Query 036523
Match_columns 387
No_of_seqs 339 out of 1522
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 1.1E-64 2.5E-69 523.1 15.6 357 27-385 88-529 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 3.6E-38 7.9E-43 279.3 14.2 153 79-234 1-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 1.2E-35 2.6E-40 280.7 9.7 173 78-296 83-259 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.1E-33 2.4E-38 252.4 15.6 156 84-275 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 1.2E-32 2.6E-37 243.9 14.0 156 85-290 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 100.0 2E-29 4.4E-34 230.1 14.0 159 78-295 15-190 (195)
7 smart00577 CPDc catalytic doma 99.9 2.8E-24 6E-29 188.8 12.7 142 83-235 1-145 (148)
8 KOG2832 TFIIF-interacting CTD 99.9 1.7E-24 3.6E-29 209.0 10.0 157 81-298 186-345 (393)
9 COG5190 FCP1 TFIIF-interacting 99.8 5.9E-21 1.3E-25 189.2 6.1 290 62-371 4-350 (390)
10 COG5190 FCP1 TFIIF-interacting 99.8 3.5E-20 7.5E-25 183.8 7.5 170 80-295 208-380 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.5 1E-14 2.3E-19 109.5 5.6 63 304-368 1-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 99.5 6.6E-14 1.4E-18 108.3 8.3 75 297-373 2-78 (78)
13 smart00292 BRCT breast cancer 99.3 3.6E-12 7.7E-17 97.5 8.2 77 299-376 1-80 (80)
14 cd00027 BRCT Breast Cancer Sup 99.3 5.2E-12 1.1E-16 94.4 8.5 71 303-374 1-72 (72)
15 KOG3226 DNA repair protein [Re 99.3 1.5E-12 3.2E-17 126.1 5.4 87 297-385 314-400 (508)
16 PLN03122 Poly [ADP-ribose] pol 98.8 8.4E-09 1.8E-13 111.7 8.5 88 296-386 185-277 (815)
17 PLN03123 poly [ADP-ribose] pol 98.7 1.6E-08 3.5E-13 111.7 7.8 88 296-385 389-479 (981)
18 PRK14350 ligA NAD-dependent DN 98.4 8.7E-07 1.9E-11 95.1 9.6 73 299-372 592-664 (669)
19 PRK07956 ligA NAD-dependent DN 98.3 4.6E-06 9.9E-11 89.8 12.0 87 287-374 566-663 (665)
20 COG0272 Lig NAD-dependent DNA 98.3 2.7E-06 6E-11 89.7 9.6 72 299-371 593-664 (667)
21 PRK14351 ligA NAD-dependent DN 98.3 4.9E-06 1.1E-10 89.7 11.5 75 299-374 608-683 (689)
22 TIGR01993 Pyr-5-nucltdase pyri 98.3 3.8E-07 8.2E-12 82.2 2.1 88 135-227 83-180 (184)
23 TIGR01685 MDP-1 magnesium-depe 98.2 2.9E-06 6.4E-11 76.6 7.0 133 86-229 4-154 (174)
24 TIGR01681 HAD-SF-IIIC HAD-supe 98.2 1.2E-06 2.5E-11 75.1 3.7 80 136-217 29-120 (128)
25 PRK06063 DNA polymerase III su 98.2 5.4E-06 1.2E-10 81.7 7.8 71 300-372 232-304 (313)
26 PRK13288 pyrophosphatase PpaX; 98.1 1.3E-06 2.7E-11 80.7 3.1 92 134-228 80-178 (214)
27 PLN03243 haloacid dehalogenase 98.1 1.1E-06 2.4E-11 84.3 2.6 93 134-229 107-206 (260)
28 TIGR01684 viral_ppase viral ph 98.1 7.6E-06 1.6E-10 79.2 7.8 77 78-190 120-198 (301)
29 PHA03398 viral phosphatase sup 98.1 9.4E-06 2E-10 78.6 8.4 77 78-190 122-200 (303)
30 PRK06195 DNA polymerase III su 98.1 1.2E-05 2.7E-10 79.0 8.1 72 299-371 219-304 (309)
31 PRK13226 phosphoglycolate phos 98.0 4.1E-06 8.9E-11 78.5 3.6 92 134-228 93-191 (229)
32 PLN02575 haloacid dehalogenase 98.0 3.6E-06 7.8E-11 84.7 3.2 91 135-228 215-312 (381)
33 TIGR00575 dnlj DNA ligase, NAD 98.0 1.3E-05 2.8E-10 86.2 7.5 68 300-368 584-651 (652)
34 cd01427 HAD_like Haloacid deha 98.0 1.8E-05 4E-10 65.7 6.7 102 86-217 1-125 (139)
35 COG5275 BRCT domain type II [G 97.9 2.2E-05 4.8E-10 71.8 6.7 79 293-372 149-228 (276)
36 PRK13225 phosphoglycolate phos 97.9 3.4E-06 7.4E-11 81.5 1.1 92 134-228 140-235 (273)
37 KOG3524 Predicted guanine nucl 97.9 5.5E-06 1.2E-10 86.7 2.0 80 298-384 116-195 (850)
38 TIGR01662 HAD-SF-IIIA HAD-supe 97.9 2.5E-05 5.3E-10 66.6 5.6 109 86-227 2-126 (132)
39 TIGR01656 Histidinol-ppas hist 97.9 1.4E-05 3E-10 69.8 4.2 116 86-227 2-140 (147)
40 KOG1929 Nucleotide excision re 97.9 2.3E-05 5E-10 85.0 6.4 98 286-385 89-187 (811)
41 KOG1929 Nucleotide excision re 97.8 1.1E-05 2.5E-10 87.4 3.8 98 287-386 480-577 (811)
42 PHA02530 pseT polynucleotide k 97.8 1.8E-05 4E-10 76.8 4.7 122 82-228 156-292 (300)
43 TIGR01672 AphA HAD superfamily 97.8 1.9E-05 4.2E-10 74.8 4.7 139 78-227 57-206 (237)
44 PHA02597 30.2 hypothetical pro 97.8 5.7E-06 1.2E-10 75.3 0.0 94 134-231 72-173 (197)
45 TIGR01686 FkbH FkbH-like domai 97.8 3.2E-05 7E-10 76.3 5.3 110 83-218 2-116 (320)
46 TIGR01261 hisB_Nterm histidino 97.7 5.6E-05 1.2E-09 67.4 5.9 119 85-231 2-146 (161)
47 TIGR01664 DNA-3'-Pase DNA 3'-p 97.7 8.8E-05 1.9E-09 66.4 6.5 102 84-215 13-137 (166)
48 KOG0966 ATP-dependent DNA liga 97.6 0.00015 3.2E-09 77.4 8.1 85 298-383 631-718 (881)
49 PRK08942 D,D-heptose 1,7-bisph 97.6 0.0002 4.4E-09 64.5 7.8 113 84-227 3-142 (181)
50 PF05152 DUF705: Protein of un 97.6 0.00032 7E-09 67.3 9.1 78 78-190 116-194 (297)
51 KOG4362 Transcriptional regula 97.6 0.00011 2.3E-09 78.0 6.3 79 303-386 478-562 (684)
52 COG0637 Predicted phosphatase/ 97.6 2.1E-05 4.6E-10 73.6 0.9 95 134-231 84-185 (221)
53 TIGR00213 GmhB_yaeD D,D-heptos 97.6 0.00013 2.9E-09 65.5 6.1 88 135-227 25-145 (176)
54 TIGR00338 serB phosphoserine p 97.5 0.00012 2.5E-09 67.7 5.2 93 134-228 83-191 (219)
55 KOG2043 Signaling protein SWIF 97.5 0.00015 3.2E-09 80.0 6.2 78 304-386 660-738 (896)
56 KOG2481 Protein required for n 97.5 9.8E-05 2.1E-09 75.3 4.1 81 298-386 325-415 (570)
57 COG4996 Predicted phosphatase 97.5 0.00061 1.3E-08 58.2 8.1 130 86-231 2-145 (164)
58 TIGR01489 DKMTPPase-SF 2,3-dik 97.5 0.0002 4.4E-09 63.9 5.6 81 135-218 71-175 (188)
59 PRK11009 aphA acid phosphatase 97.4 0.0003 6.4E-09 66.7 6.2 140 79-227 58-206 (237)
60 PRK08238 hypothetical protein; 97.3 0.00061 1.3E-08 71.0 8.3 89 135-231 71-167 (479)
61 PF13419 HAD_2: Haloacid dehal 97.3 0.00012 2.6E-09 63.8 2.6 91 133-226 74-171 (176)
62 PRK09552 mtnX 2-hydroxy-3-keto 97.3 0.00047 1E-08 64.0 6.2 94 134-228 72-183 (219)
63 TIGR02253 CTE7 HAD superfamily 97.2 0.00028 6E-09 65.1 3.3 91 134-227 92-190 (221)
64 PF12689 Acid_PPase: Acid Phos 97.2 0.00047 1E-08 62.0 4.3 123 84-218 3-137 (169)
65 KOG3109 Haloacid dehalogenase- 97.1 0.00026 5.7E-09 65.5 2.5 84 135-222 99-195 (244)
66 PLN02770 haloacid dehalogenase 97.1 0.00045 9.8E-09 65.6 3.7 93 134-229 106-205 (248)
67 TIGR01449 PGP_bact 2-phosphogl 97.1 0.00067 1.5E-08 62.1 4.5 95 134-231 83-184 (213)
68 TIGR01454 AHBA_synth_RP 3-amin 97.0 0.00058 1.3E-08 62.5 3.9 93 134-229 73-172 (205)
69 COG0546 Gph Predicted phosphat 97.0 0.00042 9.2E-09 64.6 3.0 90 135-227 88-184 (220)
70 TIGR01533 lipo_e_P4 5'-nucleot 97.0 0.0024 5.2E-08 61.6 7.9 117 81-218 72-201 (266)
71 TIGR01428 HAD_type_II 2-haloal 97.0 0.00053 1.2E-08 62.3 3.2 90 135-227 91-187 (198)
72 TIGR01509 HAD-SF-IA-v3 haloaci 97.0 0.0007 1.5E-08 60.1 3.9 88 135-226 84-178 (183)
73 TIGR02254 YjjG/YfnB HAD superf 97.0 0.00063 1.4E-08 62.6 3.6 92 134-228 95-194 (224)
74 PRK06769 hypothetical protein; 96.9 0.0012 2.6E-08 59.3 5.1 88 135-228 27-133 (173)
75 KOG3548 DNA damage checkpoint 96.8 0.0011 2.5E-08 71.7 4.4 85 298-385 923-1034(1176)
76 PRK09449 dUMP phosphatase; Pro 96.8 0.00098 2.1E-08 61.7 3.4 90 135-227 94-191 (224)
77 COG5163 NOP7 Protein required 96.8 0.0013 2.9E-08 65.3 4.3 91 288-386 335-439 (591)
78 TIGR01668 YqeG_hyp_ppase HAD s 96.7 0.0018 3.9E-08 58.1 4.5 108 79-227 20-131 (170)
79 PRK14988 GMP/IMP nucleotidase; 96.7 0.0012 2.5E-08 61.9 3.4 90 135-227 92-188 (224)
80 PRK10826 2-deoxyglucose-6-phos 96.7 0.0012 2.6E-08 61.2 2.9 91 135-228 91-188 (222)
81 PRK10563 6-phosphogluconate ph 96.6 0.00083 1.8E-08 62.1 1.7 92 134-229 86-183 (221)
82 TIGR01422 phosphonatase phosph 96.6 0.0019 4.1E-08 61.2 3.9 92 135-228 98-197 (253)
83 TIGR01663 PNK-3'Pase polynucle 96.6 0.0041 8.9E-08 65.4 6.6 107 81-215 165-294 (526)
84 PRK10725 fructose-1-P/6-phosph 96.6 0.0016 3.5E-08 58.4 3.0 90 135-228 87-182 (188)
85 PLN02954 phosphoserine phospha 96.5 0.0022 4.8E-08 59.3 3.9 50 135-185 83-134 (224)
86 PRK05446 imidazole glycerol-ph 96.5 0.0059 1.3E-07 61.2 6.4 122 83-232 1-151 (354)
87 PRK13222 phosphoglycolate phos 96.4 0.0033 7.2E-08 57.9 3.8 91 134-227 91-188 (226)
88 PRK09456 ?-D-glucose-1-phospha 96.4 0.0018 3.8E-08 59.1 1.9 97 133-231 81-184 (199)
89 COG2179 Predicted hydrolase of 96.3 0.0088 1.9E-07 53.3 5.8 123 69-231 13-140 (175)
90 PRK11587 putative phosphatase; 96.3 0.0044 9.6E-08 57.3 4.2 91 134-228 81-178 (218)
