Query 036522
Match_columns 70
No_of_seqs 53 out of 55
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mcb_A Nascent polypeptide-ass 52.4 6 0.00021 22.9 1.3 26 43-70 21-46 (54)
2 3mce_A Nascent polypeptide-ass 41.0 9.1 0.00031 22.7 0.9 27 42-70 26-52 (61)
3 1of5_B MTR2, YKL186C, mRNA tra 38.1 6 0.0002 28.2 -0.3 21 33-53 101-121 (184)
4 1tr8_A Conserved protein (MTH1 32.6 14 0.00049 23.3 0.9 26 43-70 24-51 (102)
5 4dvc_A Thiol:disulfide interch 14.2 61 0.0021 19.3 1.0 16 38-53 2-17 (184)
6 4e6k_G BFD, bacterioferritin-a 13.6 83 0.0028 18.4 1.5 26 16-41 45-70 (73)
7 1z21_A YOP proteins translocat 12.6 86 0.0029 20.8 1.4 15 12-26 92-106 (112)
8 2idl_A Hypothetical protein; c 12.3 40 0.0014 21.1 -0.3 15 34-48 21-35 (117)
9 2pk0_A Serine/threonine protei 11.6 1.2E+02 0.004 19.4 1.8 24 31-54 3-30 (250)
10 2hjm_A Hypothetical protein PF 11.4 22 0.00074 23.4 -1.8 17 33-49 32-48 (103)
No 1
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=52.39 E-value=6 Score=22.87 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=21.5
Q ss_pred ccCCceEEeecCCccccCCCCCceeeeC
Q 036522 43 RKGEDYFLIKTDCQRVPGNPSSTFSVFA 70 (70)
Q Consensus 43 KKgEDf~Llk~dC~Rvpgd~sstfsvFa 70 (70)
.|+--|.+-+||-++.|+ |.||-|||
T Consensus 21 ~~~~lf~i~~P~V~ksp~--s~TyvVfG 46 (54)
T 3mcb_A 21 SKNILFVITKPDVYKSPA--SDTYIVFG 46 (54)
T ss_dssp SSSEEEEESSCEEEECTT--SSEEEEES
T ss_pred CCCEEEEECCCcEEEcCC--CCeEEEEc
Confidence 466788999999999885 56999996
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=41.01 E-value=9.1 Score=22.71 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=19.8
Q ss_pred cccCCceEEeecCCccccCCCCCceeeeC
Q 036522 42 SRKGEDYFLIKTDCQRVPGNPSSTFSVFA 70 (70)
Q Consensus 42 sKKgEDf~Llk~dC~Rvpgd~sstfsvFa 70 (70)
-.|+--|.+-+||-++.|+ |.||-||+
T Consensus 26 K~~~~lf~i~~PdV~ksp~--snTyvVFG 52 (61)
T 3mce_A 26 KSKNILFVITKPDVYKSPA--SDTYIVFG 52 (61)
T ss_dssp ETTTEEEEESSCEEEEC-----CEEEEES
T ss_pred ecCCEEEEECCCcEEEcCC--CCeEEEEc
Confidence 3467789999999999885 45999996
No 3
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=38.10 E-value=6 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=4.0
Q ss_pred chhhhhhhccccCCceEEeec
Q 036522 33 NVSFGQAAQSRKGEDYFLIKT 53 (70)
Q Consensus 33 ~v~~Gqa~qsKKgEDf~Llk~ 53 (70)
.|+||+....|-||||+|+-.
T Consensus 101 kVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 101 KVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp EEECC----------------
T ss_pred EEEECCCCCCCCCCeEEECCC
Confidence 388999998999999999843
No 4
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=32.62 E-value=14 Score=23.35 Aligned_cols=26 Identities=15% Similarity=0.246 Sum_probs=20.6
Q ss_pred ccCCceEEeecCCcc--ccCCCCCceeeeC
Q 036522 43 RKGEDYFLIKTDCQR--VPGNPSSTFSVFA 70 (70)
Q Consensus 43 KKgEDf~Llk~dC~R--vpgd~sstfsvFa 70 (70)
|+...|.+-+|+=++ .|| +.||.|||
T Consensus 24 k~d~~iv~~~P~V~~~~~~~--~~Ty~I~G 51 (102)
T 1tr8_A 24 LKRKEIIIKNPKVNVMEFMG--QKTYQVTG 51 (102)
T ss_dssp CSSEEEEEESCEEEEEEETT--EEEEEEES
T ss_pred eCCEEEEECCCEEEEEcCCC--CcEEEEEc
Confidence 334789999999987 565 78999996
No 5
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=14.23 E-value=61 Score=19.28 Aligned_cols=16 Identities=50% Similarity=0.738 Sum_probs=13.0
Q ss_pred hhhccccCCceEEeec
Q 036522 38 QAAQSRKGEDYFLIKT 53 (70)
Q Consensus 38 qa~qsKKgEDf~Llk~ 53 (70)
+|.+-+-|.||.+|..
