46.4 8.2 82 133-216 180-268 (488)
324 PRK05257 malate:quinone oxidor 88.2 1.2 2.6E-05 49.2 7.1 57 133-189 182-245 (494)
325 COG3129 Predicted SAM-dependen 88.1 0.63 1.4E-05 44.9 4.1 50 550-599 78-129 (292)
326 TIGR01424 gluta_reduc_2 glutat 88.0 1.5 3.2E-05 47.8 7.8 55 134-188 207-261 (446)
327 PF07942 N2227: N2227-like pro 87.8 1.4 3.1E-05 44.2 6.8 40 550-590 56-95 (270)
328 TIGR01988 Ubi-OHases Ubiquinon 87.8 1.5 3.2E-05 46.5 7.4 54 134-187 106-160 (385)
329 TIGR01320 mal_quin_oxido malat 87.8 1.6 3.5E-05 48.1 7.8 56 133-188 177-238 (483)
330 TIGR03201 dearomat_had 6-hydro 87.6 1.4 3E-05 46.2 7.0 48 544-591 160-208 (349)
331 PRK10611 chemotaxis methyltran 87.4 0.91 2E-05 46.2 5.2 41 552-592 117-166 (287)
332 PLN02172 flavin-containing mon 87.4 1.5 3.2E-05 48.0 7.2 55 134-188 111-171 (461)
333 PRK06416 dihydrolipoamide dehy 87.3 1.5 3.2E-05 48.0 7.3 55 134-188 213-270 (462)
334 PRK06834 hypothetical protein; 87.2 1.7 3.7E-05 48.0 7.7 52 135-186 101-152 (488)
335 PRK00536 speE spermidine synth 87.0 2.4 5.3E-05 42.5 7.8 42 551-593 73-114 (262)
336 PRK07845 flavoprotein disulfid 86.9 1.8 3.9E-05 47.5 7.6 54 134-187 218-271 (466)
337 TIGR01350 lipoamide_DH dihydro 86.7 1.8 4E-05 47.2 7.6 55 134-188 211-267 (461)
338 PRK07236 hypothetical protein; 86.7 1.6 3.4E-05 46.5 6.9 62 133-196 99-162 (386)
339 PRK07588 hypothetical protein; 86.6 1.8 3.9E-05 46.1 7.3 52 135-187 104-155 (391)
340 PF03059 NAS: Nicotianamine sy 86.5 2 4.3E-05 43.4 6.9 49 552-600 122-174 (276)
341 COG1565 Uncharacterized conser 86.5 5.5 0.00012 41.4 10.1 67 531-597 58-133 (370)
342 TIGR02485 CobZ_N-term precorri 86.3 2.1 4.6E-05 46.4 7.7 57 131-187 120-180 (432)
343 COG1249 Lpd Pyruvate/2-oxoglut 86.3 1.8 4E-05 47.0 7.1 56 131-186 211-268 (454)
344 TIGR02822 adh_fam_2 zinc-bindi 86.0 2 4.3E-05 44.7 7.0 49 544-592 159-208 (329)
345 COG1352 CheR Methylase of chem 85.9 2.6 5.6E-05 42.4 7.4 63 528-591 75-147 (268)
346 TIGR03140 AhpF alkyl hydropero 85.9 2.1 4.5E-05 47.6 7.5 56 134-189 267-322 (515)
347 KOG2920 Predicted methyltransf 85.8 0.56 1.2E-05 46.9 2.6 38 549-586 115-152 (282)
348 COG0286 HsdM Type I restrictio 85.8 2 4.3E-05 47.4 7.1 90 501-599 142-240 (489)
349 PRK07190 hypothetical protein; 85.7 2.3 5.1E-05 46.9 7.7 55 136-190 111-165 (487)
350 TIGR02818 adh_III_F_hyde S-(hy 85.7 2.2 4.8E-05 45.1 7.3 50 542-591 177-228 (368)
351 PF06100 Strep_67kDa_ant: Stre 85.5 8.7 0.00019 41.8 11.5 96 61-163 140-236 (500)
352 PF02036 SCP2: SCP-2 sterol tr 85.2 3 6.6E-05 34.9 6.6 38 397-436 54-91 (102)
353 PLN02740 Alcohol dehydrogenase 85.2 2.1 4.5E-05 45.6 6.8 49 543-591 191-241 (381)
354 PRK08010 pyridine nucleotide-d 85.2 2.6 5.5E-05 45.9 7.7 52 134-186 199-250 (441)
355 KOG1331 Predicted methyltransf 85.1 0.67 1.5E-05 46.3 2.8 52 536-592 33-84 (293)
356 PRK09880 L-idonate 5-dehydroge 85.0 2.3 5E-05 44.4 7.0 49 543-591 162-212 (343)
357 PRK08163 salicylate hydroxylas 85.0 2.4 5.2E-05 45.2 7.3 51 136-186 111-162 (396)
358 PRK15317 alkyl hydroperoxide r 85.0 2.6 5.6E-05 47.0 7.7 54 135-188 267-320 (517)
359 PF01269 Fibrillarin: Fibrilla 84.9 1.7 3.6E-05 42.1 5.2 51 543-593 66-118 (229)
360 PRK09754 phenylpropionate diox 84.8 3.1 6.7E-05 44.5 8.0 53 135-188 187-239 (396)
361 cd08281 liver_ADH_like1 Zinc-d 84.7 2.4 5.1E-05 44.9 7.0 50 542-591 183-234 (371)
362 PRK06753 hypothetical protein; 84.6 2.4 5.1E-05 44.8 6.9 61 134-196 98-159 (373)
363 PRK09126 hypothetical protein; 84.4 2.1 4.5E-05 45.6 6.4 53 136-188 112-165 (392)
364 PF05891 Methyltransf_PK: AdoM 84.4 1.9 4E-05 41.7 5.3 54 541-594 40-99 (218)
365 PRK07608 ubiquinone biosynthes 84.0 3.1 6.6E-05 44.2 7.5 62 134-196 111-174 (388)
366 PRK05329 anaerobic glycerol-3- 84.0 3 6.5E-05 45.0 7.4 57 131-188 257-316 (422)
367 PRK08020 ubiF 2-octaprenyl-3-m 84.0 3.2 7E-05 44.1 7.7 62 135-196 113-176 (391)
368 PRK10157 putative oxidoreducta 84.0 3.3 7.2E-05 44.9 7.8 53 136-188 110-162 (428)
369 TIGR01423 trypano_reduc trypan 83.7 3.2 6.9E-05 45.8 7.7 53 134-186 231-284 (486)
370 PRK07494 2-octaprenyl-6-methox 83.7 3.2 7E-05 44.1 7.5 55 134-188 111-165 (388)
371 cd08255 2-desacetyl-2-hydroxye 83.5 2.8 6.1E-05 42.0 6.7 49 544-592 91-141 (277)
372 TIGR02032 GG-red-SF geranylger 83.2 3.7 8.1E-05 41.3 7.5 56 135-190 92-148 (295)
373 PRK14727 putative mercuric red 83.2 3.4 7.4E-05 45.5 7.6 55 133-188 227-281 (479)
374 cd08239 THR_DH_like L-threonin 83.2 2.8 6E-05 43.6 6.7 49 543-591 156-206 (339)
375 TIGR01421 gluta_reduc_1 glutat 83.2 3.3 7.3E-05 45.1 7.5 54 134-187 207-262 (450)
376 PTZ00052 thioredoxin reductase 82.9 3.7 8E-05 45.5 7.8 53 134-186 222-274 (499)
377 PLN02463 lycopene beta cyclase 82.9 3.5 7.5E-05 45.0 7.4 52 135-187 115-166 (447)
378 PRK14694 putative mercuric red 82.8 3.7 7.9E-05 45.1 7.7 54 133-187 217-270 (468)
379 PRK06184 hypothetical protein; 82.8 3.3 7.2E-05 45.9 7.4 61 136-196 111-175 (502)
380 PRK07818 dihydrolipoamide dehy 82.7 3.8 8.1E-05 45.0 7.7 54 133-186 212-269 (466)
381 TIGR01813 flavo_cyto_c flavocy 82.6 3.5 7.7E-05 44.7 7.4 54 134-187 130-189 (439)
382 PRK05732 2-octaprenyl-6-methox 82.6 2.6 5.7E-05 44.8 6.3 52 136-187 114-166 (395)
383 TIGR03451 mycoS_dep_FDH mycoth 82.5 3.1 6.7E-05 43.7 6.7 49 543-591 169-219 (358)
384 PRK06327 dihydrolipoamide dehy 82.2 3.8 8.2E-05 45.1 7.5 55 133-187 223-281 (475)
385 PF05834 Lycopene_cycl: Lycope 82.0 3.7 8E-05 43.6 7.1 57 133-190 86-142 (374)
386 TIGR01373 soxB sarcosine oxida 82.0 4.2 9E-05 43.6 7.6 55 135-190 184-240 (407)
387 TIGR03364 HpnW_proposed FAD de 82.0 3 6.4E-05 43.9 6.4 53 133-190 144-197 (365)
388 PF13434 K_oxygenase: L-lysine 81.9 0.47 1E-05 49.7 0.2 77 108-187 71-156 (341)
389 cd08301 alcohol_DH_plants Plan 81.9 3.9 8.4E-05 43.2 7.3 49 543-591 180-230 (369)
390 cd08261 Zn_ADH7 Alcohol dehydr 81.6 4 8.6E-05 42.3 7.1 48 544-591 153-201 (337)
391 PRK08274 tricarballylate dehyd 81.4 3.9 8.4E-05 44.8 7.2 59 130-188 127-190 (466)
392 PLN03154 putative allyl alcoho 81.1 4 8.7E-05 42.8 7.0 48 543-590 151-200 (348)
393 TIGR03366 HpnZ_proposed putati 81.1 3.9 8.5E-05 41.3 6.7 49 543-591 113-163 (280)
394 COG1062 AdhC Zn-dependent alco 80.9 4.1 8.9E-05 42.0 6.5 52 541-592 176-229 (366)
395 cd08300 alcohol_DH_class_III c 80.6 4.6 0.0001 42.6 7.2 49 543-591 179-229 (368)
396 cd05188 MDR Medium chain reduc 80.6 5 0.00011 39.6 7.2 45 548-592 132-177 (271)
397 PRK06370 mercuric reductase; V 80.3 5 0.00011 43.9 7.7 54 134-187 212-268 (463)
398 COG1063 Tdh Threonine dehydrog 80.1 4.3 9.4E-05 42.7 6.8 48 546-593 164-213 (350)
399 PRK06134 putative FAD-binding 79.8 5 0.00011 45.4 7.6 55 134-188 217-276 (581)
400 PRK07251 pyridine nucleotide-d 79.8 5.3 0.00011 43.4 7.6 52 134-186 198-249 (438)
401 PRK08013 oxidoreductase; Provi 79.7 5.3 0.00011 42.8 7.4 52 135-186 112-164 (400)
402 PRK08849 2-octaprenyl-3-methyl 79.6 3.7 8E-05 43.7 6.2 51 136-186 112-163 (384)
403 PRK12266 glpD glycerol-3-phosp 79.6 4.4 9.5E-05 45.0 6.9 56 134-189 155-215 (508)
404 TIGR01438 TGR thioredoxin and 79.5 5.5 0.00012 43.9 7.6 54 134-187 220-276 (484)
405 PF00890 FAD_binding_2: FAD bi 79.5 4.9 0.00011 43.2 7.2 57 132-188 139-201 (417)
406 PRK08850 2-octaprenyl-6-methox 79.4 5.7 0.00012 42.6 7.6 52 135-186 112-164 (405)
407 PRK06996 hypothetical protein; 79.3 5.2 0.00011 42.8 7.2 63 134-196 115-182 (398)
408 PRK06481 fumarate reductase fl 79.1 6 0.00013 43.9 7.8 53 135-187 191-248 (506)
409 PRK13748 putative mercuric red 79.1 5.6 0.00012 44.7 7.7 54 133-187 309-362 (561)
410 cd08245 CAD Cinnamyl alcohol d 78.8 5.5 0.00012 41.1 7.1 48 544-591 156-204 (330)
411 PRK12845 3-ketosteroid-delta-1 78.7 6.2 0.00013 44.4 7.8 58 129-187 213-275 (564)
412 PRK05868 hypothetical protein; 78.5 5.5 0.00012 42.2 7.0 59 136-195 107-166 (372)
413 TIGR02825 B4_12hDH leukotriene 78.5 5.8 0.00013 40.9 7.1 50 542-591 130-181 (325)
414 cd08277 liver_alcohol_DH_like 78.3 5.7 0.00012 41.8 7.1 49 543-591 177-227 (365)
415 COG0654 UbiH 2-polyprenyl-6-me 78.3 6.3 0.00014 42.0 7.5 54 133-186 103-158 (387)
416 cd08295 double_bond_reductase_ 78.2 5.7 0.00012 41.3 7.0 48 544-591 145-194 (338)
417 PRK07846 mycothione reductase; 77.9 6 0.00013 43.2 7.3 53 135-188 208-260 (451)
418 TIGR02053 MerA mercuric reduct 77.7 6 0.00013 43.3 7.3 54 134-187 207-263 (463)
419 COG0665 DadA Glycine/D-amino a 77.6 6.3 0.00014 41.6 7.2 56 134-190 156-212 (387)
420 PRK12842 putative succinate de 77.4 6.5 0.00014 44.4 7.6 54 134-187 214-272 (574)
421 PRK06912 acoL dihydrolipoamide 77.4 7.5 0.00016 42.5 7.9 54 134-187 211-265 (458)
422 cd08230 glucose_DH Glucose deh 77.3 7.2 0.00016 40.8 7.5 48 544-591 166-217 (355)
423 PRK06115 dihydrolipoamide dehy 77.3 7 0.00015 42.9 7.6 54 134-187 215-273 (466)
424 KOG2820 FAD-dependent oxidored 77.0 8.1 0.00018 39.8 7.1 59 137-196 156-217 (399)
425 PRK13369 glycerol-3-phosphate 77.0 6.1 0.00013 43.8 7.0 56 134-189 155-214 (502)
426 PRK09564 coenzyme A disulfide 76.9 6.1 0.00013 42.9 7.0 54 134-188 191-244 (444)
427 cd08237 ribitol-5-phosphate_DH 76.8 5 0.00011 41.9 6.1 47 545-591 158-207 (341)
428 PRK06175 L-aspartate oxidase; 76.6 9.1 0.0002 41.5 8.2 55 134-188 128-187 (433)
429 PRK10015 oxidoreductase; Provi 76.6 7.5 0.00016 42.1 7.5 50 138-187 112-161 (429)
430 KOG3987 Uncharacterized conser 76.3 0.58 1.3E-05 44.3 -1.0 41 551-592 113-153 (288)
431 cd08294 leukotriene_B4_DH_like 75.9 7.2 0.00016 40.1 6.9 50 542-591 135-186 (329)
432 TIGR01790 carotene-cycl lycope 75.9 7.7 0.00017 41.2 7.3 56 134-190 85-141 (388)
433 PLN02827 Alcohol dehydrogenase 75.7 7.7 0.00017 41.2 7.2 48 544-591 187-236 (378)
434 PRK07364 2-octaprenyl-6-methox 75.4 7.7 0.00017 41.5 7.2 53 134-186 121-177 (415)
435 cd00401 AdoHcyase S-adenosyl-L 75.4 7.7 0.00017 41.6 7.0 51 541-591 191-243 (413)
436 PRK06617 2-octaprenyl-6-methox 75.3 8.6 0.00019 40.7 7.5 52 134-186 104-156 (374)
437 TIGR03452 mycothione_red mycot 75.3 9.4 0.0002 41.7 7.9 53 135-188 211-263 (452)
438 TIGR02374 nitri_red_nirB nitri 75.2 8.1 0.00018 45.4 7.8 53 136-188 184-236 (785)
439 PF13578 Methyltransf_24: Meth 74.7 1.3 2.8E-05 37.5 0.8 44 555-599 1-48 (106)
440 PRK07121 hypothetical protein; 74.4 9.7 0.00021 42.0 7.8 55 133-187 176-236 (492)
441 TIGR03385 CoA_CoA_reduc CoA-di 74.2 7 0.00015 42.2 6.5 53 134-188 179-231 (427)
442 cd08232 idonate-5-DH L-idonate 74.1 8.6 0.00019 39.8 7.0 47 545-591 160-208 (339)
443 KOG4405 GDP dissociation inhib 74.0 35 0.00076 36.2 10.9 133 39-185 196-340 (547)
444 KOG1439 RAB proteins geranylge 73.4 17 0.00037 38.4 8.5 140 39-185 138-284 (440)
445 KOG1122 tRNA and rRNA cytosine 73.3 5.8 0.00013 41.9 5.2 58 543-600 234-293 (460)
446 TIGR02734 crtI_fam phytoene de 73.2 4 8.6E-05 45.2 4.4 33 307-340 457-491 (502)
447 COG1889 NOP1 Fibrillarin-like 73.2 8.4 0.00018 36.7 5.7 53 543-595 69-122 (231)
448 PF12692 Methyltransf_17: S-ad 73.0 10 0.00023 34.2 6.0 48 533-581 12-60 (160)
449 KOG4170 2-enoyl-CoA hydratase/ 73.0 17 0.00036 31.3 7.0 40 396-437 58-97 (113)
450 COG1252 Ndh NADH dehydrogenase 73.0 8.3 0.00018 41.2 6.4 52 131-186 206-258 (405)
451 cd08234 threonine_DH_like L-th 72.9 9.6 0.00021 39.2 7.0 48 544-591 153-202 (334)
452 TIGR03377 glycerol3P_GlpA glyc 72.7 10 0.00022 42.2 7.5 57 133-189 127-189 (516)
453 PLN02927 antheraxanthin epoxid 72.5 9.1 0.0002 43.8 7.0 51 135-187 195-245 (668)
454 cd05285 sorbitol_DH Sorbitol d 72.5 9.3 0.0002 39.7 6.8 48 544-591 156-205 (343)
455 PF05148 Methyltransf_8: Hypot 72.5 5.5 0.00012 38.3 4.5 44 537-582 58-102 (219)
456 cd08242 MDR_like Medium chain 72.1 11 0.00023 38.7 7.0 50 542-591 147-197 (319)
457 PTZ00318 NADH dehydrogenase-li 71.8 10 0.00022 41.0 7.0 50 134-187 228-277 (424)
458 COG4262 Predicted spermidine s 71.7 9.3 0.0002 39.7 6.1 43 550-592 289-332 (508)
459 PRK11101 glpA sn-glycerol-3-ph 71.5 12 0.00025 42.1 7.6 56 134-189 149-210 (546)
460 PTZ00058 glutathione reductase 71.2 13 0.00028 41.8 7.8 54 134-187 278-333 (561)
461 TIGR03169 Nterm_to_SelD pyridi 71.2 9.9 0.00021 40.0 6.7 50 135-188 192-241 (364)
462 PLN02697 lycopene epsilon cycl 70.1 13 0.00027 41.5 7.4 56 134-190 192-248 (529)
463 cd08241 QOR1 Quinone oxidoredu 70.0 12 0.00027 37.8 7.0 48 544-591 133-182 (323)
464 PRK06475 salicylate hydroxylas 69.6 13 0.00029 39.6 7.3 52 135-186 108-163 (400)
465 PF00743 FMO-like: Flavin-bind 69.4 9.4 0.0002 42.6 6.2 54 133-187 86-147 (531)
466 COG0863 DNA modification methy 69.4 17 0.00037 37.0 7.8 58 537-596 210-267 (302)
467 KOG2671 Putative RNA methylase 69.3 3.3 7.2E-05 42.5 2.3 57 542-599 200-263 (421)
468 PF01234 NNMT_PNMT_TEMT: NNMT/ 69.2 3.5 7.5E-05 41.2 2.5 48 549-596 55-102 (256)
469 PRK08244 hypothetical protein; 69.0 13 0.00027 41.1 7.2 51 136-186 102-155 (493)
470 PRK14989 nitrite reductase sub 68.8 14 0.0003 43.7 7.8 55 136-190 189-245 (847)
471 PRK05976 dihydrolipoamide dehy 68.6 15 0.00032 40.4 7.5 55 134-188 221-279 (472)
472 KOG0022 Alcohol dehydrogenase, 68.2 12 0.00026 38.2 6.0 50 543-592 185-236 (375)
473 PF01494 FAD_binding_3: FAD bi 68.0 10 0.00022 39.1 6.0 52 135-186 112-168 (356)
474 cd08296 CAD_like Cinnamyl alco 67.9 14 0.00031 38.2 6.9 48 544-591 157-205 (333)
475 PRK06183 mhpA 3-(3-hydroxyphen 67.8 12 0.00026 41.8 6.8 59 138-196 117-181 (538)
476 COG5044 MRS6 RAB proteins gera 67.8 44 0.00096 35.0 10.0 139 39-185 139-279 (434)
477 TIGR00561 pntA NAD(P) transhyd 67.7 11 0.00025 41.4 6.3 44 548-591 161-205 (511)
478 TIGR01989 COQ6 Ubiquinone bios 67.6 14 0.00031 40.0 7.1 53 134-186 117-179 (437)
479 cd08236 sugar_DH NAD(P)-depend 67.3 14 0.00029 38.4 6.7 46 545-590 154-201 (343)
480 PRK10309 galactitol-1-phosphat 67.3 14 0.0003 38.5 6.7 48 544-591 154-203 (347)
481 PRK07045 putative monooxygenas 67.2 11 0.00024 40.0 6.1 55 135-189 107-164 (388)
482 cd08293 PTGR2 Prostaglandin re 66.9 15 0.00033 38.0 7.0 48 544-591 146-198 (345)
483 PRK07843 3-ketosteroid-delta-1 66.7 18 0.00038 40.7 7.8 55 134-188 208-267 (557)
484 PRK13512 coenzyme A disulfide 66.7 15 0.00033 39.9 7.1 51 134-188 189-239 (438)
485 TIGR02733 desat_CrtD C-3',4' d 66.5 5.6 0.00012 43.9 3.8 32 307-339 457-490 (492)
486 PRK09564 coenzyme A disulfide 66.3 11 0.00023 41.0 5.8 48 141-188 63-113 (444)
487 PF02254 TrkA_N: TrkA-N domain 66.1 9.5 0.00021 32.6 4.4 35 558-592 3-40 (116)
488 COG0604 Qor NADPH:quinone redu 65.9 16 0.00036 37.9 6.9 52 541-592 133-186 (326)
489 cd08278 benzyl_alcohol_DH Benz 65.8 17 0.00037 38.3 7.1 48 544-591 180-229 (365)
490 PRK12843 putative FAD-binding 65.7 16 0.00035 41.3 7.3 55 134-188 221-280 (578)
491 KOG3924 Putative protein methy 65.2 8.5 0.00018 40.4 4.4 56 535-590 177-233 (419)
492 PF02636 Methyltransf_28: Puta 65.2 11 0.00023 37.6 5.1 55 541-595 8-72 (252)
493 PRK12835 3-ketosteroid-delta-1 65.1 18 0.0004 40.9 7.6 54 134-188 213-273 (584)
494 cd08299 alcohol_DH_class_I_II_ 64.7 18 0.0004 38.2 7.1 49 543-591 183-233 (373)
495 PLN02546 glutathione reductase 64.7 19 0.00041 40.5 7.5 54 134-187 293-347 (558)
496 KOG1098 Putative SAM-dependent 64.5 5.4 0.00012 44.0 2.9 36 548-583 42-79 (780)
497 PF01861 DUF43: Protein of unk 64.4 50 0.0011 32.6 9.3 58 540-599 35-93 (243)
498 PRK08401 L-aspartate oxidase; 63.8 18 0.00039 39.7 7.0 53 134-188 120-173 (466)
499 PRK07512 L-aspartate oxidase; 63.7 16 0.00034 40.6 6.6 55 134-188 136-195 (513)
500 COG4716 Myosin-crossreactive a 63.3 34 0.00074 35.9 8.2 92 61-163 160-256 (587)
No 1
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=100.00 E-value=4.6e-55 Score=427.22 Aligned_cols=339 Identities=36% Similarity=0.625 Sum_probs=308.1
Q ss_pred CCcHHHHHHHHHcCCCceeeceeec----------------------CccccChHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 036521 1 VTCPNMMEFLESLGADMEISNMSFS----------------------KKNVLGPYFWQIIREIMKFKDDVLCYLEELENN 58 (602)
Q Consensus 1 ~~y~~~~~l~~~lGi~~~~~~~~~~----------------------~~~~~~~~~~~~~~~i~rf~~~~~~~l~~~~~~ 58 (602)
++|||+++||+++|+++.++.|+|+ +.|+++|.++.++.+++||.+.... +.+
T Consensus 70 ~tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~----~~d- 144 (447)
T COG2907 70 RTYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLA----PSD- 144 (447)
T ss_pred CCcchHHHHHHHcCCCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhcc----chh-
Confidence 5899999999999999999999876 5667789999999999999884111 100
Q ss_pred CCCCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHH
Q 036521 59 PDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVN 138 (602)
Q Consensus 59 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~ 138 (602)
-....++|+++||++++|++.|++.++.||+.++|+++..++..+|+.+|+.|+.+||++.+.+.+.|.++.||+..+++
T Consensus 145 ~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq 224 (447)
T COG2907 145 NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ 224 (447)
T ss_pred hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHH
Confidence 01235799999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeEE
Q 036521 139 KVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIF 218 (602)
Q Consensus 139 ~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~v 218 (602)
+|++.+ +++|.++++|..|.+-.+||.|+..+|++..||+||+||+|++|+.||++ ++|+|+++|+.|.|+.+.+|
T Consensus 225 ~laa~~---~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aV 300 (447)
T COG2907 225 RLAADI---RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAV 300 (447)
T ss_pred HHhccc---cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeE
Confidence 999999 78999999999999999999999999988899999999999999999997 99999999999999999999
Q ss_pred EecCCCCCCCCCCcccccccccC---CCCCeEEEEeccccccCCCCCCCCCeEEEcC--CCCCCcceEEEEEccCCCCCh
Q 036521 219 LHRDKNFMPRNPAAWSAWNFLGG---LDGKACLTYWLNVLQNIGDGETGLPFLVTLN--PDHTPNNTLLKWSTGHPVPSV 293 (602)
Q Consensus 219 l~~d~~l~p~~~~~w~s~n~~~~---~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~--p~~~p~~~l~r~~~~~p~~~~ 293 (602)
+|+|+++||.+..+|++|||... ...+.+++||||.+|++.. . .+.++|+| |..+|..++++..|+||+|++
T Consensus 301 lhtd~~lmPrR~~Awaswny~~~~~~e~~~~~lty~mN~lq~l~~--~-~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~ 377 (447)
T COG2907 301 LHTDASLMPRRLRAWASWNYLGTVQWELCQGSLTYWMNRLQALIS--V-RDYFVTLNNRPWVDPAHVIAERTYPHPLFDP 377 (447)
T ss_pred EeecccccccccccccccceeccccccccCcceeccHHHhhcccC--C-cceEEEecCCcccChHHhhHHhhcCCcCCCH
Confidence 99999999999999999999874 3457799999999999987 4 78899999 777788889999999999999
Q ss_pred hHHHHHHHHHhhcCCCCeEEeccccCCCCChhHHHHHHHHHHHhcCCcccccCCCCCCC
Q 036521 294 AASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMV 352 (602)
Q Consensus 294 ~~~~~~~~l~~lqg~~gl~~aG~~~g~g~~E~av~SG~~aA~~ll~~~~~~~~~~~~~~ 352 (602)
...++|+++.++||.+++||||+|+|.|||||+++||+.+|+++ |+.|+.....++++
T Consensus 378 ~avraqq~l~alqg~~~twfcgAy~g~GFHeDg~~aGl~va~~l-g~~w~~a~~sg~~~ 435 (447)
T COG2907 378 EAVRAQQELWALQGARRTWFCGAYFGRGFHEDGLQAGLAVAEDL-GAPWEAAVPSGRAV 435 (447)
T ss_pred HHHHHHHHHHhhhcCCCCCcchhhhccccchhhhhhHHHHHHhc-CCcccccCccchhh
Confidence 99999999999999999999999999999999999999999998 78777554444443
No 2
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=3.5e-33 Score=293.89 Aligned_cols=176 Identities=31% Similarity=0.495 Sum_probs=151.7
Q ss_pred CcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChHhHHHHHHHHHHhcccccchhhcccccCCCcchhhhhhhhh
Q 036521 398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIAS 477 (602)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (602)
++++|+|+|++++.+++.+|+||||||||+|+|++++ |.+++..++.|..... ..+. ...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~~~-----------~~~~-----~~~ 94 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLDEK-----------LPHH-----LKD 94 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccchhh-----------hhhh-----HHH
Confidence 5789999999999999999999999999999999986 9999988887741100 0000 000
Q ss_pred HHHHH-HhhhccCchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEE
Q 036521 478 ASYFL-RHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556 (602)
Q Consensus 478 ~~~~~-~~~~~~~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLD 556 (602)
....+ .++.+.|++++++++|++|||++|+||+.|+|++|+|||+||++ .++|++||.++++.+++++++++|++|||
T Consensus 95 ~~~~~~~~~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLD 173 (383)
T PRK11705 95 TLRILRARLFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLD 173 (383)
T ss_pred HHHHHHHHHhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 11122 22466899999999999999999999999999999999999964 57999999999999999999999999999
Q ss_pred EecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 557 iGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
||||||.++.++++++|++|+|+|+|++|++.|+++++
T Consensus 174 IGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 174 IGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred eCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence 99999999999998789999999999999999999885
No 3
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.2e-30 Score=253.83 Aligned_cols=118 Identities=45% Similarity=0.748 Sum_probs=112.9
Q ss_pred hhhccCchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchH
Q 036521 484 HISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGT 563 (602)
Q Consensus 484 ~~~~~~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~ 563 (602)
++.+++++++++++|++|||++|+||++|+|++|+|||+||++++.+|++||.+|++.++++++++||++|||||||||+
T Consensus 6 ~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~ 85 (283)
T COG2230 6 RLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG 85 (283)
T ss_pred cccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH
Confidence 34566888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 564 FAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 564 ~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
+++++|+++|++|+|||+|++|.+.+++++++.|++++
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~ 123 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDN 123 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999843
No 4
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.95 E-value=6e-29 Score=249.44 Aligned_cols=112 Identities=49% Similarity=0.835 Sum_probs=88.0
Q ss_pred chHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHH
Q 036521 490 SLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVV 569 (602)
Q Consensus 490 ~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la 569 (602)
++++++++|++|||++|+||++|+|++|+|||+||++++++|++||.+|++.+++++++++|++|||||||||++++++|
T Consensus 2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a 81 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAA 81 (273)
T ss_dssp -S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHH
T ss_pred ccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 570 RQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 570 ~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
+++||+|+|||+|++|+++|+++++++|++++
T Consensus 82 ~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~ 113 (273)
T PF02353_consen 82 ERYGCHVTGITLSEEQAEYARERIREAGLEDR 113 (273)
T ss_dssp HHH--EEEEEES-HHHHHHHHHHHHCSTSSST
T ss_pred HHcCcEEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999864
No 5
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.88 E-value=5.5e-21 Score=208.95 Aligned_cols=273 Identities=14% Similarity=0.141 Sum_probs=184.9
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHH-hhhHHHHHHHHHhcCc-----cc--------------cCC
Q 036521 63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIM-SFSAFSILSFYRNHHL-----LQ--------------LFG 122 (602)
Q Consensus 63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-~~p~~~~l~~~~~~g~-----~~--------------~~~ 122 (602)
.++|+++|++++ +++++.++++.|++.++|++++++++ ...+..+......++. .. ...
T Consensus 135 ~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 213 (462)
T TIGR00562 135 KDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQ 213 (462)
T ss_pred CCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccccccccc
Confidence 469999999985 89999999999999999999988762 2111112111111110 00 011
Q ss_pred CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHH
Q 036521 123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFE 202 (602)
Q Consensus 123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~ 202 (602)
+..+..+.||+++|+++|++.|. .++|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++..++++ ..+.
T Consensus 214 ~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~ 290 (462)
T TIGR00562 214 GQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNS 290 (462)
T ss_pred CCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHH
Confidence 22378899999999999999994 26899999999999998999998888878999999999999999999985 7777
Q ss_pred HHhhccCccccceeEEE-ecCCCCC-----------CCCC----C--ccccccccc-CCCCCeEEEEecccc-----ccC
Q 036521 203 EKRLLGAFQYVYSDIFL-HRDKNFM-----------PRNP----A--AWSAWNFLG-GLDGKACLTYWLNVL-----QNI 258 (602)
Q Consensus 203 ~~~~l~~~~y~~~~~vl-~~d~~l~-----------p~~~----~--~w~s~n~~~-~~~~~~~~t~~~~~~-----~~l 258 (602)
..+.+.+++|.++.++. .++...+ |... . .|.+..+.. .+++...++.+++.. ...
T Consensus 291 ~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~ 370 (462)
T TIGR00562 291 ASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDL 370 (462)
T ss_pred HHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCC
Confidence 88899999999987553 4443211 2111 0 122222221 123344555555321 111
Q ss_pred CCCCCCCCeEE---EcCCCC-CCcc-eEEEEEccCCCCChhHHHHHHHHHh-hc-CCCCeEEeccccCCCCChhHHHHHH
Q 036521 259 GDGETGLPFLV---TLNPDH-TPNN-TLLKWSTGHPVPSVAASKASLELDH-IQ-GKRGIWFCEAYQGYGFHEDGLKAGM 331 (602)
Q Consensus 259 ~~~~~~~~v~~---tl~p~~-~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lq-g~~gl~~aG~~~g~g~~E~av~SG~ 331 (602)
++++..+.+.. .+.+.. .|.. .+++|+++.|+|++++...+.++.. ++ ..+++++||+|+....+|+|+.||.
T Consensus 371 ~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~ 450 (462)
T TIGR00562 371 SENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGK 450 (462)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHH
Confidence 11111011111 111111 2333 5789999999999998887777654 33 3689999999995444899999999
Q ss_pred HHHHHhcC
Q 036521 332 IAAHGVLG 339 (602)
Q Consensus 332 ~aA~~ll~ 339 (602)
++|++++.
T Consensus 451 ~~a~~~~~ 458 (462)
T TIGR00562 451 AAASDVLT 458 (462)
T ss_pred HHHHHHHH
Confidence 99999854
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.87 E-value=1.1e-20 Score=206.73 Aligned_cols=272 Identities=14% Similarity=0.148 Sum_probs=186.9
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHH-hhhHHHHHHHHHhcCcc-----------ccCCCCcEEEe
Q 036521 62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIM-SFSAFSILSFYRNHHLL-----------QLFGRPQWLTV 129 (602)
Q Consensus 62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-~~p~~~~l~~~~~~g~~-----------~~~~~~~~~~~ 129 (602)
.+++|+++|+++ .+++++.++++.|++.++|++++++++ ...+..++++.+.++.+ ...+..+++.+
T Consensus 143 ~~~~sv~~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 221 (463)
T PRK12416 143 TKDTSLALFLES-FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSF 221 (463)
T ss_pred CCCCCHHHHHHH-hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEee
Confidence 468999999998 489999999999999999999998873 23334455555544411 01223467889
Q ss_pred cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccC
Q 036521 130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGA 209 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~ 209 (602)
+||+++|+++|++.|.+ .+|+++++|++|++++++|.|++.+|+++.||+||+|+|++++..|+.. +.....+.+
T Consensus 222 ~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~---~~l~~~~~~ 296 (463)
T PRK12416 222 KGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQS---NELNEQFHT 296 (463)
T ss_pred CCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCC---cchhHHHhc
Confidence 99999999999999952 5799999999999999999998888877899999999999999999974 234455778
Q ss_pred ccccceeEE-EecCCCC--CC---------CCC------Cccccccccc-CCCCCeEEEEecc---c----cccCCCCCC
Q 036521 210 FQYVYSDIF-LHRDKNF--MP---------RNP------AAWSAWNFLG-GLDGKACLTYWLN---V----LQNIGDGET 263 (602)
Q Consensus 210 ~~y~~~~~v-l~~d~~l--~p---------~~~------~~w~s~n~~~-~~~~~~~~t~~~~---~----~~~l~~~~~ 263 (602)
+.|.++.++ +.++... .| ... ..|.+..|.. .++....+++.++ . +..+++++.
T Consensus 297 ~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~ 376 (463)
T PRK12416 297 FKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEEL 376 (463)
T ss_pred CCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHH
Confidence 888777544 4555321 12 111 1333333333 2333444444432 1 112222111
Q ss_pred C----CCeEEEcCCCCCCcc-eEEEEEccCCCCChhHHHHHHHHHh-hc-CCCCeEEeccccCCCCChhHHHHHHHHHHH
Q 036521 264 G----LPFLVTLNPDHTPNN-TLLKWSTGHPVPSVAASKASLELDH-IQ-GKRGIWFCEAYQGYGFHEDGLKAGMIAAHG 336 (602)
Q Consensus 264 ~----~~v~~tl~p~~~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lq-g~~gl~~aG~~~g~g~~E~av~SG~~aA~~ 336 (602)
. +++...++....|.. .+++|+++.|+|..++...++.+.. ++ ..+++++||+|+....+|+|++||.++|++
T Consensus 377 ~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~ 456 (463)
T PRK12416 377 VRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANE 456 (463)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHH
Confidence 0 111111222222332 4789999999999998888777764 43 368999999998544489999999999999
Q ss_pred hcC
Q 036521 337 VLG 339 (602)
Q Consensus 337 ll~ 339 (602)
|+.
T Consensus 457 i~~ 459 (463)
T PRK12416 457 IIA 459 (463)
T ss_pred HHH
Confidence 964
No 7
>PLN02576 protoporphyrinogen oxidase
Probab=99.85 E-value=3.3e-20 Score=204.63 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=184.3
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhh-HHHHHHHHHhcCc-----------------------
Q 036521 62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFS-AFSILSFYRNHHL----------------------- 117 (602)
Q Consensus 62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p-~~~~l~~~~~~g~----------------------- 117 (602)
.+++|+++|++++ +++++.++++.|++.++|++++++++... +..+..+.+.+|.
T Consensus 143 ~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~ 221 (496)
T PLN02576 143 GREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDP 221 (496)
T ss_pred CCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccccc
Confidence 4689999999985 89999999999999999999998873221 1122222221211
Q ss_pred -cccCCCCcEEEecCCcHhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCe-EEEEe--CCCc-EEecCEEEEecChHHH
Q 036521 118 -LQLFGRPQWLTVRSRSHSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEG-RTEVR--GDGF-QGFYDGCIMAVHAPDA 191 (602)
Q Consensus 118 -~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~g-v~v~~--~~g~-~~~ad~VI~A~p~~~a 191 (602)
+....+...+.++||+++|+++|++.+ + ++|++|++|++|++.+++ |.|+. .+|+ ++.||+||+|+|++++
T Consensus 222 ~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l 298 (496)
T PLN02576 222 RLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVV 298 (496)
T ss_pred ccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHH
Confidence 000123457889999999999999999 5 689999999999998887 76654 3453 6899999999999999
Q ss_pred HhhccCCCCHHHHhhccCccccceeEE-EecCCCCCCC------CC-----------------Cccccccccc-CCCCCe
Q 036521 192 LRILGNQSTFEEKRLLGAFQYVYSDIF-LHRDKNFMPR------NP-----------------AAWSAWNFLG-GLDGKA 246 (602)
Q Consensus 192 ~~ll~~~~~~~~~~~l~~~~y~~~~~v-l~~d~~l~p~------~~-----------------~~w~s~n~~~-~~~~~~ 246 (602)
..++.+ ..++..+.+.+++|.++.++ ++++...++. .. ..|.+..+.. .+++..
T Consensus 299 ~~ll~~-~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~ 377 (496)
T PLN02576 299 SEMLRP-KSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRV 377 (496)
T ss_pred HHHhcc-cCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCE
Confidence 999985 77888999999999998754 4544432211 00 0122222222 133344
Q ss_pred EEEEeccc-----cccCCCCCCCCCeEE----EcCCCC--CCcc-eEEEEEccCCCCChhHHHHHHHHHh-hcCC--CCe
Q 036521 247 CLTYWLNV-----LQNIGDGETGLPFLV----TLNPDH--TPNN-TLLKWSTGHPVPSVAASKASLELDH-IQGK--RGI 311 (602)
Q Consensus 247 ~~t~~~~~-----~~~l~~~~~~~~v~~----tl~p~~--~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~--~gl 311 (602)
.++.+++. ...+++++..+.+.+ .+.... .|.. .+++|+++.|+|++++......+.. ++.. +++
T Consensus 378 ~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l 457 (496)
T PLN02576 378 LLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGL 457 (496)
T ss_pred EEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCE
Confidence 45544432 111222111011111 122111 2333 3679999999999998777666655 4444 799
Q ss_pred EEeccccCCCCChhHHHHHHHHHHHhcCC
Q 036521 312 WFCEAYQGYGFHEDGLKAGMIAAHGVLGK 340 (602)
Q Consensus 312 ~~aG~~~g~g~~E~av~SG~~aA~~ll~~ 340 (602)
++||+|+....+|+|+.||.++|++|+..
