BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036523
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 129/301 (42%), Gaps = 54/301 (17%)
Query: 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTG 194
+K RP + FL++ ++Y+++I TMG + YA+ +AK++DP + + R+++ +D
Sbjct: 74 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLF-QDRVLSRDDSGSLA 132
Query: 195 KKNLDLVLGQERG-VVIVDDTAEVWKDHKENLILVGKYNYF------------------- 234
+K+L + + VV++DD +VW D NLI V Y +F
Sbjct: 133 QKSLRRLFPCDTSMVVVIDDRGDVW-DWNPNLIKVVPYEFFVGIGDINSNFLSGNREALE 191
Query: 235 ---KERI-----RKSKNNDQKSYSERKSDESELNGA----------LVNVLRVLKRVHEL 276
KER+ +KS+ K + DE + + L + +VLK +H +
Sbjct: 192 EQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAV 251
Query: 277 FFENPENLV-------WGDVRSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLR----RRA 325
++E ++ +V + K+++++L GC L F+ V P +L + A
Sbjct: 252 YYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFS--GVIPLGVDVLSSDIAKWA 309
Query: 326 EELGAACXXXXXXXXXXXXXXRQATEGRRLAEQHNNF-LVHPRWIYAAYYLWSRQAENDY 384
GA + TE + A N +V W+ + W R E+DY
Sbjct: 310 MSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDY 369
Query: 385 F 385
Sbjct: 370 L 370
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTG 194
+K RP + FL++ ++Y+++I TMG + YA+ +AK++DP + + R+++ +D
Sbjct: 82 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLF-QDRVLSRDDSGSLA 140
Query: 195 KKNLDLVLGQERG-VVIVDDTAEVWKDHKENLILVGKYNYF 234
+K+L + + VV++DD +VW D NLI V Y +F
Sbjct: 141 QKSLRRLFPCDTSMVVVIDDRGDVW-DWNPNLIKVVPYEFF 180
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RPY+ FL+ ++++ + T YA+ + LLD +C + +RL +C +
Sbjct: 59 RPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVF-RARLFRESCVFHQGCYV 116
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R +I+D++ + H EN + V +
Sbjct: 117 KDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSW 152
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LLD + +RL +C +
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF--RARLFRESCVFHRGNYV 114
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R V+I+D++ + H +N + V +
Sbjct: 115 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW 150
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LLD + +RL +C +
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF--RARLFRESCVFHRGNYV 117
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R V+I+D++ + H +N + V +
Sbjct: 118 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW 153
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LLD + +RL +C +
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF--RARLFRESCVFHRGNYV 114
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R V+I+D++ + H +N + V +
Sbjct: 115 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW 150
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LLD + +RL +C +
Sbjct: 56 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF--RARLFRESCVFHRGNYV 113
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R V+I+D++ + H +N + V +
Sbjct: 114 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW 149
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LLD + +RL +C +
Sbjct: 70 RPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVF--RARLFRESCVFHRGNYV 127
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + + V+IVD++ + H EN + V +
Sbjct: 128 KDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSW 163
>pdb|3SHQ|A Chain A, Crystal Structure Of Ublcp1
Length = 320
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 137 LRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLL------DPKCEYYISSRLITCEDF 190
+RPY+ FL A + YDI I + + + E +LL + K +Y+ S +
Sbjct: 165 MRPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMIS--- 221
Query: 191 KDTGKKNLDLVLGQERGVVIVDDTAEVWKDHKE 223
V ERGVV V +W +K+
Sbjct: 222 ----------VHVPERGVVDVKPLGVIWALYKQ 244
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI----TCED---F 190
RP FL + Y+I + + Y++ IA+ LDP ++S L +D
Sbjct: 61 RPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDP-IHAFVSYNLFKEHCVYKDGVHI 119
Query: 191 KDTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKYN 232
KD K N DL V+I+D +K EN I + +N
Sbjct: 120 KDLSKLNRDL-----SKVIIIDTDPNSYKLQPENAIPMEPWN 156
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LD + +RL +C +
Sbjct: 57 RPHVDEFLQRXGELFECVLFTASLAKYADPVADXLDKWGAF--RARLFRESCVFHRGNYV 114
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R V+I D++ + H +N + V +
Sbjct: 115 KDLSRLGRDLRRVLIXDNSPASYVFHPDNAVPVASW 150
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 278 FENPENLVW-GDVRSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELG 329
+ P+N+ + GD +SFL IR+ + A + + G F LLR+ A E G
Sbjct: 303 LKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQG------FMLLRQAATEFG 349
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LLD + +RL +C +
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF--RARLFRESCVFHRGNYV 117
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R V+I+ ++ + H +N + V +
Sbjct: 118 KDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASW 153
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 138 RPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI--TCEDFKDTGK 195
RP++ FL+ ++++ + T YA+ +A LLD + +RL +C +
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAF--RARLFRESCVFHRGNYV 117
Query: 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231
K+L + R V+I+ ++ + H +N + V +
Sbjct: 118 KDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASW 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,066,260
Number of Sequences: 62578
Number of extensions: 370032
Number of successful extensions: 834
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 16
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)