Query 036522
Match_columns 70
No_of_seqs 53 out of 55
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 02:53:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01849 NAC: NAC domain; Int 61.3 5.6 0.00012 23.1 1.4 26 43-70 27-52 (58)
2 PF10260 SAYSvFN: Uncharacteri 54.3 3.7 7.9E-05 26.0 -0.3 14 48-61 47-60 (71)
3 PF04491 Pox_T4_N: Poxvirus T4 31.3 47 0.001 19.9 2.0 16 46-61 13-28 (46)
4 PF05688 DUF824: Salmonella re 30.1 33 0.00072 20.1 1.2 18 38-55 5-24 (47)
5 PRK06369 nac nascent polypepti 28.5 37 0.0008 23.2 1.4 26 43-70 33-60 (115)
6 KOG1755 Profilin [Cytoskeleton 26.1 49 0.0011 23.1 1.7 39 30-69 52-90 (128)
7 PF11974 MG1: Alpha-2-macroglo 25.7 47 0.001 21.0 1.4 14 40-53 66-79 (97)
8 TIGR03171 soxL2 Rieske iron-su 22.0 39 0.00085 26.8 0.6 36 16-51 15-50 (321)
9 KOG0698 Serine/threonine prote 21.8 69 0.0015 23.9 1.9 34 36-69 45-81 (330)
10 PRK14553 hypothetical protein; 20.7 41 0.00089 21.7 0.4 16 34-49 17-32 (108)
No 1
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=61.34 E-value=5.6 Score=23.09 Aligned_cols=26 Identities=31% Similarity=0.654 Sum_probs=21.7
Q ss_pred ccCCceEEeecCCccccCCCCCceeeeC
Q 036522 43 RKGEDYFLIKTDCQRVPGNPSSTFSVFA 70 (70)
Q Consensus 43 KKgEDf~Llk~dC~Rvpgd~sstfsvFa 70 (70)
..|..|.+-.|+.+..+| +.||-|||
T Consensus 27 ~dg~~~~~~~P~V~~~~~--~~tyvV~G 52 (58)
T PF01849_consen 27 DDGTVFVFNNPEVQKSPG--SNTYVVFG 52 (58)
T ss_dssp TTTEEEEEESEEEEEETT--CCEEEEES
T ss_pred CCceEEEEcCCeEEEcCC--CCEEEEEe
Confidence 456889999999998876 67999986
No 2
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=54.34 E-value=3.7 Score=26.01 Aligned_cols=14 Identities=36% Similarity=1.058 Sum_probs=6.6
Q ss_pred eEEeecCCccccCC
Q 036522 48 YFLIKTDCQRVPGN 61 (70)
Q Consensus 48 f~Llk~dC~Rvpgd 61 (70)
|-+--++|+|++|+
T Consensus 47 YSVFN~~~~~i~Gt 60 (71)
T PF10260_consen 47 YSVFNKGCERIPGT 60 (71)
T ss_pred hhhhCCCccccCCC
Confidence 33444455555554
No 3
>PF04491 Pox_T4_N: Poxvirus T4 protein, N terminus; InterPro: IPR007580 Poxvirus T4 protein is thought to be secreted or retained in the endoplasmic reticulum if the protein also contains an additional C-terminal region (IPR007579 from INTERPRO). M-T4 of myxoma virus (O55698 from SWISSPROT) is thought to protect infected lymphocytes from apoptosis and modulate the inflammatory response to virus infection [].
Probab=31.34 E-value=47 Score=19.87 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=12.7
Q ss_pred CceEEeecCCccccCC
Q 036522 46 EDYFLIKTDCQRVPGN 61 (70)
Q Consensus 46 EDf~Llk~dC~Rvpgd 61 (70)
+||..-+|+|.|.-|.