T Consensus 458 ~~aG~~~~g~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 458 FLGGNYRGGVALGKCVESGYEAADLVISY 486 (496)
T ss_pred EEeccccCCccHHHHHHHHHHHHHHHHHH
Confidence 99999996555899999999999999653
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.83 E-value=2.9e-19 Score=188.93 Aligned_cols=269 Identities=20% Similarity=0.265 Sum_probs=188.5
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhh-hHHHHHHHHHhcCcc-c-c---------CCCCcEEEe
Q 036521 62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSF-SAFSILSFYRNHHLL-Q-L---------FGRPQWLTV 129 (602)
Q Consensus 62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~-p~~~~l~~~~~~g~~-~-~---------~~~~~~~~~ 129 (602)
.+++|+++|+++ ++++++.++++.|++.++|++++++++.. ....+.+..+.++.+ . . .....+.++
T Consensus 132 ~~d~sv~~f~r~-~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 210 (444)
T COG1232 132 KQDISVGEFIRR-RFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL 210 (444)
T ss_pred CCCcCHHHHHHH-HHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence 478999999999 59999999999999999999999887322 222344444444422 0 0 112468899
Q ss_pred cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccC
Q 036521 130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGA 209 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~ 209 (602)
+||+++++++|++.+ ..+|+++++|+.|.++..++.+++.+|+.+.||+||+|+|++.+.+++++ ......+..
T Consensus 211 ~gG~~~l~~al~~~l---~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~ 284 (444)
T COG1232 211 RGGLQSLIEALAEKL---EAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKE 284 (444)
T ss_pred CccHHHHHHHHHHHh---hhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhh
Confidence 999999999999999 45699999999999998888888888888999999999999999999994 455667788
Q ss_pred ccccceeEE-EecCCC---CCCC--------C-----CCcccccccccC-CCCCeEEEEecccc--c---cCCCCCCCCC
Q 036521 210 FQYVYSDIF-LHRDKN---FMPR--------N-----PAAWSAWNFLGG-LDGKACLTYWLNVL--Q---NIGDGETGLP 266 (602)
Q Consensus 210 ~~y~~~~~v-l~~d~~---l~p~--------~-----~~~w~s~n~~~~-~~~~~~~t~~~~~~--~---~l~~~~~~~~ 266 (602)
+.|....+| +..+.. ..|. . ...|.|..++.. +.+...++..+... + .+.++|....
T Consensus 285 ~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~ 364 (444)
T COG1232 285 LQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAA 364 (444)
T ss_pred ccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHH
Confidence 888665444 334332 1221 1 125555444442 33555555443211 1 1111111000
Q ss_pred eE---EEcCCC-CCCc-ceEEEEEccCCCCChhHHHHHHHHHh-hc-CCCCeEEeccccC-CCCChhHHHHHHHHHHHhc
Q 036521 267 FL---VTLNPD-HTPN-NTLLKWSTGHPVPSVAASKASLELDH-IQ-GKRGIWFCEAYQG-YGFHEDGLKAGMIAAHGVL 338 (602)
Q Consensus 267 v~---~tl~p~-~~p~-~~l~r~~~~~p~~~~~~~~~~~~l~~-lq-g~~gl~~aG~~~g-~g~~E~av~SG~~aA~~ll 338 (602)
+. ..+.+. ..|. ..+.||.++.|+|.+++.+.+..+.. ++ -++|+..+|.|.. +| +.||+.+|..+|++|+
T Consensus 365 ~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g-~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 365 VLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVG-LPDCIAAGKEAAEQLL 443 (444)
T ss_pred HHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCC-chHHHHHHHHHHHHhh
Confidence 11 111221 2232 24789999999999999999888876 54 4699999999984 46 6899999999999884
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.81 E-value=1.3e-17 Score=181.80 Aligned_cols=271 Identities=15% Similarity=0.172 Sum_probs=178.3
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHh-hhHHHHHHHHHhcCcc---------cc--CCCCcEEEe
Q 036521 62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMS-FSAFSILSFYRNHHLL---------QL--FGRPQWLTV 129 (602)
Q Consensus 62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~-~p~~~~l~~~~~~g~~---------~~--~~~~~~~~~ 129 (602)
.+++|+++|+++ .+++.+.+.++.|++.++|++++++++. .....+..+...++.+ .. ..++.++.+
T Consensus 138 ~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (451)
T PRK11883 138 GQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTL 216 (451)
T ss_pred CCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEee
Confidence 468999999998 5899999999999999999999887632 2222233333322210 00 124578899
Q ss_pred cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccC
Q 036521 130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGA 209 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~ 209 (602)
++|+++++++|++.++.+ +|+++++|++|+.++++|.|++.+|+++.||+||+|+|++++.+++.+ +...+.+.+
T Consensus 217 ~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~---~~~~~~~~~ 291 (451)
T PRK11883 217 KGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA---PPAFALFKT 291 (451)
T ss_pred ccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC---hhHHHHHhC
Confidence 999999999999999421 899999999999988899888888888999999999999999999773 334667788
Q ss_pred ccccceeEE-EecCCCC--CCCC--------C------Cccccccccc-CCCCCeEEEEecccc-----ccCCCCCCCCC
Q 036521 210 FQYVYSDIF-LHRDKNF--MPRN--------P------AAWSAWNFLG-GLDGKACLTYWLNVL-----QNIGDGETGLP 266 (602)
Q Consensus 210 ~~y~~~~~v-l~~d~~l--~p~~--------~------~~w~s~n~~~-~~~~~~~~t~~~~~~-----~~l~~~~~~~~ 266 (602)
++|.++.++ +.++..+ .|.. . ..|.+..+.. .+.+...+....+.. ...++++..+.
T Consensus 292 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (451)
T PRK11883 292 IPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAF 371 (451)
T ss_pred CCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHH
Confidence 888887543 4455442 1110 0 0121111111 122333333322211 11111101011
Q ss_pred eEEE----cCCCCCCc-ceEEEEEccCCCCChhHHHHHHHHHh-hcCCCCeEEeccccCCCCChhHHHHHHHHHHHhc
Q 036521 267 FLVT----LNPDHTPN-NTLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVL 338 (602)
Q Consensus 267 v~~t----l~p~~~p~-~~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~~g~g~~E~av~SG~~aA~~ll 338 (602)
+... ++....+. ..+.+|+++.|.+.+++......+.. +...+++++||+|+..+-+|+|+.||+.+|++|+
T Consensus 372 ~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 372 VLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIAQAKRAAARLL 449 (451)
T ss_pred HHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHHHHHHHHHHHH
Confidence 1111 12111222 24779999999998887666555544 3335799999999964448999999999999985
No 10
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.80 E-value=1.4e-17 Score=179.39 Aligned_cols=268 Identities=19% Similarity=0.180 Sum_probs=169.0
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHH-HH
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYV-NK 139 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~-~~ 139 (602)
..+++|+++|++++++++++.+.++.|++.++|+++++++ |+.+++..+... +........+..++||+++++ ++
T Consensus 127 ~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---s~~~~~~~~~~~-~~~~~~~~~~~~~~gG~~~~~~~~ 202 (419)
T TIGR03467 127 ALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERA---SAALAAKVLRDS-FLAGRAASDLLLPRVPLSELFPEP 202 (419)
T ss_pred ccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHH-HhcCCCcceeeeeCCCHHHHHHHH
Confidence 3478999999999888999999999999999999988886 344444444321 111112234566788887776 45
Q ss_pred HHHHHhcCCCeEEeCCceeEEEecCCeEEEEe-CCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeE-
Q 036521 140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVR-GDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI- 217 (602)
Q Consensus 140 la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~-~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~- 217 (602)
|++.|.++|++|+++++|++|..++++|.++. .+|+++.||+||+|+|++++.+|++. +...+.+.+++|.++.+
T Consensus 203 l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v 279 (419)
T TIGR03467 203 ARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTV 279 (419)
T ss_pred HHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEE
Confidence 88888778999999999999999888876543 35667899999999999999999874 24566788999988764
Q ss_pred EEecCCCC-CCCC-------CCcccccccccCCCCCeEEEEeccc---cccCCCCCCCCCeEEE---cCCCC-CCcc---
Q 036521 218 FLHRDKNF-MPRN-------PAAWSAWNFLGGLDGKACLTYWLNV---LQNIGDGETGLPFLVT---LNPDH-TPNN--- 279 (602)
Q Consensus 218 vl~~d~~l-~p~~-------~~~w~s~n~~~~~~~~~~~t~~~~~---~~~l~~~~~~~~v~~t---l~p~~-~p~~--- 279 (602)
.++++..+ .|.. ...|... +...+.....+.+.+.. ....++++..+.+... +.|.. .+.+
T Consensus 280 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~ 358 (419)
T TIGR03467 280 HLRLDRAVRLPAPMVGLVGGLAQWLFD-RGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWA 358 (419)
T ss_pred EEEeCCCcCCCCCeeeecCCceeEEEE-CCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccce
Confidence 45677665 2322 1122111 11111111233333221 1112221111111111 11211 1111
Q ss_pred eEEEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCCC---CChhHHHHHHHHHHHhc
Q 036521 280 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYG---FHEDGLKAGMIAAHGVL 338 (602)
Q Consensus 280 ~l~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~g---~~E~av~SG~~aA~~ll 338 (602)
.+.+|....+.+.++.... +....+..++++|||||+..+ .+|+|+.||.+||++|+
T Consensus 359 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 359 RVIKEKRATFAATPGLNRL--RPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred EEEEccCCccccCCccccc--CCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 2456655555554443211 111124568999999998544 69999999999999885
No 11
>PLN02487 zeta-carotene desaturase
Probab=99.78 E-value=8.2e-18 Score=185.19 Aligned_cols=273 Identities=12% Similarity=0.056 Sum_probs=173.9
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh-HHHHH
Q 036521 62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS-YVNKV 140 (602)
Q Consensus 62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~-l~~~l 140 (602)
.+++|+++|+++++.++++.+++|+|++.+++++++++++...+..++.++... .......-++||+.+ +++++
T Consensus 227 ~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~-----~~~~~l~~~~Gg~~~~l~~pl 301 (569)
T PLN02487 227 LDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATK-----TEASLLRMLKGSPDVRLSGPI 301 (569)
T ss_pred ccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhc-----CCcceeeecCCCchHHHHHHH
Confidence 467999999999988888999999999999999999998545454455443211 222345566899995 99999
Q ss_pred HHHHhcCCCeEEeCCceeEEEecC--Ce----EEEEe---CCCcEEecCEEEEecChHHHHhhccCCCCH--HHHhhccC
Q 036521 141 IALLESLGCQIKTGCEVCSVLQYD--EG----RTEVR---GDGFQGFYDGCIMAVHAPDALRILGNQSTF--EEKRLLGA 209 (602)
Q Consensus 141 a~~l~~~g~~v~l~t~V~~i~~~~--~g----v~v~~---~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~--~~~~~l~~ 209 (602)
++.|+++|++|+++++|++|..+. +| +.|+. .+++.+.+|.||+|+|++.+.+|+++ ..+ .+...+..
T Consensus 302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~-~~~~~~~~~~l~~ 380 (569)
T PLN02487 302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPE-QWREYEFFDNIYK 380 (569)
T ss_pred HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCc-hhhccHHHhHHhc
Confidence 999999999999999999999863 33 23444 23446789999999999999999985 322 23455666
Q ss_pred ccccceeEE-EecCCCCCCCC--------------CC----ccccccc--c---cC------CCCCeEEEEec---cccc
Q 036521 210 FQYVYSDIF-LHRDKNFMPRN--------------PA----AWSAWNF--L---GG------LDGKACLTYWL---NVLQ 256 (602)
Q Consensus 210 ~~y~~~~~v-l~~d~~l~p~~--------------~~----~w~s~n~--~---~~------~~~~~~~t~~~---~~~~ 256 (602)
+.+.++.++ +++|..+.... .. ..+.|.| . .. +.....+.+.+ +.+.
T Consensus 381 L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~ 460 (569)
T PLN02487 381 LVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYM 460 (569)
T ss_pred CCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCcccc
Confidence 777777544 56675442111 01 0112222 0 00 00011222222 2244
Q ss_pred cCCCCCCCCCeE---EEcCCCCCCcce--EEEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCCCC---ChhHHH
Q 036521 257 NIGDGETGLPFL---VTLNPDHTPNNT--LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGF---HEDGLK 328 (602)
Q Consensus 257 ~l~~~~~~~~v~---~tl~p~~~p~~~--l~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~g~---~E~av~ 328 (602)
.+++++..+.+. ..++|......+ ..+.++..++|...+.....++.+....+|+|+||||+..++ +|+||+
T Consensus 461 ~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~ 540 (569)
T PLN02487 461 PLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATL 540 (569)
T ss_pred CCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHH
Confidence 444422211111 123444322222 335567777776655333333333445789999999985554 999999
Q ss_pred HHHHHHHHhcCC
Q 036521 329 AGMIAAHGVLGK 340 (602)
Q Consensus 329 SG~~aA~~ll~~ 340 (602)
||.+||+.|+..
T Consensus 541 SG~~AA~~i~~~ 552 (569)
T PLN02487 541 SGRQAAAYICEA 552 (569)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 12
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.76 E-value=6.9e-17 Score=176.15 Aligned_cols=269 Identities=13% Similarity=0.120 Sum_probs=158.5
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCC-cHhHHHH
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSR-SHSYVNK 139 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG-~~~l~~~ 139 (602)
..+++|+.+|++++++++.+.+.++.|++.++++.+++++ ++.+++.++.. .+....+.......|+ ++.+.++
T Consensus 144 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~---S~~~~~~~l~~--~~~~~~g~~~~~~~g~~~~~l~~~ 218 (453)
T TIGR02731 144 EQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDEL---SMTVVLTALNR--FLQERHGSKMAFLDGAPPERLCQP 218 (453)
T ss_pred hhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHH--HHhcCCCCeeEeecCCChHHHHHH
Confidence 3578999999999999999999999999999999988875 34443333321 0000111111122232 5778999
Q ss_pred HHHHHhcCCCeEEeCCceeEEEecCCe-E-EEEeCCCc-----EEecCEEEEecChHHHHhhccCCCC-HHHHhhccCcc
Q 036521 140 VIALLESLGCQIKTGCEVCSVLQYDEG-R-TEVRGDGF-----QGFYDGCIMAVHAPDALRILGNQST-FEEKRLLGAFQ 211 (602)
Q Consensus 140 la~~l~~~g~~v~l~t~V~~i~~~~~g-v-~v~~~~g~-----~~~ad~VI~A~p~~~a~~ll~~~~~-~~~~~~l~~~~ 211 (602)
|++.|.++|++|+++++|++|.+++++ + .|++.+|+ ++.+|+||+|+|++.+.++|+.... ....+.+.+++
T Consensus 219 l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~ 298 (453)
T TIGR02731 219 IVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLE 298 (453)
T ss_pred HHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCC
Confidence 999998889999999999999876555 3 34444443 6889999999999999999874221 34556677777
Q ss_pred cccee-EEEecCCCCCCCC-------CC-----cccccccccCCCCCeEEEEeccc---cccCCCCCCCCCeEE---EcC
Q 036521 212 YVYSD-IFLHRDKNFMPRN-------PA-----AWSAWNFLGGLDGKACLTYWLNV---LQNIGDGETGLPFLV---TLN 272 (602)
Q Consensus 212 y~~~~-~vl~~d~~l~p~~-------~~-----~w~s~n~~~~~~~~~~~t~~~~~---~~~l~~~~~~~~v~~---tl~ 272 (602)
|.++. +.+..+.++.+.. .. .|+...+...+++...+.+.++. +..+++++..+.+.+ .+.
T Consensus 299 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~ 378 (453)
T TIGR02731 299 GVPVINVHIWFDRKLTTVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLF 378 (453)
T ss_pred CCcEEEEEEEEccccCCCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhC
Confidence 76654 3445555543211 10 11111111112223444444432 222333212111221 122
Q ss_pred CCC----CCcc-eEEEE---EccCCCCChhHHHHHHHHHhh-cCCCCeEEeccccC---CCCChhHHHHHHHHHHHh
Q 036521 273 PDH----TPNN-TLLKW---STGHPVPSVAASKASLELDHI-QGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHGV 337 (602)
Q Consensus 273 p~~----~p~~-~l~r~---~~~~p~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~l 337 (602)
|.. .+.. +-+.| .++.+...++. ....+.+ .+.++++|||+|+. .|.+|+|+.||.+||++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~---~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 379 PNHIKADSPAKILKYKVVKTPRSVYKTTPGR---QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred CcccCCCCCceEEEEEEEECCCceeccCCCC---hhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 211 1222 22333 22322222221 1222333 45789999999984 357999999999999986
No 13
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.75 E-value=1.3e-17 Score=182.07 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=165.5
Q ss_pred CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh-HHHHH
Q 036521 62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS-YVNKV 140 (602)
Q Consensus 62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~-l~~~l 140 (602)
.+++|+++|+++++.++...++++.|++.+++++++++++...+..+++++... ..+....-++||.++ +.++|
T Consensus 151 ~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~-----~~~s~~~~~~g~~~~~l~~pl 225 (474)
T TIGR02732 151 LDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAK-----TEASKLRMLKGSPDKYLTKPI 225 (474)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----CCcceeeeecCCcchhHHHHH
Confidence 367999999999988888899999999999999999887444443333444321 222234445677666 56779
Q ss_pred HHHHhcCCCeEEeCCceeEEEecC--CeE----EEEeCCC---cEEecCEEEEecChHHHHhhccCCCC--HHHHhhccC
Q 036521 141 IALLESLGCQIKTGCEVCSVLQYD--EGR----TEVRGDG---FQGFYDGCIMAVHAPDALRILGNQST--FEEKRLLGA 209 (602)
Q Consensus 141 a~~l~~~g~~v~l~t~V~~i~~~~--~gv----~v~~~~g---~~~~ad~VI~A~p~~~a~~ll~~~~~--~~~~~~l~~ 209 (602)
.+.|.++|++|+++++|++|+.++ +++ .|...+| +++.||+||+|+|++.+.+|+++ .. ......+.+
T Consensus 226 ~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~-~~~~~~~~~~l~~ 304 (474)
T TIGR02732 226 LEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQ-EWRQFEEFDNIYK 304 (474)
T ss_pred HHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCCh-hhhcCHHHhhHhc
Confidence 999999999999999999998854 332 2233333 45889999999999999999985 32 235667788
Q ss_pred ccccceeEE-EecCCCCCCCC-------------CC-----ccccccccc------C----CCCCeE-EEEec---cccc
Q 036521 210 FQYVYSDIF-LHRDKNFMPRN-------------PA-----AWSAWNFLG------G----LDGKAC-LTYWL---NVLQ 256 (602)
Q Consensus 210 ~~y~~~~~v-l~~d~~l~p~~-------------~~-----~w~s~n~~~------~----~~~~~~-~t~~~---~~~~ 256 (602)
+.|.++.++ +.+|..+.... .. ....|.|.. + +.+... +...+ +.+.
T Consensus 305 l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (474)
T TIGR02732 305 LDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWM 384 (474)
T ss_pred CCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhc
Confidence 888888654 46664332110 00 111222200 0 111111 11111 2233
Q ss_pred cCCCCCCCCCeE---EEcCCCCCCcceE--EEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCCCC---ChhHHH
Q 036521 257 NIGDGETGLPFL---VTLNPDHTPNNTL--LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGF---HEDGLK 328 (602)
Q Consensus 257 ~l~~~~~~~~v~---~tl~p~~~p~~~l--~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~g~---~E~av~ 328 (602)
.+++++..+.+. ..+.|......++ .+.++.+++|...+.....++......+|+|+||||+..++ +|+|++
T Consensus 385 ~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~ 464 (474)
T TIGR02732 385 PESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATL 464 (474)
T ss_pred CCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHH
Confidence 333322211221 2334432222222 24566666665221111122233345789999999997644 999999
Q ss_pred HHHHHHHHhc
Q 036521 329 AGMIAAHGVL 338 (602)
Q Consensus 329 SG~~aA~~ll 338 (602)
||.+||+.|+
T Consensus 465 sG~~aA~~i~ 474 (474)
T TIGR02732 465 SGRQAAAAIL 474 (474)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 14
>PLN02612 phytoene desaturase
Probab=99.75 E-value=3.1e-17 Score=182.49 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=115.1
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCc-HhHHHH
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRS-HSYVNK 139 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~-~~l~~~ 139 (602)
..+++|+.+|++++++++.+.+.++.||+.++++.++++++ +..++..+.. ++....+.......|+. ..+.++
T Consensus 239 ~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S---~~~~l~~l~~--~l~~~~gs~~~~~~G~~~~~l~~~ 313 (567)
T PLN02612 239 AQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELS---MQCILIALNR--FLQEKHGSKMAFLDGNPPERLCMP 313 (567)
T ss_pred hcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhh---HHHHHHHHHH--HHhccCCceEeeecCCchHHHHHH
Confidence 45789999999999999999999999999999999888763 3333322221 11111222333334443 578899
Q ss_pred HHHHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEecChHHHHhhccCCC-CHHHHhhccCcccccee
Q 036521 140 VIALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMAVHAPDALRILGNQS-TFEEKRLLGAFQYVYSD 216 (602)
Q Consensus 140 la~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~-~~~~~~~l~~~~y~~~~ 216 (602)
|++.|.++|++|+++++|++|..++++ +.|.+.+|+++.+|+||+|+|++.+.+|++... .....+.+.++.+.++.
T Consensus 314 l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~ 393 (567)
T PLN02612 314 IVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVI 393 (567)
T ss_pred HHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeE
Confidence 999998889999999999999987666 346667787889999999999999988887422 22445556667776654
Q ss_pred -EEEecCCCC
Q 036521 217 -IFLHRDKNF 225 (602)
Q Consensus 217 -~vl~~d~~l 225 (602)
+.+.+|..+
T Consensus 394 ~v~l~~dr~~ 403 (567)
T PLN02612 394 NVHIWFDRKL 403 (567)
T ss_pred EEEEEECccc
Confidence 345667664
No 15
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.74 E-value=1.2e-16 Score=162.22 Aligned_cols=273 Identities=13% Similarity=0.129 Sum_probs=191.5
Q ss_pred CCCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhH-HhhhHHHHHHHHHhcCcccc------------------
Q 036521 60 DIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGI-MSFSAFSILSFYRNHHLLQL------------------ 120 (602)
Q Consensus 60 ~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~-~~~p~~~~l~~~~~~g~~~~------------------ 120 (602)
+...++|+.+|++| +|++++.+++++||+.+||+.|+.++ ++..+..+.+.++.||.+..
T Consensus 151 ~~~~dESV~sF~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~ 229 (491)
T KOG1276|consen 151 DPSADESVESFARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETA 229 (491)
T ss_pred CCCccccHHHHHHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccch
Confidence 34568999999999 59999999999999999999999887 55566666677777772210
Q ss_pred ------CCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecC-CeEEEEe--CCCc-EEecCEEEEecChHH
Q 036521 121 ------FGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EGRTEVR--GDGF-QGFYDGCIMAVHAPD 190 (602)
Q Consensus 121 ------~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~gv~v~~--~~g~-~~~ad~VI~A~p~~~ 190 (602)
.+.-.++.++||++.+++++.+.|.++...|.++-++..+.... ++|.++. .++. ....+++..|+|+..
T Consensus 230 ~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k 309 (491)
T KOG1276|consen 230 LSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVK 309 (491)
T ss_pred hhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHH
Confidence 11223567999999999999999987777788999999887654 4476654 4554 357888888999999
Q ss_pred HHhhccCCCCHHHHhhccCccccceeEEEec--CC----C------CCCCCC--------CcccccccccC-CCCCeEEE
Q 036521 191 ALRILGNQSTFEEKRLLGAFQYVYSDIFLHR--DK----N------FMPRNP--------AAWSAWNFLGG-LDGKACLT 249 (602)
Q Consensus 191 a~~ll~~~~~~~~~~~l~~~~y~~~~~vl~~--d~----~------l~p~~~--------~~w~s~n~~~~-~~~~~~~t 249 (602)
.+.+++. ..+.....|..++|.++.+|..+ ++ . ++|... ..+.|..|... +++ .+|
T Consensus 310 ~a~ll~~-~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~--~vt 386 (491)
T KOG1276|consen 310 LAKLLRG-LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP--KVT 386 (491)
T ss_pred hhhhccc-cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCc--eEE
Confidence 9999996 78888999999999999877643 21 1 345211 14566666553 222 344
Q ss_pred Eeccc--ccc---CCCCCCCCCeE--------EEcCCCCCCcce-EEEEEccCCCCChhHHHHHHHHHh-hcCC--CCeE
Q 036521 250 YWLNV--LQN---IGDGETGLPFL--------VTLNPDHTPNNT-LLKWSTGHPVPSVAASKASLELDH-IQGK--RGIW 312 (602)
Q Consensus 250 ~~~~~--~~~---l~~~~~~~~v~--------~tl~p~~~p~~~-l~r~~~~~p~~~~~~~~~~~~l~~-lqg~--~gl~ 312 (602)
+.++. ..+ +.. ..+++. .++.....|..+ ++-|....|||+++|-+.+..+.. ++.. .+++
T Consensus 387 vm~gg~~~~n~~~~~~--S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~ 464 (491)
T KOG1276|consen 387 VMMGGGGSTNTSLAVP--SPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLF 464 (491)
T ss_pred EEecccccccCcCCCC--CHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceE
Confidence 43321 111 111 001111 122222234433 568888999999999888877766 5543 5999
Q ss_pred EeccccCCCCChhHHHHHHHHHHHhc
Q 036521 313 FCEAYQGYGFHEDGLKAGMIAAHGVL 338 (602)
Q Consensus 313 ~aG~~~g~g~~E~av~SG~~aA~~ll 338 (602)
+||+|++.--+.|||.||+.+|..++
T Consensus 465 l~G~~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 465 LGGNHYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred eeccccCCCChhHHHHhhHHHHHhhc
Confidence 99999843337899999999998764
No 16
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.73 E-value=1.2e-18 Score=166.96 Aligned_cols=200 Identities=17% Similarity=0.208 Sum_probs=145.8
Q ss_pred EEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc-EEecCEEEEecChHHHHhhccC---CCCHH
Q 036521 127 LTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF-QGFYDGCIMAVHAPDALRILGN---QSTFE 202 (602)
Q Consensus 127 ~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~-~~~ad~VI~A~p~~~a~~ll~~---~~~~~ 202 (602)
+....||++|++.|+..| +|.++++|++|.+.++.|+|++++|. ..+||.||+|+|+|++..||.. ....+
T Consensus 101 yvg~pgmsalak~LAtdL-----~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~ 175 (331)
T COG3380 101 YVGEPGMSALAKFLATDL-----TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAA 175 (331)
T ss_pred cccCcchHHHHHHHhccc-----hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHH
Confidence 677889999999999999 89999999999999999999986654 5689999999999999999953 14556
Q ss_pred HHhhccCccccceeEE-EecCCCC-CC-------CCCCcccccccccC--CCCCeEEEEeccc---cccCCCCCCCCCeE
Q 036521 203 EKRLLGAFQYVYSDIF-LHRDKNF-MP-------RNPAAWSAWNFLGG--LDGKACLTYWLNV---LQNIGDGETGLPFL 268 (602)
Q Consensus 203 ~~~~l~~~~y~~~~~v-l~~d~~l-~p-------~~~~~w~s~n~~~~--~~~~~~~t~~~~~---~~~l~~~~~~~~v~ 268 (602)
.+..+..+.|.||+++ +++...+ .| .....|.+.+-+++ ......++++++. .+|+.. ..+.+.
T Consensus 176 l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~--~~e~~i 253 (331)
T COG3380 176 LRAALADVVYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH--PAEQVI 253 (331)
T ss_pred HHHhhccceehhHHHHHhcCCccCCCCCCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC--CHHHHH
Confidence 8889999999999864 4555322 22 23458888886663 1223367777653 344444 212322
Q ss_pred -------EEcCCCCCCcc---eEEEEEccCCCCChhHHHHHHHHHhh-cCCCCeEEeccccCCCCChhHHHHHHHHHHHh
Q 036521 269 -------VTLNPDHTPNN---TLLKWSTGHPVPSVAASKASLELDHI-QGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337 (602)
Q Consensus 269 -------~tl~p~~~p~~---~l~r~~~~~p~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g~g~~E~av~SG~~aA~~l 337 (602)
+++.+...|++ ..++|+|++|.-... ..... +..-+++.|||||++|++|+|+.||+.+|+.|
T Consensus 254 ~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~------~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i 327 (331)
T COG3380 254 VALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVA------GPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHI 327 (331)
T ss_pred HHHHHhhhhccCCCCCcchHHHhhcccccccccccc------CCccccCCCCceeeecccccCcchhHHHhccHHHHHHH
Confidence 23333222333 588999999954222 11112 45789999999999999999999999999998
Q ss_pred cC
Q 036521 338 LG 339 (602)
Q Consensus 338 l~ 339 (602)
+.
T Consensus 328 ~~ 329 (331)
T COG3380 328 LN 329 (331)
T ss_pred Hh
Confidence 64
No 17
>PRK07233 hypothetical protein; Provisional
Probab=99.73 E-value=2.8e-15 Score=162.43 Aligned_cols=271 Identities=16% Similarity=0.153 Sum_probs=172.9
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCcccc-CCCCcEEEecCCcHhHHHH
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQL-FGRPQWLTVRSRSHSYVNK 139 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~-~~~~~~~~~~gG~~~l~~~ 139 (602)
..+++|+++|++++ +++...+.++.|++..+|+.+++++ ++..++..+...+.... ....++..++||++.++++
T Consensus 128 ~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 203 (434)
T PRK07233 128 ALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDV---SAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDA 203 (434)
T ss_pred ccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCcccc---CHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHH
Confidence 34679999999996 5788888999999999999988875 44445444432221100 0123466789999999999
Q ss_pred HHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeE-E
Q 036521 140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI-F 218 (602)
Q Consensus 140 la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~-v 218 (602)
|++.+.+.|++|+++++|++|+.+++++.++..+++++.||+||+|+|++.+.++++. ..+...+.+.+++|.+..+ .
T Consensus 204 l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~ 282 (434)
T PRK07233 204 LAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMV 282 (434)
T ss_pred HHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEE
Confidence 9999988899999999999999888887655556668999999999999999999874 5566667788888887765 3
Q ss_pred EecCCCCCC-------CCCCcccc----cccccC--CCCCeE--EEEeccccc---cCCCCCCCCCeEE---EcCCCCCC
Q 036521 219 LHRDKNFMP-------RNPAAWSA----WNFLGG--LDGKAC--LTYWLNVLQ---NIGDGETGLPFLV---TLNPDHTP 277 (602)
Q Consensus 219 l~~d~~l~p-------~~~~~w~s----~n~~~~--~~~~~~--~t~~~~~~~---~l~~~~~~~~v~~---tl~p~~~p 277 (602)
+..+..+.+ .....+.. .++... +++..+ +.++..... .+++++..+.+.+ .+.|...+
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~ 362 (434)
T PRK07233 283 LKLRRPLTDYYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDR 362 (434)
T ss_pred EEecCCCCCCceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCCh
Confidence 455544321 10000000 011111 122222 222322111 1111101011111 12232211
Q ss_pred c----ceEEEEEccCCCCChhHHHHHHHHHhh-cCCCCeEEeccccC---CCCChhHHHHHHHHHHHhcC
Q 036521 278 N----NTLLKWSTGHPVPSVAASKASLELDHI-QGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHGVLG 339 (602)
Q Consensus 278 ~----~~l~r~~~~~p~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~ll~ 339 (602)
. ..+.+|.++.|.+.+++.. .+..+ +..+|+++||+++. .+.+|+|+.||+.||++|+.
T Consensus 363 ~~~~~~~~~r~~~a~~~~~~g~~~---~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~ 429 (434)
T PRK07233 363 DDVRAVRISRAPYAQPIYEPGYLD---KIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILE 429 (434)
T ss_pred hheeeEEEEEeccccccccCchhh---cCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhh
Confidence 1 1356788888888766322 22222 34689999999642 23599999999999999965
No 18
>PRK07208 hypothetical protein; Provisional
Probab=99.71 E-value=1.5e-15 Score=166.95 Aligned_cols=274 Identities=14% Similarity=0.178 Sum_probs=174.7
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHH-------------HHHhc-C------ccccCC
Q 036521 63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILS-------------FYRNH-H------LLQLFG 122 (602)
Q Consensus 63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~-------------~~~~~-g------~~~~~~ 122 (602)
+++|+++|+++ .+++++.+.++.|++.++|+++++++ ++.+++. .+... + ......
T Consensus 131 ~~~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (479)
T PRK07208 131 EEDSFEDWVIN-RFGRRLYSTFFKGYTEKVWGVPCDEI---SADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL 206 (479)
T ss_pred CCCCHHHHHHH-hhCHHHHHHHHHHhhhhhhCCChHHC---CChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence 67999999998 58999999999999999999999876 2222221 11110 0 000000
Q ss_pred CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE--EEe--CCCc--EEecCEEEEecChHHHHhhcc
Q 036521 123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT--EVR--GDGF--QGFYDGCIMAVHAPDALRILG 196 (602)
Q Consensus 123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~--v~~--~~g~--~~~ad~VI~A~p~~~a~~ll~ 196 (602)
...+..++||+++++++|++.+.+.|++|+++++|++|.++++++. ++. .+|+ .+.||+||+|+|+..+.+++.
T Consensus 207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~ 286 (479)
T PRK07208 207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALD 286 (479)
T ss_pred eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcC
Confidence 1245567899999999999999888999999999999999877742 222 2353 578999999999999999887
Q ss_pred CCCCHHHHhhccCcccccee-EEEecCCCC-CCCC-------CCc------ccccccccCCCCC-eEE--EEec-c--cc
Q 036521 197 NQSTFEEKRLLGAFQYVYSD-IFLHRDKNF-MPRN-------PAA------WSAWNFLGGLDGK-ACL--TYWL-N--VL 255 (602)
Q Consensus 197 ~~~~~~~~~~l~~~~y~~~~-~vl~~d~~l-~p~~-------~~~------w~s~n~~~~~~~~-~~~--t~~~-~--~~ 255 (602)
+++.+...+.+..++|.+.. +.++++... .|.. ... ...+.....|++. ..+ .+.. . ..
T Consensus 287 ~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~ 366 (479)
T PRK07208 287 PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDL 366 (479)
T ss_pred CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCcc
Confidence 54566777778889988754 334555431 1111 000 0001101112222 212 1211 1 11
Q ss_pred ccCCCCCCCCCeEE---EcCCCCCCcc---eEEEEEccCCCCChhHHHHHHHHHh-hcCCCCeEEecccc--CCCCChhH
Q 036521 256 QNIGDGETGLPFLV---TLNPDHTPNN---TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCEAYQ--GYGFHEDG 326 (602)
Q Consensus 256 ~~l~~~~~~~~v~~---tl~p~~~p~~---~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~~--g~g~~E~a 326 (602)
..+++++..+.+.. .+++...... .+.+|.++.|+|+..+.+....+.. ++..+|+++||.+. .+-.+|+|
T Consensus 367 ~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a 446 (479)
T PRK07208 367 WNMSDEDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHS 446 (479)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHH
Confidence 12222111011111 1222111111 3678999999999999888877764 46678999999764 34458999
Q ss_pred HHHHHHHHHHhcCC
Q 036521 327 LKAGMIAAHGVLGK 340 (602)
Q Consensus 327 v~SG~~aA~~ll~~ 340 (602)
+.||+++|+.|+..
T Consensus 447 ~~sg~~~a~~i~~~ 460 (479)
T PRK07208 447 MLTAMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998664
No 19
>PLN02529 lysine-specific histone demethylase 1
Probab=99.62 E-value=3.2e-14 Score=160.08 Aligned_cols=154 Identities=11% Similarity=-0.007 Sum_probs=108.6
Q ss_pred CCCCCHHHHHHhcC------CCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh
Q 036521 62 DRDETLGQFIKSRG------YSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS 135 (602)
Q Consensus 62 ~~~~s~~~~l~~~~------~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~ 135 (602)
.+++|+++|+++.. +++.. ..++...+..+..+.+.++..+++... ....+ ...+++...+.||+++
T Consensus 286 ~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~---~~~~~---~e~~G~~~~i~GG~~~ 358 (738)
T PLN02529 286 ANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYW---DQDDP---YEMGGDHCFLAGGNWR 358 (738)
T ss_pred ccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHh---hhccc---cccCCceEEECCcHHH
Confidence 46899999998653 34443 234444554455555555554454333 22211 1234567889999999
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh--hc-cCCCCHHHHhhccCccc
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR--IL-GNQSTFEEKRLLGAFQY 212 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~--ll-~~~~~~~~~~~l~~~~y 212 (602)
++++|++.+ +|+++++|++|..++++|+|++. ++++.||+||+|+|+..+.+ +. .+++++...+.+.++.|
T Consensus 359 Li~aLA~~L-----~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~y 432 (738)
T PLN02529 359 LINALCEGV-----PIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGF 432 (738)
T ss_pred HHHHHHhcC-----CEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCC
Confidence 999999877 69999999999999999998764 44789999999999999874 32 33355566788999999
Q ss_pred ccee-EEEecCCCCCCC
Q 036521 213 VYSD-IFLHRDKNFMPR 228 (602)
Q Consensus 213 ~~~~-~vl~~d~~l~p~ 228 (602)
.++. ++++++..+++.
T Consensus 433 G~v~KV~L~F~~~FW~~ 449 (738)
T PLN02529 433 GLLNKVAMVFPSVFWGE 449 (738)
T ss_pred ceeEEEEEEeCCccccC
Confidence 7764 667788776643
No 20
>PLN02268 probable polyamine oxidase
Probab=99.62 E-value=2.1e-14 Score=155.92 Aligned_cols=257 Identities=18% Similarity=0.172 Sum_probs=154.7
Q ss_pred CCCCCHHHHHHhc----------CCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecC
Q 036521 62 DRDETLGQFIKSR----------GYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRS 131 (602)
Q Consensus 62 ~~~~s~~~~l~~~----------~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~g 131 (602)
.+++|+++|+++. ++++++.+.++.| +.++|+++++++ ++..+.. ..++ . +. ...+.+
T Consensus 131 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l---s~~~~~~----~~~~--~-g~-~~~~~~ 198 (435)
T PLN02268 131 EEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTI---SLKSWDQ----EELL--E-GG-HGLMVR 198 (435)
T ss_pred CCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhC---chhhcCC----cccc--C-CC-ceeecC
Confidence 4689999986442 1567777777788 456788887765 3322110 0011 1 11 235788
Q ss_pred CcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhh-c--cCCCCHHHHhhcc
Q 036521 132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRI-L--GNQSTFEEKRLLG 208 (602)
Q Consensus 132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~l-l--~~~~~~~~~~~l~ 208 (602)
|+++++++|++.+ +|+++++|++|.+++++|.|++.+|+++.||+||+|+|+..+.+. + .+++++...+.+.
T Consensus 199 G~~~l~~~l~~~~-----~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~ 273 (435)
T PLN02268 199 GYDPVINTLAKGL-----DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAIS 273 (435)
T ss_pred CHHHHHHHHhccC-----ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHH
Confidence 9999999998765 799999999999999999999888878999999999999998653 2 2224556677788
Q ss_pred Ccccccee-EEEecCCCCCCCCCC-------ccccccccc--CCCCCeEEEEeccc-----cccCCCCCCCCCeEE---E
Q 036521 209 AFQYVYSD-IFLHRDKNFMPRNPA-------AWSAWNFLG--GLDGKACLTYWLNV-----LQNIGDGETGLPFLV---T 270 (602)
Q Consensus 209 ~~~y~~~~-~vl~~d~~l~p~~~~-------~w~s~n~~~--~~~~~~~~t~~~~~-----~~~l~~~~~~~~v~~---t 270 (602)
+++|.++. ++++++..+++.... .+....+.. ...+...++++... +..+++++..+.+.. .