91 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.2 0.0052 1.1E-07 58.0 4.5 98 79-215 4-105 (242)
92 TIGR03351 PhnX-like phosphonat 96.2 0.0034 7.3E-08 57.9 3.1 92 135-228 86-186 (220)
93 TIGR02009 PGMB-YQAB-SF beta-ph 96.2 0.0022 4.8E-08 57.2 1.8 88 135-227 87-181 (185)
94 PRK13223 phosphoglycolate phos 96.2 0.0043 9.3E-08 59.8 3.5 90 135-227 100-196 (272)
95 COG1011 Predicted hydrolase (H 96.1 0.0063 1.4E-07 56.1 4.4 82 134-218 97-184 (229)
96 TIGR01670 YrbI-phosphatas 3-de 96.0 0.0064 1.4E-07 53.5 3.7 86 135-228 29-115 (154)
97 TIGR01691 enolase-ppase 2,3-di 96.0 0.008 1.7E-07 56.3 4.3 92 134-228 93-192 (220)
98 PRK13478 phosphonoacetaldehyde 95.9 0.0091 2E-07 57.1 4.3 92 135-228 100-199 (267)
99 PLN02779 haloacid dehalogenase 95.8 0.007 1.5E-07 58.8 3.4 93 135-229 143-243 (286)
100 TIGR01548 HAD-SF-IA-hyp1 haloa 95.8 0.013 2.8E-07 53.2 4.9 78 136-216 106-189 (197)
101 TIGR01990 bPGM beta-phosphoglu 95.8 0.0051 1.1E-07 54.8 2.1 88 135-227 86-180 (185)
102 PLN02940 riboflavin kinase 95.8 0.006 1.3E-07 61.8 2.7 92 134-228 91-190 (382)
103 COG0560 SerB Phosphoserine pho 95.7 0.021 4.6E-07 53.2 5.9 49 135-185 76-125 (212)
104 TIGR01549 HAD-SF-IA-v1 haloaci 95.7 0.017 3.7E-07 50.0 4.9 78 134-216 62-145 (154)
105 PF08645 PNK3P: Polynucleotide 95.7 0.013 2.9E-07 52.0 4.2 52 86-160 2-54 (159)
106 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.5 0.014 3.1E-07 52.6 4.1 92 135-228 79-186 (201)
107 TIGR02252 DREG-2 REG-2-like, H 95.5 0.014 3.1E-07 53.0 4.0 77 135-215 104-187 (203)
108 TIGR02247 HAD-1A3-hyp Epoxide 95.5 0.0044 9.5E-08 56.8 0.5 93 134-229 92-193 (211)
109 PRK06698 bifunctional 5'-methy 95.4 0.017 3.6E-07 59.9 4.4 90 134-228 328-423 (459)
110 PLN02811 hydrolase 95.2 0.012 2.5E-07 54.7 2.5 91 135-228 77-180 (220)
111 TIGR01689 EcbF-BcbF capsule bi 95.1 0.038 8.2E-07 47.3 5.1 51 136-188 24-87 (126)
112 TIGR01493 HAD-SF-IA-v2 Haloaci 95.1 0.005 1.1E-07 54.6 -0.5 73 134-215 88-166 (175)
113 PRK11133 serB phosphoserine ph 95.0 0.0067 1.5E-07 60.1 0.2 93 134-228 179-287 (322)
114 PF13344 Hydrolase_6: Haloacid 95.0 0.034 7.3E-07 45.6 4.3 30 139-168 17-51 (101)
115 PRK09484 3-deoxy-D-manno-octul 94.9 0.035 7.5E-07 50.3 4.4 74 150-229 63-136 (183)
116 PLN02919 haloacid dehalogenase 94.9 0.027 5.8E-07 64.3 4.5 89 137-227 162-257 (1057)
117 PF06941 NT5C: 5' nucleotidase 94.8 0.0042 9.2E-08 56.5 -1.7 81 135-228 72-158 (191)
118 KOG3524 Predicted guanine nucl 94.6 0.014 2.9E-07 62.0 1.1 93 290-385 200-292 (850)
119 TIGR03333 salvage_mtnX 2-hydro 94.4 0.093 2E-06 48.5 6.2 85 134-219 68-170 (214)
120 PRK13582 thrH phosphoserine ph 94.2 0.07 1.5E-06 48.4 4.9 83 134-218 66-157 (205)
121 PRK00192 mannosyl-3-phosphogly 94.1 0.17 3.6E-06 48.6 7.4 58 84-176 4-62 (273)
122 COG0561 Cof Predicted hydrolas 93.6 0.21 4.5E-06 47.5 7.0 69 84-187 3-74 (264)
123 TIGR01544 HAD-SF-IE haloacid d 93.4 0.17 3.6E-06 49.2 6.0 82 134-216 119-222 (277)
124 TIGR02463 MPGP_rel mannosyl-3- 93.3 0.23 5E-06 45.7 6.6 35 141-175 21-56 (221)
125 PF06888 Put_Phosphatase: Puta 93.2 0.24 5.2E-06 46.9 6.7 50 134-186 69-121 (234)
126 TIGR01456 CECR5 HAD-superfamil 93.2 0.17 3.7E-06 50.0 5.9 53 85-173 1-62 (321)
127 PTZ00445 p36-lilke protein; Pr 93.2 0.066 1.4E-06 49.8 2.7 147 62-231 24-204 (219)
128 PF08282 Hydrolase_3: haloacid 93.0 0.18 3.9E-06 46.3 5.4 54 87-175 1-55 (254)
129 COG4502 5'(3')-deoxyribonucleo 92.9 0.1 2.2E-06 45.4 3.3 28 135-162 67-94 (180)
130 PLN02645 phosphoglycolate phos 92.5 0.15 3.2E-06 50.2 4.3 113 76-228 21-134 (311)
131 TIGR02461 osmo_MPG_phos mannos 92.1 0.35 7.5E-06 45.3 6.1 37 139-175 18-55 (225)
132 PRK03669 mannosyl-3-phosphogly 92.0 0.4 8.7E-06 45.9 6.6 69 82-185 5-77 (271)
133 TIGR00099 Cof-subfamily Cof su 91.9 0.37 8E-06 45.5 6.2 55 87-176 2-57 (256)
134 TIGR01487 SPP-like sucrose-pho 91.9 0.37 8.1E-06 44.3 6.1 56 86-176 3-59 (215)
135 COG2503 Predicted secreted aci 91.9 0.29 6.3E-06 46.3 5.2 23 78-100 73-95 (274)
136 PF09419 PGP_phosphatase: Mito 91.7 0.84 1.8E-05 41.1 7.8 101 79-222 36-155 (168)
137 PRK10530 pyridoxal phosphate ( 91.7 0.65 1.4E-05 44.0 7.6 57 85-176 4-61 (272)
138 PRK10748 flavin mononucleotide 91.1 0.11 2.5E-06 48.7 1.7 85 135-228 112-204 (238)
139 PRK10513 sugar phosphate phosp 90.6 0.59 1.3E-05 44.4 6.2 57 85-176 4-61 (270)
140 KOG0966 ATP-dependent DNA liga 90.5 0.98 2.1E-05 49.2 8.1 144 225-385 713-881 (881)
141 PRK10444 UMP phosphatase; Prov 90.4 0.4 8.6E-06 45.7 4.7 52 86-173 3-55 (248)
142 PRK15126 thiamin pyrimidine py 90.2 0.88 1.9E-05 43.4 7.0 57 85-176 3-60 (272)
143 smart00775 LNS2 LNS2 domain. T 90.2 0.54 1.2E-05 41.6 5.1 62 86-171 1-66 (157)
144 TIGR01486 HAD-SF-IIB-MPGP mann 90.0 0.97 2.1E-05 42.8 7.1 36 140-175 20-56 (256)
145 TIGR02137 HSK-PSP phosphoserin 90.0 0.54 1.2E-05 43.4 5.1 50 135-186 67-116 (203)
146 PRK05601 DNA polymerase III su 89.9 0.95 2.1E-05 45.6 7.1 74 300-375 294-369 (377)
147 PF11019 DUF2608: Protein of u 89.9 1.1 2.3E-05 42.9 7.2 153 83-236 19-213 (252)
148 TIGR01488 HAD-SF-IB Haloacid D 89.8 0.67 1.5E-05 40.7 5.5 50 134-185 71-121 (177)
149 TIGR01452 PGP_euk phosphoglyco 89.7 0.47 1E-05 45.8 4.7 40 86-161 4-44 (279)
150 PRK01158 phosphoglycolate phos 89.7 0.91 2E-05 41.8 6.5 57 85-176 4-61 (230)
151 TIGR01675 plant-AP plant acid 89.7 1.1 2.4E-05 42.3 7.0 125 79-219 72-210 (229)
152 TIGR01484 HAD-SF-IIB HAD-super 89.3 0.76 1.7E-05 41.6 5.6 37 137-173 18-55 (204)
153 TIGR01482 SPP-subfamily Sucros 88.6 0.88 1.9E-05 41.7 5.5 36 139-174 18-54 (225)
154 TIGR01458 HAD-SF-IIA-hyp3 HAD- 88.4 0.6 1.3E-05 44.6 4.4 46 86-163 3-49 (257)
155 PRK10976 putative hydrolase; P 88.3 1.2 2.5E-05 42.3 6.3 57 85-176 3-60 (266)
156 TIGR02726 phenyl_P_delta pheny 88.3 0.92 2E-05 40.7 5.3 116 85-231 8-124 (169)
157 PLN02887 hydrolase family prot 87.7 1.1 2.3E-05 48.1 6.1 70 71-175 295-365 (580)
158 PRK10187 trehalose-6-phosphate 87.7 0.98 2.1E-05 43.4 5.3 60 84-173 14-75 (266)
159 COG0647 NagD Predicted sugar p 86.4 0.91 2E-05 43.9 4.3 66 83-187 7-77 (269)
160 COG0241 HisB Histidinol phosph 86.3 1.2 2.6E-05 40.6 4.8 125 84-237 5-152 (181)
161 TIGR01457 HAD-SF-IIA-hyp2 HAD- 86.3 1.1 2.3E-05 42.7 4.7 40 86-161 3-43 (249)
162 TIGR02244 HAD-IG-Ncltidse HAD 85.3 1 2.2E-05 45.1 4.1 57 130-188 178-242 (343)
163 PRK12702 mannosyl-3-phosphogly 84.7 3.1 6.8E-05 40.8 7.1 57 85-176 2-59 (302)
164 PLN03017 trehalose-phosphatase 84.6 1.6 3.6E-05 44.0 5.3 63 78-170 105-167 (366)
165 TIGR01485 SPP_plant-cyano sucr 84.3 2.2 4.7E-05 40.2 5.8 59 84-174 1-60 (249)
166 TIGR00685 T6PP trehalose-phosp 84.1 0.82 1.8E-05 43.1 2.8 63 82-175 1-63 (244)
167 TIGR01490 HAD-SF-IB-hyp1 HAD-s 83.5 2.3 5E-05 38.3 5.5 49 135-185 86-135 (202)
168 PLN02423 phosphomannomutase 83.5 2.2 4.8E-05 40.4 5.5 18 82-99 5-22 (245)
169 PF03767 Acid_phosphat_B: HAD 83.1 0.5 1.1E-05 44.5 0.9 82 82-172 70-152 (229)
170 COG1877 OtsB Trehalose-6-phosp 82.7 5.2 0.00011 38.7 7.7 65 76-170 10-76 (266)
171 PLN02151 trehalose-phosphatase 82.4 2.1 4.6E-05 43.0 5.1 62 79-170 93-154 (354)
172 PRK14502 bifunctional mannosyl 82.1 4.6 0.0001 44.0 7.8 60 82-176 414-474 (694)
173 PTZ00174 phosphomannomutase; P 82.1 3 6.5E-05 39.4 5.8 16 84-99 5-20 (247)
174 TIGR01460 HAD-SF-IIA Haloacid 81.9 1.4 3E-05 41.4 3.5 34 139-172 17-55 (236)
175 TIGR01548 HAD-SF-IA-hyp1 haloa 81.0 0.8 1.7E-05 41.4 1.4 15 86-100 2-16 (197)
176 PLN02580 trehalose-phosphatase 80.7 3 6.5E-05 42.4 5.5 63 78-170 113-175 (384)
177 KOG3120 Predicted haloacid deh 79.7 2.9 6.3E-05 39.3 4.6 50 135-187 83-134 (256)
178 PRK10725 fructose-1-P/6-phosph 79.0 1.1 2.4E-05 39.8 1.7 43 314-365 142-184 (188)
179 COG3882 FkbH Predicted enzyme 78.6 1.4 3.1E-05 45.6 2.4 128 77-231 215-354 (574)
180 PF00702 Hydrolase: haloacid d 78.3 3.4 7.4E-05 37.0 4.7 77 133-215 124-205 (215)
181 TIGR01680 Veg_Stor_Prot vegeta 78.3 8.9 0.00019 37.2 7.6 82 137-219 146-236 (275)
182 PRK11587 putative phosphatase; 75.8 1.4 3.1E-05 40.5 1.5 16 85-100 4-19 (218)
183 TIGR01511 ATPase-IB1_Cu copper 75.7 5.7 0.00012 42.4 6.1 75 135-218 404-479 (562)
184 KOG3548 DNA damage checkpoint 73.0 4.4 9.6E-05 45.1 4.4 94 286-379 1045-1158(1176)