T Consensus 2 ~Aa~~~eG~~Y~vl~~ 17 (184)
T 4dvc_A 2 NAAQFKEGEHYQVLKT 17 (184)
T ss_dssp CCCCCCBTTTEEECSS
T ss_pred CcccccCCCCcEECCC
Confidence 5778899999988764
No 6
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=13.59 E-value=83 Score=18.42 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=10.3
Q ss_pred HHHHHhHHhhhhhhcCcchhhhhhhc
Q 036522 16 LAALISREMRNEKMEKPNVSFGQAAQ 41 (70)
Q Consensus 16 La~Ll~rEl~~e~~ErP~v~~Gqa~q 41 (70)
+..||.+|+.......|.+.||-+.+
T Consensus 45 i~~il~~~~~~~~~~~~~~~~~~~~~ 70 (73)
T 4e6k_G 45 AKQVVRETLNDLQSAQPVPAFGTTAF 70 (73)
T ss_dssp HHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHhhcccccccccccchhh
Confidence 56788888888778888888887654
No 7
>1z21_A YOP proteins translocation protein H; plague, type III secretion, YOPR, cell invasion; 1.50A {Yersinia pestis} SCOP: a.243.1.2
Probab=12.59 E-value=86 Score=20.82 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=11.1
Q ss_pred CcccHHHHHhHHhhh
Q 036522 12 DLVPLAALISREMRN 26 (70)
Q Consensus 12 ~~VpLa~Ll~rEl~~ 26 (70)
+.-=|+.|++|||+.
T Consensus 92 g~eyL~~LaRrELmt 106 (112)
T 1z21_A 92 GLPYLSELINKELMI 106 (112)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 344589999999864
No 8
>2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2, MAD, structural genomics structure initiative; 1.70A {Streptococcus pneumoniae} SCOP: d.64.2.1
Probab=12.26 E-value=40 Score=21.10 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=12.2
Q ss_pred hhhhhhhccccCCce
Q 036522 34 VSFGQAAQSRKGEDY 48 (70)
Q Consensus 34 v~~Gqa~qsKKgEDf 48 (70)
..-|||+.+.+|+|-
T Consensus 21 ~v~GHA~~ae~G~DI 35 (117)
T 2idl_A 21 EITGHAESGEYGLDV 35 (117)
T ss_dssp EEESCSSCCCSSHHH
T ss_pred EEEeCCCCCCCCCcE
Confidence 456999999999984
No 9
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=11.56 E-value=1.2e+02 Score=19.41 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=15.5
Q ss_pred Ccchhhhhh---hc-cccCCceEEeecC
Q 036522 31 KPNVSFGQA---AQ-SRKGEDYFLIKTD 54 (70)
Q Consensus 31 rP~v~~Gqa---~q-sKKgEDf~Llk~d 54 (70)
|+.+.||.+ +. -+..||++++...
T Consensus 3 k~~~~~~~~s~~G~~r~~neD~~~~~~~ 30 (250)
T 2pk0_A 3 KKYMEISLLTDIGQRRSNNQDFINQFEN 30 (250)
T ss_dssp CCCEEEEEEEECCTTCSCCCEEEEEEEC
T ss_pred cceEEEEEecCCCCCCCcCCCceEeccC
Confidence 455556544 33 5679999987654
No 10
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=11.41 E-value=22 Score=23.43 Aligned_cols=17 Identities=12% Similarity=0.399 Sum_probs=12.1
Q ss_pred chhhhhhhccccCCceE
Q 036522 33 NVSFGQAAQSRKGEDYF 49 (70)
Q Consensus 33 ~v~~Gqa~qsKKgEDf~ 49 (70)
.|.--.--.+||||||+
T Consensus 32 Fi~Ln~glEskrGe~Fv 48 (103)
T 2hjm_A 32 FITLTHGIEKTRGEAFA 48 (103)
T ss_dssp HHHTTSHHHHHHCHHHH
T ss_pred HHHHhhhHhhhchHHHH
Confidence 34455556789999995
Done!