T Consensus 274 ~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~ 353 (435)
T PLN02268 274 DLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKK 353 (435)
T ss_pred hCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88887654 677888777654211 011111111 11223334443321 222222111011111 1
Q ss_pred cCCC-CCCcc-eEEEEE--------ccCCCCChhH-HHHHHHHHhhcCCCCeEEeccccC---CCCChhHHHHHHHHHHH
Q 036521 271 LNPD-HTPNN-TLLKWS--------TGHPVPSVAA-SKASLELDHIQGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHG 336 (602)
Q Consensus 271 l~p~-~~p~~-~l~r~~--------~~~p~~~~~~-~~~~~~l~~lqg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~ 336 (602)
+.+. ..|.. .+++|. |+.+ .++. ......+. +...+++|||+++. .|++|+|+.||++||++
T Consensus 354 ~~~~~~~p~~~~~~~W~~dp~~~G~~~~~--~~g~~~~~~~~l~--~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~ 429 (435)
T PLN02268 354 MLPDATEPVQYLVSRWGSDPNSLGCYSYD--LVGKPHDLYERLR--APVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEE 429 (435)
T ss_pred HcCCCCCccEEEecccCCCCCCCccCCCC--CCCCCHHHHHHHh--CCCCCeEEeeccCCCcccccHHHHHHHHHHHHHH
Confidence 1121 12322 466775 2221 1221 11111111 34568999999973 57899999999999999
Q ss_pred hcC
Q 036521 337 VLG 339 (602)
Q Consensus 337 ll~ 339 (602)
|+.
T Consensus 430 v~~ 432 (435)
T PLN02268 430 CRM 432 (435)
T ss_pred HHH
Confidence 864
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=7e-15 Score=153.52 Aligned_cols=110 Identities=26% Similarity=0.351 Sum_probs=98.8
Q ss_pred CchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCC--CccHHHHHHHHHHHHHHHccC-----CCCCeEEEEecCc
Q 036521 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDE--DEDLKVAQMRKHSLQIEKARV-----SKGHGVLEIGCGW 561 (602)
Q Consensus 489 ~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l~l-----~~g~~vLDiGcG~ 561 (602)
.+....+++|..|||..+++|+.++++.|+ ++||+.+ ..++.+||.++++.+++.+++ +++++|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 445678889999999999999999998764 6888764 678999999999999999988 7889999999999
Q ss_pred hHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 562 GTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 562 G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
|.++..++++++++|+|||+|++|++.|+++++..|+.+
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~ 168 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSD 168 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 999999999778999999999999999999999888753
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.46 E-value=7.5e-12 Score=141.66 Aligned_cols=208 Identities=15% Similarity=0.123 Sum_probs=127.3
Q ss_pred CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh--h-ccCCCC
Q 036521 124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR--I-LGNQST 200 (602)
Q Consensus 124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~--l-l~~~~~ 200 (602)
+..+.+.||+++|+++|++.| +|+++++|++|...+++|.|. .+|+++.||+||+|+|+..+.+ + +.++++
T Consensus 427 G~~~~v~GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dgV~V~-~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP 500 (808)
T PLN02328 427 GDHCFIPGGNDTFVRELAKDL-----PIFYERTVESIRYGVDGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELP 500 (808)
T ss_pred CeEEEECCcHHHHHHHHHhhC-----CcccCCeeEEEEEcCCeEEEE-eCCeEEEcCEEEECCCHHHHhhcccccCCCCC
Confidence 457889999999999999998 599999999999999999874 4576899999999999999874 3 222356
Q ss_pred HHHHhhccCcccccee-EEEecCCCCCCCCCC-------------cc-cccccccCCCCCeEEEEeccc-----cccCCC
Q 036521 201 FEEKRLLGAFQYVYSD-IFLHRDKNFMPRNPA-------------AW-SAWNFLGGLDGKACLTYWLNV-----LQNIGD 260 (602)
Q Consensus 201 ~~~~~~l~~~~y~~~~-~vl~~d~~l~p~~~~-------------~w-~s~n~~~~~~~~~~~t~~~~~-----~~~l~~ 260 (602)
+...+.+.++.|..+. +++.++..+++.... .| ..+++... .+...+..++.. ...+++
T Consensus 501 ~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~-~G~~vLvafv~G~~A~~~e~lsd 579 (808)
T PLN02328 501 QRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSV-SGGPLLIALVAGDAAVKFETLSP 579 (808)
T ss_pred HHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCC-CCCcEEEEEecChhhHHHhcCCH
Confidence 6777889999997764 566777766543211 00 00111111 122333333321 112222
Q ss_pred CCCCCCeEEE----cCCC----CCCcc-eEEEEE--------ccCCCCChhHH-HHHHHHHhhcCCCCeEEeccccC---
Q 036521 261 GETGLPFLVT----LNPD----HTPNN-TLLKWS--------TGHPVPSVAAS-KASLELDHIQGKRGIWFCEAYQG--- 319 (602)
Q Consensus 261 ~~~~~~v~~t----l~p~----~~p~~-~l~r~~--------~~~p~~~~~~~-~~~~~l~~lqg~~gl~~aG~~~g--- 319 (602)
++..+.+... +.+. ..|.. .+++|. |+.+. ++.. .....+.+--+.++|+|||+++.
T Consensus 580 eE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~--pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~ 657 (808)
T PLN02328 580 VESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVA--VGSSGDDYDILAESVGDGRVFFAGEATNKQY 657 (808)
T ss_pred HHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCC--CCCchhHHHHHhccCCCCCEEEEEhhHhCCC
Confidence 1111111111 2221 12222 467886 33322 2211 11111111002468999999973
Q ss_pred CCCChhHHHHHHHHHHHhcCC
Q 036521 320 YGFHEDGLKAGMIAAHGVLGK 340 (602)
Q Consensus 320 ~g~~E~av~SG~~aA~~ll~~ 340 (602)
.|++|+|+.||+++|++|+..
T Consensus 658 ~GtVhGAi~SGlRAA~eIl~~ 678 (808)
T PLN02328 658 PATMHGAFLSGMREAANILRV 678 (808)
T ss_pred CeEhHHHHHHHHHHHHHHHHH
Confidence 568999999999999999764
No 23
>PLN03000 amine oxidase
Probab=99.46 E-value=4.7e-12 Score=143.25 Aligned_cols=211 Identities=11% Similarity=0.067 Sum_probs=127.7
Q ss_pred CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHH--hhcc-CCCC
Q 036521 124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDAL--RILG-NQST 200 (602)
Q Consensus 124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~--~ll~-~~~~ 200 (602)
++.+.+.||+++|+++|++.| +|+++++|++|.+++++|.|++.++ ++.||+||+|+|+..+. .+.. +++.
T Consensus 371 G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP 444 (881)
T PLN03000 371 GDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELP 444 (881)
T ss_pred CceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCC
Confidence 456789999999999999998 5999999999999999999987644 79999999999999988 3333 2355
Q ss_pred HHHHhhccCccccce-eEEEecCCCCCCCCCC-------------cccc-cccccCCCCCeEEEEec-cc----cccCCC
Q 036521 201 FEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA-------------AWSA-WNFLGGLDGKACLTYWL-NV----LQNIGD 260 (602)
Q Consensus 201 ~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~-------------~w~s-~n~~~~~~~~~~~t~~~-~~----~~~l~~ 260 (602)
+...+.+.++.|... .+++.++..+++.... .|.. +++. +..+...+..++ +. +..+++
T Consensus 445 ~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSd 523 (881)
T PLN03000 445 QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYA-PVAGGPLLIALVAGEAAHKFETMPP 523 (881)
T ss_pred HHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCC-CCCCCcEEEEEecCchhHHhhcCCH
Confidence 667788999999765 4677777776643311 1111 1111 112223333333 21 222332
Q ss_pred CCCCCCeEEE----cCCC--C--CCcc-eEEEEEc---cC---CCCChhHHH-HHHHHHhhcCCCCeEEeccccC---CC
Q 036521 261 GETGLPFLVT----LNPD--H--TPNN-TLLKWST---GH---PVPSVAASK-ASLELDHIQGKRGIWFCEAYQG---YG 321 (602)
Q Consensus 261 ~~~~~~v~~t----l~p~--~--~p~~-~l~r~~~---~~---p~~~~~~~~-~~~~l~~lqg~~gl~~aG~~~g---~g 321 (602)
++..+.+... +.+. . .|.. .+++|.. +. ..+.++... ....+.+--+.++++|||..+. .|
T Consensus 524 eE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~G 603 (881)
T PLN03000 524 TDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPA 603 (881)
T ss_pred HHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCe
Confidence 1111111111 2221 1 1222 3567731 11 111122111 1112211002458999999873 57
Q ss_pred CChhHHHHHHHHHHHhcCCc
Q 036521 322 FHEDGLKAGMIAAHGVLGKR 341 (602)
Q Consensus 322 ~~E~av~SG~~aA~~ll~~~ 341 (602)
++|+|+.||+++|++|+...
T Consensus 604 TVhGAieSGlRAA~eIl~~l 623 (881)
T PLN03000 604 TMHGAFVTGLREAANMAQSA 623 (881)
T ss_pred eHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999997643
No 24
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.45 E-value=2e-14 Score=154.61 Aligned_cols=272 Identities=19% Similarity=0.184 Sum_probs=147.9
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHHH
Q 036521 64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIAL 143 (602)
Q Consensus 64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~ 143 (602)
..++.+|+....+.+.+...++.++........+...........+..+...........+.+....|++..+...+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 221 (450)
T PF01593_consen 142 LESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEE 221 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhh
Confidence 45777777666666665554555566555544333321112111111111100000122344556677777777777766
Q ss_pred HhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh-hccCCCCHHHHhhccCccccce-eEEEec
Q 036521 144 LESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR-ILGNQSTFEEKRLLGAFQYVYS-DIFLHR 221 (602)
Q Consensus 144 l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~-ll~~~~~~~~~~~l~~~~y~~~-~~vl~~ 221 (602)
+ |.+|+++++|++|+.++++|.|++.+|+++.||+||+|+|+..+.+ .+.+++.....+.+..++|.+. .+++.+
T Consensus 222 ~---g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~ 298 (450)
T PF01593_consen 222 L---GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGF 298 (450)
T ss_dssp H---GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred c---CceeecCCcceeccccccccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEee
Confidence 6 7799999999999999999999999998899999999999999996 3332244446777889999875 455677
Q ss_pred CCCCCCCCC----------Cccccccccc--CC---CCCeEEEEeccc----cccCCCCCCCCCeEE---EcCCC-CCCc
Q 036521 222 DKNFMPRNP----------AAWSAWNFLG--GL---DGKACLTYWLNV----LQNIGDGETGLPFLV---TLNPD-HTPN 278 (602)
Q Consensus 222 d~~l~p~~~----------~~w~s~n~~~--~~---~~~~~~t~~~~~----~~~l~~~~~~~~v~~---tl~p~-~~p~ 278 (602)
+....+... ..+..+.+.. .+ ++.....+.... ...++.++..+.+.. .+.+. ..++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~ 378 (450)
T PF01593_consen 299 DRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPD 378 (450)
T ss_dssp SSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGE
T ss_pred ecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccc
Confidence 777655431 0111111111 11 122233333221 222222111011111 11221 1122
Q ss_pred c---eEEEEEc-cCCCCChhH---HHHHHHHHhh-cCC-CCeEEeccccCC---CCChhHHHHHHHHHHHhc
Q 036521 279 N---TLLKWST-GHPVPSVAA---SKASLELDHI-QGK-RGIWFCEAYQGY---GFHEDGLKAGMIAAHGVL 338 (602)
Q Consensus 279 ~---~l~r~~~-~~p~~~~~~---~~~~~~l~~l-qg~-~gl~~aG~~~g~---g~~E~av~SG~~aA~~ll 338 (602)
+ .+.+|.. ..+..+... ......+..+ +.. ++|+|||+|+.. |.+|+|+.||.+||++||
T Consensus 379 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 379 PIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp ESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 2 3456643 223321111 1111223333 333 799999999853 479999999999999985
No 25
>PLN02568 polyamine oxidase
Probab=99.40 E-value=4.1e-12 Score=140.18 Aligned_cols=160 Identities=13% Similarity=0.049 Sum_probs=116.9
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHH-HHHHHHHhcC-c-----ccc--C-----CCCcEEEe
Q 036521 64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAF-SILSFYRNHH-L-----LQL--F-----GRPQWLTV 129 (602)
Q Consensus 64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~-~~l~~~~~~g-~-----~~~--~-----~~~~~~~~ 129 (602)
+.|+++|++++ +++ +.+.+..|+..++++..+.......+. .+..+...++ + +.. . ..+..+.+
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 45999999984 555 667778899999998887755332222 2333332222 1 111 0 12346789
Q ss_pred cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh-------hccCCCCHH
Q 036521 130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR-------ILGNQSTFE 202 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~-------ll~~~~~~~ 202 (602)
.||+++|+++|++.|+ +.+|+++++|++|.+++++|.|++.+|+++.||+||+|+|+..+.+ .+.+++++.
T Consensus 238 ~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~ 315 (539)
T PLN02568 238 AKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDF 315 (539)
T ss_pred CCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHH
Confidence 9999999999999995 5679999999999999999999998888899999999999999885 244335555
Q ss_pred HHhhccCccccce-eEEEecCCCCCC
Q 036521 203 EKRLLGAFQYVYS-DIFLHRDKNFMP 227 (602)
Q Consensus 203 ~~~~l~~~~y~~~-~~vl~~d~~l~p 227 (602)
..+.+..+.|... .+++.++..+++
T Consensus 316 k~~Ai~~l~~g~~~Ki~l~f~~~fW~ 341 (539)
T PLN02568 316 KTDAISRLGFGVVNKLFVELSPRPDG 341 (539)
T ss_pred HHHHHHhcCCceeeEEEEEecCCCCC
Confidence 6778889888654 467778777654
No 26
>PLN02976 amine oxidase
Probab=99.38 E-value=1.1e-11 Score=143.85 Aligned_cols=208 Identities=11% Similarity=0.073 Sum_probs=125.5
Q ss_pred cEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEec----------CCeEEEEeCCCcEEecCEEEEecChHHHH--
Q 036521 125 QWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQY----------DEGRTEVRGDGFQGFYDGCIMAVHAPDAL-- 192 (602)
Q Consensus 125 ~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~----------~~gv~v~~~~g~~~~ad~VI~A~p~~~a~-- 192 (602)
..+.+.||+++|+++|++.| .|+|+++|++|... +++|.|++.+|+++.||+||+|+|+..+.
T Consensus 927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 56779999999999999988 59999999999884 46799999899889999999999999876
Q ss_pred hhccCC-CCHHHHhhccCccccce-eEEEecCCCCCCCCCC----c----------ccccccccCCCCCeEEEEeccc--
Q 036521 193 RILGNQ-STFEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA----A----------WSAWNFLGGLDGKACLTYWLNV-- 254 (602)
Q Consensus 193 ~ll~~~-~~~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~----~----------w~s~n~~~~~~~~~~~t~~~~~-- 254 (602)
.+...| +++.....+..+.|... -+++.++..+++.... . |..|+...+....+.+.+..+.
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aA 1081 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAA 1081 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhH
Confidence 344333 44445566788888654 5778888777664211 1 2223332222223444444332
Q ss_pred --cccCCCCCCCCCeE----EEcCCCCCCcc---eEEEEE---ccCCCC---ChhHHH-HHHHHHhhcC-CCCeEEeccc
Q 036521 255 --LQNIGDGETGLPFL----VTLNPDHTPNN---TLLKWS---TGHPVP---SVAASK-ASLELDHIQG-KRGIWFCEAY 317 (602)
Q Consensus 255 --~~~l~~~~~~~~v~----~tl~p~~~p~~---~l~r~~---~~~p~~---~~~~~~-~~~~l~~lqg-~~gl~~aG~~ 317 (602)
...++.++....++ ..++....|.+ .+.+|. |+.=-| .++... ....+. ++ .++|||||..
T Consensus 1082 reiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LA--ePVggRLFFAGEA 1159 (1713)
T PLN02976 1082 IDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILG--RPVENCLFFAGEA 1159 (1713)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHh--CCCCCcEEEEehh
Confidence 11222211101111 11121111222 356773 211111 122111 111111 22 2459999997
Q ss_pred c---CCCCChhHHHHHHHHHHHhcC
Q 036521 318 Q---GYGFHEDGLKAGMIAAHGVLG 339 (602)
Q Consensus 318 ~---g~g~~E~av~SG~~aA~~ll~ 339 (602)
+ ..|++++|+.||.++|++|+.
T Consensus 1160 TS~~~pGTVHGAIeSG~RAA~eIL~ 1184 (1713)
T PLN02976 1160 TCKEHPDTVGGAMMSGLREAVRIID 1184 (1713)
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHH
Confidence 6 468899999999999999964
No 27
>PLN02676 polyamine oxidase
Probab=99.36 E-value=1.9e-11 Score=133.86 Aligned_cols=209 Identities=17% Similarity=0.159 Sum_probs=125.8
Q ss_pred cCCcHhHHHHHHHHHhcC------CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh--hccCC-CC
Q 036521 130 RSRSHSYVNKVIALLESL------GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR--ILGNQ-ST 200 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~------g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~--ll~~~-~~ 200 (602)
++|+++++++|++.+.+. +++|+++++|++|..++++|.|++.+|+++.||+||+|+|+....+ +...| ++
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP 299 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP 299 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence 689999999999987432 2579999999999999999999999998899999999999998875 44433 44
Q ss_pred HHHHhhccCccccce-eEEEecCCCCCCCCCC------------cccccccc-c-CCCCCeEEEEeccc----cccCCCC
Q 036521 201 FEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA------------AWSAWNFL-G-GLDGKACLTYWLNV----LQNIGDG 261 (602)
Q Consensus 201 ~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~------------~w~s~n~~-~-~~~~~~~~t~~~~~----~~~l~~~ 261 (602)
+...+.+.+++|... -+++.++..+++.... .++.|... . .+.....+.+..+. +..++++
T Consensus 300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e 379 (487)
T PLN02676 300 DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDS 379 (487)
T ss_pred HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHH
Confidence 445677888888654 5777888877765210 01112111 1 12222333322221 1122221
Q ss_pred CCCCCeEE----EcCCCC-CCcc-eEEEEEc---cCC---CCChhHHHHHHHHHhh-cCCCCeEEeccccC---CCCChh
Q 036521 262 ETGLPFLV----TLNPDH-TPNN-TLLKWST---GHP---VPSVAASKASLELDHI-QGKRGIWFCEAYQG---YGFHED 325 (602)
Q Consensus 262 ~~~~~v~~----tl~p~~-~p~~-~l~r~~~---~~p---~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g---~g~~E~ 325 (602)
+..+.+.. .+++.. .|.. ..+.|.. +.= .+.++.... ....+ +..++|+|||..+. .|++|+
T Consensus 380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~--~~~~L~~P~gri~FAGe~ts~~~~g~~eG 457 (487)
T PLN02676 380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRY--EFDQIRAPVGRVYFTGEHTSEKYNGYVHG 457 (487)
T ss_pred HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChh--HHHHHhCCCCceEEeccccccccccchHH
Confidence 11111111 112111 1222 2446631 111 111221111 11222 35679999999873 688999
Q ss_pred HHHHHHHHHHHhcCC
Q 036521 326 GLKAGMIAAHGVLGK 340 (602)
Q Consensus 326 av~SG~~aA~~ll~~ 340 (602)
|+.||.++|++|+..
T Consensus 458 A~~SG~RaA~~I~~~ 472 (487)
T PLN02676 458 AYLAGIDTANDLLEC 472 (487)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999653
No 28
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.35 E-value=3.2e-12 Score=132.68 Aligned_cols=100 Identities=18% Similarity=0.029 Sum_probs=83.7
Q ss_pred CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCC-CCHH
Q 036521 124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQ-STFE 202 (602)
Q Consensus 124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~-~~~~ 202 (602)
++.+...|||+++++++++.| +..|+++.+|.+|.++++||+|++.+.++..+|.||+|+|+..+..|-..| ++++
T Consensus 199 ~~~~~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~ 275 (450)
T COG1231 199 TQMLQRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAE 275 (450)
T ss_pred chhhccCccHHHHHHHHHHHh---hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHH
Confidence 344444499999999999999 889999999999999999999999884479999999999999999998755 5677
Q ss_pred HHhhccCccccce-eEEEecCCCCC
Q 036521 203 EKRLLGAFQYVYS-DIFLHRDKNFM 226 (602)
Q Consensus 203 ~~~~l~~~~y~~~-~~vl~~d~~l~ 226 (602)
.++....++|.++ -..+.++..++
T Consensus 276 ~~~a~~~~~y~~~~K~~v~f~rpFW 300 (450)
T COG1231 276 YKQAAKGVPYGSATKIGVAFSRPFW 300 (450)
T ss_pred HHHHhcCcCcchheeeeeecCchhh
Confidence 7888888999775 45666666554
No 29
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=1.6e-11 Score=119.69 Aligned_cols=89 Identities=24% Similarity=0.434 Sum_probs=74.6
Q ss_pred chHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHH
Q 036521 490 SLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVV 569 (602)
Q Consensus 490 ~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la 569 (602)
......++|+..||+.|++.+...+.. |+ +.+++.+++++|++|||||||+|.+++.++
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~-------------------Wr--~~~i~~~~~~~g~~vLDva~GTGd~a~~~~ 70 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHRL-------------------WR--RALISLLGIKPGDKVLDVACGTGDMALLLA 70 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchHH-------------------HH--HHHHHhhCCCCCCEEEEecCCccHHHHHHH
Confidence 456778889999999998877665443 33 367788888899999999999999999999
Q ss_pred hcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 570 RQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 570 ~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+.. .++|+|+|+|+.||+.|++++.+.|..
T Consensus 71 k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~ 101 (238)
T COG2226 71 KSVGTGEVVGLDISESMLEVAREKLKKKGVQ 101 (238)
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhhccCcc
Confidence 983 479999999999999999999987654
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.13 E-value=6.6e-11 Score=116.53 Aligned_cols=88 Identities=27% Similarity=0.442 Sum_probs=44.6
Q ss_pred hHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHh
Q 036521 491 LAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR 570 (602)
Q Consensus 491 ~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~ 570 (602)
.+...+.|+..||..|++.+...+.. +++ .+++.+.+++|.+|||+|||+|.++..+++
T Consensus 9 v~~~Fd~ia~~YD~~n~~ls~g~~~~-------------------wr~--~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~ 67 (233)
T PF01209_consen 9 VRKMFDRIAPRYDRMNDLLSFGQDRR-------------------WRR--KLIKLLGLRPGDRVLDVACGTGDVTRELAR 67 (233)
T ss_dssp -----------------------------------------------S--HHHHHHT--S--EEEEET-TTSHHHHHHGG
T ss_pred HHHHHHHHHHHhCCCccccCCcHHHH-------------------HHH--HHHhccCCCCCCEEEEeCCChHHHHHHHHH
Confidence 45567788889999988877766554 222 566677888999999999999999999998
Q ss_pred cc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 571 QT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 571 ~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+. +++|+|+|+|++|++.|+++++..+..
T Consensus 68 ~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~ 98 (233)
T PF01209_consen 68 RVGPNGKVVGVDISPGMLEVARKKLKREGLQ 98 (233)
T ss_dssp GSS---EEEEEES-HHHHHHHHHHHHHTT--
T ss_pred HCCCccEEEEecCCHHHHHHHHHHHHhhCCC
Confidence 73 479999999999999999999987653
No 31
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.97 E-value=1.7e-09 Score=107.08 Aligned_cols=60 Identities=23% Similarity=0.464 Sum_probs=53.0
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+.++..+.+++|++|||||||+|.++..+++. .+++|+|+|+|++|++.|+++++..++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~ 96 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH 96 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 46778889999999999999999999999986 3579999999999999999998876653
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.96 E-value=1.5e-09 Score=94.41 Aligned_cols=51 Identities=35% Similarity=0.651 Sum_probs=46.5
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
||.+|||||||+|.+++.++++ .+++|+|||+|++|++.|++++.+.+..+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 52 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSD 52 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 6789999999999999999994 79999999999999999999997776654
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.89 E-value=3.8e-09 Score=106.32 Aligned_cols=54 Identities=26% Similarity=0.465 Sum_probs=46.9
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHH
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~ 594 (602)
.+++.++++++++|||+|||+|.++..++++.+ ++|+|+|+|++|++.|+++..
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~ 119 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQE 119 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence 345667888999999999999999999998643 699999999999999998764
No 34
>PRK05785 hypothetical protein; Provisional
Probab=98.85 E-value=4.7e-09 Score=103.29 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=39.3
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
++.+|||||||+|.++..++++.+.+|+|+|+|++|++.|+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc
Confidence 4679999999999999999986568999999999999999876
No 35
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.80 E-value=1.5e-08 Score=100.15 Aligned_cols=104 Identities=16% Similarity=0.319 Sum_probs=68.1
Q ss_pred CchHHHHHhhHhhhccch-HHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHc---cCCCCCeEEEEecCchHH
Q 036521 489 NSLAQARRNISYHYDLSN-ELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKA---RVSKGHGVLEIGCGWGTF 564 (602)
Q Consensus 489 ~~~~~~~~~i~~~Yd~~~-~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l---~l~~g~~vLDiGcG~G~~ 564 (602)
+.....+..|..+||... +.++...+. +........+........+.+++.+ +..++.+|||||||+|.+
T Consensus 4 ~~~~~~~~~v~~~~~~~~~~~w~~~y~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~ 77 (230)
T PRK07580 4 FNYLEHKSEVRTYFNRTGFDRWARIYSD------APVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSL 77 (230)
T ss_pred hhhhhchhhhhHHHhhhccchHHHhhCc------CchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHH
Confidence 344566778888888532 333332222 2221111122122233333444444 346788999999999999
Q ss_pred HHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 565 AIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 565 ~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+..++++ +++|+|+|+|++|++.|+++....++.
T Consensus 78 ~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~ 111 (230)
T PRK07580 78 SIPLARR-GAKVVASDISPQMVEEARERAPEAGLA 111 (230)
T ss_pred HHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence 9999985 789999999999999999999887763
No 36
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.79 E-value=1.8e-08 Score=96.69 Aligned_cols=89 Identities=18% Similarity=0.353 Sum_probs=75.1
Q ss_pred HHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc
Q 036521 492 AQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ 571 (602)
Q Consensus 492 ~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~ 571 (602)
...+++|+..||..||..++....- | .+....+++..+|++|||++||+|.++..+.++
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGiHRl-------W--------------Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~ 121 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGIHRL-------W--------------KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRH 121 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHH-------H--------------HHHhhhccCCCCCCeEEEecCCcchhHHHHHHh
Confidence 5567889999999999988765332 2 346788999999999999999999999999887
Q ss_pred -cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 572 -TG------CNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 572 -~g------~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.. .+|+++|||++||+.+++|+++.++.+.
T Consensus 122 v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~ 158 (296)
T KOG1540|consen 122 VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS 158 (296)
T ss_pred hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC
Confidence 33 6899999999999999999988887654
No 37
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.79 E-value=2.8e-08 Score=102.08 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=63.5
Q ss_pred HHHHHhhHhhhccch-HHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccC---CCCCeEEEEecCchHHHHH
Q 036521 492 AQARRNISYHYDLSN-ELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV---SKGHGVLEIGCGWGTFAIE 567 (602)
Q Consensus 492 ~~~~~~i~~~Yd~~~-~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l---~~g~~vLDiGcG~G~~~~~ 567 (602)
...++.|+++||... +-+...++.........+.. .... ...++.+++.+.. .++.+|||||||+|.+++.
T Consensus 87 ~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~-~~~~----~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~ 161 (315)
T PLN02585 87 GDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDI-RLGH----AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIP 161 (315)
T ss_pred HHHHHHHHHHhcccchhhHHHhcCCccccCceeeec-ccCh----HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHH
Confidence 456678888888752 22333333322221111111 0011 1122333444332 3578999999999999999
Q ss_pred HHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 568 VVRQTGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 568 la~~~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
++++ |++|+|+|+|++|++.|+++++..
T Consensus 162 la~~-g~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 162 LALE-GAIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred HHHC-CCEEEEEECCHHHHHHHHHHHHhc
Confidence 9996 899999999999999999998765
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.78 E-value=2.9e-08 Score=87.61 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=54.9
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.....+++.+.+.++++|||+|||+|.++..++++ .+++|+|+|+|+.+++.++++++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 69 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS 69 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34456788888888999999999999999999987 4589999999999999999999887664
No 39
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.78 E-value=8.7e-09 Score=98.92 Aligned_cols=50 Identities=32% Similarity=0.591 Sum_probs=47.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
-+|.+|||||||.|.++..+|+. |++|||+|+|+++++.|+.++.+.|+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhcccc
Confidence 37889999999999999999996 999999999999999999999999886
No 40
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.77 E-value=1.3e-07 Score=104.32 Aligned_cols=144 Identities=13% Similarity=0.106 Sum_probs=95.5
Q ss_pred CCCHHHHHHhcC-CCHHHHHHHHHHHHhhhcC-CChhhHHhhhHHHH---HHHHHhcCccccCCCCcEEEecCCcHhHHH
Q 036521 64 DETLGQFIKSRG-YSELFQKAYLVPICGSIWS-CPSEGIMSFSAFSI---LSFYRNHHLLQLFGRPQWLTVRSRSHSYVN 138 (602)
Q Consensus 64 ~~s~~~~l~~~~-~~~~~~~~~~~pl~~~v~~-~~~~~~~~~p~~~~---l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~ 138 (602)
..|+.+|+++++ +.....+.++...+ ..++ .++.+. ++.+. +.+.. ...+ .+.++||+++|++
T Consensus 169 ~~s~~~~l~~~~~~~~~~lr~~l~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~G-~~~~~GG~~~l~~ 236 (492)
T TIGR02733 169 LLTVADLLRLCGLGDDRRLRRFLDLQL-KLYSQEDADET---AALYGATVLQMAQ-------APHG-LWHLHGSMQTLSD 236 (492)
T ss_pred hhhHHHHHHHhCCCccHHHHHHHHHHH-hhhccCChhhh---hHHHHHHHhhccc-------cCCC-ceeecCcHHHHHH
Confidence 589999999864 33444445554333 2233 334443 33332 22211 1112 3458999999999
Q ss_pred HHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCC-----cEEecCEEEEecChHHHHhhccC-CCCHHHHhhccCcc
Q 036521 139 KVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDG-----FQGFYDGCIMAVHAPDALRILGN-QSTFEEKRLLGAFQ 211 (602)
Q Consensus 139 ~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g-----~~~~ad~VI~A~p~~~a~~ll~~-~~~~~~~~~l~~~~ 211 (602)
+|++.++++|++|+++++|++|..+++++ .|...+| +++.||+||+++|+..+.++++. ...+...+.+.+++
T Consensus 237 aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 316 (492)
T TIGR02733 237 RLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLP 316 (492)
T ss_pred HHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCC
Confidence 99999988899999999999999876642 2222222 46889999999999999999874 23455666788888
Q ss_pred ccceeEEE
Q 036521 212 YVYSDIFL 219 (602)
Q Consensus 212 y~~~~~vl 219 (602)
+++...++
T Consensus 317 ~s~~~~~v 324 (492)
T TIGR02733 317 EPSGAFVF 324 (492)
T ss_pred CCCceEEE
Confidence 87754333
No 41
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.76 E-value=2e-08 Score=96.79 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=51.5
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+++.+...++.+|||+|||+|..+.++|++ |++|+|+|+|++|++.++++++..++.
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~ 78 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD 78 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4556666777889999999999999999996 899999999999999999999888764
No 42
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=4.3e-08 Score=98.52 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=54.1
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
++.++.+++.+. .++.+|||||||+|.++..++++ |++|+|+|+|++|++.|++++++.|+.
T Consensus 31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~ 92 (255)
T PRK11036 31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVS 92 (255)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence 445567787776 45679999999999999999996 899999999999999999999988764
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.75 E-value=3.4e-08 Score=93.89 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=47.3
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
++++.+|||||||+|.+++.++++ .+++|+|||+|++|++.|++++++.+++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~ 95 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK 95 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 456889999999999999999875 5789999999999999999999999875
No 44
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.75 E-value=2.3e-08 Score=96.21 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=50.3
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+++.+.+.++.+|||+|||+|.+++++|++ |++|+|+|+|++|++.++++++..|++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~ 78 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP 78 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 3455666656679999999999999999996 899999999999999999999887764
No 45
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.68 E-value=5e-06 Score=91.84 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=89.5
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCC-hhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHH
Q 036521 64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCP-SEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIA 142 (602)
Q Consensus 64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~-~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~ 142 (602)
..|+.+|++++.-++.++ .++...+ ..++.. +.+. |+.+.+..+.. .....++...||++.++++|++
T Consensus 169 ~~s~~~~~~~~~~~~~l~-~~l~~~~-~~~~~~p~~~~---p~~~~~~~~~~------~~~~g~~~~~gG~~~l~~~L~~ 237 (493)
T TIGR02730 169 PQNAGDIARRYIRDPGLL-KFIDIEC-FCWSVVPADQT---PMINAGMVFSD------RHYGGINYPKGGVGQIAESLVK 237 (493)
T ss_pred hccHHHHHHHhcCCHHHH-HHHHHHH-HhccCCCcccc---hhhhHHHhhcc------cccceEecCCChHHHHHHHHHH
Confidence 378888998875555544 3443222 122322 2232 33322222211 1112345678999999999999
Q ss_pred HHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHH-hhccCC-CCHHHHhhccCccccce
Q 036521 143 LLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDAL-RILGNQ-STFEEKRLLGAFQYVYS 215 (602)
Q Consensus 143 ~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~-~ll~~~-~~~~~~~~l~~~~y~~~ 215 (602)
.++++|++|+++++|++|..++++ +.|.+.+|+++.+|+||+++.+..+. +|++.. ..+.....+.+++++..
T Consensus 238 ~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s 313 (493)
T TIGR02730 238 GLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPS 313 (493)
T ss_pred HHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCc
Confidence 999999999999999999877654 45667788789999999999666554 577632 23334444456665543
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.67 E-value=5.8e-08 Score=91.86 Aligned_cols=57 Identities=28% Similarity=0.439 Sum_probs=46.8
Q ss_pred HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+++.+..-+..++||+|||.|..+++||++ |..|+++|+|+..++.+++.+++.+++
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~ 78 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD 78 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce
Confidence 444555545569999999999999999996 999999999999999999999998886
No 47
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.66 E-value=8.7e-08 Score=92.95 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=54.9
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
....+++.+.++++++|||||||+|..+..+++.. +.+|+|+|+|+++++.|+++++..++.
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~ 123 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW 123 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 45577888889999999999999999999998863 469999999999999999999988765
No 48
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.66 E-value=8e-08 Score=93.96 Aligned_cols=63 Identities=25% Similarity=0.252 Sum_probs=55.6
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.....+++.+.+++|++|||||||+|.++..+++.. ..+|+|+|+++++++.|++++++.|++
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~ 128 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD 128 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence 345678888899999999999999999999999873 346999999999999999999998874
No 49
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.66 E-value=9.5e-08 Score=92.04 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=54.7
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.....+++.+.++++++|||+|||+|.+++.+++. .+++|+|||+|+++++.|++++++.+++
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~ 90 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK 90 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 33345788888889999999999999999999875 4689999999999999999999888764
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.65 E-value=5.7e-08 Score=97.27 Aligned_cols=83 Identities=20% Similarity=0.359 Sum_probs=63.1
Q ss_pred hHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHH
Q 036521 506 NELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAE 584 (602)
Q Consensus 506 ~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~ 584 (602)
++.+...+++.|.|.++.+... ...++.+ ... +.++++|||||||+|.+++.+++. |+ +|+|+|+|+.
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt--------~~~l~~l-~~~-~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~ 153 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTT--------RLCLEAL-EKL-VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQ 153 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHH--------HHHHHHH-Hhh-cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHH
Confidence 4455678899999988876421 1122222 222 457899999999999999988775 55 5999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 036521 585 QLKYAEMKVNEAGLQ 599 (602)
Q Consensus 585 ~l~~a~~~~~~~gl~ 599 (602)
+++.|+++++.+++.
T Consensus 154 ~l~~A~~n~~~~~~~ 168 (250)
T PRK00517 154 AVEAARENAELNGVE 168 (250)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999998874
No 51
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.65 E-value=1.1e-07 Score=90.98 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=53.4
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
...+++.+.+.++.+|||||||+|.+++.++++ .+++|+|+|+|+++++.|+++++..+++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~ 81 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG 81 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 345677888889999999999999999999987 4579999999999999999999887764
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.64 E-value=9.5e-08 Score=95.81 Aligned_cols=59 Identities=25% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
|....+.+++.+...++.+|||||||+|.++..++++ +++|+|+|+|++|++.|+++..
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~ 85 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC
Confidence 4556667788887667789999999999999999885 8999999999999999998753
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.64 E-value=1.3e-07 Score=92.76 Aligned_cols=62 Identities=21% Similarity=0.390 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcc--CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 536 MRKHSLQIEKAR--VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 536 ~~~~~~l~~~l~--l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
....+.+++.+. +.++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++....+.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~ 102 (219)
T TIGR02021 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDV 102 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 344556666665 567899999999999999999985 88999999999999999999987664
No 54
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.64 E-value=1e-07 Score=96.15 Aligned_cols=81 Identities=14% Similarity=0.314 Sum_probs=62.6
Q ss_pred hc-cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEc
Q 036521 502 YD-LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGIT 580 (602)
Q Consensus 502 Yd-~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid 580 (602)
|+ .+-..|+..+++.... . ..+ .....+++.++++++.+|||||||+|..+..+++.++++|+|+|
T Consensus 16 y~~~~~~~~e~~~g~~~~~------~--gg~-----~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD 82 (263)
T PTZ00098 16 YSDEGIKAYEFIFGEDYIS------S--GGI-----EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVD 82 (263)
T ss_pred cccccchhHHHHhCCCCCC------C--Cch-----HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEE
Confidence 44 3446787777755221 1 112 22346788999999999999999999999999887789999999
Q ss_pred CCHHHHHHHHHHHHH
Q 036521 581 LSAEQLKYAEMKVNE 595 (602)
Q Consensus 581 ~S~~~l~~a~~~~~~ 595 (602)
+|++|++.|+++...
T Consensus 83 ~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 83 ICEKMVNIAKLRNSD 97 (263)
T ss_pred CCHHHHHHHHHHcCc
Confidence 999999999998653
No 55
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.64 E-value=6e-08 Score=98.28 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=63.4
Q ss_pred HhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHH
Q 036521 510 ALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKY 588 (602)
Q Consensus 510 ~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~ 588 (602)
...+++.|.|.+|..++ .++.-.+++++ ..+|++|||+|||+|-+++.+++. |+ +|+|+|+++..++.
T Consensus 131 ~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~ 199 (295)
T PF06325_consen 131 VIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEA 199 (295)
T ss_dssp EEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHH
T ss_pred EEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHH
Confidence 45689999988876643 33434445554 568899999999999999998885 76 79999999999999
Q ss_pred HHHHHHHcCCCCC
Q 036521 589 AEMKVNEAGLQVT 601 (602)
Q Consensus 589 a~~~~~~~gl~~~ 601 (602)
|+++++.+|++++
T Consensus 200 a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 200 ARENAELNGVEDR 212 (295)
T ss_dssp HHHHHHHTT-TTC
T ss_pred HHHHHHHcCCCee
Confidence 9999999999864
No 56
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.63 E-value=7.2e-08 Score=88.83 Aligned_cols=51 Identities=29% Similarity=0.710 Sum_probs=45.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+.+.+|||+|||+|.++..++++ .+.+++|||+|++|++.|+++++..+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ 54 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD 54 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc
Confidence 46789999999999999999953 4789999999999999999999998876
No 57
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=1.2e-07 Score=92.38 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=56.4
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
-.....+++.+.+++|++|||||||+|.++..+++.. +++|+|+|+++++++.|+++++..|++
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~ 127 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD 127 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3455678889999999999999999999999998863 369999999999999999999988764
No 58
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.62 E-value=1.7e-07 Score=96.58 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=43.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
.+|.+|||||||+|.++..+++ .|++|+|||+|++|++.|+++++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~ 177 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDP 177 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 4678999999999999999998 49999999999999999998876544
No 59
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.59 E-value=1.7e-07 Score=95.71 Aligned_cols=83 Identities=14% Similarity=0.283 Sum_probs=63.7
Q ss_pred HHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHH
Q 036521 508 LFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLK 587 (602)
Q Consensus 508 ~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~ 587 (602)
-....+++.|.+.++.... .++...+++.. .++|++|||+|||+|.+++.+++....+|+|+|+|+.+++
T Consensus 127 ~~~i~ldpg~aFgtG~h~t---------t~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~ 196 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPT---------TSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVE 196 (288)
T ss_pred cEEEEECCCCcccCCCCHH---------HHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHH
Confidence 3446788999888776642 22222334443 3578999999999999999988853358999999999999
Q ss_pred HHHHHHHHcCCCC
Q 036521 588 YAEMKVNEAGLQV 600 (602)
Q Consensus 588 ~a~~~~~~~gl~~ 600 (602)
.|++++..+++++
T Consensus 197 ~a~~n~~~n~~~~ 209 (288)
T TIGR00406 197 SARKNAELNQVSD 209 (288)
T ss_pred HHHHHHHHcCCCc
Confidence 9999999888764
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.57 E-value=2.1e-07 Score=88.18 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=45.0
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+|++|||||||+|.+++.++.. .+++|+|||+|++|++.+++++++.+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~ 92 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN 92 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC
Confidence 4789999999999999998876 3579999999999999999999988874
No 61
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.57 E-value=2.3e-07 Score=92.77 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=46.2
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
++++.+|||||||+|..+..+++. .+++|+|||+|++|++.|++++...++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~ 108 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP 108 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 467889999999999999988873 5789999999999999999999887664
No 62
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.56 E-value=5.6e-08 Score=93.97 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=40.8
Q ss_pred CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
|++|||+|||+|-++..||+ .|+.|+|||+|+.|++.|++....
