BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036522
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80492|P2C05_ARATH Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana
GN=At1g09160 PE=2 SV=1
Length = 428
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/70 (65%), Positives = 56/70 (80%)
Query: 1 MASREGRRHHHDLVPLAALISREMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPG 60
M+ + R H LVPLA LI RE+R+EK+EKP V +GQAA ++KGEDYFLIKTDC+RVPG
Sbjct: 1 MSVSKASRTQHSLVPLATLIGRELRSEKVEKPFVKYGQAALAKKGEDYFLIKTDCERVPG 60
Query: 61 NPSSTFSVFA 70
+PSS FSVF
Sbjct: 61 DPSSAFSVFG 70
>sp|Q9M9C6|P2C15_ARATH Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana
GN=At1g68410 PE=2 SV=1
Length = 436
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 59/75 (78%), Gaps = 5/75 (6%)
Query: 1 MASREGRR--HHHD---LVPLAALISREMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDC 55
MASREG+R H+HD LVPLAALISRE + KMEKP V FGQAAQSRKGEDY LIKTD
Sbjct: 1 MASREGKRRNHNHDDEKLVPLAALISRETKAAKMEKPIVRFGQAAQSRKGEDYVLIKTDS 60
Query: 56 QRVPGNPSSTFSVFA 70
RVP N S+ FSVFA
Sbjct: 61 LRVPSNSSTAFSVFA 75
>sp|Q10MN6|P2C33_ORYSJ Probable protein phosphatase 2C 33 OS=Oryza sativa subsp.
japonica GN=Os03g0301700 PE=2 SV=1
Length = 432
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 42/57 (73%)
Query: 14 VPLAALISREMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFA 70
+PLA LI RE+R E+P V +G +++GEDYFL+K DC RVPG+PSS FSVFA
Sbjct: 15 LPLATLIGRELRGGGSERPLVRYGHFGFAKRGEDYFLVKPDCLRVPGDPSSAFSVFA 71
>sp|Q9FX08|P2C12_ARATH Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana
GN=At1g47380 PE=2 SV=1
Length = 428
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 11 HDLVPLAALISREMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFA 70
H VPL+ L+ RE NEK++ P + GQ QS+KGED+ L+KT+CQRV G+ +TFSVF
Sbjct: 7 HHTVPLSVLLKRESANEKIDNPELIHGQHNQSKKGEDFTLVKTECQRVMGDGVTTFSVFG 66
>sp|Q67J17|P2C69_ORYSJ Probable protein phosphatase 2C 69 OS=Oryza sativa subsp.
japonica GN=Os09g0459600 PE=2 SV=1
Length = 422
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 14 VPLAALISREMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDC-QRVPGNPSSTFSVFA 70
VPL L+ RE+ +E+ME+P+V G+AA+SRKGED+ L+ + +RV G+PS++FSVFA
Sbjct: 10 VPLGVLLRREVTSERMERPDVLCGEAARSRKGEDFTLLLAEAGERVAGDPSTSFSVFA 67
>sp|Q6YTI2|P2C15_ORYSJ Probable protein phosphatase 2C 15 OS=Oryza sativa subsp.
japonica GN=Os02g0567200 PE=2 SV=1
Length = 442
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 14 VPLAALISREMRNEKM--EKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVFA 70
VPLA L+ RE+ +EK E+P + G +Q++KGEDY +K DC+R+PG PSS+FS F
Sbjct: 19 VPLAVLLRREVVSEKTAAERPELQVGLFSQAKKGEDYTFLKPDCERLPGVPSSSFSAFG 77
>sp|Q0JMD4|P2C03_ORYSJ Probable protein phosphatase 2C 3 OS=Oryza sativa subsp. japonica
GN=Os01g0513100 PE=2 SV=2
Length = 485
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 37/95 (38%)
Query: 13 LVPLAALISREMRNEK---------------------------MEKPNVSFGQAAQSRKG 45
LVPLAALI E R E+ +P + +G AAQS+KG
Sbjct: 32 LVPLAALIKEEARAERPMGSGSRICARDEEDGGGGGGAEGGRRWRRPLLRYGCAAQSKKG 91
Query: 46 EDYFLIKTDCQR----------VPGNPSSTFSVFA 70
ED+FL++TDC R + +P TF+VFA
Sbjct: 92 EDFFLLRTDCARPSTSSSSSSSLASSPPHTFAVFA 126
>sp|Q7XTC7|P2C40_ORYSJ Probable protein phosphatase 2C 40 OS=Oryza sativa subsp.
japonica GN=Os04g0449400 PE=2 SV=3
Length = 461
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 27 EKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVP--GNPSSTFSVF 69
E+ +P+V+ GQA +++KGED+ L+K C+R+P G P S F++F
Sbjct: 53 ERERRPSVAAGQACRAKKGEDFALLKPACERLPAGGAPFSAFALF 97
>sp|Q02GN4|NDPA_PSEAB Nucleoid-associated protein PA14_59050 OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=PA14_59050 PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 10 HHDL--VPLAALIS-REMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTF 66
H DL + LAA I+ E RN K K +SF + RK DYF CQ +PS T
Sbjct: 142 HLDLGQLHLAARINISEWRNNKQSKQYISFIKGKGGRKVSDYFRDFIGCQEGVDSPSETR 201
Query: 67 SVF 69
++
Sbjct: 202 TLL 204
>sp|Q9HXF7|NDPA_PSEAE Nucleoid-associated protein PA3849 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA3849 PE=3 SV=1
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 10 HHDL--VPLAALIS-REMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTF 66
H DL + LAA I+ E RN K K +SF + +K DYF CQ +PS T
Sbjct: 142 HLDLGQLHLAARINISEWRNNKQSKQYISFIKGKGGKKVSDYFRDFIGCQEGVDSPSETR 201
Query: 67 SVF 69
++
Sbjct: 202 TLL 204
>sp|B7UUU2|NDPA_PSEA8 Nucleoid-associated protein PLES_11251 OS=Pseudomonas aeruginosa
(strain LESB58) GN=PLES_11251 PE=3 SV=1
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 10 HHDL--VPLAALIS-REMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTF 66
H DL + LAA I+ E RN K K +SF + +K DYF CQ +PS T
Sbjct: 142 HLDLGQLHLAARINISEWRNNKQSKQYISFIKGKGGKKVSDYFRDFIGCQEGVDSPSETR 201
Query: 67 SVF 69
++
Sbjct: 202 TLL 204
>sp|A6V9R6|NDPA_PSEA7 Nucleoid-associated protein PSPA7_4451 OS=Pseudomonas aeruginosa
(strain PA7) GN=PSPA7_4451 PE=3 SV=1
Length = 340
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 10 HHDL--VPLAALIS-REMRNEKMEKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTF 66
H DL + LAA I+ E RN K K +SF + +K DYF CQ +PS T
Sbjct: 142 HLDLAQLHLAARINISEWRNNKQSKQYISFIKGKGGKKVSDYFRDFIGCQEGVDSPSETR 201
Query: 67 SVF 69
++
Sbjct: 202 TLL 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,147,389
Number of Sequences: 539616
Number of extensions: 737990
Number of successful extensions: 1342
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 16
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)