185 TIGR02253 CTE7 HAD superfamily 72.7 1.9 4.1E-05 39.4 1.4 15 86-100 4-18 (221)
186 TIGR01454 AHBA_synth_RP 3-amin 72.5 1.4 3E-05 40.0 0.5 14 87-100 1-14 (205)
187 TIGR01549 HAD-SF-IA-v1 haloaci 72.3 1.6 3.4E-05 37.5 0.8 14 86-99 1-14 (154)
188 TIGR02252 DREG-2 REG-2-like, H 72.0 2.3 4.9E-05 38.4 1.8 15 86-100 2-16 (203)
189 TIGR03351 PhnX-like phosphonat 71.8 2.2 4.8E-05 39.0 1.6 15 86-100 3-17 (220)
190 TIGR01512 ATPase-IB2_Cd heavy 71.1 4.6 0.0001 42.8 4.1 88 133-228 359-448 (536)
191 TIGR02009 PGMB-YQAB-SF beta-ph 70.8 2.1 4.5E-05 37.8 1.2 15 86-100 3-17 (185)
192 PRK13223 phosphoglycolate phos 70.6 2.2 4.7E-05 41.1 1.4 17 84-100 13-29 (272)
193 TIGR01525 ATPase-IB_hvy heavy 70.5 4 8.6E-05 43.5 3.4 77 134-218 382-460 (556)
194 PLN02770 haloacid dehalogenase 70.2 2.2 4.7E-05 40.3 1.2 16 85-100 23-38 (248)
195 TIGR01990 bPGM beta-phosphoglu 70.1 2 4.3E-05 37.9 0.9 15 86-100 1-15 (185)
196 PRK11590 hypothetical protein; 69.3 6.8 0.00015 35.9 4.3 39 135-173 94-134 (211)
197 PRK13478 phosphonoacetaldehyde 69.3 2.5 5.5E-05 40.2 1.5 15 85-99 5-19 (267)
198 TIGR01449 PGP_bact 2-phosphogl 69.0 1.9 4E-05 39.1 0.5 43 318-368 144-186 (213)
199 TIGR01493 HAD-SF-IA-v2 Haloaci 68.9 2.3 4.9E-05 37.4 1.0 14 87-100 2-15 (175)
200 TIGR01422 phosphonatase phosph 68.8 2.7 5.9E-05 39.5 1.6 15 85-99 3-17 (253)
201 COG4359 Uncharacterized conser 67.4 11 0.00024 34.5 5.1 39 135-173 72-111 (220)
202 TIGR01545 YfhB_g-proteo haloac 67.0 7.8 0.00017 35.8 4.2 38 135-172 93-132 (210)
203 PLN02382 probable sucrose-phos 67.0 3.1 6.8E-05 42.7 1.7 22 77-98 2-23 (413)
204 PRK11590 hypothetical protein; 66.8 3.2 6.9E-05 38.2 1.6 15 83-97 5-19 (211)
205 PRK10748 flavin mononucleotide 66.7 2.7 5.9E-05 39.4 1.1 15 86-100 12-26 (238)
206 TIGR01509 HAD-SF-IA-v3 haloaci 65.3 3 6.5E-05 36.5 1.1 15 86-100 1-15 (183)
207 PF13419 HAD_2: Haloacid dehal 65.0 3.2 7E-05 35.5 1.2 14 87-100 1-14 (176)
208 PRK14988 GMP/IMP nucleotidase; 64.5 3.6 7.8E-05 38.3 1.5 15 85-99 11-25 (224)
209 COG3769 Predicted hydrolase (H 63.8 20 0.00043 33.9 6.1 31 149-179 37-67 (274)
210 TIGR02254 YjjG/YfnB HAD superf 63.6 3.6 7.8E-05 37.4 1.3 44 318-368 155-199 (224)
211 PRK14501 putative bifunctional 63.5 12 0.00027 41.2 5.6 62 81-172 489-552 (726)
212 TIGR01428 HAD_type_II 2-haloal 63.4 3.5 7.7E-05 37.0 1.2 15 86-100 3-17 (198)
213 PLN02779 haloacid dehalogenase 63.2 4.3 9.3E-05 39.4 1.8 15 85-99 41-55 (286)
214 PF08235 LNS2: LNS2 (Lipin/Ned 63.1 13 0.00029 33.0 4.7 63 86-172 1-64 (157)
215 PRK13222 phosphoglycolate phos 62.7 3.8 8.2E-05 37.4 1.3 14 86-99 8-21 (226)
216 KOG2914 Predicted haloacid-hal 62.3 5.6 0.00012 37.4 2.3 98 131-231 87-198 (222)
217 TIGR02247 HAD-1A3-hyp Epoxide 62.1 4.5 9.7E-05 36.8 1.6 46 314-368 152-197 (211)
218 PRK10563 6-phosphogluconate ph 61.5 3.9 8.5E-05 37.4 1.1 16 85-100 5-20 (221)
219 TIGR01491 HAD-SF-IB-PSPlk HAD- 61.1 4.5 9.7E-05 36.1 1.4 14 86-99 6-19 (201)
220 PRK10826 2-deoxyglucose-6-phos 60.8 4.8 0.0001 37.0 1.6 18 83-100 6-23 (222)
221 PRK09449 dUMP phosphatase; Pro 59.5 4.4 9.6E-05 37.1 1.1 47 314-367 150-196 (224)
222 KOG3085 Predicted hydrolase (H 58.6 5 0.00011 38.1 1.3 81 133-217 111-197 (237)
223 PF12710 HAD: haloacid dehalog 58.3 8.6 0.00019 33.9 2.7 40 137-176 86-130 (192)
224 PRK06698 bifunctional 5'-methy 56.1 5 0.00011 41.6 0.9 16 85-100 242-257 (459)
225 KOG2134 Polynucleotide kinase 55.1 19 0.00041 36.6 4.7 72 80-174 71-155 (422)
226 PRK13582 thrH phosphoserine ph 53.8 6.8 0.00015 35.2 1.3 12 86-97 3-14 (205)
227 COG3700 AphA Acid phosphatase 52.3 59 0.0013 29.8 6.9 105 77-215 56-170 (237)
228 PF05116 S6PP: Sucrose-6F-phos 51.2 22 0.00047 33.7 4.4 34 139-172 22-56 (247)
229 PLN02940 riboflavin kinase 48.8 8.5 0.00018 39.0 1.2 16 85-100 12-27 (382)
230 TIGR02137 HSK-PSP phosphoserin 47.6 9.3 0.0002 35.1 1.2 14 86-99 3-16 (203)
231 PF05822 UMPH-1: Pyrimidine 5' 47.2 32 0.00069 32.9 4.7 39 134-172 88-127 (246)
232 PF13240 zinc_ribbon_2: zinc-r 46.6 10 0.00022 22.5 0.9 19 28-46 4-23 (23)
233 PLN02205 alpha,alpha-trehalose 44.5 20 0.00044 40.3 3.4 61 80-172 592-654 (854)
234 PF02358 Trehalose_PPase: Treh 43.3 33 0.00072 31.9 4.3 33 136-168 19-53 (235)
235 cd06537 CIDE_N_B CIDE_N domain 42.5 39 0.00084 26.7 3.7 18 82-99 37-54 (81)
236 PRK09456 ?-D-glucose-1-phospha 42.4 13 0.00029 33.4 1.4 46 314-368 141-186 (199)
237 TIGR02471 sucr_syn_bact_C sucr 42.1 12 0.00025 34.8 0.9 13 87-99 2-14 (236)
238 PLN03064 alpha,alpha-trehalose 41.4 50 0.0011 37.6 5.9 73 79-172 586-660 (934)
239 cd06536 CIDE_N_ICAD CIDE_N dom 41.4 54 0.0012 25.8 4.4 17 83-99 41-57 (80)
240 PLN03063 alpha,alpha-trehalose 40.6 48 0.001 37.1 5.6 65 80-171 503-569 (797)
241 COG1011 Predicted hydrolase (H 39.2 18 0.00038 32.9 1.7 17 84-100 4-20 (229)
242 PF05761 5_nucleotid: 5' nucle 39.2 50 0.0011 34.4 5.1 54 131-186 178-240 (448)
243 PF05864 Chordopox_RPO7: Chord 39.2 10 0.00022 27.8 0.0 16 34-49 2-17 (63)
244 TIGR01545 YfhB_g-proteo haloac 39.0 16 0.00035 33.7 1.4 17 84-100 5-21 (210)
245 COG1105 FruK Fructose-1-phosph 38.9 63 0.0014 32.0 5.5 51 287-337 114-167 (310)
246 TIGR01488 HAD-SF-IB Haloacid D 38.2 15 0.00032 32.0 0.9 14 87-100 2-15 (177)
247 PF13248 zf-ribbon_3: zinc-rib 38.0 16 0.00035 22.1 0.8 19 28-46 7-26 (26)
248 cd02640 R3H_NRF R3H domain of 37.4 82 0.0018 23.3 4.6 57 287-345 2-58 (60)
249 cd01615 CIDE_N CIDE_N domain, 37.3 52 0.0011 25.8 3.7 18 82-99 38-55 (78)
250 PHA03082 DNA-dependent RNA pol 35.1 13 0.00027 27.3 -0.0 16 34-49 2-17 (63)
251 cd06538 CIDE_N_FSP27 CIDE_N do 34.9 56 0.0012 25.7 3.5 18 82-99 37-54 (79)
252 PF12710 HAD: haloacid dehalog 34.6 19 0.00042 31.6 1.1 39 287-332 92-130 (192)
253 TIGR01490 HAD-SF-IB-hyp1 HAD-s 33.8 19 0.00041 32.2 0.9 14 87-100 2-15 (202)
254 PF02017 CIDE-N: CIDE-N domain 31.7 68 0.0015 25.1 3.6 18 82-99 38-55 (78)
255 PRK10671 copA copper exporting 30.0 53 0.0011 36.9 3.8 84 136-227 650-734 (834)
256 smart00266 CAD Domains present 29.0 72 0.0016 24.8 3.2 17 83-99 37-53 (74)
257 cd06539 CIDE_N_A CIDE_N domain 28.8 85 0.0018 24.6 3.6 18 82-99 38-55 (78)
258 PF10235 Cript: Microtubule-as 27.2 26 0.00056 28.2 0.5 16 34-49 67-82 (90)
259 PRK03922 hypothetical protein; 26.8 62 0.0013 27.0 2.7 49 38-86 51-106 (113)
260 COG1885 Uncharacterized protei 26.7 62 0.0013 26.7 2.6 49 38-86 51-106 (115)
261 PLN02919 haloacid dehalogenase 25.9 36 0.00078 39.3 1.6 15 86-100 77-91 (1057)
262 cd02514 GT13_GLCNAC-TI GT13_GL 25.5 69 0.0015 32.0 3.3 83 133-216 6-109 (334)
263 KOG2093 Translesion DNA polyme 24.7 91 0.002 35.0 4.2 83 297-384 44-128 (1016)
264 PF00702 Hydrolase: haloacid d 24.0 45 0.00097 29.6 1.6 37 286-330 129-166 (215)
265 PF13701 DDE_Tnp_1_4: Transpos 23.8 2E+02 0.0044 29.8 6.5 110 64-179 116-244 (448)
266 PF05991 NYN_YacP: YacP-like N 23.3 3.4E+02 0.0075 24.0 7.1 68 298-375 62-129 (166)
267 KOG4362 Transcriptional regula 22.8 84 0.0018 34.4 3.5 81 296-377 583-679 (684)
268 TIGR01658 EYA-cons_domain eyes 22.3 37 0.00081 32.5 0.7 41 318-366 216-256 (274)
269 KOG1615 Phosphoserine phosphat 22.2 1.5E+02 0.0033 27.6 4.5 42 135-176 87-129 (227)
270 PF05221 AdoHcyase: S-adenosyl 22.2 1.4E+02 0.003 28.9 4.6 36 297-334 37-72 (268)
271 KOG3908 Queuine-tRNA ribosyltr 22.0 89 0.0019 30.8 3.2 55 323-386 138-192 (396)
272 COG5067 DBF4 Protein kinase es 21.8 75 0.0016 32.4 2.7 46 300-347 122-167 (468)
273 COG4850 Uncharacterized conser 21.5 2E+02 0.0044 28.8 5.6 82 78-176 155-238 (373)
274 PLN02177 glycerol-3-phosphate 20.6 50 0.0011 34.8 1.3 36 137-175 111-147 (497)
275 PRK00536 speE spermidine synth 20.4 73 0.0016 30.7 2.3 76 79-177 90-166 (262)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=1.1e-64 Score=523.14 Aligned_cols=357 Identities=34% Similarity=0.561 Sum_probs=308.4
Q ss_pred ccCCCceeecccccccccccccCCccceeeecCCcccCHHHHHHHhhccch-hhhcCCceEEEEeCCCceeeeecCCCCC
Q 036523 27 ESCSHPQTFNGVCLSCAQTVGEGYGLSFNYMLEGLEFGKDEVTRLKRMNSE-IVFGQRKLQLVLDLDHTLLHATDLDMLA 105 (387)
Q Consensus 27 e~C~H~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~l~vs~~~a~~~~~~~~~-~l~~~~kl~LVLDLD~TLihs~~~~~~~ 105 (387)
+.|.|+++++|||+.||++++...+..+.|...++.++..++..+...+.. ..+.+++|.||+|||+||+|++....+.