T Consensus 90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~ 133 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKM 133 (282)
T ss_pred CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhc
Confidence 58899999999999999999 699999999999999999998543
No 63
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.55 E-value=1.7e-07 Score=94.45 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521 534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
.|.+..+.+++.+.++++.+|||||||+|.++..++++ .+++|+|||+|+.|++.|+++..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~ 76 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP 76 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC
Confidence 34555667888888899999999999999999999987 46899999999999999998753
No 64
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.55 E-value=1.5e-07 Score=94.63 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=49.9
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~ 592 (602)
.+....+++.++.+++.+|||||||+|.++..++++ .+++|+|+|+|+.|++.|+++
T Consensus 15 ~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 15 GRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER 72 (255)
T ss_pred hCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc
Confidence 344557788888889999999999999999999987 478999999999999999764
No 65
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.54 E-value=1.9e-07 Score=95.50 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=44.6
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
++.+|||||||+|..+++++++ |++|+|+|+|+++++.++++++..++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~ 168 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLN 168 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCc
Confidence 3449999999999999999996 899999999999999999999888763
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.53 E-value=3.5e-07 Score=88.26 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=52.4
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..+.++++.++++|||+|||+|.+++.+++. .+.+|+++|+|+++++.|+++++..|+.
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~ 91 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL 91 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999999998875 2469999999999999999999988853
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.52 E-value=3.4e-07 Score=88.54 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHH
Q 036521 529 EDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 529 ~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~ 593 (602)
..+..+....+..++.. +.++.+|||||||+|..+..+++. .+++|+|||+|++|++.|+++.
T Consensus 24 ~~~~~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 24 QSLVAAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred HHHHHHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 34444444555555554 346779999999999999999886 4789999999999999999865
No 68
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.50 E-value=5e-07 Score=83.92 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=56.9
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
......+.+|.+++|++++|||||+|.+++.+|.. +.++|++||-+++.++..++++++.|+++
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n 85 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN 85 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc
Confidence 34446789999999999999999999999999954 57899999999999999999999998653
No 69
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.47 E-value=4.4e-07 Score=99.68 Aligned_cols=56 Identities=23% Similarity=0.403 Sum_probs=50.8
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
.+.+++.+.++++.+|||||||+|..++.++++.+++|+|+|+|++|++.|++++.
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI 310 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh
Confidence 45678888888899999999999999999998778999999999999999998875
No 70
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.46 E-value=4.3e-07 Score=98.63 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=64.2
Q ss_pred CCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521 514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 514 ~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~ 593 (602)
+-.+.++.+-|-+..... ....++.+++.+.+.++++|||+|||+|.+++.+|++ +.+|+|+|+|++|++.|++++
T Consensus 264 g~~f~~~~~~F~q~n~~~---~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~ 339 (443)
T PRK13168 264 GLRLAFSPRDFIQVNAQV---NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENA 339 (443)
T ss_pred CeEEEECCCCeEEcCHHH---HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHH
Confidence 334555555553222221 2456677788888889999999999999999999986 689999999999999999999
Q ss_pred HHcCCC
Q 036521 594 NEAGLQ 599 (602)
Q Consensus 594 ~~~gl~ 599 (602)
+..|++
T Consensus 340 ~~~~~~ 345 (443)
T PRK13168 340 RRNGLD 345 (443)
T ss_pred HHcCCC
Confidence 988874
No 71
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.45 E-value=5.5e-07 Score=89.23 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=50.8
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
..+++.+...++.+|||||||+|.++..+++.. .++|+|+|+|+++++.+++++...++
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 101 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL 101 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc
Confidence 456677777788999999999999999999875 38999999999999999999876544
No 72
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.43 E-value=5.5e-07 Score=84.53 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=50.4
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
+.+++.+++.++++|||||||+|.++..++++ +++|+++|+|+.+++.+++++..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc
Confidence 46788888999999999999999999999997 88999999999999999998753
No 73
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.42 E-value=5e-07 Score=91.57 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=51.0
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
...+.+++.+++.++++|||||||+|.++..++++ +.+|+|+|+|++|++.++++..
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhc
Confidence 44567888889999999999999999999999997 6699999999999999998764
No 74
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=9.1e-07 Score=88.88 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=63.3
Q ss_pred hhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHH
Q 036521 511 LFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYA 589 (602)
Q Consensus 511 ~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a 589 (602)
.-+|+.|.|..|+..+ ..+.-..+++.. ++|++|||+|||+|-+++.+++. |+ +|+|+|+.|..++.|
T Consensus 133 i~lDPGlAFGTG~HpT---------T~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa 201 (300)
T COG2264 133 IELDPGLAFGTGTHPT---------TSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAA 201 (300)
T ss_pred EEEccccccCCCCChh---------HHHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHH
Confidence 4678888888777754 233334455543 48899999999999999998885 76 599999999999999
Q ss_pred HHHHHHcCCC
Q 036521 590 EMKVNEAGLQ 599 (602)
Q Consensus 590 ~~~~~~~gl~ 599 (602)
+++++.++++
T Consensus 202 ~eNa~~N~v~ 211 (300)
T COG2264 202 RENARLNGVE 211 (300)
T ss_pred HHHHHHcCCc
Confidence 9999999987
No 75
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.40 E-value=5.8e-07 Score=89.40 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=45.2
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
+.++.+|||||||+|..+..++++ .+++|+|+|+|++|++.|+++++..+.
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~ 104 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS 104 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC
Confidence 357889999999999999999885 478999999999999999999887654
No 76
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.40 E-value=3.6e-07 Score=85.86 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHccCCC--CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521 532 KVAQMRKHSLQIEKARVSK--GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 532 ~~aq~~~~~~l~~~l~l~~--g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~ 593 (602)
..-|.++.+..++.+.+++ ..-|||||||+|-.+..+... |...+|+|||+.|++.|.++-
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e 92 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERE 92 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhh
Confidence 3456777788889988877 557999999999999988884 899999999999999999643
No 77
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.40 E-value=4.5e-07 Score=85.06 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=52.6
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
|-...++....+.+-.+|.|+|||.|..+..++++ .++.++|||-|++|++.|+++..+.
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~ 77 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDA 77 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCC
Confidence 44456788888888889999999999999999999 7899999999999999998886544
No 78
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.40 E-value=9.6e-07 Score=86.15 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=53.7
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
....+++.+.++++++|||||||+|.++..+++. ..+|+++|+|+++++.|++++++.+++
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~ 126 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH 126 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence 3446777888999999999999999999988886 569999999999999999999887764
No 79
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.39 E-value=1e-06 Score=90.73 Aligned_cols=63 Identities=29% Similarity=0.312 Sum_probs=55.0
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.....+++.++++++++|||||||+|.++..+++..+ .+|+|||+|+++++.|+++++..|++
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~ 131 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE 131 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3455678888899999999999999999999998743 47999999999999999999988764
No 80
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.39 E-value=1e-06 Score=89.76 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=55.7
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
...++.+++.+++.++++|||||||+|.++..++++ +.+|+++|+++.+++.+++++...++
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~ 83 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPL 83 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 456678899999999999999999999999999986 78999999999999999999877653
No 81
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.38 E-value=7.1e-06 Score=88.56 Aligned_cols=119 Identities=11% Similarity=-0.074 Sum_probs=78.8
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCh-hhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHH
Q 036521 63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS-EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVI 141 (602)
Q Consensus 63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~-~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la 141 (602)
+.+|+.+|++++++++..++.+.. +++.....+. +.........+..|...-+.. ...+..++ .+|+++|+++++
T Consensus 164 d~~T~~d~L~~~~ls~~~~d~i~~-~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~--g~~p~~yp-~gG~g~L~qal~ 239 (443)
T PTZ00363 164 KTMTMAQLYKKFGLEDNTIDFVGH-AVALYTNDDYLNKPAIETVMRIKLYMDSLSRY--GKSPFIYP-LYGLGGLPQAFS 239 (443)
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHH-HHHhhcccccccCCHHHHHHHHHHHHHHHhhc--cCCcceee-CCCHHHHHHHHH
Confidence 468999999999999987764432 2222211110 111112233333344321111 12344555 799999999999
Q ss_pred HHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEe
Q 036521 142 ALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMA 185 (602)
Q Consensus 142 ~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A 185 (602)
+.+...|++++++++|++|..++++ +.|++.+|+++.|++||+.
T Consensus 240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~ 285 (443)
T PTZ00363 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICD 285 (443)
T ss_pred HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEEC
Confidence 8877779999999999999887654 5688888988999999885
No 82
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.37 E-value=9.2e-07 Score=86.65 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=63.3
Q ss_pred HHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc
Q 036521 493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT 572 (602)
Q Consensus 493 ~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~ 572 (602)
..++.|+++||..+..+..+.. ......+++.+...++.+|||+|||+|..+..++++.
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLH---------------------RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccH---------------------HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 4567888999988777654321 1222355666666788999999999999999999875
Q ss_pred C--CEEEEEcCCHHHHHHHHHHHH
Q 036521 573 G--CNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 573 g--~~v~gid~S~~~l~~a~~~~~ 594 (602)
+ ++++|+|+|+.+++.++++..
T Consensus 62 ~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 62 PDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred CCCceEEEEECCHHHHHHHHHHhc
Confidence 4 599999999999999998864
No 83
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.2e-06 Score=83.31 Aligned_cols=63 Identities=22% Similarity=0.209 Sum_probs=57.4
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.+...+++.|.+++|++|||||||+|..+..+|+- ..+|++|+..++..+.|+++.+..|+.+
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 35568899999999999999999999999999996 5599999999999999999999999853
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=98.37 E-value=1.1e-06 Score=86.40 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=51.2
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
+...+..+.++++++|||+|||+|.+++.+++. ++ +|+|+|+|+++++.|+++++..++
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~ 84 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV 84 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 334566677888999999999999999999986 55 999999999999999999987765
No 85
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.37 E-value=1.7e-06 Score=81.22 Aligned_cols=73 Identities=21% Similarity=0.412 Sum_probs=55.2
Q ss_pred ccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 521 CPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 521 ~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+.|.. ..++.+..-..+.+... ++.+|||+|||+|.+++.++++ ...+|+++|+|+.+++.|+++++..+++
T Consensus 8 ~gvFs~--~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~ 81 (170)
T PF05175_consen 8 PGVFSP--PRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE 81 (170)
T ss_dssp TTSTTT--TSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred CCeeCC--CCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 455532 33444444333333333 6779999999999999999997 3447999999999999999999999876
No 86
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.37 E-value=7.1e-07 Score=92.37 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=46.1
Q ss_pred HHHHHHccC-CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521 540 SLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 540 ~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
+.+++.+.+ .++.+|||||||+|.++..++++ .+.+|+|+|+|++|++.|+++..
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~ 158 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh
Confidence 345666655 46789999999999999998886 35799999999999999999764
No 87
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.37 E-value=1.2e-06 Score=90.79 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=51.4
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.++.+.+.+...++.+|||+|||+|.+++.+|++ +++|+|+|+|+++++.|+++++..|++
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~ 221 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLT 221 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4444445554345689999999999999999995 899999999999999999999998874
No 88
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.37 E-value=6.6e-07 Score=81.63 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcc---CCCC-CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 533 VAQMRKHSLQIEKAR---VSKG-HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 533 ~aq~~~~~~l~~~l~---l~~g-~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+|++++++++.+... +.+. .+|||+|||.|.+...|+++ ...+.+|||.|++.++.|+..++..++++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n 118 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN 118 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence 577888888888776 4444 49999999999999999997 33469999999999999999999999886
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=98.36 E-value=1.3e-06 Score=83.12 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=51.4
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.+++.+...++.+|||+|||.|.++..++++ +++|+|+|+|+++++.++++++..++.+
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 72 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN 72 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 3445555578889999999999999999997 8999999999999999999998887754
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.35 E-value=1.6e-06 Score=89.26 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=59.7
Q ss_pred hhhc-cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEE
Q 036521 500 YHYD-LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNY 576 (602)
Q Consensus 500 ~~Yd-~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v 576 (602)
-+|| .+.+.|+.+..- +.||....+ .+--....+.|++.+ +++.+|||+|||+|..+..+++.. +.+|
T Consensus 21 ~~yd~~G~~lf~~i~~~-----peYy~tr~E--~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~ 91 (301)
T TIGR03438 21 YFYDARGSELFEQICEL-----PEYYPTRTE--AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARY 91 (301)
T ss_pred hcccchHHHHHHHHHCC-----CccccHHHH--HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeE
Confidence 3566 567788877542 234432111 011122223344444 467899999999999999999873 6899
Q ss_pred EEEcCCHHHHHHHHHHHHHc
Q 036521 577 TGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 577 ~gid~S~~~l~~a~~~~~~~ 596 (602)
+|||+|++|++.|++++...
T Consensus 92 ~~iDiS~~mL~~a~~~l~~~ 111 (301)
T TIGR03438 92 VPIDISADALKESAAALAAD 111 (301)
T ss_pred EEEECCHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 91
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.34 E-value=1.1e-06 Score=84.93 Aligned_cols=50 Identities=32% Similarity=0.490 Sum_probs=45.1
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
++.+|||||||+|.++..+++. .+++|+|||+|++|++.|+++++..++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~ 90 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT 90 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC
Confidence 6779999999999999999987 4679999999999999999999887763
No 92
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.33 E-value=1.3e-06 Score=87.90 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
.+..+.+++.+++.++++|||||||+|.++..++++ +.+|+|||+++.+++.+++++..
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~ 73 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA 73 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc
Confidence 456678889999999999999999999999999997 78999999999999999988753
No 93
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.32 E-value=1.4e-06 Score=84.77 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=41.6
Q ss_pred HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
.++.+.+.++.+|||+|||.|..++++|++ |++|||||+|+..++.+.+
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHH
Confidence 344444457779999999999999999996 9999999999999998643
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.32 E-value=2e-06 Score=87.62 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=46.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+++.+|||+|||+|.+++.++++ .+++|+|+|+|+++++.|+++++..|+.+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~ 172 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLED 172 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 44579999999999999999987 46899999999999999999999988753
No 95
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.32 E-value=1.4e-06 Score=91.45 Aligned_cols=73 Identities=11% Similarity=0.273 Sum_probs=57.0
Q ss_pred ccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 521 CPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 521 ~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+.|... .++..- +.+++.+....+.+|||+|||+|.+++.++++ ++++|+++|+|+.+++.|+++++.++.+
T Consensus 205 ~gVFs~~--~LD~Gt----rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~ 278 (378)
T PRK15001 205 ANVFSRT--GLDIGA----RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 278 (378)
T ss_pred CCccCCC--CcChHH----HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 5777643 333333 24666776555679999999999999999987 4789999999999999999999877643
No 96
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.31 E-value=1.4e-06 Score=82.53 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=47.8
Q ss_pred HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
+.+.+...++++|||+|||+|.++..+++. +.+|+|+|+|++|++.++++++..++
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~ 66 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV 66 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 445555556789999999999999999986 55999999999999999999987765
No 97
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.31 E-value=3.5e-07 Score=86.42 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=65.9
Q ss_pred HhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE
Q 036521 496 RNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN 575 (602)
Q Consensus 496 ~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~ 575 (602)
.-|..-+|.-.+-|+..+-+...|+. -.+++.++.+++..+=.++||+|||||-.+..+-.. -.+
T Consensus 85 aYVe~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ 149 (287)
T COG4976 85 AYVETLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADR 149 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hhh
Confidence 45667788888888888777767753 235567788888777789999999999999887664 568
Q ss_pred EEEEcCCHHHHHHHHHH
Q 036521 576 YTGITLSAEQLKYAEMK 592 (602)
Q Consensus 576 v~gid~S~~~l~~a~~~ 592 (602)
.+|||||+.|++.|.++
T Consensus 150 ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 150 LTGVDISENMLAKAHEK 166 (287)
T ss_pred ccCCchhHHHHHHHHhc
Confidence 99999999999999875
No 98
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.28 E-value=2e-06 Score=89.67 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=49.6
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+++.+......+|||+|||+|.+++.++++ .+.+|+++|+|+.+++.|+++++..+++
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~ 246 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE 246 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3455555444558999999999999999987 4579999999999999999999988875
No 99
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.27 E-value=3.8e-06 Score=86.27 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+..-+.+.++..++..+|++|||||||+|.++..++.. |+ .|+|||+|+.|+.+++.
T Consensus 105 ~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~ 162 (314)
T TIGR00452 105 RSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEA 162 (314)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH
Confidence 33445567888888888999999999999999999886 54 79999999999987654
No 100
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.27 E-value=1.4e-06 Score=83.65 Aligned_cols=50 Identities=38% Similarity=0.595 Sum_probs=45.4
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
...+|||||||+|.++..+|++ .+.+|+|||+|+++++.|+++++..++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ 66 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC
Confidence 4569999999999999999987 5789999999999999999999988775
No 101
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.27 E-value=2e-06 Score=83.09 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
-.....+++.+.+++|++|||||||+|..+..+|+-.| .+|++||+.++.++.|+++++..++.
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~ 123 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID 123 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC
Confidence 34566889999999999999999999999999998633 47999999999999999999988764
No 102
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.25 E-value=1.3e-06 Score=74.42 Aligned_cols=45 Identities=31% Similarity=0.637 Sum_probs=37.5
Q ss_pred EEEEecCchHHHHHHHhcc--C--CEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 554 VLEIGCGWGTFAIEVVRQT--G--CNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 554 vLDiGcG~G~~~~~la~~~--g--~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
|||+|||+|..+..+++.. + .+++|||+|++|++.++++....+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~ 49 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP 49 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC
Confidence 7999999999999999863 3 7999999999999999999987665
No 103
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.25 E-value=2.4e-06 Score=88.22 Aligned_cols=62 Identities=16% Similarity=0.320 Sum_probs=54.8
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.+.+++.++++++.+|||||||+|.+++.++++ ++++++++|+ +++++.+++++++.|++++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~r 200 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADR 200 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccce
Confidence 345777888889999999999999999999998 5789999997 7999999999999998754
No 104
>PRK04266 fibrillarin; Provisional
Probab=98.24 E-value=2.1e-06 Score=84.29 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
+++++++|++|||+|||+|.++.++++.. +.+|+|+|+|++|++.+.+++++
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~ 118 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE 118 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh
Confidence 46899999999999999999999999974 36899999999999988877764
No 105
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.24 E-value=1.3e-05 Score=88.76 Aligned_cols=144 Identities=15% Similarity=0.013 Sum_probs=94.6
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHH-HHHHhcCccccCCCCcEEEecCCcHhHHHHHH
Q 036521 63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSIL-SFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVI 141 (602)
Q Consensus 63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l-~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la 141 (602)
...|+.+|+++.. ..+..+.++. +....++.+|.+. |+.+.+ .+... .. ..+...||++.++++|+
T Consensus 160 ~~~s~~~~~~~~~-~~~~l~~~l~-~~~~~~g~~p~~~---~~~~~l~~~~~~-------~~-g~~~~~gG~~~l~~al~ 226 (502)
T TIGR02734 160 AWRSLYSKVARFF-SDERLRQAFS-FHALFLGGNPFRT---PSIYALISALER-------EW-GVWFPRGGTGALVAAMA 226 (502)
T ss_pred CcCCHHHHHHhhc-CCHHHHHHhc-ccceeeccCcccc---hHHHHHHHHHHh-------hc-eEEEcCCCHHHHHHHHH
Confidence 4689999999864 4444444443 2233556666554 222222 22211 11 23356899999999999
Q ss_pred HHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHHh-hccCCCCH-HHHhhccCccccceeEE
Q 036521 142 ALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDALR-ILGNQSTF-EEKRLLGAFQYVYSDIF 218 (602)
Q Consensus 142 ~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~~-ll~~~~~~-~~~~~l~~~~y~~~~~v 218 (602)
+.+.++|++|+++++|++|..++++ +.|.+.+|+++.||+||+|+++..+.. |++....+ ...+.+.++++.....+
T Consensus 227 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~ 306 (502)
T TIGR02734 227 KLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFV 306 (502)
T ss_pred HHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeE
Confidence 9999999999999999999987765 567778887899999999999877664 55432222 23345566665554433
Q ss_pred E
Q 036521 219 L 219 (602)
Q Consensus 219 l 219 (602)
+
T Consensus 307 ~ 307 (502)
T TIGR02734 307 L 307 (502)
T ss_pred E
Confidence 3
No 106
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.23 E-value=2.9e-06 Score=82.89 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=41.7
Q ss_pred HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521 542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAE 590 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~ 590 (602)
.++.+.+.++.+|||+|||.|..+++||++ |++|+|||+|+..++.+.
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFF 76 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHH
Confidence 344455667789999999999999999996 999999999999999874
No 107
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.23 E-value=3.7e-06 Score=87.15 Aligned_cols=60 Identities=23% Similarity=0.198 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
...+.+.++..++..+|.+|||||||+|.++..+++.....|+|||+|+.|+.+++...+
T Consensus 107 s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~ 166 (322)
T PRK15068 107 SDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRK 166 (322)
T ss_pred HHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHH
Confidence 344556677777766788999999999999999999733479999999999987665443
No 108
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.22 E-value=2.4e-06 Score=83.63 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=53.1
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.+.....+....+|||||||.|.+++.+|++ ..++++||++++++.+.|+++++.+++++|
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~r 96 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEER 96 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhc
Confidence 3445556666789999999999999999998 459999999999999999999999988765
No 109
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=3.1e-06 Score=84.59 Aligned_cols=61 Identities=21% Similarity=0.462 Sum_probs=55.1
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+.+++.+....+.+|||+|||+|.+++.+|++ +..+||-+|+|...++.||++++.+++++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~ 209 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN 209 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc
Confidence 36788888877779999999999999999998 46899999999999999999999998875
No 110
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.21 E-value=4.2e-06 Score=85.46 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.6
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
++.+|||+|||+|.+++.+++. .+++|+|+|+|+++++.|+++++..++++
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~ 165 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEH 165 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 3369999999999999999987 45899999999999999999999888753
No 111
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.21 E-value=7.7e-06 Score=80.96 Aligned_cols=62 Identities=32% Similarity=0.481 Sum_probs=51.9
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
...++.+...+...++.+|||||||+|.++..+++. +++|+|+|+|+++++.|++++...++
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~ 95 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL 95 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC
Confidence 344456666666668899999999999999999985 89999999999999999998876554
No 112
>PRK08317 hypothetical protein; Provisional
Probab=98.21 E-value=3.7e-06 Score=83.18 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=49.2
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHH
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~ 592 (602)
..+.+++.+.++++++|||||||+|.++..++++. +++|+|+|+|+.+++.|+++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 33567888899999999999999999999999874 47999999999999999988
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.20 E-value=3.8e-06 Score=88.43 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
++.+++.+ +++.+|||+|||+|.+++.++++ .+++|+|+|+|+++++.|+++++..+.
T Consensus 242 Ve~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~ 300 (423)
T PRK14966 242 VEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA 300 (423)
T ss_pred HHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 34444443 45679999999999999999875 578999999999999999999987764
No 114
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.20 E-value=3.7e-06 Score=87.71 Aligned_cols=59 Identities=27% Similarity=0.413 Sum_probs=52.8
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.+++.+++++|++|||+|||+|.+++.++. .+++|+|+|+|++|++.|+++++..|+++
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~ 231 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED 231 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC
Confidence 456667889999999999999999999887 59999999999999999999999988764
No 115
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.9e-06 Score=85.05 Aligned_cols=46 Identities=24% Similarity=0.509 Sum_probs=43.3
Q ss_pred eEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 553 GVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 553 ~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
+|||||||+|.+++.+|.+ ..++|+|+|+|+..++.|+++++..|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l 159 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 7999999999999999997 346999999999999999999999997
No 116
>PRK06202 hypothetical protein; Provisional
Probab=98.20 E-value=2.5e-06 Score=84.49 Aligned_cols=51 Identities=25% Similarity=0.473 Sum_probs=42.0
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc-----cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~-----~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
..++.+|||||||+|.++..+++. .+++|+|+|+|++|++.|+++....++
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~ 113 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV 113 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC
Confidence 356789999999999999888753 246999999999999999998754443
No 117
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.19 E-value=4.1e-06 Score=87.61 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.+++.+....+..+||||||+|.++..+|++ ++..++|||+++.+++.|.+++...|+++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N 173 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN 173 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 4556666666789999999999999999998 57899999999999999999999988754
No 118
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.18 E-value=2.9e-06 Score=74.12 Aligned_cols=50 Identities=32% Similarity=0.624 Sum_probs=45.3
Q ss_pred CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
|.+|||+|||.|.+++.+++....+++|+|+++..++.|++++...++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~ 50 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDD 50 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCc
Confidence 57999999999999999998633899999999999999999999988754
No 119
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.17 E-value=5.6e-06 Score=89.77 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=55.6
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..+++.+.+.+.++++++|||+|||.|.+++.+|+. ..+|+|||+|+++++.|+++++..|++
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~ 340 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA 340 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC
Confidence 455666777778888899999999999999999985 679999999999999999999988874
No 120
>PRK04148 hypothetical protein; Provisional
Probab=98.17 E-value=6.8e-06 Score=72.85 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHccCCCCCeEEEEecCchH-HHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGT-FAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~-~~~~la~~~g~~v~gid~S~~~l~~a~~~~ 593 (602)
+.+.+.+....+.+|||||||.|. ++..|++. |++|+++|+|++.++.++++.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhC
Confidence 345566655667899999999996 99999985 999999999999888887763
No 121
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.16 E-value=6.2e-06 Score=84.87 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=45.1
Q ss_pred CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.+|||+|||+|.+++.++++ .+++|+|+|+|+.+++.|+++++..|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~ 184 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLED 184 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC
Confidence 68999999999999999987 46899999999999999999999988754
No 122
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.16 E-value=4.6e-06 Score=84.66 Aligned_cols=55 Identities=27% Similarity=0.430 Sum_probs=47.3
Q ss_pred HccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 545 KARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 545 ~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..++++|++|||||||+|..++.+++..+ .+|+|+|+|++|++.|+++....++.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~ 128 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT 128 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC
Confidence 34678999999999999999888877644 47999999999999999998887763
No 123
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.16 E-value=6.4e-06 Score=84.58 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=46.1
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEA-GLQVT 601 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~-gl~~~ 601 (602)
++.+|||||||+|.+...++.+ ++++++|+|+++..++.|+++++.. +++++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCc
Confidence 4579999999999888887765 7899999999999999999999998 78653
No 124
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.15 E-value=1.9e-06 Score=71.84 Aligned_cols=43 Identities=40% Similarity=0.753 Sum_probs=37.6
Q ss_pred EEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 555 LEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 555 LDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
||||||.|..+..++++.+.+|+|+|+|++|++.++++....+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~ 43 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG 43 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC
Confidence 8999999999999999658899999999999999999987654
No 125
>PRK06922 hypothetical protein; Provisional
Probab=98.15 E-value=3.7e-06 Score=92.51 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=44.1
Q ss_pred cCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 547 RVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 547 ~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
...++.+|||||||+|.++..++++ .+++|+|+|+|+.|++.|+++....+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g 466 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG 466 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 3446889999999999999998886 57899999999999999999876544
No 126
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.13 E-value=3.6e-06 Score=78.78 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=43.3
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
.|.+. ++||.||||+|||.|.+..+|.++.++++.||+++++.+..+.++
T Consensus 6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r 55 (193)
T PF07021_consen 6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR 55 (193)
T ss_pred HHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc
Confidence 34443 578999999999999999999987899999999999998887654
No 127
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.12 E-value=6.5e-06 Score=82.61 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=51.6
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
....+.+++.+++.++++|||||||+|.++..++++ +.+|+++|+++.+++.++++..
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhC
Confidence 455667888888889999999999999999999996 6789999999999999998764
No 128
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.10 E-value=5.3e-06 Score=76.63 Aligned_cols=40 Identities=33% Similarity=0.718 Sum_probs=36.9
Q ss_pred CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHH
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKY 588 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~ 588 (602)
.+++.+|||||||.|.++..+++. |++|+|+|+|+.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh
Confidence 678899999999999999999885 8899999999999976
No 129
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.10 E-value=1e-05 Score=80.94 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=42.8
Q ss_pred CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
+.+|||+|||+|.+++.++++ .+.+|+|+|+|+++++.|+++++..+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~ 135 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG 135 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 458999999999999999876 467999999999999999999987653
No 130
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.10 E-value=1.1e-05 Score=80.76 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=50.9
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..++.+++.+. ..+.+|||+|||+|.++..+++. .+++|+|+|+|+++++.|+++++..+++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~ 137 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD 137 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 34445555554 34569999999999999999986 4679999999999999999999988764
No 131
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2.4e-05 Score=83.48 Aligned_cols=157 Identities=14% Similarity=0.037 Sum_probs=102.1
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh-HHHH
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS-YVNK 139 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~-l~~~ 139 (602)
+.|++|+.|||++++..+......|.|++.+.....++..+.-+.+..+..+.-.. .+.+...-+.+++.+ +..+
T Consensus 145 eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~----~~~~i~~~~~g~~~E~~~~p 220 (485)
T COG3349 145 ELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT----LEASILRNLRGSPDEVLLQP 220 (485)
T ss_pred HHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc----cCcchhhhhcCCCcceeeeh
Confidence 34789999999999999999999999999999988888764434333333332110 122333344555443 4578
Q ss_pred HHHHHhcCCCeEEeCCceeEEEecC---C--eEEEEeCCCc---EEecCEEEEecChHHHHhhccCCCC-HHHHhhccCc
Q 036521 140 VIALLESLGCQIKTGCEVCSVLQYD---E--GRTEVRGDGF---QGFYDGCIMAVHAPDALRILGNQST-FEEKRLLGAF 210 (602)
Q Consensus 140 la~~l~~~g~~v~l~t~V~~i~~~~---~--gv~v~~~~g~---~~~ad~VI~A~p~~~a~~ll~~~~~-~~~~~~l~~~ 210 (602)
+.++++++|.++++..+|..|.-+. . .+.+... +. ...++.++-+..-+...++++.++. .++...|...
T Consensus 221 ~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l 299 (485)
T COG3349 221 WTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGL 299 (485)
T ss_pred hhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccc
Confidence 8999999999999999999997654 2 1223222 32 2346666666666777777775554 4455555555
Q ss_pred cccceeEEE-ecC
Q 036521 211 QYVYSDIFL-HRD 222 (602)
Q Consensus 211 ~y~~~~~vl-~~d 222 (602)
...+.+.+. .+|
T Consensus 300 ~~~p~~~~~l~~~ 312 (485)
T COG3349 300 RLVPVITLHLRFD 312 (485)
T ss_pred cccceeEEEEeec
Confidence 556665443 344
No 132
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.07 E-value=7e-06 Score=78.87 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=41.7
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
.+.+.+ +++++|||||||+|.++..+++..++.++|||+|+++++.|++
T Consensus 6 ~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 6 SILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred HHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence 444443 4788999999999999999987767899999999999999865
No 133
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.07 E-value=1.2e-05 Score=85.30 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=58.9
Q ss_pred CCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 516 SMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 516 ~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
.+.++..-|-+...... ..+++.+.+.+...++.+|||+|||+|.+++.+|.+ +.+|+|||+|+.+++.|+++++.
T Consensus 202 ~~~~~~~~F~Q~n~~~~---~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~ 277 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVA---AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQM 277 (374)
T ss_pred EEEECCCccccCCHHHH---HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHH
Confidence 45555554533333322 233444455554445679999999999999999985 78999999999999999999999
Q ss_pred cCCC
Q 036521 596 AGLQ 599 (602)
Q Consensus 596 ~gl~ 599 (602)
.+++
T Consensus 278 ~~~~ 281 (374)
T TIGR02085 278 LGLD 281 (374)
T ss_pred cCCC
Confidence 8874
No 134
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.06 E-value=9.2e-06 Score=87.79 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=52.5
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+...+++++|++|||+|||+|+.+.++++.. +.+|+++|+|+++++.++++++..|+.
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~ 294 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK 294 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 45567788899999999999999999999874 369999999999999999999988764
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.06 E-value=1.1e-05 Score=88.80 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=45.8
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
++.+|||+|||+|.+++.++++ .+++|+|+|+|+++++.|+++++..++.+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~ 189 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTD 189 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCcc
Confidence 3568999999999999999876 57899999999999999999999888754
No 136
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.6e-05 Score=73.81 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=44.0
Q ss_pred HccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521 545 KARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 545 ~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~ 595 (602)
..+.=.|..|+|+|||+|.+++.++-. | .+|+|||+++++++.+++++.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHh
Confidence 344457889999999999999988874 6 6999999999999999999987
No 137
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=1e-05 Score=78.74 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=47.7
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.+.++||+|||+|.+++.++.. ..++|++||.|+..+..|.++++..++.++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence 4558999999999999999887 679999999999999999999999999875
No 138
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.04 E-value=9.8e-06 Score=87.43 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=52.5
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+...+++++|.+|||+|||+|+.+.++++.. +.+|+++|+|+++++.+++++++.|+.
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~ 288 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 34456788999999999999999999999863 579999999999999999999998875
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.03 E-value=1e-05 Score=88.02 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=52.5
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+...+.+++|++|||+|||+|+.+.++++.. +++|+++|+|+++++.++++++..|++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~ 301 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT 301 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 44556778899999999999999999999863 579999999999999999999998875
No 140
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.02 E-value=1.4e-05 Score=80.66 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
...+++++|++|||+|||.|+.+..+|+.. ...|+++|+|+++++.++++++..|+.
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 346678899999999999999999998863 358999999999999999999998874
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.01 E-value=1.3e-05 Score=87.22 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=51.8
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..+..+.+.+|++|||+|||+|+.+.++++.. +.+|+|+|+|+++++.+++++++.|++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 301 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT 301 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 34566778899999999999999999998752 469999999999999999999998875
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.01 E-value=1.2e-05 Score=86.85 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=53.5
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+...+++++|++|||+|||.|+.+.++++.. +++|+++|+|+++++.++++++..|++
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~ 288 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT 288 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 56677888999999999999999999999874 479999999999999999999998875
No 143
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.01 E-value=8.1e-05 Score=81.41 Aligned_cols=209 Identities=13% Similarity=0.089 Sum_probs=120.7
Q ss_pred cEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHHh--hccCCCC-
Q 036521 125 QWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDALR--ILGNQST- 200 (602)
Q Consensus 125 ~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~~--ll~~~~~- 200 (602)
....+.+|+..++..+++.| +|+++.+|..|...+++ +.++..++..+.+|.||+++|...+.. +...|+.
T Consensus 210 ~~~~~~~G~~~v~~~la~~l-----~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 210 IHLLMKGGYEPVVNSLAEGL-----DIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred chhHhhCCccHHHhhcCCCc-----ceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 44678899999999999866 89999999999998777 344444454589999999999999887 5444444
Q ss_pred HHHHhhccCccccce-eEEEecCCCCCCCCCC-----------cccc--cccccCCCCCeEEEEeccc----cccCCCCC
Q 036521 201 FEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA-----------AWSA--WNFLGGLDGKACLTYWLNV----LQNIGDGE 262 (602)
Q Consensus 201 ~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~-----------~w~s--~n~~~~~~~~~~~t~~~~~----~~~l~~~~ 262 (602)
....+.+.++.+... .+.+.++..+++.+.. .+-. +++.........++...+. ...+++++
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~ 364 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSE 364 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHH
Confidence 445667888877654 4566788777642221 1111 2222212222344443332 12222211
Q ss_pred CCCCeEE---EcCCC-CCCcc---eEEEEEccC---CCCCh----hHHHHHHHHHhhcCCCCeEEecccc---CCCCChh
Q 036521 263 TGLPFLV---TLNPD-HTPNN---TLLKWSTGH---PVPSV----AASKASLELDHIQGKRGIWFCEAYQ---GYGFHED 325 (602)
Q Consensus 263 ~~~~v~~---tl~p~-~~p~~---~l~r~~~~~---p~~~~----~~~~~~~~l~~lqg~~gl~~aG~~~---g~g~~E~ 325 (602)
....++. .+.+. ..+++ .+.+|..-. =.|+. .......++.. .-.+.+||+|.++ ..|.+++
T Consensus 365 ~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~-pi~~~~ffage~t~~~~~~tm~G 443 (501)
T KOG0029|consen 365 IVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAE-PIKNRVFFAGEATSRKYPGTMHG 443 (501)
T ss_pred HHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhc-cccCcEEecchhhcccCCCchHH
Confidence 1111111 11121 11222 466774211 11111 11111122221 1123599999997 4778999
Q ss_pred HHHHHHHHHHHhcC
Q 036521 326 GLKAGMIAAHGVLG 339 (602)
Q Consensus 326 av~SG~~aA~~ll~ 339 (602)
|+.||+.+|..|+.
T Consensus 444 A~~sG~~~a~~i~~ 457 (501)
T KOG0029|consen 444 AYLSGLRAASDILD 457 (501)
T ss_pred HHHhhHHHHHHHHH
Confidence 99999999998854
No 144
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.00 E-value=1.4e-05 Score=78.12 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccC-CCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHH
Q 036521 536 MRKHSLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKY 588 (602)
Q Consensus 536 ~~~~~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~ 588 (602)
..++..+++.+++ .+|..|||||||+|.++..++++ |+ +|+|||+|++|+..
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 3466677888776 47789999999999999999996 54 89999999999886
No 145
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.00 E-value=2.3e-05 Score=75.28 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=44.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.++.+|||+|||+|.+++.++.+...+|++||++++.++.++++++..|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~ 102 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG 102 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 467899999999999999755544569999999999999999999988864
No 146
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.99 E-value=1.8e-05 Score=83.00 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=84.4
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccC-CCCcEEEecCCcHhHHHHHHH
Q 036521 64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLF-GRPQWLTVRSRSHSYVNKVIA 142 (602)
Q Consensus 64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~-~~~~~~~~~gG~~~l~~~la~ 142 (602)
..|..+||+++++++.|++.++.+.++..|+.+. ++ +++ +|+.++- ..+..+.++||+.++++.|.+
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i---~a~--------~G~vSla~a~~gl~sV~GGN~qI~~~ll~ 136 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NI---HAF--------AGLVSLAGATGGLWSVEGGNWQIFEGLLE 136 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-ch---hhh--------hhheeeeeccCCceEecCCHHHHHHHHHH
Confidence 4689999999999999999999999999998753 33 221 2322221 234567999999999999998
Q ss_pred HHhcCCCeEEeCCceeEE-EecCCe---EEEEeCC--C-cEEecCEEEEecChHHHH
Q 036521 143 LLESLGCQIKTGCEVCSV-LQYDEG---RTEVRGD--G-FQGFYDGCIMAVHAPDAL 192 (602)
Q Consensus 143 ~l~~~g~~v~l~t~V~~i-~~~~~g---v~v~~~~--g-~~~~ad~VI~A~p~~~a~ 192 (602)
.- +.+| ++++|++| .+.+++ ++|+..+ + ....+|.||+|+|-+...
T Consensus 137 ~S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 137 AS---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred Hc---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 76 8899 99999999 455554 4565432 2 234689999999996654
No 147
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.99 E-value=1.9e-05 Score=80.08 Aligned_cols=45 Identities=27% Similarity=0.520 Sum_probs=38.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcc----CCEEEEEcCCHHHHHHHHHHH
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQT----GCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~----g~~v~gid~S~~~l~~a~~~~ 593 (602)
.++.+|||||||+|.++..+++.. ++.|+|+|+|++|++.|+++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence 455789999999999999988752 358999999999999998764
No 148
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.96 E-value=4e-07 Score=77.20 Aligned_cols=44 Identities=32% Similarity=0.624 Sum_probs=37.1
Q ss_pred EEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 555 LEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 555 LDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
||||||+|.++..++++ .+.+++|+|+|+.|++.|+++..+.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~ 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC
Confidence 79999999999999987 578999999999999999999887664
No 149
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.96 E-value=2.1e-05 Score=77.81 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccC---CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521 535 QMRKHSLQIEKARV---SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 535 q~~~~~~l~~~l~l---~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
|......+++.+.. ..+.+|||||||+|.++..+++. ...+|+|+|+|+++++.++++..