T Consensus 13 k~f~~~~t~C~~~~~~ 28 (46)
T PF04491_consen 13 KDFKSSRTGCHRPQGP 28 (46)
T ss_pred eeEEeecCCcccccCC
Confidence 7999999999665543
No 4
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=30.14 E-value=33 Score=20.05 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=14.2
Q ss_pred hhhccccCCceEEeec--CC
Q 036522 38 QAAQSRKGEDYFLIKT--DC 55 (70)
Q Consensus 38 qa~qsKKgEDf~Llk~--dC 55 (70)
+|..+||||.-.|..+ ||
T Consensus 5 ~aakaK~Ge~I~ltVt~kda 24 (47)
T PF05688_consen 5 NAAKAKVGETIPLTVTVKDA 24 (47)
T ss_pred hhhheecCCeEEEEEEEECC
Confidence 4789999999877654 66
No 5
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=28.47 E-value=37 Score=23.18 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=20.6
Q ss_pred ccCCceEEeecCCc--cccCCCCCceeeeC
Q 036522 43 RKGEDYFLIKTDCQ--RVPGNPSSTFSVFA 70 (70)
Q Consensus 43 KKgEDf~Llk~dC~--Rvpgd~sstfsvFa 70 (70)
+++++|++-+|+-. +.+| +.||-|||
T Consensus 33 ~~~~~~Vi~~P~V~~m~~~g--~~tY~I~G 60 (115)
T PRK06369 33 LKDKEIVFENPQVTVMDAQG--QKTYQIVG 60 (115)
T ss_pred eCCEEEEEcCCeEEEEecCC--CcEEEEEe
Confidence 45589999999998 5555 58999996
No 6
>KOG1755 consensus Profilin [Cytoskeleton]
Probab=26.14 E-value=49 Score=23.10 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=28.5
Q ss_pred cCcchhhhhhhccccCCceEEeecCCccccCCCCCceeee
Q 036522 30 EKPNVSFGQAAQSRKGEDYFLIKTDCQRVPGNPSSTFSVF 69 (70)
Q Consensus 30 ErP~v~~Gqa~qsKKgEDf~Llk~dC~Rvpgd~sstfsvF 69 (70)
+.|.-.++. +..=.|.+|.++..||.|+.+...-|+.|+
T Consensus 52 ~d~~~~~~~-Gl~L~Gqkylv~~ge~~~~~~gk~~~~gv~ 90 (128)
T KOG1755|consen 52 KDPGGLAGT-GLTLGGQKYLVVRGEEGRVIRGKEGTGGVT 90 (128)
T ss_pred cCccccccc-ceeecccEEEEEecccceEEecccCCCcEE
Confidence 445545555 666678889999999999987766666654
No 7
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=25.73 E-value=47 Score=20.97 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.7
Q ss_pred hccccCCceEEeec
Q 036522 40 AQSRKGEDYFLIKT 53 (70)
Q Consensus 40 ~qsKKgEDf~Llk~ 53 (70)
-.+++|+|+.+|+.
T Consensus 66 viA~~~~d~s~l~l 79 (97)
T PF11974_consen 66 VIARKGGDFSFLPL 79 (97)
T ss_pred EEEEECCcEEEEEc
Confidence 34669999999998
No 8
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=21.96 E-value=39 Score=26.80 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=25.9
Q ss_pred HHHHHhHHhhhhhhcCcchhhhhhhccccCCceEEe
Q 036522 16 LAALISREMRNEKMEKPNVSFGQAAQSRKGEDYFLI 51 (70)
Q Consensus 16 La~Ll~rEl~~e~~ErP~v~~Gqa~qsKKgEDf~Ll 51 (70)
-++|+.-----.||..|--+|-.--+.+|||||..-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (321)
T TIGR03171 15 YSDLYFIRKLLAKMRDPKTKFDSREFVNKGEDYLFN 50 (321)
T ss_pred hhHhHHHHHHHHHhcCCcccccHHHHHhhhhHHHhh
Confidence 344444333345678888899999999999999763
No 9
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=21.79 E-value=69 Score=23.95 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=24.6
Q ss_pred hhhhhccccCCceEEeecCCccccCCCC---Cceeee
Q 036522 36 FGQAAQSRKGEDYFLIKTDCQRVPGNPS---STFSVF 69 (70)
Q Consensus 36 ~Gqa~qsKKgEDf~Llk~dC~Rvpgd~s---stfsvF 69 (70)
+.+-+...++||+...++++...+..+. .-|+||
T Consensus 45 ~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVf 81 (330)
T KOG0698|consen 45 LSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVF 81 (330)
T ss_pred EecCCCCCccCcceeecccccccccCCCCceEEEEEE
Confidence 3445556789999999999997665544 456666
No 10
>PRK14553 hypothetical protein; Provisional
Probab=20.69 E-value=41 Score=21.69 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.2
Q ss_pred hhhhhhhccccCCceE
Q 036522 34 VSFGQAAQSRKGEDYF 49 (70)
Q Consensus 34 v~~Gqa~qsKKgEDf~ 49 (70)
..-|||+.+++|+|-+
T Consensus 17 ~i~GHA~~~~~G~DIV 32 (108)
T PRK14553 17 TMSGHAGSGEHGQDIV 32 (108)
T ss_pred EEEeCCCCCCCCCcEE
Confidence 4569999999999943
Done!