T Consensus 88 ~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~ 167 (635)
T KOG0323|consen 88 SCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLS 167 (635)
T ss_pred CCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhh
Confidence 789999999999999999999988888899999999999999888877644 5566777899999999999999877666
Q ss_pred ccchhhhcccccCCCCCCceeeec----CceEEEeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeec
Q 036523 106 PDDRDYLMKRESSASDGGGLFMMD----GGLLLVKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYIS 181 (387)
Q Consensus 106 ~~~~~~~~~~~~~~~d~~~~f~l~----~~~~~v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~ 181 (387)
.++ .++..+..++.....+|.++ ..+||||+|||+.+||++++++|||||||||+|.||..|+++|||+|.|| +
T Consensus 168 e~~-~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF-~ 245 (635)
T KOG0323|consen 168 ETE-KYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYF-G 245 (635)
T ss_pred hhh-hhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccc-c
Confidence 655 55655544311223345544 36899999999999999999999999999999999999999999999999 9
Q ss_pred ccEEeccCCCCCceecccccc-CCCCCeEEEeCChhhhhcCCCCeeEeccccchhhhhhhccC-----------------
Q 036523 182 SRLITCEDFKDTGKKNLDLVL-GQERGVVIVDDTAEVWKDHKENLILVGKYNYFKERIRKSKN----------------- 243 (387)
Q Consensus 182 ~Ri~srd~~~~~~~KdL~~l~-~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~ff~~~~~~~~~----------------- 243 (387)
+||+||++......+||..++ ++.+||||||||.+||+.++.|+|+|.||.||.+.++....
T Consensus 246 dRIisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~ 325 (635)
T KOG0323|consen 246 DRIISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAF 325 (635)
T ss_pred ceEEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhccccccc
Confidence 999999998877788888887 58999999999999999887799999999999997742210
Q ss_pred -------------------------------------------------------CCCccccccccCchhhhHHHHHHHH
Q 036523 244 -------------------------------------------------------NDQKSYSERKSDESELNGALVNVLR 268 (387)
Q Consensus 244 -------------------------------------------------------~~~~s~~~~~~d~~~~D~~L~~l~~ 268 (387)
+..+++.+.+.|+.+.|.+|.++++
T Consensus 326 ~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~k 405 (635)
T KOG0323|consen 326 FKEFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLK 405 (635)
T ss_pred ccccCcccccccccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhh
Confidence 1233445555677888999999999
Q ss_pred HHHHHHhhhhcC----CCccccCchhhhHHHHhhhcccceeeeeccCCCCC--CchHHHHHHHHHhCCeeecccCCCceE
Q 036523 269 VLKRVHELFFEN----PENLVWGDVRSFLAKIRRQILAGCTLFFNMGDVGP--QEFPLLRRRAEELGAACTDVHDSSVTH 342 (387)
Q Consensus 269 ~L~~ih~~ff~~----~~~~~~~DVr~il~~~R~~vl~G~~i~fSg~~~~~--~~~~~l~~la~~lGa~v~~~v~~~vTH 342 (387)
+|+.||..||.. .+....+|||.+|+++|.++++||.++|||.+|.. ..++.+..++..+||..+.+++..+||
T Consensus 406 vl~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th 485 (635)
T KOG0323|consen 406 VLKPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTH 485 (635)
T ss_pred hhcccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhh
Confidence 999999999996 34567899999999999999999999999999922 235677788999999999999999999
Q ss_pred EEEcCCCchHHHHHHhCC-CeeeCHHHHHHHHHhcccCCCCCCC
Q 036523 343 VVSTRQATEGRRLAEQHN-NFLVHPRWIYAAYYLWSRQAENDYF 385 (387)
Q Consensus 343 lVa~~~~t~K~~~A~~~g-i~IV~~~Wl~~c~~~~~r~dE~~Y~ 385 (387)
+|+.+.+|.|+.+|...+ ++||++.|||.|+.+|.+++|..|.
T Consensus 486 ~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~ 529 (635)
T KOG0323|consen 486 LIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEP 529 (635)
T ss_pred HHhhccCcceeeccccccceeEechhHHHHHHHHhcchhccccc
Confidence 999999999999999876 9999999999999999999999885
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=3.6e-38 Score=279.35 Aligned_cols=153 Identities=41% Similarity=0.681 Sum_probs=129.2
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCC--CCCceeeecCceEEEeeCccHHHHHHHHhhcccEEE
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSAS--DGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYI 156 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~--d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~I 156 (387)
|++++|++||||||||||||+..+..+..+ .+.. ...... .....|.+.+..+++++|||+.+||+++++.|+++|
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~~~-~~~~-~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I 78 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSEWE-KYDI-EEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHV 78 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccchhh-hccc-ccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEE
Confidence 578999999999999999999765443322 1111 111100 113357777788999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceecccccc-CCCCCeEEEeCChhhhhcCCCCeeEeccccch
Q 036523 157 CTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVL-GQERGVVIVDDTAEVWKDHKENLILVGKYNYF 234 (387)
Q Consensus 157 yT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~-~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~ff 234 (387)
||++++.||++|++.|||.+.+| ++|+++|++|.+.+.|||+.++ +++++||||||++++|..|++|+|+|+||.||
T Consensus 79 ~T~~~~~yA~~vl~~ldp~~~~F-~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~~f 156 (156)
T TIGR02250 79 YTMGTRAYAQAIAKLIDPDGKYF-GDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156 (156)
T ss_pred EeCCcHHHHHHHHHHhCcCCCee-ccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcccC
Confidence 99999999999999999999999 9999999999999999997664 69999999999999999999999999999998
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=1.2e-35 Score=280.69 Aligned_cols=173 Identities=25% Similarity=0.321 Sum_probs=146.5
Q ss_pred hhhcCCceEEEEeCCCceeeeec-CCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATD-LDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYI 156 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~-~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~I 156 (387)
++...+|++|||||||||+|++. .+...++ ++.... .+......+||.+|||+++||..++++||++|
T Consensus 83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~---d~~~~v--------~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~ 151 (262)
T KOG1605|consen 83 RLATVGRKTLVLDLDETLVHSSLNLKPIVNA---DFTVPV--------EIDGHIHQVYVRKRPHVDEFLSRVSKWYELVL 151 (262)
T ss_pred ccccCCCceEEEeCCCcccccccccCCCCCc---ceeeee--------eeCCcceEEEEEcCCCHHHHHHHhHHHHHHHH
Confidence 44578899999999999999984 2221222 232211 12222467899999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHcCCCCceeecccEEeccCCC---CCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEeccccc
Q 036523 157 CTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFK---DTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKYNY 233 (387)
Q Consensus 157 yT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~---~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~f 233 (387)
||++...||.+|+++|||.+++| .+|+| |+.|. +.|+|||..+++++++||||||+|.+|..||+|||+|++|
T Consensus 152 FTAs~~~Ya~~v~D~LD~~~~i~-~~Rly-R~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw-- 227 (262)
T KOG1605|consen 152 FTASLEVYADPLLDILDPDRKII-SHRLY-RDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSW-- 227 (262)
T ss_pred HHhhhHHHHHHHHHHccCCCCee-eeeec-ccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCccccc--
Confidence 99999999999999999988889 88887 99996 6799999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCccccccccCchhhhHHHHHHHHHHHHHHhhhhcCCCccccCchhhhHHHH
Q 036523 234 FKERIRKSKNNDQKSYSERKSDESELNGALVNVLRVLKRVHELFFENPENLVWGDVRSFLAKI 296 (387)
Q Consensus 234 f~~~~~~~~~~~~~s~~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~DVr~il~~~ 296 (387)
+ . +..|.||++|+++|+.+.. .+|||.+++..
T Consensus 228 ---------~----------~--d~~D~eLL~LlpfLe~L~~----------~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 228 ---------F----------D--DPTDTELLKLLPFLEALAF----------VDDVRPILARR 259 (262)
T ss_pred ---------c----------c--CCChHHHHHHHHHHHHhcc----------cccHHHHHHHh
Confidence 3 1 3579999999999999986 68999999863
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.1e-33 Score=252.39 Aligned_cols=156 Identities=26% Similarity=0.271 Sum_probs=129.4
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEcCCcHH
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICTMGNRH 163 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT~g~~~ 163 (387)
|++||||||||||||+..+...+ .++.... .++.....+||++|||+.+||+++++.|||+|||+|++.
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~ 69 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVD---ADFKVPV--------LIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEE 69 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCC---CceEEEE--------EecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHH
Confidence 67999999999999976421101 1111110 111224679999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCceeecccEEeccCCC---CCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEeccccchhhhhhh
Q 036523 164 YAEMIAKLLDPKCEYYISSRLITCEDFK---DTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKYNYFKERIRK 240 (387)
Q Consensus 164 YA~~i~~~LDP~~~~F~~~Ri~srd~~~---~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~ff~~~~~~ 240 (387)
||++|++.|||.+.+| ..+ ++|++|. +.+.|+|+.+++++++||||||++..|..+++|||+|.+|.
T Consensus 70 yA~~il~~ldp~~~~f-~~~-l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~-------- 139 (162)
T TIGR02251 70 YADPVLDILDRGGKVI-SRR-LYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF-------- 139 (162)
T ss_pred HHHHHHHHHCcCCCEE-eEE-EEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCC--------
Confidence 9999999999998889 555 5599985 45899999999999999999999999999999999999992
Q ss_pred ccCCCCccccccccCchhhhHHHHHHHHHHHHHHh
Q 036523 241 SKNNDQKSYSERKSDESELNGALVNVLRVLKRVHE 275 (387)
Q Consensus 241 ~~~~~~~s~~~~~~d~~~~D~~L~~l~~~L~~ih~ 275 (387)
.+.+|.+|..|+++|+.|+.