T Consensus 16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence 33344444444432 34479999999999999999987 35689999999999999998753
No 150
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.95 E-value=3.1e-05 Score=81.41 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..+++.+++.+...+ .+|||++||+|.+++.+++. ..+|+|||+|+++++.|+++++.+|++
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 345556666665434 47999999999999999986 469999999999999999999998875
No 151
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.94 E-value=2.8e-05 Score=78.92 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=47.4
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
.+.++..+...++.+|||+|||+|.+++.+++. ..++|+|+|+|+++++.|+++++
T Consensus 97 ~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred HHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 334444555667889999999999999999987 35899999999999999999987
No 152
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.93 E-value=1.9e-05 Score=80.11 Aligned_cols=58 Identities=7% Similarity=0.058 Sum_probs=51.9
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHH
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
+++.+++.+.+++|..+||.+||.|+.+..+++.. .++|+|+|.++++++.|+++..+
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 45678899999999999999999999999999984 48999999999999999988754
No 153
>PHA03411 putative methyltransferase; Provisional
Probab=97.93 E-value=3.6e-05 Score=76.61 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHH
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~ 593 (602)
+++.+|||+|||+|.+++.++++. +.+|+|+|+|++|++.|+++.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 445699999999999999888763 679999999999999999864
No 154
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.91 E-value=2.2e-05 Score=84.99 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+...+++++|++|||+|||.|+.+.++++.. ..+|+++|+|+++++.++++++..|+.
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~ 303 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK 303 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 45566788999999999999999999999863 369999999999999999999999875
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.90 E-value=2.8e-05 Score=76.86 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=47.4
Q ss_pred cCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 547 RVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 547 ~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
...+.++|||||||+|..++.+|+. .+.+|+++|+++++++.|+++++++|++++
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~ 121 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHK 121 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 3445779999999999988888875 357999999999999999999999998753
No 156
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.89 E-value=1.8e-05 Score=83.09 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=79.2
Q ss_pred cEEEecCCcHhHHHHHHHHHhcC------CCeEEeCCceeEEEecC-CeEEEEeCCCcEEecCEEEEecChHHHHh----
Q 036521 125 QWLTVRSRSHSYVNKVIALLESL------GCQIKTGCEVCSVLQYD-EGRTEVRGDGFQGFYDGCIMAVHAPDALR---- 193 (602)
Q Consensus 125 ~~~~~~gG~~~l~~~la~~l~~~------g~~v~l~t~V~~i~~~~-~gv~v~~~~g~~~~ad~VI~A~p~~~a~~---- 193 (602)
.....+-|...+.+-|++.+++. -++++++++|..|...+ +.|.|...||+.+.||+||+++|--...+
T Consensus 214 ~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~ 293 (498)
T KOG0685|consen 214 LLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHK 293 (498)
T ss_pred hheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence 34455667888888888877521 12345559999999875 45899999999999999999999877776
Q ss_pred hccCCCCHHHHhhccCccccc-eeEEEecCCCCCCCC
Q 036521 194 ILGNQSTFEEKRLLGAFQYVY-SDIFLHRDKNFMPRN 229 (602)
Q Consensus 194 ll~~~~~~~~~~~l~~~~y~~-~~~vl~~d~~l~p~~ 229 (602)
++.++++..-.+++.++.+-. +-+.+-+..+++|.+
T Consensus 294 lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 294 LFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred hcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence 777656666778888888855 467788888887765
No 157
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.89 E-value=2.8e-05 Score=78.40 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=48.3
Q ss_pred cCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchH----HHHHHHhcc------CCEEEEEcCCHHHHHHHHHHH
Q 036521 524 FKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGT----FAIEVVRQT------GCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 524 ~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~----~~~~la~~~------g~~v~gid~S~~~l~~a~~~~ 593 (602)
|-.+...++.-....+..+++.....++.+|||+|||+|. +++.+++.. +.+|+|+|+|++|++.|++.+
T Consensus 73 FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 73 FFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred ccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 3333444544444444444544444556799999999996 566666641 478999999999999999854
No 158
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=3.9e-05 Score=74.68 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=56.3
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.|+..+++.||++|||.|.|+|.++.++|.. ...+|++.++-++.++.|++++++.|+.++
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~ 147 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDR 147 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccc
Confidence 6889999999999999999999999999975 236999999999999999999999999874
No 159
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.88 E-value=5.1e-05 Score=74.52 Aligned_cols=48 Identities=35% Similarity=0.603 Sum_probs=43.4
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
.+.+|||+|||+|.++..+++. +++|+|+|+|+++++.+++++...+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4779999999999999999885 78999999999999999999887665
No 160
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.86 E-value=5e-05 Score=80.79 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=45.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+|.+|||+|||+|++++.++.. |+ +|++||+|+.+++.|+++++.+|++
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~ 269 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLD 269 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 36889999999999999987764 55 9999999999999999999999985
No 161
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=4.1e-05 Score=81.96 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+...+++..++.++..++++|||+=||.|.+++.+|++ ..+|+|+++++++++.|+++++.+|+.+
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N 342 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN 342 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc
Confidence 33577888999999989999999999999999999985 8899999999999999999999999875
No 162
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.84 E-value=2.6e-05 Score=85.80 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=45.4
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
..+++.+...++.+|||||||.|.++..++++ +.+|+|||+|++|++.+++.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~ 78 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESI 78 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHH
Confidence 45677777777889999999999999999996 77999999999999988654
No 163
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.83 E-value=6.6e-05 Score=79.26 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=51.0
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..+++.+.+.+... +.+|||++||+|.+++.+++. ..+|+|||+|+.+++.|+++++..|++
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 34555666655433 357999999999999999985 568999999999999999999998875
No 164
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.81 E-value=7.8e-05 Score=71.20 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=45.8
Q ss_pred CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+|.+|||++||+|.+++.++.+ |+ +|++||.+++.++.++++++..++++
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~ 99 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGE 99 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcc
Confidence 5789999999999999999997 55 89999999999999999999988764
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=5.5e-05 Score=74.77 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=53.2
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
.+.++.|++.+++.+++.|||||+|.|.++..++++ +.+|++|++++.+++..+++..
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc
Confidence 345778999999999999999999999999999996 8899999999999999998864
No 166
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.79 E-value=0.00022 Score=73.82 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=85.5
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCcc-ccCCCCcEEEecCCcHhHHHHHHHH
Q 036521 65 ETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLL-QLFGRPQWLTVRSRSHSYVNKVIAL 143 (602)
Q Consensus 65 ~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~-~~~~~~~~~~~~gG~~~l~~~la~~ 143 (602)
++..+|+.++.-...|. .+.++ .|....++.++..+|+- ..+..+++++.....+.+++.+...
T Consensus 56 ~~~~~~ls~~p~~~~fl----~sal~-----------~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~ 120 (408)
T COG2081 56 EAPDEFLSRNPGNGHFL----KSALA-----------RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKE 120 (408)
T ss_pred ccHHHHHHhCCCcchHH----HHHHH-----------hCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHH
Confidence 45788888865444433 33322 23334477888888743 2356789999999999999999999
Q ss_pred HhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 144 LESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 144 l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
+++.|.+|+++++|.+|++++++..|.+.+|+++.+|.+|+|+=
T Consensus 121 ~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 121 LEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred HHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 99999999999999999999989999999998899999999984
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.79 E-value=7.7e-05 Score=73.76 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=52.3
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
-+..|+..++++||++|||.|.|.|.++..+++. ...+|+..|+.++.++.|+++++..|+.+
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~ 92 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD 92 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC
Confidence 3457899999999999999999999999999986 34699999999999999999999999864
No 168
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.77 E-value=3.3e-05 Score=75.04 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCH
Q 036521 538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSA 583 (602)
Q Consensus 538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~ 583 (602)
++..+.++.+ +++|.+|||||||+|.++..++++. +++|+|||+++
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 4445666666 5889999999999999999999873 36999999996
No 169
>PLN03075 nicotianamine synthase; Provisional
Probab=97.76 E-value=7.5e-05 Score=75.48 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=43.0
Q ss_pred HHccCCCCCeEEEEecCchHH-HHHHHh-c-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCC
Q 036521 544 EKARVSKGHGVLEIGCGWGTF-AIEVVR-Q-TGCNYTGITLSAEQLKYAEMKVNE-AGLQV 600 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~G~~-~~~la~-~-~g~~v~gid~S~~~l~~a~~~~~~-~gl~~ 600 (602)
..+...+.++|+|||||.|.+ ++.+++ . .+.+++|+|+|+++++.|++.++. .|+.+
T Consensus 117 ~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~ 177 (296)
T PLN03075 117 SQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSK 177 (296)
T ss_pred HHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccC
Confidence 333333668999999997744 444443 3 578999999999999999999964 77755
No 170
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.75 E-value=7.2e-05 Score=78.60 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=53.0
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
..+++.+++.++.+++ +|||+-||.|.+++.+|++ ..+|+||++++++++.|+++++.+|+++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n 245 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN 245 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence 5777888899988777 8999999999999999995 7899999999999999999999998864
No 171
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.74 E-value=4.3e-05 Score=71.78 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=45.7
Q ss_pred HHHHHHHHH-HccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 536 MRKHSLQIE-KARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 536 ~~~~~~l~~-~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
++|.+.++. .|+-..-.++||+|||.|.++..||.+ --+++++|+|+..++.|++|+..
T Consensus 28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC
Confidence 345555554 466556679999999999999999997 35899999999999999999864
No 172
>PLN02672 methionine S-methyltransferase
Probab=97.71 E-value=6.5e-05 Score=88.05 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=44.1
Q ss_pred CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+.+|||+|||+|.+++.++++ ..++|+|+|+|+++++.|+++++.++++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 568999999999999999987 3579999999999999999999987653
No 173
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.70 E-value=9.7e-05 Score=84.69 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=45.6
Q ss_pred CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+|.+|||+|||+|++++.+++. |+ +|++||+|+.+++.|+++++.+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~ 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLS 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999985 65 6999999999999999999999886
No 174
>PTZ00146 fibrillarin; Provisional
Probab=97.69 E-value=6.3e-05 Score=75.72 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~ 593 (602)
++.+.+++|++|||+|||+|.++.++|+.. ..+|++||+|++|++...+.+
T Consensus 125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 455678999999999999999999999974 358999999998664444443
No 175
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.65 E-value=0.00023 Score=64.62 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=46.1
Q ss_pred CCCCCeEEEEecCchHHHHHHHh-----ccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVR-----QTGCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~-----~~g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
..+..+|+|+|||-|.++..++. .++.+|+|||.+++.++.|+++.++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 35678999999999999999999 689999999999999999999998876
No 176
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.64 E-value=0.00041 Score=76.42 Aligned_cols=120 Identities=19% Similarity=0.163 Sum_probs=79.0
Q ss_pred CCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHHHH
Q 036521 65 ETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALL 144 (602)
Q Consensus 65 ~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l 144 (602)
.+..++++.. |..+..+..+.....-.+ .+|.+.. +.+. ++... .....+...+||++.++++|++.+
T Consensus 167 ~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~---a~~~--~~~~~-----~~~~G~~~p~GG~~al~~aL~~~~ 234 (487)
T COG1233 167 TSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP---ALYL--LLSHL-----GLSGGVFYPRGGMGALVDALAELA 234 (487)
T ss_pred hhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh---HHHH--HHHHh-----cccCCeeeeeCCHHHHHHHHHHHH
Confidence 4666777765 665555555443322122 3444432 2221 11111 112235566799999999999999
Q ss_pred hcCCCeEEeCCceeEEEecCC-eEEEEeCCCcEEecCEEEEecChHHHHhhcc
Q 036521 145 ESLGCQIKTGCEVCSVLQYDE-GRTEVRGDGFQGFYDGCIMAVHAPDALRILG 196 (602)
Q Consensus 145 ~~~g~~v~l~t~V~~i~~~~~-gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~ 196 (602)
+++|++|+++++|++|.-+++ ++++++.+|+.+.+|.||.+..+.....+..
T Consensus 235 ~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~ 287 (487)
T COG1233 235 REHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLG 287 (487)
T ss_pred HHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence 999999999999999997765 6788887776789999999997744444443
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.64 E-value=0.00013 Score=71.25 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
...+.+.++.+||+.|||.|.-+.+||++ |++|+|+|+|+..++.+.++
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQ 84 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHH
Confidence 34455567789999999999999999996 99999999999999998663
No 178
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.64 E-value=0.00022 Score=68.81 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.+-+.+..++...+ -.+||||||+.|.-++++|+. .+++|+.||++++..+.|++.++++|++++
T Consensus 32 ~~g~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~ 98 (205)
T PF01596_consen 32 ETGQLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDR 98 (205)
T ss_dssp HHHHHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHHHhcC---CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCc
Confidence 33445555555543 359999999999999999986 368999999999999999999999998754
No 179
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.63 E-value=7.2e-05 Score=71.45 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=34.3
Q ss_pred ccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHH
Q 036521 546 ARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQ 585 (602)
Q Consensus 546 l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~ 585 (602)
..+++|++|||||||+|+++..++++. .++|+|+|+|+.+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 356789999999999999999998863 4589999999964
No 180
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.62 E-value=7.3e-05 Score=72.90 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=43.9
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
..++.+..+++.+||+.|||.|.-+..||++ |++|+|||+|+..++.+.+.
T Consensus 28 ~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 28 EYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp HHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHH
Confidence 4455677888899999999999999999996 99999999999999998543
No 181
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=3.7e-05 Score=81.39 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=75.1
Q ss_pred hccchHHHHhhcCCCCccccc-ccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEc
Q 036521 502 YDLSNELFALFMDESMTYSCP-IFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGIT 580 (602)
Q Consensus 502 Yd~~~~~y~~~~~~~~~ys~~-~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid 580 (602)
++...-.++..++-++..|.+ +|...+... .-.+..+-+.+++..+..+||+.||+|.+++.+|+. -.+|+||+
T Consensus 338 ~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~a----evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvE 412 (534)
T KOG2187|consen 338 VGGDPYITESLLGLTFRISPGAFFQTNTSAA----EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVE 412 (534)
T ss_pred EccccEEEeecCCeEEEECCchhhccCcHHH----HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeee
Confidence 333345677777878888865 555443322 345566778889999999999999999999999985 67999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 036521 581 LSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 581 ~S~~~l~~a~~~~~~~gl~~ 600 (602)
+|++.++.|+++++.+|+++
T Consensus 413 i~~~aV~dA~~nA~~NgisN 432 (534)
T KOG2187|consen 413 ISPDAVEDAEKNAQINGISN 432 (534)
T ss_pred cChhhcchhhhcchhcCccc
Confidence 99999999999999999876
No 182
>PRK04457 spermidine synthase; Provisional
Probab=97.58 E-value=0.00017 Score=72.63 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=41.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
.+..+|||||||.|.++..+++. .+++|++||+++++++.|++....
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~ 112 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL 112 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC
Confidence 35679999999999999999887 578999999999999999998654
No 183
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.57 E-value=0.00017 Score=70.44 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=54.0
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
.++.|+++.++++++.|||||-|+|.++..+.+. |.+|+++++++.|++...++++.-.
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999995 9999999999999999999986544
No 184
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.57 E-value=0.00013 Score=69.98 Aligned_cols=49 Identities=35% Similarity=0.620 Sum_probs=43.7
Q ss_pred CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.-+||||||.|.+.+.+|++ ++..++|||++..-+..|.+++...++++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N 68 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN 68 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc
Confidence 38999999999999999988 78999999999999999999999998864
No 185
>PLN02476 O-methyltransferase
Probab=97.56 E-value=0.00023 Score=71.56 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=47.6
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
....++|||||||+|..++++|+- .+.+|+++|.+++.++.|+++++++|++++
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~ 171 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHK 171 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 345679999999999999999984 256899999999999999999999999853
No 186
>PHA03412 putative methyltransferase; Provisional
Probab=97.54 E-value=0.00011 Score=71.50 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=38.9
Q ss_pred CCeEEEEecCchHHHHHHHhc----cCCEEEEEcCCHHHHHHHHHHHH
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQ----TGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~----~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
+.+|||+|||+|.+++.++++ ...+|++||+++.+++.|+++..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 569999999999999999875 24699999999999999998763
No 187
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.54 E-value=0.00026 Score=68.42 Aligned_cols=57 Identities=28% Similarity=0.290 Sum_probs=50.2
Q ss_pred HccCCCCCeEEEEecCchHHHHHHHhc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 545 KARVSKGHGVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 545 ~l~l~~g~~vLDiGcG~G~~~~~la~~-~-g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.+.+....+|||||++.|.-++++|.. . ..++|+||+++++.+.|+++.+++|++++
T Consensus 54 L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~ 112 (219)
T COG4122 54 LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDR 112 (219)
T ss_pred HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcce
Confidence 334456779999999999999999987 3 56899999999999999999999999875
No 188
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00011 Score=64.69 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
++..|-+-.+--+|++++|+|||.|-+++..+--..-.|.|+||.++.++.+++++.+..++
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq 97 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ 97 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence 44455555565679999999999999996555422347999999999999999999887654
No 189
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.46 E-value=0.00031 Score=66.48 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCN---------YTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~---------v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
..++...+.++|+.|||--||+|++.+.+|.. .++. +.|.|+++++++.|+++++.+|+++
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 35677788899999999999999999998876 3444 8899999999999999999999864
No 190
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.39 E-value=0.00036 Score=71.00 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=45.7
Q ss_pred CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+-.++.|||+|||+|-++...|+....+|++||.|. +.+.|++.++.+++++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ 109 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLED 109 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccc
Confidence 557889999999999999999996335899999887 5599999999999986
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.38 E-value=0.00023 Score=73.71 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=34.3
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
++.+|||+|||-|+-..-.....-..++|+|||.+.++.|++|.++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 7889999999977755555553346899999999999999999943
No 192
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=0.00029 Score=66.03 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=40.4
Q ss_pred eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 553 ~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
.|||+|||+|..-.++--..+++||++|.++.|-++|.++++++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~ 122 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK 122 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc
Confidence 58999999999998887667999999999999999999998776
No 193
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.36 E-value=0.00041 Score=66.87 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=42.1
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE-EEEEcCCHHHHHHHHHHH
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~~ 593 (602)
.+..+++++++++++..+|||||.|.....+|-..+|+ ++||++.+.-.+.|++..
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELL 86 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHH
Confidence 44567889999999999999999999999988777886 999999999888887644
No 194
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.31 E-value=0.0011 Score=71.04 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHhcCccc-cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEec
Q 036521 102 SFSAFSILSFYRNHHLLQ-LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFY 179 (602)
Q Consensus 102 ~~p~~~~l~~~~~~g~~~-~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~a 179 (602)
.++..-++.+|..+|+.. ....+..|+...-.+++++.|.+.+.+.|.+|+++++|.+|...+++ +.|.+.+++.+.|
T Consensus 76 ~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a 155 (409)
T PF03486_consen 76 RFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEA 155 (409)
T ss_dssp HS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEE
T ss_pred cCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccC
Confidence 345555778888888643 34567899999999999999999999889999999999999998887 7888866668999
Q ss_pred CEEEEec
Q 036521 180 DGCIMAV 186 (602)
Q Consensus 180 d~VI~A~ 186 (602)
|+||+|+
T Consensus 156 ~~vILAt 162 (409)
T PF03486_consen 156 DAVILAT 162 (409)
T ss_dssp SEEEE--
T ss_pred CEEEEec
Confidence 9999997
No 195
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.31 E-value=0.0005 Score=62.31 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=41.7
Q ss_pred eEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 553 GVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 553 ~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+||||||+|..+..+++. .+++|+++|.++++++.++++++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 3899999999999999987 3458999999999999999999887764
No 196
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.31 E-value=0.00085 Score=67.36 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=39.6
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHH
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAE 590 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~ 590 (602)
+++...+.-=.|.+|||||||.|..+..++++ |+ .|+|||.+.--+.+.+
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~ 155 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFE 155 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHH
Confidence 45556664447899999999999999999997 65 7999999987665543
No 197
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.28 E-value=0.00038 Score=66.69 Aligned_cols=54 Identities=17% Similarity=0.370 Sum_probs=43.9
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
+++|+.|||+.||.|.+++.+|+. .+++|+++|++|..+++.+++++.++++++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~ 153 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENR 153 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTT
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCe
Confidence 678999999999999999999983 378999999999999999999999998763
No 198
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.28 E-value=0.00035 Score=73.04 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=82.1
Q ss_pred HHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc
Q 036521 493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT 572 (602)
Q Consensus 493 ~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~ 572 (602)
...+.|.++|+...++|...|+..++.+ -+ .+....++.-.+.-....-+..++++..++|+|||-|....+++...
T Consensus 56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~--~~-~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~ 132 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDLYERNWGQSFHFG--RI-PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK 132 (364)
T ss_pred ccchHHHHHhcccchhhhhhhccchhcc--Cc-cchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc
Confidence 6677889999999999999888885543 33 23344444433332333334467899999999999999999999977
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 573 GCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 573 g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
++.++|+|.++.++..+......++++++
T Consensus 133 ~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 133 KAGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 79999999999999999999988888764
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.28 E-value=0.00064 Score=72.04 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=45.4
Q ss_pred CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
++.+|||++||+|.+++.+|.+.+ .+|+++|++++.++.++++++.+++++
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~ 108 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN 108 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 357999999999999999988644 489999999999999999999988764
No 200
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.23 E-value=0.00063 Score=56.66 Aligned_cols=41 Identities=32% Similarity=0.621 Sum_probs=36.2
Q ss_pred eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521 553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 553 ~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~ 593 (602)
+|||+|||.|.++..+++..+.+++++|+++++++.+++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 41 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAA 41 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 58999999999999999855789999999999999998543
No 201
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.22 E-value=0.0016 Score=68.70 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCc-cccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC-cEEecC
Q 036521 103 FSAFSILSFYRNHHL-LQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG-FQGFYD 180 (602)
Q Consensus 103 ~p~~~~l~~~~~~g~-~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g-~~~~ad 180 (602)
|+..-++.||...|+ ......+++|+..+-.+++++.|...+.+.|.+|+++++|++| +++++.|.+.++ +.+.||
T Consensus 54 f~~~d~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~ 131 (376)
T TIGR03862 54 FDAVALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEAD 131 (376)
T ss_pred CCHHHHHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecC
Confidence 444557788989897 3445667899999999999999999999999999999999999 334577776433 468999
Q ss_pred EEEEecCh
Q 036521 181 GCIMAVHA 188 (602)
Q Consensus 181 ~VI~A~p~ 188 (602)
+||+||=.
T Consensus 132 ~vIlAtGG 139 (376)
T TIGR03862 132 AVVLALGG 139 (376)
T ss_pred EEEEcCCC
Confidence 99999944
No 202
>PRK00811 spermidine synthase; Provisional
Probab=97.20 E-value=0.0012 Score=67.29 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=40.7
Q ss_pred CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~ 595 (602)
..++||+||||+|..+..++++.+ .+|++||+++++++.|++....
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~ 122 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE 122 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH
Confidence 456999999999999999998644 5899999999999999998764
No 203
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.00065 Score=69.49 Aligned_cols=60 Identities=25% Similarity=0.367 Sum_probs=54.1
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+.+++...+++|+.|||==||||++.+.+.- .|++|+|+|++..|++-|+.+.+..|+++
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~ 246 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIED 246 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCc
Confidence 3567778899999999999999999999887 59999999999999999999999888654
No 204
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.16 E-value=0.00044 Score=66.55 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCCCC-eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521 548 VSKGH-GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 548 l~~g~-~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~ 593 (602)
..++. .++|+|||+|..++.+|+. --+|+|+|+|++||+.|++.-
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCC
Confidence 34454 7999999999888888885 568999999999999987653
No 205
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.12 E-value=0.0013 Score=61.98 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=40.2
Q ss_pred cCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 547 RVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 547 ~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
...++.+|||+|||+|..++.+|+. .+++|+..|.++ .++..+.+++.++
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence 4567889999999999999999996 578999999999 9999999998765
No 206
>PLN02366 spermidine synthase
Probab=97.10 E-value=0.0015 Score=67.08 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=41.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~ 595 (602)
++.++||+||||.|+.+.+++++.+ .+|+.||+++++++.|++....
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~ 137 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD 137 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh
Confidence 4567999999999999999998744 5899999999999999998754
No 207
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.04 E-value=0.0014 Score=65.72 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=45.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
-.|..|||+|||.|.++..+|+....+|.+|+.|+ |.++|++.++.+.+.+|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~r 227 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADR 227 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccce
Confidence 45778999999999999999986345899999875 99999999999988775
No 208
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.02 E-value=0.00078 Score=64.76 Aligned_cols=45 Identities=18% Similarity=0.445 Sum_probs=41.0
Q ss_pred CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~ 594 (602)
.+..+|||||-.|.+++.+|+..|+ .|.|+||.+..+..|+++++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 4568999999999999999999776 69999999999999999875
No 209
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.99 E-value=0.0021 Score=63.80 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=51.1
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
+.+..+++..+ -++|||||++.|.-++++|+. .+.+|+++|.+++..+.|++..+++|+.++
T Consensus 69 ~lL~~l~~~~~---ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~ 132 (247)
T PLN02589 69 QFLNMLLKLIN---AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHK 132 (247)
T ss_pred HHHHHHHHHhC---CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCc
Confidence 44445554433 458999999999999999975 367999999999999999999999998764
No 210
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.99 E-value=0.0028 Score=64.20 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
...+|||||||+|.++..++++. ..+|+++|+++++++.|++....
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHh
Confidence 34599999999999999988864 46899999999999999998754
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.91 E-value=0.0011 Score=68.62 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=48.9
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--------cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--------TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--------~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
....+.+++.+...++.+|||-+||+|++...+.+. ...+++|+|+++.++..|+-+..-.|.
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 345557777788888999999999999999888762 467999999999999999887755543
No 212
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0013 Score=64.22 Aligned_cols=48 Identities=35% Similarity=0.560 Sum_probs=45.2
Q ss_pred CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
-.+||||||.|.+.+.+|++ +...++||++...-+..|.+++.+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~ 98 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK 98 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC
Confidence 47999999999999999998 7789999999999999999999999983
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.88 E-value=0.002 Score=64.96 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=52.4
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
.+..+.|++.+++.+++.|||||+|.|.++..+++. +.+|++|++++...+..+++..
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh
Confidence 456678999999999999999999999999999996 6999999999999999988754
No 214
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.84 E-value=0.0035 Score=66.09 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=46.6
Q ss_pred CCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
|++|||+-|=||++++++|.. |+ +||+||+|...++.|+++++-+|++.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~ 267 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDG 267 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999994 88 99999999999999999999999864
No 215
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.80 E-value=0.0027 Score=60.21 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=42.3
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+|.+|||+-||+|.+++.+..+...+|+.||.|++.++..+++++..++++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~ 92 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLED 92 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GG
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCc
Confidence 688999999999999999998733599999999999999999999988764
No 216
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0036 Score=59.07 Aligned_cols=59 Identities=25% Similarity=0.441 Sum_probs=49.2
Q ss_pred HHHHHHHHcc--CCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 538 KHSLQIEKAR--VSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 538 ~~~~l~~~l~--l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
+...+++.|. ++||.+.||+|+|+|.++..++.- .|..++||+.=++.++++++++.+-
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 4446677777 899999999999999999888865 3455689999999999999998653
No 217
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.79 E-value=0.002 Score=64.49 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=58.8
Q ss_pred hHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHh
Q 036521 491 LAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR 570 (602)
Q Consensus 491 ~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~ 570 (602)
.....+.|++||....+.-..- ...|.=+| |.... +.+..++-.+-.++++.+||+|||-|+-.+-.-+
T Consensus 69 ~~~~~~~Va~HYN~~~e~g~e~----Rq~S~Ii~------lRnfN-NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~k 137 (389)
T KOG1975|consen 69 NESKSSEVAEHYNERTEVGREK----RQRSPIIF------LRNFN-NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDK 137 (389)
T ss_pred ccchhHHHHHHHHHHHHHhHhh----hccCceee------hhhhh-HHHHHHHHHHHhccccccceeccCCcccHhHhhh
Confidence 3444778999997654433211 11222222 11111 1122222233357899999999999998877665
Q ss_pred ccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521 571 QTG-CNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 571 ~~g-~~v~gid~S~~~l~~a~~~~~~ 595 (602)
. | ..++||||++..+++|++|.++
T Consensus 138 A-gI~~~igiDIAevSI~qa~~RYrd 162 (389)
T KOG1975|consen 138 A-GIGEYIGIDIAEVSINQARKRYRD 162 (389)
T ss_pred h-cccceEeeehhhccHHHHHHHHHH
Confidence 3 4 4899999999999999999875
No 218
>PRK01581 speE spermidine synthase; Validated
Probab=96.74 E-value=0.0052 Score=63.80 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~ 591 (602)
...+||+||||.|..+..+.+.. ..+|+.||+++++++.|++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 34599999999999999888863 3699999999999999996
No 219
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.71 E-value=0.0039 Score=68.78 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=46.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
..+..+||||||.|.++..+|++ +...++|||++..-+..|.+++.+.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N 398 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN 398 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe
Confidence 34668999999999999999998 67899999999999999999999988864
No 220
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.69 E-value=0.0055 Score=62.06 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccCCC-----CCeEEEEecCchHH-HHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc-CCCCC
Q 036521 536 MRKHSLQIEKARVSK-----GHGVLEIGCGWGTF-AIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA-GLQVT 601 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~-----g~~vLDiGcG~G~~-~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~-gl~~~ 601 (602)
.+.++++.+.|.... .-++||||||.-.+ .+..++.+|++++|.|+++..++.|+++++.+ +|+++
T Consensus 83 ~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~ 155 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESR 155 (299)
T ss_dssp HHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTT
T ss_pred HHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccc
Confidence 345555555554322 45899999998766 44445558999999999999999999999999 88764
No 221
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.64 E-value=0.0032 Score=64.51 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCH
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSA 583 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~ 583 (602)
+.+|+++|||||++|+.+..+.++ |++|++||.++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh
Confidence 468999999999999999999996 88999999664
No 222
>PRK03612 spermidine synthase; Provisional
Probab=96.61 E-value=0.0037 Score=69.26 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=39.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHH
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~ 592 (602)
++.++|||||||.|..+..++++.+ .+|++||+++++++.|+++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC
Confidence 4567999999999999999998644 6999999999999999983
No 223
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.014 Score=54.02 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=41.9
Q ss_pred CCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGL 598 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl 598 (602)
-.-+||||||+|..+-.+++. .++...++||+++.++-..+.++.++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~ 93 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV 93 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC
Confidence 457999999999999999987 456788999999999999998877664
No 224
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.53 E-value=0.0022 Score=60.80 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHHHHHHHcc-CCCC--CeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHH
Q 036521 537 RKHSLQIEKAR-VSKG--HGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAE 584 (602)
Q Consensus 537 ~~~~~l~~~l~-l~~g--~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~ 584 (602)
-|+..+.++.+ ++++ .+|||+||+.|+++..+.++. .++|+|||+.+.
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 46778888888 6664 899999999999999999974 489999999865
No 225
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.50 E-value=0.009 Score=60.90 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=52.5
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
+++.+++.+.+++|..++|.-||.|+.+..++++. .++|+|+|.+++.++.|+++.+..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~ 67 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF 67 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence 45678899999999999999999999999999873 589999999999999999987653
No 226
>PRK10742 putative methyltransferase; Provisional
Probab=96.43 E-value=0.0087 Score=58.80 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHHHccCCCCC--eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 540 SLQIEKARVSKGH--GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 540 ~~l~~~l~l~~g~--~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
+.+++.+++++|. +|||+-+|.|..++.+|.. ||+|++|+-|+......++..+.+
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHh
Confidence 5788999999998 9999999999999999996 999999999999999999888774
No 227
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.011 Score=57.96 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=55.4
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+..|+..|++.||.+|||-|+|.|.++.++++. +-.+++..|+-+.-.+.|++..++.|+.+
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~ 157 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGD 157 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCc
Confidence 346888999999999999999999999999987 34699999999999999999999998764
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.35 E-value=0.011 Score=68.08 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=50.3
Q ss_pred HHHHHccC-CCCCeEEEEecCchHHHHHHHhc-------------------------------------------cCCEE
Q 036521 541 LQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQ-------------------------------------------TGCNY 576 (602)
Q Consensus 541 ~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~-------------------------------------------~g~~v 576 (602)
.++...+. +++..++|-+||.|.+.+.+|.. ...++
T Consensus 180 a~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i 259 (702)
T PRK11783 180 AILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKF 259 (702)
T ss_pred HHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceE
Confidence 45566665 67889999999999999998762 02379
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 577 TGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 577 ~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+|+|+++++++.|+++++.+|+.+
T Consensus 260 ~G~Did~~av~~A~~N~~~~g~~~ 283 (702)
T PRK11783 260 YGSDIDPRVIQAARKNARRAGVAE 283 (702)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999875
No 229
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.34 E-value=0.049 Score=60.22 Aligned_cols=124 Identities=14% Similarity=0.031 Sum_probs=72.3
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHh-cCccccCCCCcEEEecCCcHhHHHH
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRN-HHLLQLFGRPQWLTVRSRSHSYVNK 139 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~-~g~~~~~~~~~~~~~~gG~~~l~~~ 139 (602)
.+++.|+.||+.++.+...|. . +.+++++..+.-.+.....++.+|+.. +++-.. .+..++.-+-..+++.+
T Consensus 159 ~Ld~~tI~d~f~~~Ff~t~Fw-~----~w~t~FaF~~whSA~E~rry~~rf~~~~~~l~~~--s~l~ft~ynqyeSLV~P 231 (576)
T PRK13977 159 KLDDKTIEDWFSPEFFETNFW-Y----YWRTMFAFEKWHSALEMRRYMHRFIHHIGGLPDL--SGLKFTKYNQYESLVLP 231 (576)
T ss_pred HhCCcCHHHHHhhcCchhHHH-H----HHHHHHCCchhhHHHHHHHHHHHHHHhhccCCcc--ccccCCCCCchhHHHHH
Confidence 458899999999976655433 3 444445555433222233344444332 121111 11112222234689999
Q ss_pred HHHHHhcCCCeEEeCCceeEEEec-CC--e-E-EEEe-CCC--c---EEecCEEEEecChHHH
Q 036521 140 VIALLESLGCQIKTGCEVCSVLQY-DE--G-R-TEVR-GDG--F---QGFYDGCIMAVHAPDA 191 (602)
Q Consensus 140 la~~l~~~g~~v~l~t~V~~i~~~-~~--g-v-~v~~-~~g--~---~~~ad~VI~A~p~~~a 191 (602)
|.+.|+++|++|+++++|++|..+ ++ + | .|.. .+| + ....|.||+|+=.-..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 999999999999999999999875 22 2 2 2222 222 2 2368999999744333
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.33 E-value=0.0043 Score=58.92 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=46.2
Q ss_pred CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
-..|+|.-||.|+.++..|.+ ++.|++||++|.-++-|+++++-.|+.+|
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~r 144 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDR 144 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCce
Confidence 458999999999999999985 99999999999999999999999998874
No 231
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.27 E-value=0.022 Score=53.60 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=53.1
Q ss_pred HHHHHHHHccC--CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 538 KHSLQIEKARV--SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 538 ~~~~l~~~l~l--~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
..+.+...+.. -+|.++||+-+|+|.+++.++.+...+|+.||.+.+.+...+++++..+++.+
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~ 94 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGE 94 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccc
Confidence 33455555543 36889999999999999999998556999999999999999999999886543
No 232
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.26 E-value=0.013 Score=63.37 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=41.0
Q ss_pred CCeEEEEecCchHHHHHHHhcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQT-----GCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~-----g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
+..|||||||+|-++..+++.. ..+|++|+-|+......+++++..+++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~ 242 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDK 242 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCe
Confidence 5689999999999987776531 25999999999999888999888888654
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.26 E-value=0.026 Score=58.15 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=57.7
Q ss_pred hhhc-cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-----cC
Q 036521 500 YHYD-LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-----TG 573 (602)
Q Consensus 500 ~~Yd-~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-----~g 573 (602)
-+|| .+.++|+....- +.||...++ .+--.+....|++.+ .++..|+|+|||.|.-+..+.+. ..
T Consensus 34 ~~YD~~Gs~LFe~It~l-----pEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~ 104 (319)
T TIGR03439 34 LLYDDEGLKLFEEITYS-----PEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKS 104 (319)
T ss_pred hhhcchHHHHHHHHHcC-----CccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCC
Confidence 3575 678888887632 345532111 111123334455554 47779999999999986655443 24
Q ss_pred CEEEEEcCCHHHHHHHHHHHH
Q 036521 574 CNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 574 ~~v~gid~S~~~l~~a~~~~~ 594 (602)
++.++||+|.++|+.+.++++
T Consensus 105 ~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 105 VDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred ceEEEEECCHHHHHHHHHhhh
Confidence 789999999999999999987
No 234
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.25 E-value=0.016 Score=58.63 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=43.2
Q ss_pred CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.|++|||+-|=+|+++++++. .|+ +|++||.|...++.|+++++.+|++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 588999999999999999888 476 79999999999999999999999864
No 235
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.013 Score=61.08 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=52.4
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-----------------------------------------EEEE
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-----------------------------------------NYTG 578 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-----------------------------------------~v~g 578 (602)
..|+...+-+++..++|=-||.|.+++.+|.. +. .++|
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 35677778888889999999999999999985 32 3779
Q ss_pred EcCCHHHHHHHHHHHHHcCCCC
Q 036521 579 ITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 579 id~S~~~l~~a~~~~~~~gl~~ 600 (602)
+|+++.+++.|+.+++++|+.+
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d 281 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGD 281 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999986
No 236
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.21 E-value=0.032 Score=58.61 Aligned_cols=82 Identities=16% Similarity=0.027 Sum_probs=66.9
Q ss_pred CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEec-ChHHHHhhccCCCC
Q 036521 123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAV-HAPDALRILGNQST 200 (602)
Q Consensus 123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~-p~~~a~~ll~~~~~ 200 (602)
.+.|.-+.|||.++..++++.+++.|++|.+++.|.+|.-+++. +-|...+|+.+.++.||.-+ |-++..+|++....
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L 332 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL 332 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence 34577789999999999999999999999999999999887643 46778899888887777755 55566699987677
Q ss_pred HHHH
Q 036521 201 FEEK 204 (602)
Q Consensus 201 ~~~~ 204 (602)
|++.
T Consensus 333 Peef 336 (561)
T KOG4254|consen 333 PEEF 336 (561)
T ss_pred Cchh
Confidence 7664
No 237
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.21 E-value=0.0093 Score=61.60 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=50.3
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.+++. .++|.+|||+=+|-|.+++.+|++ |+. |+++|++|..+++.+++++.++++++
T Consensus 181 Rva~~--v~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~ 239 (341)
T COG2520 181 RVAEL--VKEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGR 239 (341)
T ss_pred HHHhh--hcCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccce
Confidence 34444 346999999999999999999996 665 99999999999999999999998764
No 238
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.20 E-value=0.014 Score=63.56 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=49.2
Q ss_pred cCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 547 RVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 547 ~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
++++|++|||++||.|+-+.++|... ...|+++|+|+.-++..++++++.|+.+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n 165 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN 165 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe
Confidence 77899999999999999999999873 3589999999999999999999999864
No 239
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.19 E-value=0.01 Score=56.60 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=43.9
Q ss_pred CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+.+|||||||+|..+.++|++ +...-.-.|++++.+.-.+..+.+.++++
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N 76 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN 76 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc
Confidence 335999999999999999998 67888899999999988898888888764
No 240
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.16 E-value=0.0062 Score=63.23 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=44.6
Q ss_pred eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 553 ~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.|||||.|+|.++..+++..+-.||+++.=..|.+.|++-..+.|.+++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sdk 117 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDK 117 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccc
Confidence 6999999999999999886445899999999999999999999998874
No 241
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.90 E-value=0.051 Score=57.55 Aligned_cols=235 Identities=12% Similarity=0.074 Sum_probs=129.4
Q ss_pred CCHHHHH---HhcCCCHHHHHHHHHHHHhhhcCCChhhHH-----hhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhH
Q 036521 65 ETLGQFI---KSRGYSELFQKAYLVPICGSIWSCPSEGIM-----SFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSY 136 (602)
Q Consensus 65 ~s~~~~l---~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-----~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l 136 (602)
.++.+|. .+ .+++...+.++.|-..=+|+++|.++. .+|... . ...+.. .+.-|.++ ++|...+
T Consensus 129 ~~~~e~~d~~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~--~--~d~~yf--~d~~q~~P-~~Gyt~~ 200 (377)
T TIGR00031 129 EELQEIADPDIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVL--S--EDSSYF--PDRYQGLP-KGGYTKL 200 (377)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEe--c--CCCCcc--cccccccc-cccHHHH
Confidence 3455554 66 489999999999999999999998862 223221 0 000000 12223444 5668889
Q ss_pred HHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCcccccee
Q 036521 137 VNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSD 216 (602)
Q Consensus 137 ~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~ 216 (602)
.++|++.- +.+|+||+.+..+...++.|.+. ++ .+. ++||.+.|.+..-. ..++.++|....