T Consensus 140 ---------------~~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 140 ---------------GDPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred ---------------CCCCHHHHHHHHHHHHHHhc
Confidence 13689999999999999986
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=1.2e-32 Score=243.87 Aligned_cols=156 Identities=34% Similarity=0.469 Sum_probs=115.8
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEcCCcHHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICTMGNRHY 164 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT~g~~~Y 164 (387)
++|||||||||||+...+.. +.+ ... .. ....+++++|||+++||+++++.|||+|||+|++.|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~~---~~~-----------~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~y 64 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PYD---FKI-----------ID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEY 64 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T-S---EEE-----------ET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHH
T ss_pred CEEEEeCCCcEEEEeecCCC-Ccc---cce-----------ec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhh
Confidence 58999999999999864322 100 000 00 235689999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCceeecccEEeccCCC---CCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEeccccchhhhhhhc
Q 036523 165 AEMIAKLLDPKCEYYISSRLITCEDFK---DTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKYNYFKERIRKS 241 (387)
Q Consensus 165 A~~i~~~LDP~~~~F~~~Ri~srd~~~---~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~ff~~~~~~~ 241 (387)
|.+|++.|||++.+| .++++|++|. +.+.|||+.++++.++||||||++.+|..+++|+|+|++|
T Consensus 65 a~~v~~~ldp~~~~~--~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f---------- 132 (159)
T PF03031_consen 65 AEPVLDALDPNGKLF--SRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPF---------- 132 (159)
T ss_dssp HHHHHHHHTTTTSSE--EEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE--------------
T ss_pred hhHHHHhhhhhcccc--ccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccc----------
Confidence 999999999998899 5556799985 3357999999989999999999999999899999999999
Q ss_pred cCCCCccccccccCchhhhHHHHHHHHHHHHHHhhhhcCCCccccCchh
Q 036523 242 KNNDQKSYSERKSDESELNGALVNVLRVLKRVHELFFENPENLVWGDVR 290 (387)
Q Consensus 242 ~~~~~~s~~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~DVr 290 (387)
. .+ ..+|++|..|+++|+.+.. .+|||
T Consensus 133 -~----------~~-~~~D~~L~~l~~~L~~l~~----------~~Dvr 159 (159)
T PF03031_consen 133 -F----------GD-TPNDRELLRLLPFLEELAK----------EDDVR 159 (159)
T ss_dssp -S----------SC-HTT--HHHHHHHHHHHHHT----------HS-CH
T ss_pred -c----------CC-CcchhHHHHHHHHHHHhCc----------ccCCC
Confidence 2 11 1579999999999999997 67887
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.96 E-value=2e-29 Score=230.13 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=125.9
Q ss_pred hhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYIC 157 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~Iy 157 (387)
+..+.+|.+|||||||||||+.. +.+ ..++.+|||+++||+.+++.|||+||
T Consensus 15 ~~~~~~kklLVLDLDeTLvh~~~-----~~~-----------------------~~~~~kRP~l~eFL~~~~~~feIvVw 66 (195)
T TIGR02245 15 NPPREGKKLLVLDIDYTLFDHRS-----PAE-----------------------TGEELMRPYLHEFLTSAYEDYDIVIW 66 (195)
T ss_pred CCCCCCCcEEEEeCCCceEcccc-----cCC-----------------------CceEEeCCCHHHHHHHHHhCCEEEEE
Confidence 34567889999999999999753 111 23678999999999999999999999
Q ss_pred cCCcHHHHHHHHHHcCCCCc-eeecccEEeccCCC---------C-CceeccccccC------CCCCeEEEeCChhhhhc
Q 036523 158 TMGNRHYAEMIAKLLDPKCE-YYISSRLITCEDFK---------D-TGKKNLDLVLG------QERGVVIVDDTAEVWKD 220 (387)
Q Consensus 158 T~g~~~YA~~i~~~LDP~~~-~F~~~Ri~srd~~~---------~-~~~KdL~~l~~------~~~~vvIiDD~~~~w~~ 220 (387)
|++++.||+++++.|++.+. -| .-+. .+|.|. + .++|+|+.+.+ +++++|||||+|.++..
T Consensus 67 TAa~~~ya~~~l~~l~~~~~~~~-~i~~-~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~ 144 (195)
T TIGR02245 67 SATSMKWIEIKMTELGVLTNPNY-KITF-LLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLM 144 (195)
T ss_pred ecCCHHHHHHHHHHhcccCCccc-eEEE-EeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhc
Confidence 99999999999999976432 12 2222 245552 2 24899998742 67899999999999999
Q ss_pred CCCCeeEeccccchhhhhhhccCCCCccccccccCchhhhHHHHHHHHHHHHHHhhhhcCCCccccCchhhhHHH
Q 036523 221 HKENLILVGKYNYFKERIRKSKNNDQKSYSERKSDESELNGALVNVLRVLKRVHELFFENPENLVWGDVRSFLAK 295 (387)
Q Consensus 221 ~~~N~I~I~~y~ff~~~~~~~~~~~~~s~~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~DVr~il~~ 295 (387)
||+|||+|+||..- . ..+.+|.+|..|+++|+.|.. .+|||.+..+
T Consensus 145 ~P~N~i~I~~f~~~-~------------------~~~~~D~eL~~L~~yL~~la~----------~~Dvr~~~~~ 190 (195)
T TIGR02245 145 NPQNGLKIRPFKKA-H------------------ANRGTDQELLKLTQYLKTIAE----------LEDFSSLDHK 190 (195)
T ss_pred CCCCccccCCcccc-C------------------CCCcccHHHHHHHHHHHHHhc----------Ccccchhhhc
Confidence 99999999999210 0 013689999999999999997 8999999864
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.91 E-value=2.8e-24 Score=188.83 Aligned_cols=142 Identities=31% Similarity=0.399 Sum_probs=114.2
Q ss_pred CceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEcCCcH
Q 036523 83 RKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICTMGNR 162 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT~g~~ 162 (387)
||++|||||||||||+...+.. +........ ...+......+++++|||+.+||+.+.+.|+++|||++.+
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~ 71 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-EWTNRDFIV--------PVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLR 71 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-CCCccceEE--------EEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcH
Confidence 6899999999999999742211 111000110 0112233467899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCceeecccEEeccCCC---CCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEeccccchh
Q 036523 163 HYAEMIAKLLDPKCEYYISSRLITCEDFK---DTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKYNYFK 235 (387)
Q Consensus 163 ~YA~~i~~~LDP~~~~F~~~Ri~srd~~~---~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~ff~ 235 (387)
.||+.+++.+|+.+.+| ++|++++++. ..+.|+|++++.+++.+|+|||++..|..++.|||.|+||.++.
T Consensus 72 ~~~~~il~~l~~~~~~f--~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~ 145 (148)
T smart00577 72 MYADPVLDLLDPKKYFG--YRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDP 145 (148)
T ss_pred HHHHHHHHHhCcCCCEe--eeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCC
Confidence 99999999999977566 8899999985 24789999999999999999999999999999999999996543
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.91 E-value=1.7e-24 Score=209.00 Aligned_cols=157 Identities=25% Similarity=0.321 Sum_probs=140.8
Q ss_pred cCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEcCC
Q 036523 81 GQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICTMG 160 (387)
Q Consensus 81 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT~g 160 (387)
.+.++||||||.++|||..+. +. ..|.+++|||++.||..++++|||+|||..
T Consensus 186 ~Qp~yTLVleledvLVhpdws---------~~------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse 238 (393)
T KOG2832|consen 186 EQPPYTLVLELEDVLVHPDWS---------YK------------------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSE 238 (393)
T ss_pred cCCCceEEEEeeeeEeccchh---------hh------------------cCceeccCchHHHHHHhhcccceEEEEecC
Confidence 468999999999999999762 11 246789999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCCceeecccEEeccCCC---CCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEeccccchhhh
Q 036523 161 NRHYAEMIAKLLDPKCEYYISSRLITCEDFK---DTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKYNYFKER 237 (387)
Q Consensus 161 ~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~---~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~ff~~~ 237 (387)
...||.++++.|||.| ++ +.|++ |+.+. +.++|||+.|++|+.+||+||-++.....||+|.|+++||
T Consensus 239 ~gmt~~pl~d~lDP~g-~I-sYkLf-r~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W------ 309 (393)
T KOG2832|consen 239 QGMTVFPLLDALDPKG-YI-SYKLF-RGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPW------ 309 (393)
T ss_pred CccchhhhHhhcCCcc-eE-EEEEe-cCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcC------
Confidence 9999999999999998 56 89998 88774 5789999999999999999999999999999999999999
Q ss_pred hhhccCCCCccccccccCchhhhHHHHHHHHHHHHHHhhhhcCCCccccCchhhhHHHHhh
Q 036523 238 IRKSKNNDQKSYSERKSDESELNGALVNVLRVLKRVHELFFENPENLVWGDVRSFLAKIRR 298 (387)
Q Consensus 238 ~~~~~~~~~~s~~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~DVr~il~~~R~ 298 (387)
.++++|+.|.+|+.+|+.||.. ...|||++|+.+..
T Consensus 310 -----------------~Gn~dDt~L~dL~~FL~~ia~~--------~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 310 -----------------SGNDDDTSLFDLLAFLEYIAQQ--------QVEDVRPVLQSYSQ 345 (393)
T ss_pred -----------------CCCcccchhhhHHHHHHHHHHc--------cHHHHHHHHHHhcc
Confidence 2357899999999999999983 68999999988663
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.82 E-value=5.9e-21 Score=189.22 Aligned_cols=290 Identities=22% Similarity=0.307 Sum_probs=211.5
Q ss_pred ccCHHHHHHHhhccchhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccH
Q 036523 62 EFGKDEVTRLKRMNSEIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYI 141 (387)
Q Consensus 62 ~vs~~~a~~~~~~~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl 141 (387)
.++.++|.+.+.+...+|-.++++.||+|+|+|.+|++..+..|+..+........+..+ ..+....+.|+++.||++
T Consensus 4 ~i~~~~~~~~~~~~~~~l~q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~~l 81 (390)
T COG5190 4 NISHEEASRTKKESMEALRQDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVND--RDPVQEKCAYYVKARPKL 81 (390)
T ss_pred eeEeeehhhhhhhHHHHhhcCcccccccccccceecccccCCCCCchhhhhhccccchhc--cccccccccceeeecccc
Confidence 678899999999999999999999999999999999997653333321111111111111 112234678999999999
Q ss_pred HHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccC-CCCCeEEEeCChhhh--
Q 036523 142 RSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLG-QERGVVIVDDTAEVW-- 218 (387)
Q Consensus 142 ~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~-~~~~vvIiDD~~~~w-- 218 (387)
..|+...++.||+++||+|++.||..+++++||.|.+| .+|+.+|+......+|.+++++. +.++++|+||++++|
T Consensus 82 ~~~~~~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~-~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~ 160 (390)
T COG5190 82 FPFLTKISPLYELHIYTMGTRAYAERIAKIIDPTGKLF-NDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGV 160 (390)
T ss_pred cchhhhhchhcceeeEeeccccchhhhhhccccccccc-ccccccccccccchhhhhhhcCccccccccccccccccCCc
Confidence 99999999999999999999999999999999999999 99999999999888999999985 899999999999999
Q ss_pred -hcCCCCeeEeccccchhhhhh-------------hccCC-CCccccc------------------------------cc
Q 036523 219 -KDHKENLILVGKYNYFKERIR-------------KSKNN-DQKSYSE------------------------------RK 253 (387)
Q Consensus 219 -~~~~~N~I~I~~y~ff~~~~~-------------~~~~~-~~~s~~~------------------------------~~ 253 (387)
.. ..|.+...|+.++..... ..|.+ ....+.+ .+
T Consensus 161 ~d~-~~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~ 239 (390)
T COG5190 161 GDM-NSNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVK 239 (390)
T ss_pred cch-hhhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhc
Confidence 43 468888888554443211 00100 0000000 00
Q ss_pred cCch--------hhhHHHHHHHHHHHHHHhhhhcCC-CccccCchhhhHHHHhhhcccceeeeeccCCCCCCchHHHHHH
Q 036523 254 SDES--------ELNGALVNVLRVLKRVHELFFENP-ENLVWGDVRSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLRRR 324 (387)
Q Consensus 254 ~d~~--------~~D~~L~~l~~~L~~ih~~ff~~~-~~~~~~DVr~il~~~R~~vl~G~~i~fSg~~~~~~~~~~l~~l 324 (387)
.+.. ..|.+|..++..|.++|.-+|... .......|..+|...| +|+++.+.+++.++.+.--.++..+
T Consensus 240 ~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~~ikDis~i 317 (390)
T COG5190 240 VEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGVYIKDISKI 317 (390)
T ss_pred cccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCchhhhHHhh
Confidence 0111 468899999999999998777652 2223445899999988 9999999999988732211123222
Q ss_pred HHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHHHH
Q 036523 325 AEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWIYA 371 (387)
Q Consensus 325 a~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl~~ 371 (387)
| .+-.-||+|+.++.+- +....+.|+.+.|+.+
T Consensus 318 ----~------r~l~~viiId~~p~SY----~~~p~~~i~i~~W~~d 350 (390)
T COG5190 318 ----G------RSLDKVIIIDNSPASY----EFHPENAIPIEKWISD 350 (390)
T ss_pred ----c------cCCCceEEeeCChhhh----hhCccceeccCccccc
Confidence 2 3335799999887665 3445589999999997
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.81 E-value=3.5e-20 Score=183.77 Aligned_cols=170 Identities=26% Similarity=0.330 Sum_probs=140.0
Q ss_pred hcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEcC
Q 036523 80 FGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICTM 159 (387)
Q Consensus 80 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT~ 159 (387)
-...+.+|++|||+||+|+.... ++.. ++...+ ........+||..||++.+||..++++|++++||+
T Consensus 208 ~~~~~k~L~l~lde~l~~S~~~~-~~~~---df~~~~--------e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~ 275 (390)
T COG5190 208 STSPKKTLVLDLDETLVHSSFRY-ITLL---DFLVKV--------EISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTA 275 (390)
T ss_pred CCCCccccccCCCccceeecccc-cccc---chhhcc--------ccccceeEEEEcCChHHHHHHhhhhhhEEEEEEec
Confidence 34677899999999999998532 2221 121111 01112357899999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCceeecccEEeccCCC---CCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEeccccchhh
Q 036523 160 GNRHYAEMIAKLLDPKCEYYISSRLITCEDFK---DTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKYNYFKE 236 (387)
Q Consensus 160 g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~---~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y~ff~~ 236 (387)
+.+.||++|+++||+.+ .| ++|+| |..|. +.|+|||..++++...|+|||++|..|..+++|+|+|.+|
T Consensus 276 s~~~y~~~v~d~l~~~k-~~-~~~lf-r~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W----- 347 (390)
T COG5190 276 SVKRYADPVLDILDSDK-VF-SHRLF-RESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKW----- 347 (390)
T ss_pred chhhhcchHHHhccccc-ee-ehhhh-cccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcc-----
Confidence 99999999999999999 78 88887 88885 4588999999999999999999999999999999999999
Q ss_pred hhhhccCCCCccccccccCchhhhHHHHHHHHHHHHHHhhhhcCCCccccCchhhhHHH
Q 036523 237 RIRKSKNNDQKSYSERKSDESELNGALVNVLRVLKRVHELFFENPENLVWGDVRSFLAK 295 (387)
Q Consensus 237 ~~~~~~~~~~~s~~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~DVr~il~~ 295 (387)
. +++.|.+|.+++++|..|..+ +..||+.++..