T Consensus 201 ~~~ml~~~---~i~v~l~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f~-----------~~~g~L~yrsl~ 262 (377)
T TIGR00031 201 FEKMLDHP---LIDVKLNCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLFG-----------YRFGALQYRSLK 262 (377)
T ss_pred HHHHHhcC---CCEEEeCCccceeeccccceeec--cc-ccc-CcEEEecCchHHHh-----------hccCcccceeEE
Confidence 99998774 56999999888877544435442 22 233 88999877765443 456778887664
Q ss_pred EEEe-cCCCCCCCCCCcccccccccCCCCCeEEEEeccccccCCCCCCCCCeEEEcCCCCCCcc-eEEEEEccCCCCChh
Q 036521 217 IFLH-RDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNN-TLLKWSTGHPVPSVA 294 (602)
Q Consensus 217 ~vl~-~d~~l~p~~~~~w~s~n~~~~~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~p~~~p~~-~l~r~~~~~p~~~~~ 294 (602)
.-.. .+... ...++-.|++ ..-+...++.+ .+++.......+. .. .-|.. ....+.+.-|+++..
T Consensus 263 f~~e~~~~~~----~q~~~~vnyp-~~~~~tRI~e~----k~f~~~~~~~t~i---~~-E~~~~~~~~~~~pyYpi~~~~ 329 (377)
T TIGR00031 263 FEWERHEFKN----FQGYAVVNFP-LNVPITRIVEY----KHLTYVGSKQTIV---SK-EYPGEWKVGDPEPYYPVNDNK 329 (377)
T ss_pred EEEEEecccc----CCCCeEEEcC-CCCCcceEEee----ecCCCCCCCCeEE---Ee-ecchhhcCCCceeeeeccCHH
Confidence 4322 23221 1112223443 11112222222 1111100001111 00 00110 001113344666666
Q ss_pred HHHHHHHHHhhc-CCCCeEEeccccC--CCCChhHHHHHHHHHHHhc
Q 036521 295 ASKASLELDHIQ-GKRGIWFCEAYQG--YGFHEDGLKAGMIAAHGVL 338 (602)
Q Consensus 295 ~~~~~~~l~~lq-g~~gl~~aG~~~g--~g~~E~av~SG~~aA~~ll 338 (602)
..+..++...+. ...+++++|=+-. +=-|++||.+|+.+|++++
T Consensus 330 ~~~~~~~y~~la~~~~~v~~~GRlg~y~Y~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 330 NMALFKKYLELASREDNLILLGRLAEYQYYDMDQAILAALYKAEQLL 376 (377)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeEeEeecHHHHHHHHHHHHHHhh
Confidence 666666665553 4579999998643 2228999999999999864
No 242
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.82 E-value=0.12 Score=55.68 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=78.7
Q ss_pred HHHHHhhHHHHHHHHhhc-CCCC-CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhH----HHHHHHH
Q 036521 39 REIMKFKDDVLCYLEELE-NNPD-IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSA----FSILSFY 112 (602)
Q Consensus 39 ~~i~rf~~~~~~~l~~~~-~~~~-~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~----~~~l~~~ 112 (602)
+.+++|.+.+..+..... .... .....|+.+++++.++++...+.+...+ +++.. ++-..-|+ ..+..|+
T Consensus 138 R~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~--~~~~~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 138 RRLMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLD--DSYLTEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSS--SGGGGSBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccC--cccccccHHHHHHHHHHHH
Confidence 456677776665532211 1111 2346899999999999988776543322 22222 22112222 2233444
Q ss_pred HhcCccccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEE-EeCCCcEEecCEEEEe
Q 036521 113 RNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTE-VRGDGFQGFYDGCIMA 185 (602)
Q Consensus 113 ~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v-~~~~g~~~~ad~VI~A 185 (602)
..-|-. .++|.+++.= |.++|++..+....=.|+...|+++|.+|..+++|..+ +..+|+++.+++||..
T Consensus 214 ~Slgry--G~sPfLyP~Y-G~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 214 SSLGRY--GKSPFLYPLY-GLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHCCC--SSSSEEEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred HHHhcc--CCCCEEEEcc-CCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 433311 2445665554 68899987776554459999999999999886655432 2347878999999954
No 243
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.69 E-value=0.065 Score=57.54 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCcc-ccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEE
Q 036521 105 AFSILSFYRNHHLL-QLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCI 183 (602)
Q Consensus 105 ~~~~l~~~~~~g~~-~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI 183 (602)
...+++++...|+. .....++.++..+....+.+.+.+.+.+.|.+|+++++|++|.++++++.|.+. ++.+.+|.||
T Consensus 75 ~~d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~-~~~i~ad~VI 153 (400)
T TIGR00275 75 NKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETS-GGEYEADKVI 153 (400)
T ss_pred HHHHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEEC-CcEEEcCEEE
Confidence 33455666666642 222344566666677889999999998889999999999999887777877764 4578999999
Q ss_pred EecChHH
Q 036521 184 MAVHAPD 190 (602)
Q Consensus 184 ~A~p~~~ 190 (602)
+|+....
T Consensus 154 lAtG~~s 160 (400)
T TIGR00275 154 LATGGLS 160 (400)
T ss_pred ECCCCcc
Confidence 9997644
No 244
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.64 E-value=0.023 Score=54.43 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=38.2
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
..++.+.+++.. +.+|+++++|++|.+.+++|.|++.+++++.||+||+|+=
T Consensus 84 v~~yl~~~~~~~---~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG 135 (203)
T PF13738_consen 84 VLDYLQEYAERF---GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATG 135 (203)
T ss_dssp HHHHHHHHHHHT---TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---
T ss_pred HHHHHHHHHhhc---CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeee
Confidence 334555555555 7789999999999999999999999887889999999985
No 245
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.55 E-value=0.026 Score=58.91 Aligned_cols=69 Identities=22% Similarity=0.156 Sum_probs=54.4
Q ss_pred EEEecCC---cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecChHHHHhhcc
Q 036521 126 WLTVRSR---SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAPDALRILG 196 (602)
Q Consensus 126 ~~~~~gG---~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~~a~~ll~ 196 (602)
.+...+| ...+.+.|.+.+.+.|.+|+.+++|++|..++++|+ |.+.+|+ +.+|+||+|+-+.. ..++.
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~ 208 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLP 208 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeee
Confidence 4455556 788999999999888999999999999999999998 9999996 99999999985543 33444
No 246
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.51 E-value=0.035 Score=55.08 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=42.3
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~ 591 (602)
..+.+.....+..+|||||+|.|.++..++++ ++.+++..|+ |+.++.+++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~ 141 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE 141 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence 45566677777789999999999999999988 7899999998 888888877
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.37 E-value=0.062 Score=54.47 Aligned_cols=61 Identities=23% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
.+.+..+-..+.--.-.+|||+|||.|..+..+.+.. -.++++||.|+.|++.++..++..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 3444444444433233599999999998665544432 248999999999999999877543
No 248
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.034 Score=49.46 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=52.7
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
+.++.++..+.-.+..+.+|+|+|-|.+...+|+. | ...+|+++++-.+.++|-++-.+|+..+
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~ 123 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKS 123 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccc
Confidence 34456677776666558999999999999998885 6 6899999999999999999988887643
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.19 E-value=0.083 Score=53.81 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=52.5
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.....+..++|++|||++++.|+-+.++|+.. ...|++.|+++.-++..++++++.|+..
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~ 137 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN 137 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce
Confidence 44566788999999999999999999999984 3799999999999999999999998764
No 250
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.14 E-value=0.019 Score=53.89 Aligned_cols=46 Identities=15% Similarity=0.433 Sum_probs=41.7
Q ss_pred CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
-.+.|||||.|++.+.++.. +.--+.|++|-..--++.++|+++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 46899999999999999998 67789999999999999999998765
No 251
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.089 Score=55.38 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhcc---CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT---GCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~---g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
.....++.++|++|||+..+.|+=+.++|+.. |..|+++|+|+.=++..++++++.|+.+
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN 209 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 34567889999999999999999999999872 4678999999999999999999999874
No 252
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.83 E-value=0.095 Score=55.40 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=43.8
Q ss_pred CCeEEEEecCchHHHHHHHhc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~-~g-~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+-+|||+.||+|..++.++.+ .| .+|+++|+|++.++.++++++.++++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~ 95 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE 95 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 358999999999999999987 24 48999999999999999999988765
No 253
>PRK11524 putative methyltransferase; Provisional
Probab=94.70 E-value=0.1 Score=53.29 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
...++.+++..- .+|+.|||--||+|..++.+.+ .|-+.+|+|++++-++.|++|+..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345556665553 6899999999999999987655 699999999999999999999753
No 254
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=94.65 E-value=0.15 Score=48.34 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=42.9
Q ss_pred eEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 553 GVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 553 ~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+++|||+|.|..++-+|=- +..+|+-+|-+..-+.+.+.-+.+.||++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n 99 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN 99 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC
Confidence 8999999999999888765 57899999999999999999999999874
No 255
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.57 E-value=0.12 Score=47.68 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCeE-EeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 136 YVNKVIALLESLGCQI-KTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 136 l~~~la~~l~~~g~~v-~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
..+.+.+.+ ..+.+| +...+|+.|.+.++++.|.+.+|..+.||+||+||
T Consensus 103 ~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~ 153 (156)
T PF13454_consen 103 RFDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLAT 153 (156)
T ss_pred HHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECC
Confidence 345555555 224454 56789999999999999999999889999999997
No 256
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.53 E-value=0.07 Score=59.45 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=40.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcc---------CCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQT---------GCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~---------g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
.+.+|||.|||+|.+...++++. ..+++|+|+++..++.|+.++...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 34699999999999999888752 1578999999999999999887665
No 257
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.53 E-value=0.05 Score=52.79 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=43.6
Q ss_pred HHHHHHHHHccCC-CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHH
Q 036521 537 RKHSLQIEKARVS-KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYA 589 (602)
Q Consensus 537 ~~~~~l~~~l~l~-~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a 589 (602)
-|+...++...+. +|..+||||+-||+++..+.++...+|++||....|+..-
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k 118 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK 118 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh
Confidence 3566677777775 5789999999999999999997345899999999888654
No 258
>PRK13699 putative methylase; Provisional
Probab=94.45 E-value=0.14 Score=50.29 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=46.9
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
.++.+++.. -.+|+.|||-=||+|..++.+.+ .|-+.+|+|++++-.+.|.+|+++.
T Consensus 152 l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESF-THPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 444555543 36899999999999999987665 6999999999999999999998764
No 259
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.41 E-value=0.089 Score=56.03 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=48.7
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
...+...|++.+.+ |.+|+.+++|++|+.++++|.|.+.+|..+.+|+||+|+-+.
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcc
Confidence 36788899888887 999999999999999888899988888668999999998654
No 260
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.41 E-value=0.12 Score=49.90 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=44.9
Q ss_pred CCeEEEEecCchHHHHHHH-hccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVV-RQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la-~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+.+++|||+|.|..++-+| -..+.+||=||-...=+.+.++-.++.||++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n 118 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN 118 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC
Confidence 5799999999999999988 3367789999999999999999999999874
No 261
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.26 E-value=0.24 Score=53.11 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=51.2
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcE-EecCEEEEec--ChHHHHhhcc
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQ-GFYDGCIMAV--HAPDALRILG 196 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~-~~ad~VI~A~--p~~~a~~ll~ 196 (602)
...+..++++.+.++|.+|++|++|+.|++.++|+ .+.+.+|++ ++|+.||.+. -++..+++..
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 45678899999999999999999999999999864 556777765 8999999997 3444555554
No 262
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.07 E-value=0.063 Score=57.57 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHccC--CCC--CeEEEEecCchHHHHHHHhccCCEEEEEc---CCHHHHHHHHHH
Q 036521 532 KVAQMRKHSLQIEKARV--SKG--HGVLEIGCGWGTFAIEVVRQTGCNYTGIT---LSAEQLKYAEMK 592 (602)
Q Consensus 532 ~~aq~~~~~~l~~~l~l--~~g--~~vLDiGcG~G~~~~~la~~~g~~v~gid---~S~~~l~~a~~~ 592 (602)
.......++.|.+.+.+ ..| ..+||||||.|.++.++.++ +..+..+. ..+.|+++|-+|
T Consensus 95 ~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 95 PHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc
Confidence 33344556666666655 334 36999999999999999996 65444332 334577777665
No 263
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.03 E-value=0.053 Score=52.54 Aligned_cols=42 Identities=17% Similarity=0.394 Sum_probs=36.0
Q ss_pred eEEEEecCchHHHHHHHhc-c--CCEEEEEcCCHHHHHHHHHHHH
Q 036521 553 GVLEIGCGWGTFAIEVVRQ-T--GCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 553 ~vLDiGcG~G~~~~~la~~-~--g~~v~gid~S~~~l~~a~~~~~ 594 (602)
+|||||||.|....-+.+- . +.+|.+.|.|+..++..+++..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~ 118 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG 118 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc
Confidence 7999999999999887765 3 3789999999999999887653
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.00 E-value=0.12 Score=50.70 Aligned_cols=51 Identities=20% Similarity=0.483 Sum_probs=38.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+-.+|+|||||-=-++...... .++.++|+||+..+++..+.-....|..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP 155 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 34569999999999999876554 5789999999999999999988776654
No 265
>PLN02823 spermine synthase
Probab=94.00 E-value=0.23 Score=51.76 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=38.8
Q ss_pred CCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~ 594 (602)
..+||.||+|.|..+.++.+.. ..+|+.||+++++++.|++...
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~ 148 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLT 148 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcc
Confidence 4689999999999999988863 4689999999999999998864
No 266
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.96 E-value=0.15 Score=53.90 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=58.3
Q ss_pred hccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcC
Q 036521 502 YDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITL 581 (602)
Q Consensus 502 Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~ 581 (602)
||+.+..|..+.+ ...|+ -.|+++. --.+.|++.|+++||-|.+|.....-++.+. -.+|++||+
T Consensus 1 ~~~~~~~~~~~f~-~lvY~-~~WEDp~------------vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDl 65 (380)
T PF11899_consen 1 YGLLERLFTQFFR-GLVYA-QCWEDPR------------VDMEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDL 65 (380)
T ss_pred CchHHHHHHHhcc-ceeec-cccCCcH------------HHHHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeC
Confidence 6777777777665 44553 2354432 2246788999999999999988888887774 589999999
Q ss_pred CHHHHHHHHHHHH
Q 036521 582 SAEQLKYAEMKVN 594 (602)
Q Consensus 582 S~~~l~~a~~~~~ 594 (602)
||.|+...+=+..
T Consensus 66 Np~Q~aLleLKlA 78 (380)
T PF11899_consen 66 NPAQNALLELKLA 78 (380)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998876653
No 267
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.83 E-value=0.036 Score=57.77 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=47.9
Q ss_pred CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
.++|+.|.|+-||-|-+++-++++ +|+|++-|++++++++.+.+++...+..+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~ 299 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPS 299 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchh
Confidence 578999999999999999999996 89999999999999999999887766543
No 268
>PHA01634 hypothetical protein
Probab=93.82 E-value=0.24 Score=43.14 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=47.8
Q ss_pred HHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
+-...+++ .+.+|+|||.+-|..+++++-+ |+ +|++++.++...+..+++++...+-|
T Consensus 20 ~~Y~~idv-k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~D 78 (156)
T PHA01634 20 HAYGMLNV-YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICD 78 (156)
T ss_pred HHhhheee-cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeee
Confidence 33456665 4679999999999999999997 55 89999999999999999887765433
No 269
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.77 E-value=0.15 Score=48.79 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCCeEEEEecCchH----HHHHHHhc----c--CCEEEEEcCCHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGT----FAIEVVRQ----T--GCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 550 ~g~~vLDiGcG~G~----~~~~la~~----~--g~~v~gid~S~~~l~~a~~ 591 (602)
+--+|+-+||++|. +++.+.+. . .++|+|+|+|+..++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 44699999999996 44444451 1 3699999999999999986
No 270
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.76 E-value=0.1 Score=49.92 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred HHHHHHHHHccC-CCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCH
Q 036521 537 RKHSLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSA 583 (602)
Q Consensus 537 ~~~~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~ 583 (602)
.|+.+|.++..+ ++|++|+|+||-.|+.+..++++.+ .+|+|||+-|
T Consensus 31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 455667777664 7789999999999999999999844 3599999976
No 271
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.73 E-value=0.041 Score=51.57 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=50.2
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+++.+.-..-.|++|||+|+|.|-.++..|+.....|+..|+.+......+-+++.+|.+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~ 128 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS 128 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce
Confidence 355666566679999999999999999999863358999999999999999999888865
No 272
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.73 E-value=0.17 Score=48.65 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=50.9
Q ss_pred HHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
+..+.+.. +.+.++.||||-.|.+.+++.++. --.++..|+++.-++.|.+++++.++.++
T Consensus 7 L~~va~~V--~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~ 68 (226)
T COG2384 7 LTTVANLV--KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSER 68 (226)
T ss_pred HHHHHHHH--HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcce
Confidence 34445443 467779999999999999999973 34899999999999999999999999765
No 273
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.64 E-value=0.11 Score=50.81 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHHHHHccCCCCC--eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521 540 SLQIEKARVSKGH--GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 540 ~~l~~~l~l~~g~--~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~ 593 (602)
+.+++.+++++|. +|||.-||.|.-++.+|. .||+||+++-||-.....++-.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL 117 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGL 117 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHH
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHH
Confidence 3678888999885 899999999999999997 5999999999998877666443
No 274
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=93.62 E-value=0.34 Score=48.60 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=44.7
Q ss_pred CCeEEEEecCchHHHHHHHhcc-C--CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQT-G--CNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~-g--~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
--+||||.||.|...+.+.++. . .+|.-.|.|+..++.+++.+++.||++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i 189 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDI 189 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 3589999999999998887763 3 5899999999999999999999999863
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.51 E-value=0.16 Score=52.46 Aligned_cols=52 Identities=31% Similarity=0.440 Sum_probs=44.8
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
+++.+++||++|+-+|+| -|.+++.+|+..|++|+++|.|++-++.|++.-.
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA 211 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA 211 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC
Confidence 456789999999999998 5677888888779999999999999999988643
No 276
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=93.34 E-value=0.52 Score=43.27 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=61.0
Q ss_pred hhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEE
Q 036521 500 YHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYT 577 (602)
Q Consensus 500 ~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~ 577 (602)
.-+|..-.|++.|++.-.+-. ++-.. .+. ..+.+....+.+.|.-|||+|.|+|-++..+.++ ....++
T Consensus 7 ~~f~~e~~F~k~wi~~PrtVG-aI~Ps--Ss~------lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~ 77 (194)
T COG3963 7 RKFDEEISFFKGWIDNPRTVG-AILPS--SSI------LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLT 77 (194)
T ss_pred hhHHHHHHHHHHHhcCCceee-eecCC--cHH------HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceE
Confidence 345555678888887653321 12211 111 1124566777888999999999999999999886 235799
Q ss_pred EEcCCHHHHHHHHHHHHHc
Q 036521 578 GITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 578 gid~S~~~l~~a~~~~~~~ 596 (602)
.|+.|++-.....++....
T Consensus 78 ~iE~~~dF~~~L~~~~p~~ 96 (194)
T COG3963 78 AIEYSPDFVCHLNQLYPGV 96 (194)
T ss_pred EEEeCHHHHHHHHHhCCCc
Confidence 9999999998888775443
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.25 E-value=0.21 Score=48.56 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=40.8
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
...++.+++.. -.+|+.|||.=||.|..+..+.+ .|-+.+|+|++++-.+.|++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence 34555666554 47899999999999999987655 69999999999999999875
No 278
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.10 E-value=0.19 Score=50.91 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=44.1
Q ss_pred HHHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 541 LQIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+.+++.+++.|.+||-+|+|. |-.+...|+..|+ +|+.+|++++-++.|++
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 568888999999999999995 6666666776776 89999999999999988
No 279
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.92 E-value=0.38 Score=49.65 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=41.8
Q ss_pred HHHHHHHHHHccCCCC-CeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKG-HGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g-~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
.+.+-.++..+..-.| +.|.|+|.|-|.++..++-++|..|.+||-|....+.|++
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3344444444433333 6799999999999999999999999999999665555554
No 280
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.72 E-value=0.31 Score=51.68 Aligned_cols=57 Identities=23% Similarity=0.121 Sum_probs=49.0
Q ss_pred cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEec
Q 036521 130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~ 186 (602)
...+..+++.|.+.|.++|.+|+++|.|..|...++.+ .|.+.+|+++.+|+||+|+
T Consensus 169 TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 169 TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEcc
Confidence 34566788999999999999999999999999887754 5567788889999999997
No 281
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.56 E-value=0.15 Score=47.52 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCC
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLS 582 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S 582 (602)
++|+++|||+||-.|..+.-+.++ +...|.||||-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 578999999999999999988777 45689999983
No 282
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.54 E-value=0.23 Score=49.10 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=34.9
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
...++||||.|-|..+..++.. -.+|++.++|+.|....++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK 134 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh
Confidence 3468999999999999999985 5689999999999766554
No 283
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.41 E-value=0.21 Score=42.34 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=27.1
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLS 582 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S 582 (602)
+-....|||||.|-+.-.|.+. |.+-.|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 3457999999999999888885 8899999974
No 284
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=92.30 E-value=0.46 Score=49.23 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=47.6
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEecChHH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
...+...+++.+.++|.+++.+++|++|..++++| .|.+.+| ++.||+||+|+-+..
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 46788888888888899999999999999887776 4666667 799999999986644
No 285
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.20 E-value=0.41 Score=51.17 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=48.5
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
...+.++|.+.+.+.|.+++++++|.++...++++.|.+.+| ++.+|+||+|+.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~ 203 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLM 203 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcc
Confidence 467888999888888999999999999998888888888777 69999999998654
No 286
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.15 E-value=0.18 Score=51.54 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
+++.+++.|.++++...+|.-.|.|+.+..+.++ .+++|+|+|-++++++.|+++.+
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 3457788888999999999999999999999987 56999999999999999988765
No 287
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.13 E-value=0.41 Score=50.74 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=45.4
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
..+.+.+.+.+.++|.+++.+++|++|.++++++.|.+.+| ++.+|+||+|+-+.
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 45667777777667999999999999998888888877766 78999999999653
No 288
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.06 E-value=0.28 Score=43.64 Aligned_cols=39 Identities=41% Similarity=0.676 Sum_probs=30.6
Q ss_pred EEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHH
Q 036521 554 VLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 554 vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~ 593 (602)
+||+|||.|... .+++.. +..++|+|+++.+++.++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999976 334332 258999999999999966554
No 289
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=91.86 E-value=0.14 Score=49.36 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=41.8
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+...++.|.+|||.+.|-|..++.++++ |+ +|..|+.++.-++.|.-
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~l 175 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKL 175 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeecc
Confidence 45667788999999999999999999997 88 99999999988877653
No 290
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=91.80 E-value=0.41 Score=52.40 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=44.7
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
...++..|++.+.+.|.+|+.+++|++|+. ++++.|.+.+| ++.||+||+|+-+.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 345778888777778999999999999985 45677888777 68999999998654
No 291
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=91.57 E-value=0.49 Score=50.88 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=46.4
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecChHH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
...+...+++.+.++|.+|+.+++|++|+.+++++. |.+.++ ++.+|+||+|+-+..
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 456778888888888999999999999998877764 556655 789999999997643
No 292
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.55 E-value=0.7 Score=46.64 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=53.1
Q ss_pred HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
.++.+++.|.++++...+|.--|.|+.+..+.++.+ ++++|+|-++..++.|+++....+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 456788999999999999999999999999998843 689999999999999999986643
No 293
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=91.37 E-value=0.52 Score=51.97 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHhc----CC--CeEEeCCceeEEEec-CCeEEEEeCCCcEEecCEEEEecChH
Q 036521 134 HSYVNKVIALLES----LG--CQIKTGCEVCSVLQY-DEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 134 ~~l~~~la~~l~~----~g--~~v~l~t~V~~i~~~-~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
..+...+++.+.+ +| .+|+++++|++|++. ++.|.|.+.+| ++.||+||+|+=+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGY 272 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChh
Confidence 4677888888776 67 578999999999987 44578888878 69999999998543
No 294
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.26 E-value=0.69 Score=44.75 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=45.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~ 601 (602)
-..+++||||.=+|.-++..|.. .+.+|+++|++++..+.+.+..+.+|+.++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~K 126 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHK 126 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccce
Confidence 34679999998888888877776 588999999999999999999999998754
No 295
>PRK06847 hypothetical protein; Provisional
Probab=91.21 E-value=0.62 Score=49.29 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
.+.+.|.+.+.+.|.+|+++++|++++.+++++.|.+.+|+++.+|.||.|.-..
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 4566777776666889999999999998888888888888889999999998443
No 296
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=91.03 E-value=0.59 Score=49.43 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
..+...+.+.+.+.|.+++.+++|+++.++++++.|.+++| ++.+|+||+|+-+.
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence 34556666666667999999999999999888888888877 78999999999664
No 297
>PRK09897 hypothetical protein; Provisional
Probab=90.67 E-value=0.68 Score=51.46 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHhcCC--CeEEeCCceeEEEecCCeEEEEeCC-CcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLG--CQIKTGCEVCSVLQYDEGRTEVRGD-GFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g--~~v~l~t~V~~i~~~~~gv~v~~~~-g~~~~ad~VI~A~ 186 (602)
+...+.+.+.+.+.| .+|+.+++|++|++.++++.|++.+ |..+.||+||+|+
T Consensus 107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAt 162 (534)
T PRK09897 107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIAT 162 (534)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECC
Confidence 445566666665555 5788999999999988899988754 4578999999999
No 298
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=90.53 E-value=1.1 Score=44.72 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=42.9
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
.+.+.++.-.+. +..++||-||-|.|+.+..+.+.. -.+|+.|||+++.++.|++-...
T Consensus 63 ~e~l~h~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~ 122 (246)
T PF01564_consen 63 HEMLVHPPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPE 122 (246)
T ss_dssp HHHHHHHHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHH
T ss_pred HHHHhhhHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchh
Confidence 334334333333 345799999999999999999864 36999999999999999987543
No 299
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=90.40 E-value=0.48 Score=47.30 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=52.2
Q ss_pred hHHHHhhcCCCCccccc---------ccCCCCccHHHHHHHHHHHHHHHccCCCC-CeEEEEecC--chHHHHHHHhc--
Q 036521 506 NELFALFMDESMTYSCP---------IFKDEDEDLKVAQMRKHSLQIEKARVSKG-HGVLEIGCG--WGTFAIEVVRQ-- 571 (602)
Q Consensus 506 ~~~y~~~~~~~~~ys~~---------~~~~~~~~l~~aq~~~~~~l~~~l~l~~g-~~vLDiGcG--~G~~~~~la~~-- 571 (602)
...|++|++...+|-.. .+ ........+.++.+.+..+.+--..| ...|||||| +-...-..|++
T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~-P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~ 93 (267)
T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAA-PEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA 93 (267)
T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC
Confidence 45677777766554210 00 01123444556666666666654435 579999999 44556667765
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521 572 TGCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 572 ~g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
.+++|+-||..|--+.+++.....
T Consensus 94 P~aRVVYVD~DPvv~ah~ralL~~ 117 (267)
T PF04672_consen 94 PDARVVYVDNDPVVLAHARALLAD 117 (267)
T ss_dssp TT-EEEEEESSHHHHHCCHHHHTT
T ss_pred CCceEEEECCCchHHHHHHhhhcC
Confidence 689999999999999999887644
No 300
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=90.30 E-value=0.86 Score=48.62 Aligned_cols=55 Identities=22% Similarity=0.111 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
..+.+.|.+.+.+.|.+++.+++|++++.+++++.|+..+|+++.+|.||.|.=.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~ 167 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGA 167 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCC
Confidence 4567778777777789999999999999988899888888878999999999833
No 301
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=90.30 E-value=0.52 Score=45.33 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
....++|||||-|.+..++-.+.--+++-+|-|-.|++.++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc
Confidence 345799999999999999988632478999999999999875
No 302
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=90.26 E-value=1.2 Score=44.44 Aligned_cols=76 Identities=20% Similarity=0.426 Sum_probs=55.5
Q ss_pred chHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHH
Q 036521 505 SNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAE 584 (602)
Q Consensus 505 ~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~ 584 (602)
+..+|...++. ..|+ -+|+++..+++ .+.+..|.+|.-||+|.-.+.-++++. -++|..||+++.
T Consensus 32 serlf~vlFsg-LvYp-qiwEDp~Vdme------------am~~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~a 96 (414)
T COG5379 32 SERLFGVLFSG-LVYP-QIWEDPSVDME------------AMQLGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPA 96 (414)
T ss_pred hHHHHHHHhcc-cccc-cccCCccccHH------------HHhcCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHH
Confidence 44556554433 3453 45666555443 345668999999999999899999985 789999999999
Q ss_pred HHHHHHHHHHH
Q 036521 585 QLKYAEMKVNE 595 (602)
Q Consensus 585 ~l~~a~~~~~~ 595 (602)
+++..+-++..
T Consensus 97 hiAln~lklaA 107 (414)
T COG5379 97 HIALNRLKLAA 107 (414)
T ss_pred HHHHHHHHHHH
Confidence 99988776643
No 303
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.18 E-value=0.64 Score=49.58 Aligned_cols=49 Identities=33% Similarity=0.436 Sum_probs=43.2
Q ss_pred HHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~ 592 (602)
+...+.+|.+||.+|||. |..++.+|+..|+ +|+++|.++++++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 456778999999999998 9999999998887 699999999999998875
No 304
>PRK06116 glutathione reductase; Validated
Probab=90.06 E-value=0.83 Score=49.83 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=45.0
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~ 186 (602)
..+.+.+.+.|.++|.+++++++|.+|+.++++ +.|.+.+|+++.+|.||+|+
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~ 261 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAI 261 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEee
Confidence 456778888888889999999999999987666 77777778789999999996
No 305
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=90.06 E-value=0.29 Score=45.55 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=41.1
Q ss_pred CeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 552 HGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 552 ~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
+.+-|+|.|+|-++..+|+. .-+|++|+.+|.-.+.|.++++-.|+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~ 80 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV 80 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc
Confidence 58999999999999988884 779999999999999999997655553
No 306
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.99 E-value=0.91 Score=48.53 Aligned_cols=63 Identities=22% Similarity=0.166 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH-HHHhhcc
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP-DALRILG 196 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~-~a~~ll~ 196 (602)
..+.+.|.+.+.+.|.+|+.+++|++++++++++.|+..+|+++.+|.||.|.-.. ...+.+.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 45777888887777899999999999999888998888888789999999997433 3444443
No 307
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=89.95 E-value=0.98 Score=47.88 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHhc-CCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH-HHhhcc
Q 036521 134 HSYVNKVIALLES-LGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD-ALRILG 196 (602)
Q Consensus 134 ~~l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~-a~~ll~ 196 (602)
..+.+.|.+.+.+ .|.+++.+++|++|.+++++|+|+..+|+++.||.||.|..... ..+.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 4677888888766 38899999999999998889999888887899999999996543 444444
No 308
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.78 E-value=0.9 Score=48.79 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=44.7
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC-----cEEecCEEEEecChH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG-----FQGFYDGCIMAVHAP 189 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g-----~~~~ad~VI~A~p~~ 189 (602)
...+...+.+.+.++|.+|+.+++|++|+.++++|.+.+.++ .++.+|+||+|+=+.
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 345667788888888999999999999998888877654322 368999999999554
No 309
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.63 E-value=0.77 Score=52.80 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=47.8
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
...+..++.+.+.+ |.+|+.+++|++|.+.+++|.|.+.+|..+.+|+||+|+-+.
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~ 462 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHD 462 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCC
Confidence 35788889888877 899999999999998888899888888667899999998654
No 310
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.61 E-value=1 Score=48.35 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec-ChHHHHhhcc
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV-HAPDALRILG 196 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~-p~~~a~~ll~ 196 (602)
..+.+.|.+.+.+.|.+|+.+++|+++++++++|.|+..+|+++.+|.||.|. ......+++.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 35667777777767889999999999999988999988888789999999998 3344555554
No 311
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=89.33 E-value=1.1 Score=48.07 Aligned_cols=58 Identities=14% Similarity=-0.036 Sum_probs=46.6
Q ss_pred CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCC--cEEecCEEEEecChH
Q 036521 131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDG--FQGFYDGCIMAVHAP 189 (602)
Q Consensus 131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g--~~~~ad~VI~A~p~~ 189 (602)
.|+ .+.++|.+.+.++|++++.+++|.++..++++++ |.+.++ ..+.||+||+|+=+.
T Consensus 261 ~G~-RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 261 LGI-RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred cHH-HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 355 4778899999999999999999999998888775 444554 378999999997553
No 312
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=89.24 E-value=1.3 Score=44.92 Aligned_cols=59 Identities=20% Similarity=0.104 Sum_probs=45.7
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
.+++.++.-.+-..+ .+||-||-|-|+.++.+.++. -.+++.|||.++.++.|++....
T Consensus 63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~ 122 (282)
T COG0421 63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPE 122 (282)
T ss_pred HHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccC
Confidence 344444443344445 599999999999999999973 36999999999999999987644
No 313
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.04 E-value=0.83 Score=36.61 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=36.7
Q ss_pred cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC
Q 036521 130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG 174 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g 174 (602)
..-...+.+.+.+.+.++|.+|++++.|.+|..++++++|+..+|
T Consensus 36 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 36 PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 334456777888888888999999999999999998877777665
No 314
>PLN02507 glutathione reductase
Probab=89.03 E-value=1.2 Score=49.26 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.++++++.|.+++..++++.|...+|+++.+|.||+|+.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G 297 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATG 297 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeec
Confidence 456677777888889999999999999987778888777787899999999974
No 315
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=88.94 E-value=1.2 Score=48.69 Aligned_cols=54 Identities=20% Similarity=0.074 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
.++.+.+.+.+.++|.+|+++++|++++.+++++.++..+|+++.+|.||+|+.
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 269 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANG 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeec
Confidence 467778888888889999999999999987778877777777899999999964
No 316
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=88.71 E-value=1.1 Score=43.01 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=47.2
Q ss_pred cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC---CEEEEEc
Q 036521 504 LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG---CNYTGIT 580 (602)
Q Consensus 504 ~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g---~~v~gid 580 (602)
..+.-|+.|-....-||..=|..=.-.| | .+..++.+..+.-+..-.+.|-.||.|.+.--+.--++ ..|.|-|
T Consensus 8 ~~~~~y~DfAsG~VL~sApG~p~FPVRL--A-sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSD 84 (246)
T PF11599_consen 8 TERRDYEDFASGRVLYSAPGFPAFPVRL--A-SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASD 84 (246)
T ss_dssp -S----CCCSTTTSS--BTTB----HHH--H-HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEE
T ss_pred cccCChhhhcCCeEEecCCCCCCccHHH--H-HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhccc
Confidence 3344455555555555544332211111 1 22333444444434446899999999999876654333 4799999
Q ss_pred CCHHHHHHHHHHHH
Q 036521 581 LSAEQLKYAEMKVN 594 (602)
Q Consensus 581 ~S~~~l~~a~~~~~ 594 (602)
+++++++.|+++..
T Consensus 85 Id~~aL~lA~kNL~ 98 (246)
T PF11599_consen 85 IDEDALELARKNLS 98 (246)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh
Confidence 99999999999873
No 317
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=88.62 E-value=0.93 Score=48.79 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.|.+.|.+.++ +..|+++++|++|++++++|.|+..+|+++.+|.||.|.=.
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence 56777877775 45789999999999988899998888888999999999733
No 318
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.55 E-value=1.2 Score=46.13 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=40.8
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
+...++++++||..||| .|..++.+|+..|++|+.++.|+++.+.+++
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 34457889999999987 4888899999889999999999999988854
No 319
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=88.50 E-value=1.4 Score=46.83 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
.+.+.+.+.+.+.|.+++++++|.++..+++++.|...+|+++.+|.||+|+-
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcC
Confidence 45566777777789999999999999987777888888888899999999974
No 320
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.47 E-value=0.89 Score=50.03 Aligned_cols=46 Identities=26% Similarity=0.204 Sum_probs=39.4
Q ss_pred ccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 546 ARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 546 l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
++..++++|+-+|||. |..++..|+..|++|+++|.+++-++++++
T Consensus 160 aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 160 AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4567899999999995 666777788789999999999999998876
No 321
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=88.40 E-value=1.3 Score=44.92 Aligned_cols=53 Identities=25% Similarity=0.165 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.+.+.+.+.+.+.+.++++ +.|++|...++++.|.+.+|+++.+|+||+|+=.
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC
Confidence 5667777777767889999 8999999988888888877778999999999944
No 322
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=88.39 E-value=1.3 Score=48.70 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHhc-CCCeEEeCCceeEEEec-CCeEEEE---eCCCc--EEecCEEEEecCh
Q 036521 134 HSYVNKVIALLES-LGCQIKTGCEVCSVLQY-DEGRTEV---RGDGF--QGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~-~g~~v~l~t~V~~i~~~-~~gv~v~---~~~g~--~~~ad~VI~A~p~ 188 (602)
..+.+++++.+.+ .|.+|+++++|+.|+++ +++|+|. +.+|+ ++.||.||+|+=+
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGa 245 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGG 245 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCc
Confidence 3567888887743 48999999999999988 6678775 34452 5899999999844
No 323
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=88.25 E-value=1.9 Score=46.36 Aligned_cols=82 Identities=16% Similarity=0.155 Sum_probs=59.6
Q ss_pred cHhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCe-EEEEeC---CC--cEEecCEEEEecChHHHHhhccCCCCHHHHh
Q 036521 133 SHSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEG-RTEVRG---DG--FQGFYDGCIMAVHAPDALRILGNQSTFEEKR 205 (602)
Q Consensus 133 ~~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~g-v~v~~~---~g--~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~ 205 (602)
...|.+.|.+.+.+. |.+|++++.|+.|++.++| |.|... +| .++.|+.|++-.=. .++.|+.. ..-.|..
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG-~aL~LLqk-sgi~e~~ 257 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGG-GALPLLQK-SGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCch-HhHHHHHH-cCChhhc
Confidence 457888888888766 7899999999999999887 888652 22 36899999998744 36666653 3333556
Q ss_pred hccCcccccee
Q 036521 206 LLGAFQYVYSD 216 (602)
Q Consensus 206 ~l~~~~y~~~~ 216 (602)
-++.||-+..+
T Consensus 258 gyggfPVsG~f 268 (488)
T PF06039_consen 258 GYGGFPVSGQF 268 (488)
T ss_pred ccCCCcccceE
Confidence 67777766554
No 324
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=88.20 E-value=1.2 Score=49.20 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=43.9
Q ss_pred cHhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCe-EEEEe---CCCc--EEecCEEEEecChH
Q 036521 133 SHSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEG-RTEVR---GDGF--QGFYDGCIMAVHAP 189 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~g-v~v~~---~~g~--~~~ad~VI~A~p~~ 189 (602)
...+.+++++.+.+.| .+|+++++|++|++++++ |.|++ .+|+ ++.|++||+|+-..