T Consensus 348 ------~------------~d~~d~el~~ll~~le~L~~~--------~~~d~~~~l~~ 380 (390)
T COG5190 348 ------I------------SDEHDDELLNLLPFLEDLPDR--------DLKDVSSILQS 380 (390)
T ss_pred ------c------------ccccchhhhhhcccccccccc--------cchhhhhhhhh
Confidence 3 136899999999999999763 47788888765
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.53 E-value=1e-14 Score=109.48 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=54.4
Q ss_pred eeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHH
Q 036523 304 CTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRW 368 (387)
Q Consensus 304 ~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 368 (387)
++|+|||+.+ .++..++++++++||++..+++.++|||||....+.|++.|.++||+||+|+|
T Consensus 1 ~~i~~sg~~~--~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSG--KERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-T--TTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCH--HHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 5799999877 44889999999999999999999999999999999999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.51 E-value=6.6e-14 Score=108.29 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=67.9
Q ss_pred hhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCC--CchHHHHHHhCCCeeeCHHHHHHHH
Q 036523 297 RRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQ--ATEGRRLAEQHNNFLVHPRWIYAAY 373 (387)
Q Consensus 297 R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~--~t~K~~~A~~~gi~IV~~~Wl~~c~ 373 (387)
+.++|+||.+++++..+ ..+..+.++++.+||+++..+++.+||||+.+. .+.|+..|...|++||+++||.+|+
T Consensus 2 ~~~~F~g~~f~i~~~~~--~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDS--DEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp STTTTTTEEEEESSTSS--SHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCCEEEEEccCCC--CCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 56899999999955444 348899999999999999999999999999987 8999999999999999999999996
No 13
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.35 E-value=3.6e-12 Score=97.47 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=65.4
Q ss_pred hcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCC-CceEEEEcCCCchH--HHHHHhCCCeeeCHHHHHHHHHh
Q 036523 299 QILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDS-SVTHVVSTRQATEG--RRLAEQHNNFLVHPRWIYAAYYL 375 (387)
Q Consensus 299 ~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~-~vTHlVa~~~~t~K--~~~A~~~gi~IV~~~Wl~~c~~~ 375 (387)
.+|+|++++|+|.... ..+..+++++..+||++...+++ .+||+|+.+....+ +..|...+++||+++||.+|+..
T Consensus 1 ~~f~g~~~~~~g~~~~-~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~ 79 (80)
T smart00292 1 KLFKGKVFVITGKFDK-NERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKA 79 (80)
T ss_pred CccCCeEEEEeCCCCC-ccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHC
Confidence 4799999999993332 34889999999999999999998 99999999765554 57777889999999999999876
Q ss_pred c
Q 036523 376 W 376 (387)
Q Consensus 376 ~ 376 (387)
|
T Consensus 80 ~ 80 (80)
T smart00292 80 G 80 (80)
T ss_pred c
Confidence 4
No 14
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.34 E-value=5.2e-12 Score=94.40 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=63.0
Q ss_pred ceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchH-HHHHHhCCCeeeCHHHHHHHHH
Q 036523 303 GCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEG-RRLAEQHNNFLVHPRWIYAAYY 374 (387)
Q Consensus 303 G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K-~~~A~~~gi~IV~~~Wl~~c~~ 374 (387)
|+.++|+|..+... +..+.++++.+||++...+++.+||+|+......+ +..|...|++||+++||.+|+.
T Consensus 1 ~~~~~i~g~~~~~~-~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEE-RDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcC-HHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 68899999885334 89999999999999999999999999999876665 8888889999999999999963
No 15
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.32 E-value=1.5e-12 Score=126.11 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=81.7
Q ss_pred hhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHHHHHHHhc
Q 036523 297 RRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWIYAAYYLW 376 (387)
Q Consensus 297 R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl~~c~~~~ 376 (387)
=.++|+|+++|+||+. +|+ ++.|..-|..|||++..+++..+|||||+..+|.||++...+|-.||+-+||.+|..+.
T Consensus 314 l~klL~GVV~VlSGfq-NP~-Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~k 391 (508)
T KOG3226|consen 314 LSKLLEGVVFVLSGFQ-NPE-RSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQK 391 (508)
T ss_pred HHHhhhceEEEEeccc-Cch-HHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHH
Confidence 3578999999999965 567 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 036523 377 SRQAENDYF 385 (387)
Q Consensus 377 ~r~dE~~Y~ 385 (387)
+++|-+.|+
T Consensus 392 k~lp~rrYl 400 (508)
T KOG3226|consen 392 KLLPIRRYL 400 (508)
T ss_pred hhccHHHHH
Confidence 999988886
No 16
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.82 E-value=8.4e-09 Score=111.74 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=78.2
Q ss_pred HhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC-----CCchHHHHHHhCCCeeeCHHHHH
Q 036523 296 IRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR-----QATEGRRLAEQHNNFLVHPRWIY 370 (387)
Q Consensus 296 ~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~-----~~t~K~~~A~~~gi~IV~~~Wl~ 370 (387)
....+|.|++|+|||.++. .+..+.++++.+||++++++ +++||+|++. .++.|+.+|.+.||+||+.+||.
T Consensus 185 ~~~kpL~G~~fviTGtl~~--sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~ 261 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSR--THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLI 261 (815)
T ss_pred ccCCCcCCcEEEEeCCCCC--CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHH
Confidence 4566899999999999974 37899999999999999999 6788999885 24589999999999999999999
Q ss_pred HHHHhcccCCCCCCCC
Q 036523 371 AAYYLWSRQAENDYFP 386 (387)
Q Consensus 371 ~c~~~~~r~dE~~Y~~ 386 (387)
+|+...+.+++..|..
T Consensus 262 d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 262 DSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHhcCCcccchhhhh
Confidence 9999999999998864
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.74 E-value=1.6e-08 Score=111.72 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=78.3
Q ss_pred HhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC---CCchHHHHHHhCCCeeeCHHHHHHH
Q 036523 296 IRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR---QATEGRRLAEQHNNFLVHPRWIYAA 372 (387)
Q Consensus 296 ~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~---~~t~K~~~A~~~gi~IV~~~Wl~~c 372 (387)
...++|.|++|+++|.++ .....+.+.++.+||+++..+++.+||||++. ....|+++|.+.||+||+.+||.+|
T Consensus 389 ~~~~~l~~~~i~i~G~~~--~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds 466 (981)
T PLN03123 389 SESEFLGDLKVSIVGASK--EKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDC 466 (981)
T ss_pred ccCCCcCCeEEEEecCCC--CcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHH
Confidence 456889999999999987 33478889999999999999999999999984 4567899999999999999999999
Q ss_pred HHhcccCCCCCCC
Q 036523 373 YYLWSRQAENDYF 385 (387)
Q Consensus 373 ~~~~~r~dE~~Y~ 385 (387)
.....++|+..|.
T Consensus 467 ~~~~~~~p~~~y~ 479 (981)
T PLN03123 467 FKKKKKLPFDKYK 479 (981)
T ss_pred HhccccCcchhhh
Confidence 9999999988873
No 18
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.42 E-value=8.7e-07 Score=95.06 Aligned_cols=73 Identities=12% Similarity=0.002 Sum_probs=67.0
Q ss_pred hcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHHHHH
Q 036523 299 QILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWIYAA 372 (387)
Q Consensus 299 ~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl~~c 372 (387)
.+|.|.++||||.++... +..+.++++++||+++++|+++|+.||+....+.|..+|.+.||+|++.+.+.+=
T Consensus 592 ~~l~gktfV~TG~l~~~~-R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~ 664 (669)
T PRK14350 592 SFLFGKKFCITGSFNGYS-RSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSY 664 (669)
T ss_pred CccCCcEEEEecccCCCC-HHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHH
Confidence 358999999999997555 8999999999999999999999999999987779999999999999999988763
No 19
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=98.31 E-value=4.6e-06 Score=89.80 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=73.9
Q ss_pred CchhhhHHHHhhh-----------cccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHH
Q 036523 287 GDVRSFLAKIRRQ-----------ILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRL 355 (387)
Q Consensus 287 ~DVr~il~~~R~~-----------vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~ 355 (387)
++.+.++..++.. .|.|.++||||.++... +..+.++++.+||.++++++++|+.||+....+.|..+
T Consensus 566 ~~~~~~i~~L~~~gv~~~~~~~~~~~~g~~~v~TG~l~~~~-R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~k 644 (665)
T PRK07956 566 EENRELIDELLEAGVNMEYKGEEVDLAGKTVVLTGTLEQLS-RDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAK 644 (665)
T ss_pred hhHHHHHHHHHHcCCCccccccCCCccccEEEEeCCCCCCC-HHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHH
Confidence 4556666665531 28899999999997434 89999999999999999999999999999877799999
Q ss_pred HHhCCCeeeCHHHHHHHHH
Q 036523 356 AEQHNNFLVHPRWIYAAYY 374 (387)
Q Consensus 356 A~~~gi~IV~~~Wl~~c~~ 374 (387)
|.+.||+|++.+-+.+.+.
T Consensus 645 A~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 645 AQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred HHHcCCeEEcHHHHHHHHh
Confidence 9999999999988877653
No 20
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=98.29 E-value=2.7e-06 Score=89.70 Aligned_cols=72 Identities=19% Similarity=0.097 Sum_probs=67.0
Q ss_pred hcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHHHH
Q 036523 299 QILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWIYA 371 (387)
Q Consensus 299 ~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl~~ 371 (387)
.+|.|.++||||.+++-. +..+..+++++||+|+.++++++..||++...++|..+|.+.||+|.+.+++.+
T Consensus 593 ~~l~gkt~V~TGtL~~~s-R~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMS-RDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCCCC-HHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHH
Confidence 569999999999998555 899999999999999999999999999999888899999999999999998865
No 21
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.28 E-value=4.9e-06 Score=89.70 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=66.4
Q ss_pred hcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCc-hHHHHHHhCCCeeeCHHHHHHHHH
Q 036523 299 QILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQAT-EGRRLAEQHNNFLVHPRWIYAAYY 374 (387)
Q Consensus 299 ~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t-~K~~~A~~~gi~IV~~~Wl~~c~~ 374 (387)
..|.|.++||||.+.... +..+.++++.+||.++++++++++.||+....+ .|..+|.+.||+|++.+-+.+=+.
T Consensus 608 ~~l~g~~~v~TG~l~~~~-R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYT-RSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCCcEEEEccCCCCCC-HHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 359999999999997444 899999999999999999999999999997555 899999999999999988877544
No 22
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.26 E-value=3.8e-07 Score=82.22 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=66.6
Q ss_pred EeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC----------CceeccccccCC
Q 036523 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD----------TGKKNLDLVLGQ 204 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~----------~~~KdL~~l~~~ 204 (387)
+++.||+.++|+.+. +.++|.|++.+.++..+++.++-.. +| +.+++.++... .+.+-+++++.+
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~f--d~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 157 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CF--DGIFCFDTANPDYLLPKPSPQAYEKALREAGVD 157 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hh--CeEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence 567899999999998 6899999999999999999997654 78 66777665432 123345556667
Q ss_pred CCCeEEEeCChhhhhcCCCCeeE
Q 036523 205 ERGVVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 205 ~~~vvIiDD~~~~w~~~~~N~I~ 227 (387)
++.+++|+|++.-......+|+.