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG 245 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc
Confidence 3467888888887777 599999999999987665 76653 2353 58999999998553
No 325
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.13 E-value=0.63 Score=44.93 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=38.8
Q ss_pred CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCC
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEA-GLQ 599 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~-gl~ 599 (602)
++-++||||.|.--+--.+-.+ ||.+.+|.|+++..++.|+..+..+ +++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~ 129 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE 129 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh
Confidence 4568999998865444334333 8999999999999999999998776 554
No 326
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.01 E-value=1.5 Score=47.79 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.++.+.+.+.|.++|.++++++.|.+|..+++++.|...+|+++.+|.||+|+..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 4566677777888899999999999999877777777777778999999999753
No 327
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=87.81 E-value=1.4 Score=44.17 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=35.3
Q ss_pred CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAE 590 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~ 590 (602)
...+||-=|||-|.++..+|++ |..|.|.+.|--|+--.+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASN 95 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHH
Confidence 3568999999999999999996 999999999999975443
No 328
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=87.79 E-value=1.5 Score=46.45 Aligned_cols=54 Identities=11% Similarity=-0.057 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
..+.+.|.+.+.+.| .+|+.+++|+++..+++++.|++.+|+++.+|.||.|.-
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence 357777888776666 899999999999998888988888888899999998863
No 329
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=87.76 E-value=1.6 Score=48.09 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=44.1
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eEEEEe---CCCc--EEecCEEEEecCh
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GRTEVR---GDGF--QGFYDGCIMAVHA 188 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv~v~~---~~g~--~~~ad~VI~A~p~ 188 (602)
...+..++++.+.++|.+|+++++|++|+++++ +|.|++ .+|+ ++.||.||+|+-.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~ 238 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGG 238 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCc
Confidence 457888998888888999999999999998654 576643 2342 5899999999854
No 330
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.60 E-value=1.4 Score=46.22 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=40.7
Q ss_pred HHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
.+..+++|++||-+|||. |..++.+|+..|++|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 346788999999999975 777788888889999999999999888854
No 331
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=87.40 E-value=0.91 Score=46.18 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=32.4
Q ss_pred CeEEEEecCchHH----HHHHHhcc-----CCEEEEEcCCHHHHHHHHHH
Q 036521 552 HGVLEIGCGWGTF----AIEVVRQT-----GCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 552 ~~vLDiGcG~G~~----~~~la~~~-----g~~v~gid~S~~~l~~a~~~ 592 (602)
-+|+..||.+|.= |+.+.+.. ..+|+|+|||+..++.|++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 6999999999964 44444421 36899999999999999874
No 332
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=87.36 E-value=1.5 Score=48.02 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHhcCCCe--EEeCCceeEEEecCCeEEEEeCCC--c--EEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQ--IKTGCEVCSVLQYDEGRTEVRGDG--F--QGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~--v~l~t~V~~i~~~~~gv~v~~~~g--~--~~~ad~VI~A~p~ 188 (602)
+++.+.|.+.....+.+ |+++++|++|++.+++|.|++.++ . +..||+||+|+=.
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence 44556665555444655 999999999999888898876532 2 3579999999853
No 333
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.33 E-value=1.5 Score=47.99 Aligned_cols=55 Identities=29% Similarity=0.218 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC---cEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG---FQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g---~~~~ad~VI~A~p~ 188 (602)
..+.+.+.+.|.++|.+++++++|.+|..+++++.|...+| +.+.+|.||+|+..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~ 270 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR 270 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence 45667778888888999999999999998777787766544 46889999999743
No 334
>PRK06834 hypothetical protein; Provisional
Probab=87.20 E-value=1.7 Score=47.95 Aligned_cols=52 Identities=21% Similarity=0.089 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
.+-+.|.+.+.+.|.+|+.+++|+++++++++|.|+..+|+++.+|.||.|.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgAD 152 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCD 152 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEec
Confidence 4555666666666889999999999999989998887777789999999997
No 335
>PRK00536 speE spermidine synthase; Provisional
Probab=86.96 E-value=2.4 Score=42.45 Aligned_cols=42 Identities=10% Similarity=-0.137 Sum_probs=38.0
Q ss_pred CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~ 593 (602)
-++||=||-|-|+.++.+.++ ..+|+-|||+++.++.+++-.
T Consensus 73 pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~l 114 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFF 114 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHC
Confidence 369999999999999999996 459999999999999999944
No 336
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=86.94 E-value=1.8 Score=47.46 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.+++++++|.+|+.+++++.|...+|+.+.+|.||+|+.
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G 271 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVG 271 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeec
Confidence 456677788888889999999999999887778877777787889999999864
No 337
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=86.75 E-value=1.8 Score=47.22 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC--cEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG--FQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g--~~~~ad~VI~A~p~ 188 (602)
..+.+.+.+.+.++|.++++++.|.+|+.+++++.+...+| +++.+|.||+|+..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence 45677778888888999999999999998877887776666 46899999999743
No 338
>PRK07236 hypothetical protein; Provisional
Probab=86.74 E-value=1.6 Score=46.51 Aligned_cols=62 Identities=15% Similarity=0.011 Sum_probs=48.0
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEe--cChHHHHhhcc
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMA--VHAPDALRILG 196 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A--~p~~~a~~ll~ 196 (602)
...+.+.|.+.++ +.+|+++++|+++++++++|+|+..+|+++.+|.||.| +.+.....+++
T Consensus 99 ~~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~ 162 (386)
T PRK07236 99 WNVLYRALRAAFP--AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLP 162 (386)
T ss_pred HHHHHHHHHHhCC--CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCC
Confidence 4456677777774 46799999999999998899998888888999999999 45544444433
No 339
>PRK07588 hypothetical protein; Provisional
Probab=86.60 E-value=1.8 Score=46.12 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
.+-+.|.+.+.. +.+|+++++|++|++++++|.|++.+|+++.+|.||-|-=
T Consensus 104 ~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 104 DLAAAIYTAIDG-QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred HHHHHHHHhhhc-CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence 455555555542 5799999999999999899999888898889998888863
No 340
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=86.47 E-value=2 Score=43.36 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=30.9
Q ss_pred CeEEEEecCchHH-HHHHHhcc--CCEEEEEcCCHHHHHHHHHHHH-HcCCCC
Q 036521 552 HGVLEIGCGWGTF-AIEVVRQT--GCNYTGITLSAEQLKYAEMKVN-EAGLQV 600 (602)
Q Consensus 552 ~~vLDiGcG~G~~-~~~la~~~--g~~v~gid~S~~~l~~a~~~~~-~~gl~~ 600 (602)
.+|+=||||.=-+ ++.+++++ ++.|+++|++++.++.|++-++ ..||+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 4999999995544 46677664 5789999999999999999888 455543
No 341
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=5.5 Score=41.42 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc---------CCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521 531 LKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT---------GCNYTGITLSAEQLKYAEMKVNEAG 597 (602)
Q Consensus 531 l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~---------g~~v~gid~S~~~l~~a~~~~~~~g 597 (602)
+-+.-...+-.+.+.++.+..-+++|||.|.|.++..+.+.. .+++.-|++|++-.+.=+++.+...
T Consensus 58 FGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 58 FGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 444444455556666666556689999999999998877642 5799999999998888777766543
No 342
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=86.29 E-value=2.1 Score=46.40 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=43.6
Q ss_pred CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecC-Ce-E-EEEeC-CCcEEecCEEEEecC
Q 036521 131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EG-R-TEVRG-DGFQGFYDGCIMAVH 187 (602)
Q Consensus 131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~g-v-~v~~~-~g~~~~ad~VI~A~p 187 (602)
++...+++.|.+.+.+.|.+|+++++|++|..++ ++ + .|... ++..+.++.||+|+=
T Consensus 120 ~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 120 GGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 4556788999888888899999999999998763 33 3 23332 334688999999985
No 343
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=86.27 E-value=1.8 Score=47.02 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc--EEecCEEEEec
Q 036521 131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF--QGFYDGCIMAV 186 (602)
Q Consensus 131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~--~~~ad~VI~A~ 186 (602)
+--.++.+.+.+.|.+.|.+++++++|++++..++++.+..++|+ ++.+|.|++|+
T Consensus 211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAi 268 (454)
T COG1249 211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268 (454)
T ss_pred cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEcc
Confidence 334567788888887767899999999999998888888777665 68899999996
No 344
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.99 E-value=2 Score=44.74 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=39.6
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
...++++|++||-.||| .|.++..+|+..|++|++++.+++-++.|++.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 45678899999999986 45556777777899999999999988877663
No 345
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=85.87 E-value=2.6 Score=42.43 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=42.2
Q ss_pred CccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchH----HHHHHHhcc------CCEEEEEcCCHHHHHHHHH
Q 036521 528 DEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGT----FAIEVVRQT------GCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 528 ~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~----~~~~la~~~------g~~v~gid~S~~~l~~a~~ 591 (602)
...++.-....+..++..-.. .--+|+-+||++|. +|+.+.+.. .++|+|+|||...|+.|++
T Consensus 75 ~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 75 PEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred cHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 344544444444444433322 34699999999995 455555542 4799999999999999986
No 346
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.86 E-value=2.1 Score=47.63 Aligned_cols=56 Identities=9% Similarity=-0.069 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
..+.+.+.+.+.+.|.+++++++|.+|...++++.|.+.+|+.+.+|+||+|+-+.
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 45677888888777899999999999988777788888788789999999999653
No 347
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.83 E-value=0.56 Score=46.88 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=32.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHH
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQL 586 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l 586 (602)
-.|++|||+|||.|-..+.+..+..+.|...|.|.+-+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 36899999999999999999986338899999988766
No 348
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=85.78 E-value=2 Score=47.40 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=64.7
Q ss_pred hhccchHHHHhhcCCC---Cccc-ccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc----
Q 036521 501 HYDLSNELFALFMDES---MTYS-CPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT---- 572 (602)
Q Consensus 501 ~Yd~~~~~y~~~~~~~---~~ys-~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~---- 572 (602)
.+|...+.|++++... ..=+ ..+|.+ +...+.|.+.+.+++..+|+|-.||+|++...+++..
T Consensus 142 ~~d~~G~~yE~ll~~fa~~~~k~~GEfyTP---------~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~ 212 (489)
T COG0286 142 DRDLFGDAYEYLLRKFAEAEGKEAGEFYTP---------REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ 212 (489)
T ss_pred cccchhHHHHHHHHHHHHhcCCCCCccCCh---------HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc
Confidence 3466667777665431 1111 223332 4455677778777888899999999999998877652
Q ss_pred -CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 573 -GCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 573 -g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
.+..+|.++++..+..|+.+.--+|++
T Consensus 213 ~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 213 DEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred cceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 267999999999999999998777765
No 349
>PRK07190 hypothetical protein; Provisional
Probab=85.72 E-value=2.3 Score=46.87 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
+-+.|.+.+.+.|.+|+.+++|++++++++++.++..+|+++.|+.||.|.=...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 3344555566668999999999999999999888777787899999999984433
No 350
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.68 E-value=2.2 Score=45.12 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=40.8
Q ss_pred HHHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+.+...+++|++||-+||| -|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus 177 ~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 177 VLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3455678899999999987 36667778887888 79999999999888855
No 351
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=85.55 E-value=8.7 Score=41.79 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHh-cCccccCCCCcEEEecCCcHhHHHH
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRN-HHLLQLFGRPQWLTVRSRSHSYVNK 139 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~-~g~~~~~~~~~~~~~~gG~~~l~~~ 139 (602)
.+++.++.||+...-|...|. -+.+++++..+-..+.---.|+.+|+.. +++-.+ .+..++.-+-..+++.+
T Consensus 140 ~L~~~~I~d~F~~~FF~SnFW-----~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l--~~l~~T~YNQyeSii~P 212 (500)
T PF06100_consen 140 DLGDKRIEDWFSESFFESNFW-----YMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDL--SGLDRTKYNQYESIILP 212 (500)
T ss_pred HhCcccHHHhcchhhhcCchh-----HhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCc--cccccCccccHHHHHHH
Confidence 346789999987755544443 2556666666533222223455555543 222111 12233444556789999
Q ss_pred HHHHHhcCCCeEEeCCceeEEEec
Q 036521 140 VIALLESLGCQIKTGCEVCSVLQY 163 (602)
Q Consensus 140 la~~l~~~g~~v~l~t~V~~i~~~ 163 (602)
|...|+++|.++++++.|+.|.-+
T Consensus 213 l~~~L~~~GV~F~~~t~V~di~~~ 236 (500)
T PF06100_consen 213 LIRYLKSQGVDFRFNTKVTDIDFD 236 (500)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEE
Confidence 999999999999999999999864
No 352
>PF02036 SCP2: SCP-2 sterol transfer family; InterPro: IPR003033 This domain is involved in binding sterols, and is found in proteins such as SCP2. This domain has a 3-layer alpha/beta/alpha fold, composed of alpha/beta(3)/(crossover)/beta/(alpha)/beta. The human sterol carrier protein 2 (SCP2) is a basic protein that is believed to participate in the intracellular transport of cholesterol and various other lipids []. The Unc-24 protein of Caenorhabditis elegans contains a domain similar to part of two ion channel regulators (the erythrocyte integral membrane protein stomatin and the C. elegans neuronal protein MEC-2) juxtaposed to a domain similar to nonspecific lipid transfer protein (nsLTP; also called sterol carrier protein 2) [].; GO: 0032934 sterol binding; PDB: 2KSH_A 2KSI_A 1PZ4_A 1C44_A 2CX7_B 1WFR_A 1QND_A 2C0L_B 1IKT_A 3BKR_A ....
Probab=85.25 E-value=3 Score=34.87 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=26.4
Q ss_pred CCcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCCh
Q 036521 397 NLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKE 436 (602)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~ 436 (602)
.+.++|+... ..|.++ ..|.+.+.++||.|++.++|+.
T Consensus 54 ~~d~~i~~~~-~~~~~l-~~g~~~~~~a~~~gklki~Gd~ 91 (102)
T PF02036_consen 54 EADVTITGSY-EDLLKL-LTGELDPMQAFMSGKLKIEGDL 91 (102)
T ss_dssp S-SEEEEEEH-HHHHHH-HTTSS-HHHHHHTTSSEEEESH
T ss_pred CCcEEEEEeH-HHHHHH-HcCCCCchhhhhCCcEEEEcCH
Confidence 4556666554 444454 4688999999999999999863
No 353
>PLN02740 Alcohol dehydrogenase-like
Probab=85.22 E-value=2.1 Score=45.59 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=39.7
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+..++++|++||-+||| -|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus 191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 345678899999999987 45566677777888 69999999999888865
No 354
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=85.18 E-value=2.6 Score=45.88 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=43.4
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
..+.+.+.+.|.++|.+++++++|.+|..+++++.+.++++ .+.+|.||+|+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~ 250 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIAS 250 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEee
Confidence 56677888888888999999999999998777777766666 58899999996
No 355
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=85.14 E-value=0.67 Score=46.28 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=38.9
Q ss_pred HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
|.+....++... .|..+||+|||.|-. +-.++.|-++|.|+|..-+.-|++.
T Consensus 33 Wp~v~qfl~~~~--~gsv~~d~gCGngky---~~~~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 33 WPMVRQFLDSQP--TGSVGLDVGCGNGKY---LGVNPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred cHHHHHHHhccC--CcceeeecccCCccc---CcCCCcceeeecchhhhhccccccC
Confidence 445556666654 488999999999964 4444788999999999888777653
No 356
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.05 E-value=2.3 Score=44.43 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=38.8
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+.+....+|++||-+||| .|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 344556689999999987 46666777777788 69999999999998875
No 357
>PRK08163 salicylate hydroxylase; Provisional
Probab=85.04 E-value=2.4 Score=45.18 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 136 YVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 136 l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
+.+.|.+.+.+.+ .+++.+++|+++..+++++.|++.+|+++.+|.||.|.
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 162 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCD 162 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECC
Confidence 5566666664444 68999999999998888899888888789999999997
No 358
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.00 E-value=2.6 Score=46.95 Aligned_cols=54 Identities=9% Similarity=-0.085 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.+.+.+.+.+.+.|.+++++++|.+|.+.++.+.|.+.+|+.+.+|+||+|+-+
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~ 320 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA 320 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC
Confidence 577788877777789999999999999987788888878878999999999965
No 359
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=84.87 E-value=1.7 Score=42.13 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=36.2
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~ 593 (602)
++.+.+++|.+||-+|..+|....+++.- ....|++|+.|+......-.-+
T Consensus 66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la 118 (229)
T PF01269_consen 66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA 118 (229)
T ss_dssp -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh
Confidence 34567899999999999999999999986 3569999999996554443333
No 360
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=84.83 E-value=3.1 Score=44.53 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.+.+.+.+.+.++|.+++++++|.++.. ++.+.|...+|+++.+|.||+|+-.
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 3445667777778999999999999976 4567777778888999999999854
No 361
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.68 E-value=2.4 Score=44.91 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=40.6
Q ss_pred HHHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+.+..++++|++||=+|+| .|.++..+|+..|+ +|+++|.+++.++.+++
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3456678899999999987 46666777887898 69999999999988865
No 362
>PRK06753 hypothetical protein; Provisional
Probab=84.59 E-value=2.4 Score=44.81 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC-hHHHHhhcc
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH-APDALRILG 196 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p-~~~a~~ll~ 196 (602)
..+.+.|.+.+. +.+|+++++|++|+++++++.|++.+|+++.+|.||-|-= -....+.+.
T Consensus 98 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 98 QTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 346667766664 4579999999999998889999888888889998888863 233444443
No 363
>PRK09126 hypothetical protein; Provisional
Probab=84.43 E-value=2.1 Score=45.62 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHHHHHh-cCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 136 YVNKVIALLE-SLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 136 l~~~la~~l~-~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
+-+.+.+.+. ..|.+|+.+++|++++..++++.|...+|+++.+|.||.|.-.
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~ 165 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSR 165 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCC
Confidence 4455555543 2478999999999999888888888888888999999999844
No 364
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=84.37 E-value=1.9 Score=41.71 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=38.8
Q ss_pred HHHHHccCC------CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521 541 LQIEKARVS------KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594 (602)
Q Consensus 541 ~l~~~l~l~------~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~ 594 (602)
..+.++... .-.+.||+|+|-|.++..+.-..--+|.-||.++.-++.|++...
T Consensus 40 ~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~ 99 (218)
T PF05891_consen 40 NFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLG 99 (218)
T ss_dssp HHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTC
T ss_pred HHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhc
Confidence 455555433 246899999999999988766545689999999999999997653
No 365
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=84.02 E-value=3.1 Score=44.18 Aligned_cols=62 Identities=15% Similarity=-0.144 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH-HHHhhcc
Q 036521 134 HSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP-DALRILG 196 (602)
Q Consensus 134 ~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~-~a~~ll~ 196 (602)
..+.+.|.+.+.+.| .+++ +++|++++.+++++.|++.+|+++.||.||.|.=.. ...+.+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 356778877777666 7788 999999998888899888888779999999998332 3444443
No 366
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=84.02 E-value=3 Score=45.01 Aligned_cols=57 Identities=19% Similarity=0.050 Sum_probs=45.0
Q ss_pred CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEE-eCCCc--EEecCEEEEecCh
Q 036521 131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEV-RGDGF--QGFYDGCIMAVHA 188 (602)
Q Consensus 131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~-~~~g~--~~~ad~VI~A~p~ 188 (602)
.|+ .+.+.+.+.+.++|.+|+++++|.+++..++++.++ +.+|+ .+.+|.||+|+-.
T Consensus 257 pG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 257 PGL-RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred chH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 344 588889888988899999999999999887776543 33443 4789999999854
No 367
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=83.99 E-value=3.2 Score=44.14 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh-HHHHhhcc
Q 036521 135 SYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA-PDALRILG 196 (602)
Q Consensus 135 ~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~-~~a~~ll~ 196 (602)
.+-+.|.+.+.+. |.+++.+++|+++..+++++.|...+|+++.+|.||.|.=. ....+.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4556676666554 77899999999999888889888888878999999999833 23444443
No 368
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=83.96 E-value=3.3 Score=44.87 Aligned_cols=53 Identities=25% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
+-+.|.+...+.|.+|+.+++|+++..+++++.++..+|+++.||.||.|+=.
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGV 162 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCC
Confidence 33445555555699999999999998877776544455667999999999843
No 369
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=83.73 E-value=3.2 Score=45.78 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~ 186 (602)
.++.+.+.+.|+++|.++++++.|++|...+++ ..|...+|+.+.+|.||+|+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~ 284 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAI 284 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEee
Confidence 567788888898889999999999999876554 55666667778999999986
No 370
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=83.70 E-value=3.2 Score=44.09 Aligned_cols=55 Identities=18% Similarity=-0.035 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
..+.+.|.+.+.+.+..++.+++|++++.+++++.|++.+|+++.+|.||.|.=.
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~ 165 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGR 165 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCC
Confidence 3566777777765555559999999999998999998888888999999999743
No 371
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.51 E-value=2.8 Score=42.01 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=41.1
Q ss_pred HHccCCCCCeEEEEecCc-hHHHHHHHhccCCE-EEEEcCCHHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQLKYAEMK 592 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~ 592 (602)
....+++|++||-.|||. |..++.+|+..|++ |++++.+++..+.+++.
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 356788999999999986 77778888888888 99999999998877654
No 372
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=83.22 E-value=3.7 Score=41.32 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC-CcEEecCEEEEecChHH
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD-GFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~-g~~~~ad~VI~A~p~~~ 190 (602)
.+.+.|.+.+.+.|.+++++++|+++..+++++.+...+ +.++.+|.||.|+-...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 455666666666689999999999999888887765443 44789999999996543
No 373
>PRK14727 putative mercuric reductase; Provisional
Probab=83.21 E-value=3.4 Score=45.49 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=45.0
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
...+.+.+.+.|.++|.+++++++|.+++.+++++.|.+.++ ++.+|.||+|+..
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~ 281 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGR 281 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCC
Confidence 345667788888888999999999999988777777776666 5889999999854
No 374
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.20 E-value=2.8 Score=43.58 Aligned_cols=49 Identities=31% Similarity=0.445 Sum_probs=39.1
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~ 591 (602)
+..+.+++|++||=+|+| -|.+++.+|+..|++ |++++.+++.++.+++
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 456778899999999886 455556677778988 9999999999888754
No 375
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=83.17 E-value=3.3 Score=45.15 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCC-cEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDG-FQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g-~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.++++++.|++|..++++ +.|...+| +.+.+|.||+|+.
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G 262 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIG 262 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeC
Confidence 456677888888889999999999999876555 66666666 4689999999963
No 376
>PTZ00052 thioredoxin reductase; Provisional
Probab=82.90 E-value=3.7 Score=45.50 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=43.7
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
..+.+.+.+.|.++|.++++++.|.+++..++++.|...+|+++.+|.||+|+
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~ 274 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYAT 274 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEee
Confidence 35667888888888999999999999987666677777677778999999986
No 377
>PLN02463 lycopene beta cyclase
Probab=82.87 E-value=3.5 Score=44.96 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
.+.+.|.+.+.+.|.+++ .++|++|+..++++.|++.+|+++.||.||.|+=
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG 166 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATG 166 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcC
Confidence 566777777766677875 6799999998888989888888899999999983
No 378
>PRK14694 putative mercuric reductase; Provisional
Probab=82.82 E-value=3.7 Score=45.07 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=44.3
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
...+.+.+.+.+.++|.++++++.|.+|+.+++.+.+.+.++ ++.+|.||+|+-
T Consensus 217 ~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G 270 (468)
T PRK14694 217 DPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATG 270 (468)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccC
Confidence 356778888888888999999999999988766666666555 699999999974
No 379
>PRK06184 hypothetical protein; Provisional
Probab=82.81 E-value=3.3 Score=45.85 Aligned_cols=61 Identities=20% Similarity=0.138 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe---CCCcEEecCEEEEecChHH-HHhhcc
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR---GDGFQGFYDGCIMAVHAPD-ALRILG 196 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~---~~g~~~~ad~VI~A~p~~~-a~~ll~ 196 (602)
+-+.|.+.+.+.|.+|+++++|+++++++++|+++. .+++++.+|.||.|.=... ..+.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 445666666666889999999999999888887765 5566789999999984333 444443
No 380
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=82.70 E-value=3.8 Score=44.95 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=42.5
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC--CC--cEEecCEEEEec
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG--DG--FQGFYDGCIMAV 186 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~--~g--~~~~ad~VI~A~ 186 (602)
...+.+.+.+.|.++|.+|+++++|+++..+++++.++.. +| +++.+|.||+|+
T Consensus 212 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~ 269 (466)
T PRK07818 212 DAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAI 269 (466)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECc
Confidence 3456788888888889999999999999877666655432 55 368999999996
No 381
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=82.61 E-value=3.5 Score=44.71 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCC----eEEEEeCCCc--EEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDE----GRTEVRGDGF--QGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~----gv~v~~~~g~--~~~ad~VI~A~p 187 (602)
..+.+.|.+.+.+.|.+|+++++|+++..+++ |+.+...+++ .+.++.||+|+=
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtG 189 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATG 189 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecC
Confidence 46788888888888999999999999998644 3445444554 357899999983
No 382
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=82.58 E-value=2.6 Score=44.78 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=41.4
Q ss_pred HHHHHHHHHhc-CCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 136 YVNKVIALLES-LGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 136 l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
+-+.|.+.+.+ .|.+|+.+++|+++..++++|.|++.+|..+.+|.||.|.=
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 166 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADG 166 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence 44555555533 36799999999999988889998888887889999999983
No 383
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.45 E-value=3.1 Score=43.72 Aligned_cols=49 Identities=27% Similarity=0.500 Sum_probs=39.6
Q ss_pred HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+...+++|++||-+|||. |..++.+|+..|+ +|+++|.+++.++.+++
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3455788999999999873 6667778887888 49999999999988864
No 384
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=82.24 E-value=3.8 Score=45.06 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=43.2
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC--C--cEEecCEEEEecC
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD--G--FQGFYDGCIMAVH 187 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~--g--~~~~ad~VI~A~p 187 (602)
...+.+.+.+.|.++|.+|+++++|++|+.+++++.|...+ | +.+.+|.||+|+.
T Consensus 223 d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G 281 (475)
T PRK06327 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIG 281 (475)
T ss_pred CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccC
Confidence 35677788888888899999999999999877777665432 4 3578999999974
No 385
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=82.03 E-value=3.7 Score=43.59 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=47.9
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
...+.+.+.+.+. .++.+++++.|++|+.+++++.|++.+|+++.|+.||-|.++..
T Consensus 86 ~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 86 RADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 3467788888886 46789999999999999988888888998899999999987543
No 386
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=82.01 E-value=4.2 Score=43.58 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEec-CCeE-EEEeCCCcEEecCEEEEecChHH
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQY-DEGR-TEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~-~~gv-~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
.+...+++...++|.+++.+++|++|+.. ++++ .|.+.+| ++.+++||+|+-+..
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 45566777777779999999999999764 3444 4667777 699999999975543
No 387
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=82.00 E-value=3 Score=43.93 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=40.5
Q ss_pred cHhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521 133 SHSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 133 ~~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
...+...|++.+.++ |.+|+.+++|.+|+.. .|.+.+| .+.||+||+|+-+..
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 345677787776554 8999999999999753 5667777 478999999996643
No 388
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=81.90 E-value=0.47 Score=49.73 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHHHHHhcCccc-cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC----eEEEEeC----CCcEEe
Q 036521 108 ILSFYRNHHLLQ-LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE----GRTEVRG----DGFQGF 178 (602)
Q Consensus 108 ~l~~~~~~g~~~-~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~----gv~v~~~----~g~~~~ 178 (602)
|+.|+..+|-+. .-..+...+.+.-..++.+-+++.+ +.+|+++++|++|+...+ .|+|.+. +++++.
T Consensus 71 flnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~---~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ 147 (341)
T PF13434_consen 71 FLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQL---DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYR 147 (341)
T ss_dssp HHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCG---TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEE
T ss_pred HHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhC---CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEE
Confidence 667777665211 0001112233333445666777777 556999999999998654 3888772 345789
Q ss_pred cCEEEEecC
Q 036521 179 YDGCIMAVH 187 (602)
Q Consensus 179 ad~VI~A~p 187 (602)
|++||+|+-
T Consensus 148 ar~vVla~G 156 (341)
T PF13434_consen 148 ARNVVLATG 156 (341)
T ss_dssp ESEEEE---
T ss_pred eCeEEECcC
Confidence 999999984
No 389
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.88 E-value=3.9 Score=43.16 Aligned_cols=49 Identities=29% Similarity=0.381 Sum_probs=38.8
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+..++++|++||=.|+| .|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 345678899999999986 45555667777888 89999999998888754
No 390
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=81.62 E-value=4 Score=42.33 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=41.1
Q ss_pred HHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
+...+.+|++||-.|+|. |..++.+|+..|++|++++-|+++.+.+++
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 456788999999999885 888888999889999999999999888754
No 391
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=81.36 E-value=3.9 Score=44.80 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=44.1
Q ss_pred cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEe--CCC--cEEecCEEEEecCh
Q 036521 130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVR--GDG--FQGFYDGCIMAVHA 188 (602)
Q Consensus 130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~--~~g--~~~~ad~VI~A~p~ 188 (602)
.++...+...|.+.+.+.|.+|+++++|++|..++++|. |+. .+| ..+.++.||+|+-.
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 344567888898888888999999999999988666542 332 333 25789999999843
No 392
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.13 E-value=4 Score=42.78 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=41.0
Q ss_pred HHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAE 590 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~ 590 (602)
.+...+++|++||=.|+ |.|.+++.+|+..|++|++++.|++..+.++
T Consensus 151 ~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 151 YEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 34567889999999998 4788888899888999999999998888775
No 393
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=81.06 E-value=3.9 Score=41.33 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=37.9
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~ 591 (602)
++.+...+|++||-+|+| -|.++..+|+..|++ |+.+|.+++-++.+++
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 455566689999999986 455666677777886 9999999988877765
No 394
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=80.90 E-value=4.1 Score=41.96 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=42.1
Q ss_pred HHHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521 541 LQIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~ 592 (602)
..++.+.+++|+.|.-+|||. |-.++.-|+..|+ ++++||++++-++.|++.
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 346778899999999999995 4445555665665 899999999999999874
No 395
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=80.58 E-value=4.6 Score=42.64 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=39.1
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+...+++|++||-+|+| -|.++..+|+..|+ +|+++|.+++.++.+++
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 455678899999999986 45556667777888 79999999999888754
No 396
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.57 E-value=5 Score=39.58 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=38.2
Q ss_pred CCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 548 VSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 548 l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
+.+|++||..|+|. |..+..+++..|++|++++.+++..+.+++.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 47899999999995 7778888887899999999999888877543
No 397
>PRK06370 mercuric reductase; Validated
Probab=80.30 E-value=5 Score=43.89 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe--C-CCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR--G-DGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~--~-~g~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.+|+++++|.+|...++++.|.. . +++++.+|.||+|+.
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G 268 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVG 268 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcC
Confidence 34566777778778999999999999998776655433 2 344689999999974
No 398
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.05 E-value=4.3 Score=42.67 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=38.0
Q ss_pred ccCCCCCeEEEEecCc-hHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHH
Q 036521 546 ARVSKGHGVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKV 593 (602)
Q Consensus 546 l~l~~g~~vLDiGcG~-G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~ 593 (602)
...+++.+|+-+|||. |.++..+|+..| .+|+.+|.+++-++.|++..
T Consensus 164 ~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 3445555999999995 666677777766 58999999999999998843
No 399
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=79.84 E-value=5 Score=45.37 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE---EEEeCCCc-EEec-CEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR---TEVRGDGF-QGFY-DGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv---~v~~~~g~-~~~a-d~VI~A~p~ 188 (602)
..++..|.+.+.++|.+|+++++|++|..+++.| .+...++. .+.+ +.||+|+=.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg 276 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGG 276 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCC
Confidence 4577888888888899999999999988765543 33334443 4678 899999843
No 400
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=79.82 E-value=5.3 Score=43.38 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
..+.+.+.+.+.++|.+++++++|++|..+++++.+.. +|+++.+|.||+|+
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~ 249 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYAT 249 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEee
Confidence 34556666777778999999999999988666666654 45578999999996
No 401
>PRK08013 oxidoreductase; Provisional
Probab=79.72 E-value=5.3 Score=42.77 Aligned_cols=52 Identities=10% Similarity=-0.153 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 135 SYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 135 ~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
.+-+.|.+.+.+. +.+|+.+++|++++.+++++.|+..+|+++.+|.||-|-
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgAD 164 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGAD 164 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeC
Confidence 4556666666543 579999999999999888999888888889999888886
No 402
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=79.64 E-value=3.7 Score=43.67 Aligned_cols=51 Identities=10% Similarity=-0.108 Sum_probs=40.9
Q ss_pred HHHHHHHHHhc-CCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 136 YVNKVIALLES-LGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 136 l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
+-..|.+.+.+ .+.+|+.+++|++++.++++++|+..+|+++.+|.||.|.
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgAD 163 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGAD 163 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 44445454433 2578999999999999989999988888889999999997
No 403
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=79.63 E-value=4.4 Score=44.99 Aligned_cols=56 Identities=14% Similarity=-0.101 Sum_probs=42.7
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC---CCc--EEecCEEEEecChH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG---DGF--QGFYDGCIMAVHAP 189 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~---~g~--~~~ad~VI~A~p~~ 189 (602)
..++..++....++|.+|+.+++|+++.+++++|.|++. +|+ ++.++.||.|+-+.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 345566666666779999999999999988777766543 243 58999999999653
No 404
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=79.50 E-value=5.5 Score=43.93 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC---cEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG---FQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g---~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|+++|.+|++++.|.+|...++++.|+..++ +++.+|.||+|+-
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G 276 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIG 276 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEec
Confidence 45667788888888999999999999988766666654444 3689999999973
No 405
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=79.47 E-value=4.9 Score=43.15 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=42.2
Q ss_pred CcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE---EEE-eCCCc--EEecCEEEEecCh
Q 036521 132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR---TEV-RGDGF--QGFYDGCIMAVHA 188 (602)
Q Consensus 132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv---~v~-~~~g~--~~~ad~VI~A~p~ 188 (602)
+-..+.+.+.+.++++|.+|+++++|+++..+++.| .+. ..+|+ .+.|+.||+||=-
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 445788999999998899999999999999987754 333 24565 4689999999843
No 406
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=79.35 E-value=5.7 Score=42.56 Aligned_cols=52 Identities=6% Similarity=-0.141 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhc-CCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 135 SYVNKVIALLES-LGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 135 ~l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
.+.+.|.+.+.+ .+.+|+++++|++++.+++++.|+..+|+++.+|-||.|-
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgAD 164 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGAD 164 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeC
Confidence 455566666644 2578999999999999888999988888889999999997
No 407
>PRK06996 hypothetical protein; Provisional
Probab=79.28 E-value=5.2 Score=42.79 Aligned_cols=63 Identities=16% Similarity=-0.036 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC---cEEecCEEEEecC--hHHHHhhcc
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG---FQGFYDGCIMAVH--APDALRILG 196 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g---~~~~ad~VI~A~p--~~~a~~ll~ 196 (602)
..+-+.|.+.+.+.|.+++.+++|++++.++++|+|+..+| +++.+|.||-|-= .....+.+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 35667777777777889999999999999999999886643 4789998888843 233344443
No 408
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=79.10 E-value=6 Score=43.92 Aligned_cols=53 Identities=6% Similarity=-0.019 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCe---EEEEeCCCc--EEecCEEEEecC
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEG---RTEVRGDGF--QGFYDGCIMAVH 187 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g---v~v~~~~g~--~~~ad~VI~A~p 187 (602)
.+.+.|.+.+.+.|.+|+++++|++|..++++ |.+...+|+ ++.+|.||+|+=
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 57788888888889999999999999876554 444444443 578999999983
No 409
>PRK13748 putative mercuric reductase; Provisional
Probab=79.06 E-value=5.6 Score=44.73 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=44.2
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
...+.+.+.+.|.++|.+|+++++|.+|+.+++++.+.+.++ .+.+|.||+|+-
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G 362 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATG 362 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccC
Confidence 456777888888888999999999999987776777766666 689999999974
No 410
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=78.85 E-value=5.5 Score=41.06 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=40.7
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
....+++|++||-.||| .|..+..+|+..|++|++++.++++.+.+++
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34678889999999997 7888888888889999999999999888754
No 411
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=78.72 E-value=6.2 Score=44.43 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=41.5
Q ss_pred ecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE---EEEeCCCc-EEec-CEEEEecC
Q 036521 129 VRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR---TEVRGDGF-QGFY-DGCIMAVH 187 (602)
Q Consensus 129 ~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv---~v~~~~g~-~~~a-d~VI~A~p 187 (602)
..+| +.|+.+|.+.+.+.|.+|+++++|+++..+++.| .+...+++ .+.+ +.||+||=
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAG 275 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecC
Confidence 3455 7899999998888899999999999998654433 23322332 3456 57999983
No 412
>PRK05868 hypothetical protein; Validated
Probab=78.54 E-value=5.5 Score=42.22 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec-ChHHHHhhc
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV-HAPDALRIL 195 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~-p~~~a~~ll 195 (602)
|.+.|.+.+ ..|.+++++++|++++.++++|+|+..+|+++.+|-||-|- .-....+.+
T Consensus 107 L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 107 LVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred HHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 344443333 23678999999999998888899998888889999888775 333344444
No 413
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.51 E-value=5.8 Score=40.93 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=41.6
Q ss_pred HHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 542 QIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
+.+..++++|++||=.|. |.|.+++.+|+..|++|++++-|++..+.+++
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 345667889999999984 58888888999889999999999998887754
No 414
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=78.34 E-value=5.7 Score=41.84 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=38.9
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+...+++|++||=+||| .|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 455678899999999986 45555667777888 79999999998888754
No 415
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=78.34 E-value=6.3 Score=41.98 Aligned_cols=54 Identities=24% Similarity=0.174 Sum_probs=44.8
Q ss_pred cHhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeC-CCcEEecCEEEEec
Q 036521 133 SHSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRG-DGFQGFYDGCIMAV 186 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~-~g~~~~ad~VI~A~ 186 (602)
...+.+.|.+.+.+.+ .+++.+++|+.++++++++.|+.. +|+++.||-||-|=
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 4467788888886656 699999999999999999888877 88889999777773
No 416
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=78.19 E-value=5.7 Score=41.25 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=41.2
Q ss_pred HHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
+..++++|++||=.|+ |-|.+++.+|+..|++|++++-+++..+.+++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4567889999999996 57888888998889999999999988888765
No 417
>PRK07846 mycothione reductase; Reviewed
Probab=77.87 E-value=6 Score=43.18 Aligned_cols=53 Identities=23% Similarity=0.145 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.+.+.+.+.+ +.+.+++++++|++++.+++++.|...+|+.+.+|.||+|+..
T Consensus 208 ~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 208 DISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred HHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence 4444444433 4478999999999998877778777777878999999999743
No 418
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=77.73 E-value=6 Score=43.28 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC---CCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG---DGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~---~g~~~~ad~VI~A~p 187 (602)
..+.+.+.+.+.++|.+++++++|++|..+++++.|.+. +++++.+|.||+|+-
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G 263 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATG 263 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeEC
Confidence 456677777787789999999999999887666655542 234789999999964
No 419
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=77.58 E-value=6.3 Score=41.63 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521 134 HSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 134 ~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
..++..+++.+.++| ..+..+++|..+++..+.+.|.+.+|. +.||+||+|+=+..
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 567888988888888 566779999999885345778888885 99999999996544
No 420
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=77.43 E-value=6.5 Score=44.37 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE---EEEeCCCc-EEecC-EEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR---TEVRGDGF-QGFYD-GCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv---~v~~~~g~-~~~ad-~VI~A~p 187 (602)
..+.++|.+.+.++|.+|+++++|+++..+++.| .+...+++ .+.++ .||+|+-
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtG 272 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACG 272 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCC
Confidence 5688888888888899999999999998876643 34333443 36775 7999984
No 421
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=77.39 E-value=7.5 Score=42.50 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC-cEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG-FQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g-~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.+|++++.|.+|+..++.+.+..+++ +++.+|.||+|+-
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G 265 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVG 265 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecC
Confidence 45777888888888999999999999987666565554322 2578999999974
No 422
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=77.34 E-value=7.2 Score=40.85 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=37.1
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcC---CHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITL---SAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~---S~~~l~~a~~ 591 (602)
..+++++|++||-+||| .|.++..+|+..|++|++++. +++-++.+++
T Consensus 166 ~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 166 KRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred hhcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 34456789999999998 466777788878999999987 6777776654
No 423
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.32 E-value=7 Score=42.86 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC---C--CcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG---D--GFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~---~--g~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.+|++++.|++|+.+++++.+... + ++.+.+|.||+|+-
T Consensus 215 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 215 TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG 273 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC
Confidence 456677888888889999999999999887677655421 2 34689999999974
No 424
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=76.96 E-value=8.1 Score=39.80 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCeEEeCCceeEEEec---CCeEEEEeCCCcEEecCEEEEecChHHHHhhcc
Q 036521 137 VNKVIALLESLGCQIKTGCEVCSVLQY---DEGRTEVRGDGFQGFYDGCIMAVHAPDALRILG 196 (602)
Q Consensus 137 ~~~la~~l~~~g~~v~l~t~V~~i~~~---~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~ 196 (602)
++++...+.+.|+.++-+..|..+++. +..+.|.|.+|..+.++++|+|+=+..+. +|+
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~ 217 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLP 217 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcC
Confidence 355555555669999999999999864 34578889999779999999999887654 444
No 425
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.96 E-value=6.1 Score=43.82 Aligned_cols=56 Identities=13% Similarity=-0.159 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC--c--EEecCEEEEecChH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG--F--QGFYDGCIMAVHAP 189 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g--~--~~~ad~VI~A~p~~ 189 (602)
..+...++....++|.+++.+++|+++.++++++.|++.++ + ++.++.||.|+-+.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence 44556666666777999999999999998877777765443 2 57999999999653
No 426
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=76.86 E-value=6.1 Score=42.90 Aligned_cols=54 Identities=19% Similarity=0.101 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
..+.+.+.+.+.++|.+|+++++|.+|..+++.+.+.++++ ++.+|.||+|+..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~ 244 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCC
Confidence 45667777788888999999999999975433334545544 7999999999754
No 427
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.81 E-value=5 Score=41.88 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=35.6
Q ss_pred HccCCCCCeEEEEecCc-hHHHHHHHhc-c-CCEEEEEcCCHHHHHHHHH
Q 036521 545 KARVSKGHGVLEIGCGW-GTFAIEVVRQ-T-GCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 545 ~l~l~~g~~vLDiGcG~-G~~~~~la~~-~-g~~v~gid~S~~~l~~a~~ 591 (602)
.+.+++|++||-+|||. |.+++.+|++ . +++|+++|.+++.++.|++
T Consensus 158 ~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 158 QIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 34567899999999974 3344566664 4 4689999999999888865
No 428
>PRK06175 L-aspartate oxidase; Provisional
Probab=76.63 E-value=9.1 Score=41.53 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHhc-CCCeEEeCCceeEEEecCCeE---EEEeCCCc-EEecCEEEEecCh
Q 036521 134 HSYVNKVIALLES-LGCQIKTGCEVCSVLQYDEGR---TEVRGDGF-QGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv---~v~~~~g~-~~~ad~VI~A~p~ 188 (602)
..+.+.|.+.+.+ .|.+|+++++|+.|..+++.+ .+...++. .+.|+.||+||=.