T Consensus 158 ~~~~l~vgD~~~di~aA~~~G~~ 180 (184)
T TIGR01993 158 PERAIFFDDSARNIAAAKALGMK 180 (184)
T ss_pred ccceEEEeCCHHHHHHHHHcCCE
Confidence 89999999998654434455554
No 23
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.22 E-value=2.9e-06 Score=76.63 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=84.4
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC-cHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG-NRH 163 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g-~~~ 163 (387)
.+|+|||.||..-...+-..+.. . ..|...-.-......-+.++||+.++|+.+. +.+.+.|-|++ .+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~ 74 (174)
T TIGR01685 4 VIVFDLDGTLWDHYMISLLGGPF----K-----PVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE 74 (174)
T ss_pred EEEEeCCCCCcCcccccccCCCc----e-----eccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH
Confidence 68999999998765432111110 0 0000000000112345789999999999997 77999999988 999
Q ss_pred HHHHHHHHcCCC--C------ceeecccEEeccCCCC-Cc----eeccccc---cCCCCCeEEEeCChhhhhcCCCCeeE
Q 036523 164 YAEMIAKLLDPK--C------EYYISSRLITCEDFKD-TG----KKNLDLV---LGQERGVVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 164 YA~~i~~~LDP~--~------~~F~~~Ri~srd~~~~-~~----~KdL~~l---~~~~~~vvIiDD~~~~w~~~~~N~I~ 227 (387)
++..+++.++.. | .+| +.+++-++... .. .+.+... +-+++.+++|||++.-......+|+.
T Consensus 75 ~~~~~L~~~~l~~~~~~~~~~~~F--d~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~ 152 (174)
T TIGR01685 75 WAYEILGTFEITYAGKTVPMHSLF--DDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVT 152 (174)
T ss_pred HHHHHHHhCCcCCCCCcccHHHhc--eeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCE
Confidence 999999999865 2 478 55555444321 11 1112222 24679999999999877666677776
Q ss_pred ec
Q 036523 228 VG 229 (387)
Q Consensus 228 I~ 229 (387)
+.
T Consensus 153 ~i 154 (174)
T TIGR01685 153 SC 154 (174)
T ss_pred EE
Confidence 63
No 24
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.20 E-value=1.2e-06 Score=75.07 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=59.4
Q ss_pred eeCccHHHHHHHHh-hcccEEEEcCC-cHHHHHHHHHHcCC------CCceeecccEEeccCCC--CCceecccccc--C
Q 036523 136 KLRPYIRSFLKEAC-KMYDIYICTMG-NRHYAEMIAKLLDP------KCEYYISSRLITCEDFK--DTGKKNLDLVL--G 203 (387)
Q Consensus 136 ~lRPgl~eFL~~ls-~~yel~IyT~g-~~~YA~~i~~~LDP------~~~~F~~~Ri~srd~~~--~~~~KdL~~l~--~ 203 (387)
++.||+.++|+.+. +.+.++|.|++ .+.|+..+++...+ -..+| ..+++.++.+ ..+.+-+++++ -
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f--~~~~~~~~~pkp~~~~~a~~~lg~~~ 106 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYF--DPLTIGYWLPKSPRLVEIALKLNGVL 106 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhh--hhhhhcCCCcHHHHHHHHHHHhcCCC
Confidence 57899999999997 68999999999 99999999998762 12356 3333333322 22445566677 6
Q ss_pred CCCCeEEEeCChhh
Q 036523 204 QERGVVIVDDTAEV 217 (387)
Q Consensus 204 ~~~~vvIiDD~~~~ 217 (387)
.++.+++|||++..
T Consensus 107 ~p~~~l~igDs~~n 120 (128)
T TIGR01681 107 KPKSILFVDDRPDN 120 (128)
T ss_pred CcceEEEECCCHhH
Confidence 88999999999854
No 25
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=98.15 E-value=5.4e-06 Score=81.69 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=63.0
Q ss_pred cccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCc--hHHHHHHhCCCeeeCHHHHHHH
Q 036523 300 ILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQAT--EGRRLAEQHNNFLVHPRWIYAA 372 (387)
Q Consensus 300 vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t--~K~~~A~~~gi~IV~~~Wl~~c 372 (387)
.+.|.+|||||.+. ..+.+++++++.+||.|.++++++++.||++...+ .|.++|.+.||+|++.+=+.+=
T Consensus 232 l~~g~~~v~TG~l~--~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~l 304 (313)
T PRK06063 232 LVQGMRVALSAEVS--RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLEL 304 (313)
T ss_pred ccCCCEEEEecCCC--CCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHH
Confidence 37899999999987 34899999999999999999999999999997544 8999999999999998766553
No 26
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.15 E-value=1.3e-06 Score=80.73 Aligned_cols=92 Identities=23% Similarity=0.182 Sum_probs=72.2
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
.+++.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. || +.+++.+++.. .+.+-+++++-+.+
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f--~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 156 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FF--DVVITLDDVEHAKPDPEPVLKALELLGAKPE 156 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ce--eEEEecCcCCCCCCCcHHHHHHHHHcCCCHH
Confidence 4678899999999997 579999999999999999999998765 79 77887766542 12344555555678
Q ss_pred CeEEEeCChhhhhcCCCCeeEe
Q 036523 207 GVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I 228 (387)
.+++|+|++.-......+|++.
T Consensus 157 ~~~~iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 157 EALMVGDNHHDILAGKNAGTKT 178 (214)
T ss_pred HEEEECCCHHHHHHHHHCCCeE
Confidence 9999999997665555667754
No 27
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.14 E-value=1.1e-06 Score=84.28 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=74.3
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
.+.+.||+.++|+.+. ..|.++|-|++++.++..+++.++-.. || +.+++.++... .+.+-+++++-+++
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F--d~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~ 183 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FF--SVVLAAEDVYRGKPDPEMFMYAAERLGFIPE 183 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hC--cEEEecccCCCCCCCHHHHHHHHHHhCCChH
Confidence 3678999999999998 569999999999999999999998665 78 77887777642 24456667777789
Q ss_pred CeEEEeCChhhhhcCCCCeeEec
Q 036523 207 GVVIVDDTAEVWKDHKENLILVG 229 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I~ 229 (387)
.+|+|+|+..-.......|+.+.
T Consensus 184 ~~l~IgDs~~Di~aA~~aG~~~i 206 (260)
T PLN03243 184 RCIVFGNSNSSVEAAHDGCMKCV 206 (260)
T ss_pred HeEEEcCCHHHHHHHHHcCCEEE
Confidence 99999999876655556677543
No 28
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.11 E-value=7.6e-06 Score=79.21 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=63.5
Q ss_pred hhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeC-ccHHHHHHHHhh-cccEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLR-PYIRSFLKEACK-MYDIY 155 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lR-Pgl~eFL~~ls~-~yel~ 155 (387)
.+.-+.+..+|+|||||||.... -|.+| ||+.++|+++.+ .+.++
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~---------------------------------~v~irdPgV~EaL~~LkekGikLa 166 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEE---------------------------------PVRIRDPRIYDSLTELKKRGCILV 166 (301)
T ss_pred ccccccceEEEEecCCCCcCCCC---------------------------------ccccCCHHHHHHHHHHHHCCCEEE
Confidence 35556667999999999998742 14577 999999999995 58999
Q ss_pred EEcCCcHHHHHHHHHHcCCCCceeecccEEeccCC
Q 036523 156 ICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDF 190 (387)
Q Consensus 156 IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~ 190 (387)
|+|++.+.+|..+++.++..+ +| +.|++.++.
T Consensus 167 IaTS~~Re~v~~~L~~lGLd~-YF--dvIIs~Gdv 198 (301)
T TIGR01684 167 LWSYGDRDHVVESMRKVKLDR-YF--DIIISGGHK 198 (301)
T ss_pred EEECCCHHHHHHHHHHcCCCc-cc--CEEEECCcc
Confidence 999999999999999999986 78 667765543
No 29
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.11 E-value=9.4e-06 Score=78.64 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=63.2
Q ss_pred hhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeC-ccHHHHHHHHhh-cccEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLR-PYIRSFLKEACK-MYDIY 155 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lR-Pgl~eFL~~ls~-~yel~ 155 (387)
.+..+.+..+|+||||||+.... -|.+| |++.++|+++.+ .+.+.
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~---------------------------------~v~irdp~V~EtL~eLkekGikLa 168 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEE---------------------------------PVRIRDPFVYDSLDELKERGCVLV 168 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCC---------------------------------ccccCChhHHHHHHHHHHCCCEEE
Confidence 45666777999999999998742 14578 999999999995 69999
Q ss_pred EEcCCcHHHHHHHHHHcCCCCceeecccEEeccCC
Q 036523 156 ICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDF 190 (387)
Q Consensus 156 IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~ 190 (387)
|+|+|.++++..+++.++..+ +| +-|++.++.
T Consensus 169 IvTNg~Re~v~~~Le~lgL~~-yF--DvII~~g~i 200 (303)
T PHA03398 169 LWSYGNREHVVHSLKETKLEG-YF--DIIICGGRK 200 (303)
T ss_pred EEcCCChHHHHHHHHHcCCCc-cc--cEEEECCCc
Confidence 999999999999999999875 77 556655543
No 30
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=98.05 E-value=1.2e-05 Score=79.04 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=62.0
Q ss_pred hcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC---------CCchHHHHHHhC-----CCeee
Q 036523 299 QILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR---------QATEGRRLAEQH-----NNFLV 364 (387)
Q Consensus 299 ~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~---------~~t~K~~~A~~~-----gi~IV 364 (387)
..|.|-++||||.+..-. +.++.++++.+||.|+++++++||.||++. ..+.|.++|.+. ||+|+
T Consensus 219 ~~l~g~~~vfTG~l~~~~-R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 219 TAFKEEVVVFTGGLASMT-RDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred ccccCCEEEEccccCCCC-HHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 469999999999996444 899999999999999999999999999984 346899999886 89999
Q ss_pred CHHHHHH
Q 036523 365 HPRWIYA 371 (387)
Q Consensus 365 ~~~Wl~~ 371 (387)
+.+=+++
T Consensus 298 ~E~~f~~ 304 (309)
T PRK06195 298 NEEEFLQ 304 (309)
T ss_pred cHHHHHH
Confidence 9864443
No 31
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.00 E-value=4.1e-06 Score=78.50 Aligned_cols=92 Identities=13% Similarity=-0.039 Sum_probs=70.6
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
.+.+.||+.++|+.+. +.+.+.|-|++...++..+++.++-.. +| +.+++.+++.. .+.+-+++++-+++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~ 169 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RC--AVLIGGDTLAERKPHPLPLLVAAERIGVAPT 169 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cc--cEEEecCcCCCCCCCHHHHHHHHHHhCCChh
Confidence 4688999999999997 568999999999999999999987655 68 66776665432 13445566666789
Q ss_pred CeEEEeCChhhhhcCCCCeeEe
Q 036523 207 GVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I 228 (387)
.+++|+|++.-.......|+..
T Consensus 170 ~~l~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 170 DCVYVGDDERDILAARAAGMPS 191 (229)
T ss_pred hEEEeCCCHHHHHHHHHCCCcE
Confidence 9999999987665444556654
No 32
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.99 E-value=3.6e-06 Score=84.75 Aligned_cols=91 Identities=10% Similarity=0.099 Sum_probs=73.2
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
+.+.||+.+||+.+. ..+.+.|-|++.+.++..+++.++-.. || +.|++.++... .+.+-+++++-+++.
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yF--d~Iv~sddv~~~KP~Peifl~A~~~lgl~Pee 291 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FF--SVIVAAEDVYRGKPDPEMFIYAAQLLNFIPER 291 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-Hc--eEEEecCcCCCCCCCHHHHHHHHHHcCCCccc
Confidence 567899999999997 679999999999999999999998765 89 78888877642 234556667778899
Q ss_pred eEEEeCChhhhhcCCCCeeEe
Q 036523 208 VVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~I 228 (387)
+|+|+|++.-.......|+.+
T Consensus 292 cl~IGDS~~DIeAAk~AGm~~ 312 (381)
T PLN02575 292 CIVFGNSNQTVEAAHDARMKC 312 (381)
T ss_pred EEEEcCCHHHHHHHHHcCCEE
Confidence 999999997666555566654
No 33
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.99 E-value=1.3e-05 Score=86.21 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=61.9
Q ss_pred cccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHH
Q 036523 300 ILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRW 368 (387)
Q Consensus 300 vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 368 (387)
.|.|.++||||.++... +..+.++++.+||.++++++++|+.||+....+.|..+|.+.||+|++.+.