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 4577888877754 488999999999998765543 22333332 4789999999844
No 429
>PRK10015 oxidoreductase; Provisional
Probab=76.56 E-value=7.5 Score=42.15 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 138 NKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 138 ~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
..|++...+.|.+++.+++|+.+..+++++.++..++.++.||.||.|.=
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 112 PWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred HHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 34555555568999999999999887777754333445789999999973
No 430
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=76.33 E-value=0.58 Score=44.31 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=34.8
Q ss_pred CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
..++||+|.|-|.++.+++.. --+|.+.++|..|..+.+++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence 368999999999999999885 34689999999998887654
No 431
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=75.93 E-value=7.2 Score=40.06 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=41.2
Q ss_pred HHHHccCCCCCeEEEEe--cCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 542 QIEKARVSKGHGVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiG--cG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
+.+..++++|++||=.| .|.|.+++.+|+..|++|++++-|++..+.+++
T Consensus 135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 34556788999999998 357888888998889999999999988887755
No 432
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=75.86 E-value=7.7 Score=41.16 Aligned_cols=56 Identities=9% Similarity=-0.203 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEec-CCeEEEEeCCCcEEecCEEEEecChHH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQY-DEGRTEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~-~~gv~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
..+.+.+.+.+.+.|.+++ .++|..+..+ ++++.|++.+|+++.|+.||.|+....
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4567778777766677774 6789999877 566788888887899999999997764
No 433
>PLN02827 Alcohol dehydrogenase-like
Probab=75.71 E-value=7.7 Score=41.19 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=37.1
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+...+++|++||-.|+| -|.+++.+|+..|+ .|+++|.+++..+.|++
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 34567899999999986 45555667777787 58899999998887754
No 434
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=75.36 E-value=7.7 Score=41.54 Aligned_cols=53 Identities=17% Similarity=0.011 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEeCC-C--cEEecCEEEEec
Q 036521 134 HSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVRGD-G--FQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~~~-g--~~~~ad~VI~A~ 186 (602)
+.+.+.|.+.+.+. +.+++++++|++|+.+++++.|+..+ + .++.||.||.|.
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgAD 177 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAAD 177 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeC
Confidence 45777777777553 57899999999999888888877642 2 358999999997
No 435
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.35 E-value=7.7 Score=41.64 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=37.7
Q ss_pred HHHHHccC-CCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 541 LQIEKARV-SKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 541 ~l~~~l~l-~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
.+++..++ -+|++|+-+|||+ |.....+++..|++|+.+|.++.-++.|++
T Consensus 191 ~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 191 GIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred HHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 44555444 5799999999997 444444555579999999999987777754
No 436
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=75.27 E-value=8.6 Score=40.68 Aligned_cols=52 Identities=8% Similarity=-0.018 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
..+-+.|.+.+.+.+ .+++.+++|+++..++++|.|..+++ ++.+|-||-|-
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgAD 156 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICD 156 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeC
Confidence 456777777776544 67899999999999888998888776 89999998886
No 437
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=75.26 E-value=9.4 Score=41.66 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.+.+.+.+.+ +.+.++++++.|++++.+++++.|...+|+++.+|.||+|+.-
T Consensus 211 ~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 211 DISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred HHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 4445554433 3478999999999999877778777777778999999999753
No 438
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=75.19 E-value=8.1 Score=45.37 Aligned_cols=53 Identities=15% Similarity=-0.023 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
..+.+.+.+.++|.+|++++.|++|..++....|+..+|+++.+|.||+|+..
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 34556666777799999999999998655445677778888999999999953
No 439
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=74.74 E-value=1.3 Score=37.51 Aligned_cols=44 Identities=20% Similarity=0.168 Sum_probs=7.4
Q ss_pred EEEecCchHHHHHHHhc--cC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 555 LEIGCGWGTFAIEVVRQ--TG--CNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 555 LDiGcG~G~~~~~la~~--~g--~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
|||||..|..+..+++. .+ .++++||..+. .+.+++.+++.++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~ 48 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS 48 (106)
T ss_dssp --------------------------EEEESS-------------GGG-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC
Confidence 79999999998888764 12 37999999996 44555555555544
No 440
>PRK07121 hypothetical protein; Validated
Probab=74.41 E-value=9.7 Score=42.04 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=40.6
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eE-EEEe-CCCc--EEec-CEEEEecC
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GR-TEVR-GDGF--QGFY-DGCIMAVH 187 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv-~v~~-~~g~--~~~a-d~VI~A~p 187 (602)
...+.+.|.+.+.++|.+|+++++|+++..+++ .+ -|.. .+++ .+.+ +.||+|+=
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtG 236 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAG 236 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCC
Confidence 456888888888888999999999999987644 33 2222 2332 4678 99999984
No 441
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=74.22 E-value=7 Score=42.22 Aligned_cols=53 Identities=19% Similarity=0.008 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
..+.+.+.+.+.++|.++++++.|.+|..++ .+ ++..+|+++.+|.||+|++.
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGI 231 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCc
Confidence 3456667777877899999999999997643 33 44556778999999999865
No 442
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=74.05 E-value=8.6 Score=39.81 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=37.8
Q ss_pred HccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 545 KARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 545 ~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+...+|++||-.|||. |..++.+|+..|+ +|++++.|+++.+.+++
T Consensus 160 ~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 160 RAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 34444889999999986 7788888887888 89999999998887654
No 443
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.98 E-value=35 Score=36.19 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHHhhHHHHHHHHhhcCCCC---CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCC-hhhH--HhhhHHHHHHHH
Q 036521 39 REIMKFKDDVLCYLEELENNPD---IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCP-SEGI--MSFSAFSILSFY 112 (602)
Q Consensus 39 ~~i~rf~~~~~~~l~~~~~~~~---~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~-~~~~--~~~p~~~~l~~~ 112 (602)
+.+++|.+.+.+|+... .++ ...+.||.+||++.++++......+..+ ++++-+ +..+ +... ..|+..+
T Consensus 196 r~LMKFltfc~~y~tEk--~~~~~~~~~e~~F~EyL~~~rltp~lqs~vl~aI--aM~~~~~~tt~eGm~at-~~fl~sl 270 (547)
T KOG4405|consen 196 RMLMKFLTFCQEYLTEK--DPDEYVEFRERPFSEYLKTMRLTPKLQSIVLHAI--AMLSESQLTTIEGMDAT-KNFLTSL 270 (547)
T ss_pred HHHHHHHHHHHHhhhcc--CcHHHHHhhcCcHHHHHHhcCCChhhHHHHHHHH--HhcCcccccHHHHHHHH-HHHHHHh
Confidence 55778988888886432 222 2236799999999999988665544433 233322 1111 1111 1233333
Q ss_pred HhcCccccCCCCcEEEecCCcHhHH---HHHHHHHhcCCCeEEeCCceeEEEecCCeEE---EEeCCCcEEecCEEEEe
Q 036521 113 RNHHLLQLFGRPQWLTVRSRSHSYV---NKVIALLESLGCQIKTGCEVCSVLQYDEGRT---EVRGDGFQGFYDGCIMA 185 (602)
Q Consensus 113 ~~~g~~~~~~~~~~~~~~gG~~~l~---~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~---v~~~~g~~~~ad~VI~A 185 (602)
+.. .+.+..+++- |-++|+ -++++-. |+=--|..+|..|..+++... +....|+.+.++++|++
T Consensus 271 Grf-----gntpfLfPlY-GqGELpQcFCRlcAVf---GgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 271 GRF-----GNTPFLFPLY-GQGELPQCFCRLCAVF---GGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVS 340 (547)
T ss_pred hcc-----CCCcceeecc-CCCcchHHHHHHHHHh---cceEEeccchhheeecccccchhhhHhhhcchhcceeeeec
Confidence 322 3445555544 334454 4666666 777789999999987765432 22346777888888876
No 444
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=73.43 E-value=17 Score=38.36 Aligned_cols=140 Identities=18% Similarity=0.099 Sum_probs=76.8
Q ss_pred HHHHHhhHHHHHHHHhhcCC-CCCC-CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhH----HHHHHHH
Q 036521 39 REIMKFKDDVLCYLEELENN-PDID-RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSA----FSILSFY 112 (602)
Q Consensus 39 ~~i~rf~~~~~~~l~~~~~~-~~~~-~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~----~~~l~~~ 112 (602)
+.+.||......+.+..... ...+ ...|+.+++.+.++.....+... -..+++..+ +-.+.|+ .-++.|+
T Consensus 138 rr~~kFl~~V~n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~g--h~~al~~dd--~~ld~p~~~~~~ri~~Y~ 213 (440)
T KOG1439|consen 138 RRVMKFLKFVLNYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIG--HAIALLCDD--SYLDQPAKETLERILLYV 213 (440)
T ss_pred HHHHHHHHHHhhhhhhccccccccccccchHHHHHHHhcccccceeeee--eeeEEEecc--hhccCccHHHHHHHHHHH
Confidence 34456666555543322111 1111 23489999999988877665321 111222221 1122232 2344454
Q ss_pred HhcCccccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC-CCcEEecCEEEEe
Q 036521 113 RNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG-DGFQGFYDGCIMA 185 (602)
Q Consensus 113 ~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~-~g~~~~ad~VI~A 185 (602)
++-+. ..+.+ +.-...|..+|++..+..-.-.|+...||.|+.+|..+.+|..+... ++++..++.||+-
T Consensus 214 ~S~~~--yg~~~-ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 214 RSFAR--YGKSP-YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICD 284 (440)
T ss_pred HHHhh--cCCCc-ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEec
Confidence 43221 12344 44556788889876665544459999999999999986666544433 3335667766554
No 445
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=73.32 E-value=5.8 Score=41.92 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=50.3
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV 600 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~ 600 (602)
...+..+||.||||+.+-.|+=+.++|.- -...|++.|.+..-++..+.++...|..+
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n 293 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN 293 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc
Confidence 44567899999999999999999998876 23579999999999999999999998764
No 446
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=73.23 E-value=4 Score=45.16 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=28.3
Q ss_pred CCCCeEEeccccC--CCCChhHHHHHHHHHHHhcCC
Q 036521 307 GKRGIWFCEAYQG--YGFHEDGLKAGMIAAHGVLGK 340 (602)
Q Consensus 307 g~~gl~~aG~~~g--~g~~E~av~SG~~aA~~ll~~ 340 (602)
+.+|||+||+|+. .| +.+++.||..+|+.|++.
T Consensus 457 ~i~gLyl~G~~~~pG~G-v~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 457 KIDNLYLVGAGTHPGAG-VPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CCCCEEEeCCCCCCCCC-HHHHHHHHHHHHHHHHhh
Confidence 4689999999984 56 679999999999999774
No 447
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=73.22 E-value=8.4 Score=36.74 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=43.0
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~ 595 (602)
++.+.+++|++||=+|.-+|....+.+.-.| ..|+||+.|+......-..+++
T Consensus 69 l~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~ 122 (231)
T COG1889 69 LKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK 122 (231)
T ss_pred cccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh
Confidence 3445789999999999999999999998744 6899999999887666555543
No 448
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=73.00 E-value=10 Score=34.17 Aligned_cols=48 Identities=19% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcC
Q 036521 533 VAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITL 581 (602)
Q Consensus 533 ~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~ 581 (602)
.||+..+++.++....-+| -|||+|-|.|..--++-+. .+.+|+.+|-
T Consensus 12 taQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 12 TAQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 5888899999999877777 7999999999999998887 6889998885
No 449
>KOG4170 consensus 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes [Lipid transport and metabolism]
Probab=73.00 E-value=17 Score=31.29 Aligned_cols=40 Identities=10% Similarity=0.259 Sum_probs=33.6
Q ss_pred CCCcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChH
Q 036521 396 CNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEE 437 (602)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~ 437 (602)
..+.+++++.|..|+.=+ .|.+-.-.|||.|..-+.|+..
T Consensus 58 ~~~Dv~~ti~d~dF~~l~--tgKl~Pq~Afm~GKlKIkG~~~ 97 (113)
T KOG4170|consen 58 GKVDVTFTIADEDFVKLL--TGKLNPQTAFMQGKLKIKGNMA 97 (113)
T ss_pred CCccEEEEecHHHHHHHH--hCCCChHHHHHcCCeeecCCHH
Confidence 367899999998887644 4999999999999999999643
No 450
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=72.99 E-value=8.3 Score=41.20 Aligned_cols=52 Identities=25% Similarity=0.205 Sum_probs=39.8
Q ss_pred CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc-EEecCEEEEec
Q 036521 131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF-QGFYDGCIMAV 186 (602)
Q Consensus 131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~-~~~ad~VI~A~ 186 (602)
.-...+.+.+.+.|+++|.+|+++++|++|+. ++++ +.+|+ .+.++.||-|+
T Consensus 206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~v~--~~~g~~~I~~~tvvWaa 258 (405)
T COG1252 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTP--DGVT--LKDGEEEIPADTVVWAA 258 (405)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEcCCceEEECC--CcEE--EccCCeeEecCEEEEcC
Confidence 33446677777788888999999999999986 4444 44554 48999999986
No 451
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.92 E-value=9.6 Score=39.25 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=39.5
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~ 591 (602)
+...+++|++||-+|+| .|..++.+|+..|++ |+.++-+++..+.+++
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 55678899999999987 377778888888887 8999999998887754
No 452
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=72.73 E-value=10 Score=42.20 Aligned_cols=57 Identities=14% Similarity=-0.044 Sum_probs=42.3
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE---EEEe-CCCc--EEecCEEEEecChH
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR---TEVR-GDGF--QGFYDGCIMAVHAP 189 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv---~v~~-~~g~--~~~ad~VI~A~p~~ 189 (602)
...++..+++...++|.+|+.+++|++|.++++++ .+.. .+|+ .+.++.||.|+-+.
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 34566777777777899999999999999877764 3322 2342 68999999999544
No 453
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=72.52 E-value=9.1 Score=43.77 Aligned_cols=51 Identities=14% Similarity=-0.037 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
.|.+.|++.+. ...++.+++|++|+.++++|+|+..+|+++.+|.||.|-=
T Consensus 195 ~L~~~L~~alg--~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG 245 (668)
T PLN02927 195 TLQQILARAVG--EDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADG 245 (668)
T ss_pred HHHHHHHhhCC--CCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCC
Confidence 46677777763 2347889999999998899999888888899999999873
No 454
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.50 E-value=9.3 Score=39.72 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=40.1
Q ss_pred HHccCCCCCeEEEEecCc-hHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~-v~gid~S~~~l~~a~~ 591 (602)
+...+++|++||-.|+|. |..++.+|+..|++ |+.++-++++.+.+++
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 567789999999998876 77888888888987 9999999988887754
No 455
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=72.47 E-value=5.5 Score=38.27 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=24.6
Q ss_pred HHHHHHHHHccCCC-CCeEEEEecCchHHHHHHHhccCCEEEEEcCC
Q 036521 537 RKHSLQIEKARVSK-GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLS 582 (602)
Q Consensus 537 ~~~~~l~~~l~l~~-g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S 582 (602)
+-++.+++.+.-.| +..|-|+|||-+.++..+.. +.+|...|+-
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLv 102 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLV 102 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeecc
Confidence 34456677765444 57899999999999966543 4567777764
No 456
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.07 E-value=11 Score=38.71 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=39.5
Q ss_pred HHHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
+++..++++|++||=.|+| -|..++.+|+..|++|+.++.+++..+.+++
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR 197 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 3466778899999999875 4445555677689999999999999988875
No 457
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=71.77 E-value=10 Score=41.02 Aligned_cols=50 Identities=22% Similarity=0.104 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.+|+++++|.++.. ++ |++.+|+++.+|.||+++.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccC
Confidence 45667788888888999999999999864 33 4456787899999999864
No 458
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=71.67 E-value=9.3 Score=39.65 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=37.8
Q ss_pred CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHH
Q 036521 550 KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 550 ~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~ 592 (602)
.-.+||-+|-|-|--++.+-+.++ -+++-||++|+|++.+++.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhh
Confidence 346899999999999999998764 4899999999999999954
No 459
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=71.50 E-value=12 Score=42.11 Aligned_cols=56 Identities=14% Similarity=-0.035 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE---EEEe-CCC--cEEecCEEEEecChH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR---TEVR-GDG--FQGFYDGCIMAVHAP 189 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv---~v~~-~~g--~~~~ad~VI~A~p~~ 189 (602)
..+..+++....++|.+++.+++|++|.++++++ .+.. .+| ..+.+|.||.|+-+.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 3456666666677799999999999999887654 3322 233 368999999999654
No 460
>PTZ00058 glutathione reductase; Provisional
Probab=71.23 E-value=13 Score=41.85 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eEEEEeCC-CcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GRTEVRGD-GFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv~v~~~~-g~~~~ad~VI~A~p 187 (602)
.++.+.+.+.|.++|.++++++.|.+|+.+++ ++.+...+ ++++.+|.||+|+-
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence 45667788888888999999999999987654 56555433 44689999999974
No 461
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=71.21 E-value=9.9 Score=39.97 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
.+.+.+.+.|.++|.++++++.|.++.. + .|++.+|+++.+|.||+|+..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 3556667777778999999999999853 2 355567778999999999864
No 462
>PLN02697 lycopene epsilon cyclase
Probab=70.06 E-value=13 Score=41.52 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEE-EeCCCcEEecCEEEEecChHH
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTE-VRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v-~~~~g~~~~ad~VI~A~p~~~ 190 (602)
..+.+.|.+.+.+.|.++ ++++|++|..+++++.+ ++.+|.++.|+.||.|+=+..
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 356677777777668887 88999999988777654 456677899999999985443
No 463
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=70.01 E-value=12 Score=37.76 Aligned_cols=48 Identities=29% Similarity=0.467 Sum_probs=39.2
Q ss_pred HHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
+...+.+|+.||-.|| +.|..++.+|+..|++|++++.+++..+.+++
T Consensus 133 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 182 (323)
T cd08241 133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA 182 (323)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 3456788999999998 47777778888789999999999988877643
No 464
>PRK06475 salicylate hydroxylase; Provisional
Probab=69.63 E-value=13 Score=39.63 Aligned_cols=52 Identities=17% Similarity=0.023 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEe---CCCcEEecCEEEEec
Q 036521 135 SYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVR---GDGFQGFYDGCIMAV 186 (602)
Q Consensus 135 ~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~---~~g~~~~ad~VI~A~ 186 (602)
.|.+.|.+.+.+. +.+|+++++|+++.++++++.|+. .+++++.+|-||-|-
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgAD 163 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACD 163 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECC
Confidence 4666676666432 578999999999998888887764 334568899888775
No 465
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=69.41 E-value=9.4 Score=42.60 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=36.0
Q ss_pred cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-----eEEEEeCC-Cc--EEecCEEEEecC
Q 036521 133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-----GRTEVRGD-GF--QGFYDGCIMAVH 187 (602)
Q Consensus 133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-----gv~v~~~~-g~--~~~ad~VI~A~p 187 (602)
+.++.+.-++... ....|++||+|++|++.++ .|.|++.+ |+ +..||+||+|+=
T Consensus 86 v~~Yl~~Ya~~f~-L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 86 VLEYLESYAEHFG-LRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp HHHHHHHHHHHTT-GGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred HHHHHHHHHhhhC-CcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 3344445555431 1247999999999998653 58888754 43 357999999983
No 466
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=69.39 E-value=17 Score=36.96 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=48.1
Q ss_pred HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
.....+++. ...+|+.|||-=+|.|..++.+.+ .|-+++|++++++-++.+.+|....
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence 344455655 667899999999999999986555 6899999999999999999998754
No 467
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=69.27 E-value=3.3 Score=42.49 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=45.6
Q ss_pred HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHH-------HHHHHHHcCCC
Q 036521 542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKY-------AEMKVNEAGLQ 599 (602)
Q Consensus 542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~-------a~~~~~~~gl~ 599 (602)
+...+.++||+-|.|==.|||++...+|. .|+-|.|.||+=.|+.- .+.+.++.|.+
T Consensus 200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~ 263 (421)
T KOG2671|consen 200 MANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS 263 (421)
T ss_pred HhhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCc
Confidence 34556689999999999999999998887 79999999999888872 34455555543
No 468
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=69.18 E-value=3.5 Score=41.19 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=33.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA 596 (602)
Q Consensus 549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~ 596 (602)
..|.++||||||.-..-..-|...--+++..|.++.-.+..++-+++.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~ 102 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE 102 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC
Confidence 357899999999855543334433347999999999999998887654
No 469
>PRK08244 hypothetical protein; Provisional
Probab=69.05 E-value=13 Score=41.13 Aligned_cols=51 Identities=27% Similarity=0.145 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe--CCC-cEEecCEEEEec
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR--GDG-FQGFYDGCIMAV 186 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~--~~g-~~~~ad~VI~A~ 186 (602)
+-+.|.+.+.+.|.+|+.+++|++++++++++.|+. .+| +++++|.||.|.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgAD 155 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGAD 155 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECC
Confidence 334444455555889999999999999888887654 345 368999999987
No 470
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=68.80 E-value=14 Score=43.72 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEecCC--eEEEEeCCCcEEecCEEEEecChHH
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQYDE--GRTEVRGDGFQGFYDGCIMAVHAPD 190 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~--gv~v~~~~g~~~~ad~VI~A~p~~~ 190 (602)
..+.+.+.|.++|.+|++++.|.+|..+++ ...|...+|+.+.+|.||+|+....
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 345666777778999999999999986532 3456677888899999999995433
No 471
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=68.59 E-value=15 Score=40.38 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEe-cCCeEEE-EeCCCc--EEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQ-YDEGRTE-VRGDGF--QGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~-~~~gv~v-~~~~g~--~~~ad~VI~A~p~ 188 (602)
..+.+.+.+.|.++|.+|++++.|.+|.. .++++.+ ...+|+ ++.+|.||+|+..
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~ 279 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR 279 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC
Confidence 45667777788888999999999999986 2345543 344553 5889999999754
No 472
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.24 E-value=12 Score=38.17 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=39.9
Q ss_pred HHHccCCCCCeEEEEecCchHHHHHH-HhccCC-EEEEEcCCHHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCGWGTFAIEV-VRQTGC-NYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG~G~~~~~l-a~~~g~-~v~gid~S~~~l~~a~~~ 592 (602)
..-+.++||+.|--+|+|.=+++... |+..|+ +++|||++++-.+.|++.
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 45667899999999999976666544 554554 999999999999998764
No 473
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=68.01 E-value=10 Score=39.09 Aligned_cols=52 Identities=31% Similarity=0.228 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe--C-CCc--EEecCEEEEec
Q 036521 135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR--G-DGF--QGFYDGCIMAV 186 (602)
Q Consensus 135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~--~-~g~--~~~ad~VI~A~ 186 (602)
.+-+.|.+.+.+.|.+|+.+++|.+++.+++++.+.. . +|+ ++.||.||-|-
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgAD 168 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGAD 168 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-S
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeeccc
Confidence 4667777777777899999999999999988875543 2 343 57899888886
No 474
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=67.92 E-value=14 Score=38.18 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=38.6
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
..+.+.+|++||=.||| .|..++.+|+..|++|+.++.+++.++.+++
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK 205 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 44577889999999976 5666677788789999999999988888754
No 475
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=67.83 E-value=12 Score=41.80 Aligned_cols=59 Identities=25% Similarity=0.184 Sum_probs=41.5
Q ss_pred HHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEeC--CC--cEEecCEEEEecChHH-HHhhcc
Q 036521 138 NKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVRG--DG--FQGFYDGCIMAVHAPD-ALRILG 196 (602)
Q Consensus 138 ~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~~--~g--~~~~ad~VI~A~p~~~-a~~ll~ 196 (602)
+.|.+.+.+. |.+|+.+++|+++++++++|+|+.. +| +++.+|.||-|.=... ..+.+.
T Consensus 117 ~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 117 AVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 4455555432 7899999999999999999887754 46 3688999998873333 334443
No 476
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=67.77 E-value=44 Score=35.01 Aligned_cols=139 Identities=13% Similarity=0.013 Sum_probs=77.5
Q ss_pred HHHHHhhHHHHHHHHhhcCCCCCCCCCCHHHHH-HhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCc
Q 036521 39 REIMKFKDDVLCYLEELENNPDIDRDETLGQFI-KSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHL 117 (602)
Q Consensus 39 ~~i~rf~~~~~~~l~~~~~~~~~~~~~s~~~~l-~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~ 117 (602)
+.++||.++...+........+.+.+-++-+++ ++.+++.+..+.+...|+-. .+.+....-..-.++.|+++-+.
T Consensus 139 r~vmrFl~~V~n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~---ldl~~p~re~~erIl~Y~~Sf~~ 215 (434)
T COG5044 139 RRVMRFLKWVSNYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS---LDLDIPAREALERILRYMRSFGD 215 (434)
T ss_pred HHHHHHHHHHHhHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh---ccccCCchHHHHHHHHHHHhhcc
Confidence 556778777666644332333333444556665 45566655544333322211 11111122223446667765442
Q ss_pred cccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEe
Q 036521 118 LQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMA 185 (602)
Q Consensus 118 ~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A 185 (602)
- .+.|.+++.-| ..+|.+-.+..-.-.|+...||+++.+|....+ | .|. .++.+..|.+||..
T Consensus 216 y--g~~pyLyp~YG-l~El~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~-~~~~~~ka~KiI~~ 279 (434)
T COG5044 216 Y--GKSPYLYPRYG-LGELSQGFARSSAVYGGTYMLNQAIDEINETKD-VETVD-KGSLTQKAGKIISS 279 (434)
T ss_pred c--CCCcceeeccC-chhhhHHHHHhhhccCceeecCcchhhhccccc-eeeee-cCcceeecCcccCC
Confidence 2 34567777665 778887776655445999999999999987665 4 222 23336677777644
No 477
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=67.75 E-value=11 Score=41.43 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=36.0
Q ss_pred CCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521 548 VSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591 (602)
Q Consensus 548 l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~ 591 (602)
..++.+||-+|||. |..+..+++..|+.|+.+|.+++.++.+++
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 44678999999995 566666777789999999999998887765
No 478
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=67.58 E-value=14 Score=40.00 Aligned_cols=53 Identities=17% Similarity=0.017 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHhcCC---CeEEeCCceeEEEec-------CCeEEEEeCCCcEEecCEEEEec
Q 036521 134 HSYVNKVIALLESLG---CQIKTGCEVCSVLQY-------DEGRTEVRGDGFQGFYDGCIMAV 186 (602)
Q Consensus 134 ~~l~~~la~~l~~~g---~~v~l~t~V~~i~~~-------~~gv~v~~~~g~~~~ad~VI~A~ 186 (602)
..+.+.|.+.+.+.+ .+++.+++|++++.+ +++++|+..+|+++.||.||-|-
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgAD 179 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGAD 179 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEec
Confidence 345566777766544 689999999999753 45788888888889999888885
No 479
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=67.34 E-value=14 Score=38.36 Aligned_cols=46 Identities=28% Similarity=0.454 Sum_probs=38.3
Q ss_pred HccCCCCCeEEEEecCc-hHHHHHHHhccCCE-EEEEcCCHHHHHHHH
Q 036521 545 KARVSKGHGVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQLKYAE 590 (602)
Q Consensus 545 ~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~-v~gid~S~~~l~~a~ 590 (602)
.+.+++|.+||-.|+|. |..+..+|+..|++ |++++-++++.+.++
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 45678899999999876 77888888888987 999999998887764
No 480
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=67.25 E-value=14 Score=38.51 Aligned_cols=48 Identities=31% Similarity=0.478 Sum_probs=37.5
Q ss_pred HHccCCCCCeEEEEecC-chHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~ 591 (602)
+...+++|++||=.||| .|..++.+|+..|++ |++++.+++.++.+++
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 44567889999999987 455666777778886 7899999988887754
No 481
>PRK07045 putative monooxygenase; Reviewed
Probab=67.18 E-value=11 Score=40.02 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhc-CCCeEEeCCceeEEEecCCeE--EEEeCCCcEEecCEEEEecChH
Q 036521 135 SYVNKVIALLES-LGCQIKTGCEVCSVLQYDEGR--TEVRGDGFQGFYDGCIMAVHAP 189 (602)
Q Consensus 135 ~l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv--~v~~~~g~~~~ad~VI~A~p~~ 189 (602)
.+.+.|.+.+.. .|.+++++++|++++.+++++ .|+..+|+++.+|.||-|.-..
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 455666666532 367999999999999877763 6777788888999999887443
No 482
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=66.92 E-value=15 Score=38.00 Aligned_cols=48 Identities=27% Similarity=0.451 Sum_probs=39.0
Q ss_pred HHccCCCC--CeEEEEec--CchHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKG--HGVLEIGC--GWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g--~~vLDiGc--G~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+...+++| ++||=.|+ |.|..++.+|+..|+ +|++++-|++..+.+++
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 34456666 89999986 578888889988898 89999999988887765
No 483
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=66.70 E-value=18 Score=40.73 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEe-CCCc--EEecC-EEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVR-GDGF--QGFYD-GCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~-~~g~--~~~ad-~VI~A~p~ 188 (602)
..+...|.+.+.+.|.+|+++++|++|..+++.|. |.. .+|+ .+.++ .||+|+-.
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 45778888888888999999999999988655442 222 2443 46786 59999854
No 484
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=66.68 E-value=15 Score=39.85 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~ 188 (602)
..+.+.+.+.|.++|.+++++++|.+|+. . .|+..+|+.+.+|.||+|+..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 45667788888888999999999999963 2 345556777899999999754
No 485
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=66.49 E-value=5.6 Score=43.86 Aligned_cols=32 Identities=19% Similarity=0.508 Sum_probs=27.4
Q ss_pred CCCCeEEecccc--CCCCChhHHHHHHHHHHHhcC
Q 036521 307 GKRGIWFCEAYQ--GYGFHEDGLKAGMIAAHGVLG 339 (602)
Q Consensus 307 g~~gl~~aG~~~--g~g~~E~av~SG~~aA~~ll~ 339 (602)
+.+|+|+||+++ |.| +.+++.||+.+|+.|+.
T Consensus 457 ~i~gLyl~G~~~~pG~G-v~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 457 PVKGLWLCGDSIHPGEG-TAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCeEEecCccCCCCc-HHHHHHHHHHHHHHHhh
Confidence 568999999998 456 57999999999999865
No 486
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=66.30 E-value=11 Score=40.98 Aligned_cols=48 Identities=25% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHhcCCCeEEeCCceeEEEecCCeEEEEe-CCCcEEe--cCEEEEecCh
Q 036521 141 IALLESLGCQIKTGCEVCSVLQYDEGRTEVR-GDGFQGF--YDGCIMAVHA 188 (602)
Q Consensus 141 a~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~-~~g~~~~--ad~VI~A~p~ 188 (602)
.+.+.+.|.++++++.|.+|..+++.+.+.. .+|+.+. +|++|+||=+
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~ 113 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA 113 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC
Confidence 3445555889999999999998888787765 2354566 9999999944
No 487
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.09 E-value=9.5 Score=32.59 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.5
Q ss_pred ecCchHHHHHHHhc--cC-CEEEEEcCCHHHHHHHHHH
Q 036521 558 GCGWGTFAIEVVRQ--TG-CNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 558 GcG~G~~~~~la~~--~g-~~v~gid~S~~~l~~a~~~ 592 (602)
=||+|.++..+++. .+ .+|+.||.+++..+.+++.
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 38888999988877 34 4899999999998887653
No 488
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=65.91 E-value=16 Score=37.92 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=41.4
Q ss_pred HHHHHccCCCCCeEEEEe--cCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521 541 LQIEKARVSKGHGVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592 (602)
Q Consensus 541 ~l~~~l~l~~g~~vLDiG--cG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~ 592 (602)
.+.+..++++|++||=.| .|-|.+++.+|+..|+.+++++-|++..+++++.
T Consensus 133 ~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l 186 (326)
T COG0604 133 ALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL 186 (326)
T ss_pred HHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc
Confidence 344456788999999999 4688999999999887888888888777766553
No 489
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=65.82 E-value=17 Score=38.27 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=38.6
Q ss_pred HHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
+...+++|++||-.|+|. |..++.+|+..|+ .|++++.+++..+.+++
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 445678899999999874 7777788888888 69999999988877654
No 490
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=65.66 E-value=16 Score=41.25 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEe-CCCc--EEec-CEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVR-GDGF--QGFY-DGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~-~~g~--~~~a-d~VI~A~p~ 188 (602)
..+..+|.+.+.++|.+|+++++|+++..+++.| .|.. .+|+ .+.+ +.||+|+=.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCC
Confidence 3578888888888899999999999988765543 2322 3443 3565 689999833
No 491
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=65.23 E-value=8.5 Score=40.39 Aligned_cols=56 Identities=18% Similarity=0.389 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHH
Q 036521 535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAE 590 (602)
Q Consensus 535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~ 590 (602)
+.+.+..+++.+.+.+++.--|+|+|-|.+....|...+| .-.|+.++..--+.|.
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~ 233 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAE 233 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHH
Confidence 3444567899999999999999999999999998875454 5668887665444443
No 492
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=65.18 E-value=11 Score=37.65 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=37.9
Q ss_pred HHHHHccCCC-CCeEEEEecCchHHHHHHHhc-c--------CCEEEEEcCCHHHHHHHHHHHHH
Q 036521 541 LQIEKARVSK-GHGVLEIGCGWGTFAIEVVRQ-T--------GCNYTGITLSAEQLKYAEMKVNE 595 (602)
Q Consensus 541 ~l~~~l~l~~-g~~vLDiGcG~G~~~~~la~~-~--------g~~v~gid~S~~~l~~a~~~~~~ 595 (602)
...+.++-.. .-+|+|+|.|.|.++..+.+. . ..+++-|++|+.+.+.-+++...
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3445554222 259999999999999887764 1 25899999999998888877654
No 493
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=65.13 E-value=18 Score=40.86 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-E---EEEeCCCc--EEecC-EEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-R---TEVRGDGF--QGFYD-GCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v---~v~~~~g~--~~~ad-~VI~A~p~ 188 (602)
..++..|.+.+.+.|.+|+++++|+++..+++| | .+. .+|+ .+.++ .||+|+=.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~-~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVE-REGRTLRIGARRGVILATGG 273 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEE-eCCcEEEEEeceeEEEecCc
Confidence 456777777776678999999999999986443 3 332 3443 35787 59999844
No 494
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=64.69 E-value=18 Score=38.17 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=38.0
Q ss_pred HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521 543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM 591 (602)
Q Consensus 543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~ 591 (602)
.+...+++|++||=+|+| -|..++.+|+..|+ +|+.++-+++.++.+++
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~ 233 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE 233 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 455678899999999876 34555666777788 89999999988888743
No 495
>PLN02546 glutathione reductase
Probab=64.65 E-value=19 Score=40.49 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecC
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVH 187 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p 187 (602)
..+.+.+.+.|.++|.++++++.|.+|...+++ +.|.+.+++...+|.||+|+.
T Consensus 293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G 347 (558)
T PLN02546 293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATG 347 (558)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeec
Confidence 345566777888889999999999999875444 555555554345899998864
No 496
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=64.51 E-value=5.4 Score=44.03 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCH
Q 036521 548 VSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSA 583 (602)
Q Consensus 548 l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~ 583 (602)
|+++..|||+||-.|+...-+++. .|.-|+||||-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 568889999999999999988887 467899999965
No 497
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=64.41 E-value=50 Score=32.60 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHccCCCCCeEEEEecCchHHHHHHHh-ccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521 540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVR-QTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599 (602)
Q Consensus 540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~-~~g~~v~gid~S~~~l~~a~~~~~~~gl~ 599 (602)
..+.+.-.+ .|++||-+|=.-- .++.+|- ....+|+.+|+++..+++.++.+++.|++
T Consensus 35 ~~~~~~gdL-~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~ 93 (243)
T PF01861_consen 35 ALMAERGDL-EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP 93 (243)
T ss_dssp HHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred HHHHhcCcc-cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence 344544333 6889999995432 2333333 24679999999999999999999999875
No 498
>PRK08401 L-aspartate oxidase; Provisional
Probab=63.82 E-value=18 Score=39.66 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~ 188 (602)
..+.+.|.+.+.+.|.+++.+ .|+.+..+++++. |.. +|+.+.++.||+||=.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG 173 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGG 173 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCc
Confidence 468888888888778898876 7888876655553 333 4557899999999844
No 499
>PRK07512 L-aspartate oxidase; Provisional
Probab=63.70 E-value=16 Score=40.65 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeE---EEEeCCCc-EEecCEEEEecCh
Q 036521 134 HSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGR---TEVRGDGF-QGFYDGCIMAVHA 188 (602)
Q Consensus 134 ~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv---~v~~~~g~-~~~ad~VI~A~p~ 188 (602)
..+.+.|.+.+.++ |.+|+.+++|+.+..+++.| .+...++. .+.++.||+||=-
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCC
Confidence 46788888877654 78999999999987665533 33332332 4789999999843
No 500
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=63.30 E-value=34 Score=35.87 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCh----hhHHhhhHHHHHHHHHh-cCccccCCCCcEEEecCCcHh
Q 036521 61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS----EGIMSFSAFSILSFYRN-HHLLQLFGRPQWLTVRSRSHS 135 (602)
Q Consensus 61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~----~~~~~~p~~~~l~~~~~-~g~~~~~~~~~~~~~~gG~~~ 135 (602)
.+++.|+.||+...-|...|. ++|.-| ++... -++. .|+++++.. .|+-+. . +.-++.-+-..+
T Consensus 160 ~L~~~tI~d~Fse~FF~sNFW-~yW~tm----FAFekWhSa~EmR----RY~mRfihhi~gl~df-s-~lkftkyNQYeS 228 (587)
T COG4716 160 KLDDLTIEDWFSEDFFKSNFW-YYWQTM----FAFEKWHSAFEMR----RYMMRFIHHISGLPDF-S-ALKFTKYNQYES 228 (587)
T ss_pred hcCCccHHHhhhHhhhhhhHH-HHHHHH----HhhhHHHHHHHHH----HHHHHHHHHhcCCCcc-h-hhcccccchHHH
Confidence 468899999998866655554 233323 22221 1222 234444432 222211 1 111233455678
Q ss_pred HHHHHHHHHhcCCCeEEeCCceeEEEec
Q 036521 136 YVNKVIALLESLGCQIKTGCEVCSVLQY 163 (602)
Q Consensus 136 l~~~la~~l~~~g~~v~l~t~V~~i~~~ 163 (602)
++.+|.+.|.++|.++.+++.|..|.-+
T Consensus 229 lvlPli~yL~~H~Vdf~~~~~Vedi~v~ 256 (587)
T COG4716 229 LVLPLITYLKSHGVDFTYDQKVEDIDVD 256 (587)
T ss_pred HHHHHHHHHHHcCCceEeccEEeeeeec
Confidence 9999999999999999999999999754
Done!