T Consensus 584 ~l~gk~~v~TG~l~~~~-R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQMS-RDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CccCcEEEEeccCCCCC-HHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 58899999999987444 899999999999999999999999999998767899999999999998754
No 34
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.98 E-value=1.8e-05 Score=65.70 Aligned_cols=102 Identities=22% Similarity=0.182 Sum_probs=69.4
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh-cccEEEEcCCcHHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK-MYDIYICTMGNRHY 164 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~-~yel~IyT~g~~~Y 164 (387)
++|||+|+||+........ .....++|++.++|+.+.+ .+.++|.|++.+.+
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~ 53 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------------------------IEELELYPGVKEALKELKEKGIKLALATNKSRRE 53 (139)
T ss_pred CeEEccCCceEccCccccc---------------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH
Confidence 4799999999888642100 1235789999999999996 49999999999999
Q ss_pred HHHHHHHcCCCCceeecccEEeccCCCCC----------------------ceeccccccCCCCCeEEEeCChhh
Q 036523 165 AEMIAKLLDPKCEYYISSRLITCEDFKDT----------------------GKKNLDLVLGQERGVVIVDDTAEV 217 (387)
Q Consensus 165 A~~i~~~LDP~~~~F~~~Ri~srd~~~~~----------------------~~KdL~~l~~~~~~vvIiDD~~~~ 217 (387)
+..+++.+.... +| ..+++.+..... +..-++.+....+.++.+||++.-
T Consensus 54 ~~~~~~~~~~~~-~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d 125 (139)
T cd01427 54 VLELLEELGLDD-YF--DPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLND 125 (139)
T ss_pred HHHHHHHcCCch-hh--hheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHH
Confidence 999999886543 34 445544332210 001112222346789999999853
No 35
>COG5275 BRCT domain type II [General function prediction only]
Probab=97.93 E-value=2.2e-05 Score=71.78 Aligned_cols=79 Identities=14% Similarity=0.028 Sum_probs=69.8
Q ss_pred HHHHhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC-CCchHHHHHHhCCCeeeCHHHHHH
Q 036523 293 LAKIRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR-QATEGRRLAEQHNNFLVHPRWIYA 371 (387)
Q Consensus 293 l~~~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~-~~t~K~~~A~~~gi~IV~~~Wl~~ 371 (387)
.++..+..|.|.+|||+|.++.-. +.....++..+||.|+...+.++|.||+.. .|..|+..+++++|++++.+=+..
T Consensus 149 ~peg~~~cL~G~~fVfTG~l~Tls-R~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~ 227 (276)
T COG5275 149 VPEGERECLKGKVFVFTGDLKTLS-RDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDS 227 (276)
T ss_pred CCCCCcccccccEEEEeccccccc-chhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHH
Confidence 456788999999999999998444 788899999999999999999999999985 789999999999999999877665
Q ss_pred H
Q 036523 372 A 372 (387)
Q Consensus 372 c 372 (387)
-
T Consensus 228 L 228 (276)
T COG5275 228 L 228 (276)
T ss_pred H
Confidence 3
No 36
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.90 E-value=3.4e-06 Score=81.52 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=66.9
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC---CceeccccccCCCCCeE
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD---TGKKNLDLVLGQERGVV 209 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~---~~~KdL~~l~~~~~~vv 209 (387)
.+.+-||+.++|+.|. +.+.+.|.|++.+.++..+++.++-.. +| +.+++.++... .+.+-+++++.+.+.++
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F--~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l 216 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LF--SVVQAGTPILSKRRALSQLVAREGWQPAAVM 216 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-he--EEEEecCCCCCCHHHHHHHHHHhCcChhHEE
Confidence 3567899999999997 679999999999999999999998765 78 56666554321 11222334444678899
Q ss_pred EEeCChhhhhcCCCCeeEe
Q 036523 210 IVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 210 IiDD~~~~w~~~~~N~I~I 228 (387)
+|+|++.-.......|+..
T Consensus 217 ~IGDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 217 YVGDETRDVEAARQVGLIA 235 (273)
T ss_pred EECCCHHHHHHHHHCCCeE
Confidence 9999986554444566654
No 37
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.87 E-value=5.5e-06 Score=86.71 Aligned_cols=80 Identities=15% Similarity=0.302 Sum_probs=70.4
Q ss_pred hhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHHHHHHHhcc
Q 036523 298 RQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWIYAAYYLWS 377 (387)
Q Consensus 298 ~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl~~c~~~~~ 377 (387)
...|+|++.||+|..+ . ...+..+++.|||.|..+.+.++||+||.+.+.+|+..|.-. .+++-|+||.+| |+
T Consensus 116 ~~~m~~vvlcfTg~rk--k-~e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a---w~ 188 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERK--K-KEELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA---WK 188 (850)
T ss_pred chhhcCceeeeeccch--h-hHHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh---hc
Confidence 3478999999999887 3 338999999999999999999999999999999998877766 999999999999 88
Q ss_pred cCCCCCC
Q 036523 378 RQAENDY 384 (387)
Q Consensus 378 r~dE~~Y 384 (387)
+.++..|
T Consensus 189 ~rn~~yf 195 (850)
T KOG3524|consen 189 HRNDSYF 195 (850)
T ss_pred Ccchhhh
Confidence 8776554
No 38
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.87 E-value=2.5e-05 Score=66.56 Aligned_cols=109 Identities=20% Similarity=0.127 Sum_probs=71.5
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCc---
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGN--- 161 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~--- 161 (387)
.|+||+||||++.... ..+. ....+.||+.++|+.+. +.+.++|.|++.
T Consensus 2 ~~~~D~dgtL~~~~~~--~~~~-------------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~ 54 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPY--VDDE-------------------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIG 54 (132)
T ss_pred EEEEeCCCceecCCCC--CCCH-------------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCcccc
Confidence 6899999999964210 0010 12457899999999997 669999999999
Q ss_pred -----HHHHHHHHHHcCCCCceeecccEEeccCCC----CCceeccccc-cCCCCCeEEEeCC-h-hhhhcCCCCeeE
Q 036523 162 -----RHYAEMIAKLLDPKCEYYISSRLITCEDFK----DTGKKNLDLV-LGQERGVVIVDDT-A-EVWKDHKENLIL 227 (387)
Q Consensus 162 -----~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~----~~~~KdL~~l-~~~~~~vvIiDD~-~-~~w~~~~~N~I~ 227 (387)
..++.++++.++-.- .| +++..... ..+.+-++++ .-+++.+++|+|+ . ++... ..+|+.
T Consensus 55 ~~~~~~~~~~~~l~~~~l~~-~~----~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A-~~~Gi~ 126 (132)
T TIGR01662 55 RGKFSSGRVARRLEELGVPI-DV----LYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAA-KRAGLA 126 (132)
T ss_pred ccHHHHHHHHHHHHHCCCCE-EE----EEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHH-HHCCCe
Confidence 888999999887541 22 22222221 1233445566 3678899999994 4 44432 344443
No 39
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.86 E-value=1.4e-05 Score=69.81 Aligned_cols=116 Identities=15% Similarity=0.045 Sum_probs=71.4
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcH--
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNR-- 162 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~-- 162 (387)
+|+||+||||+...... .... +--+++.||+.++|+.+. +.|.++|.|++.+
T Consensus 2 ~~~~d~dgtl~~~~~~~-~~~~------------------------~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~ 56 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSD-YPRS------------------------LDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIG 56 (147)
T ss_pred eEEEeCCCceeccCCcc-cCCC------------------------HHHeEEcCChHHHHHHHHHCCCEEEEEeCCCccc
Confidence 68999999999987421 1000 011367899999999997 7799999999874
Q ss_pred -------------HHHHHHHHHcCCCC-ceeecccEEeccCCC--C----CceeccccccCCCCCeEEEeCChhhhhcCC
Q 036523 163 -------------HYAEMIAKLLDPKC-EYYISSRLITCEDFK--D----TGKKNLDLVLGQERGVVIVDDTAEVWKDHK 222 (387)
Q Consensus 163 -------------~YA~~i~~~LDP~~-~~F~~~Ri~srd~~~--~----~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~ 222 (387)
.++..+++.++..- .+| ...+.+.++.. . .+.+-+++++-+++.+++|+|++.-.....
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~ 135 (147)
T TIGR01656 57 RGYFSAEAFRAPNGRVLELLRQLGVAVDGVL-FCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAAR 135 (147)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhCCCceeEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHH
Confidence 57777777776531 112 11111112111 1 123334455557889999999875443333
Q ss_pred CCeeE
Q 036523 223 ENLIL 227 (387)
Q Consensus 223 ~N~I~ 227 (387)
..|+.
T Consensus 136 ~~Gi~ 140 (147)
T TIGR01656 136 NAGLA 140 (147)
T ss_pred HCCCC
Confidence 44443
No 40
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.85 E-value=2.3e-05 Score=85.01 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=86.7
Q ss_pred cCchhhhHHHHhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC-CCchHHHHHHhCCCeee
Q 036523 286 WGDVRSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR-QATEGRRLAEQHNNFLV 364 (387)
Q Consensus 286 ~~DVr~il~~~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~-~~t~K~~~A~~~gi~IV 364 (387)
..+-++....++...|.||.||.+|+.. .+++.+..++-.+||+....++..|+|++... ..|+||++|.+++++||
T Consensus 89 ~~~~~~l~~~~~~p~~~~~~Vc~tgl~~--~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~ 166 (811)
T KOG1929|consen 89 IRLLDPLRDTMKCPGFFGLKVCLTGLSG--DEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVV 166 (811)
T ss_pred CccCccchhhhcCCcccceEEEecccch--HHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccc
Confidence 4455666778899999999999999764 44899999999999999999999999988876 45599999999999999
Q ss_pred CHHHHHHHHHhcccCCCCCCC
Q 036523 365 HPRWIYAAYYLWSRQAENDYF 385 (387)
Q Consensus 365 ~~~Wl~~c~~~~~r~dE~~Y~ 385 (387)
+.+|+++|..+....+.+.|.
T Consensus 167 ~~~w~~~s~~~~~~~~~~~~e 187 (811)
T KOG1929|consen 167 SDDWLFDSIEKTAVLETKPYE 187 (811)
T ss_pred cHHHHhhhhcccccccccccc
Confidence 999999999999999988885
No 41
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.84 E-value=1.1e-05 Score=87.37 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=84.9
Q ss_pred CchhhhHHHHhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCH
Q 036523 287 GDVRSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHP 366 (387)
Q Consensus 287 ~DVr~il~~~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~ 366 (387)
.-++.+....=.++|+||.|++++.-- .++..+...+..+||.....+....||||+++....|+..|.++++++|+|
T Consensus 480 ~~~~~vp~~~l~~~~e~~~~~~s~~~~--~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~vT~ 557 (811)
T KOG1929|consen 480 DNLRPVPAAALSQPFENLTISNSQSAE--AEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIVTP 557 (811)
T ss_pred hhcCcchhhcccccccCceEEeeechH--HHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCccCh
Confidence 345667777778899999999986332 237788999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCCC
Q 036523 367 RWIYAAYYLWSRQAENDYFP 386 (387)
Q Consensus 367 ~Wl~~c~~~~~r~dE~~Y~~ 386 (387)
+||..|..+.+..+.+-|..
T Consensus 558 ~wL~e~~rq~~~~~~e~~l~ 577 (811)
T KOG1929|consen 558 DWLYECVRQNKGERNEGFLN 577 (811)
T ss_pred hHHHhhccccCcccceeecc
Confidence 99999999999998887754
No 42
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.82 E-value=1.8e-05 Score=76.83 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=87.6
Q ss_pred CCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC
Q 036523 82 QRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG 160 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g 160 (387)
.++..+++|+|+||....... +.+ + .. . .-..+.|++.++|+.+. +.+.++|.|+.
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~---~~~--~----~~-~-------------~~~~~~~~~~~~l~~l~~~g~~i~i~T~r 212 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRS---PYD--W----TK-V-------------KEDKPNPMVVELVKMYKAAGYEIIVVSGR 212 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCC---ccc--h----hh-c-------------ccCCCChhHHHHHHHHHhCCCEEEEEeCC
Confidence 346789999999999875321 111 0 00 0 12357899999999997 56999999999
Q ss_pred cHHHHHHHHHHcCCCCceeecccEEeccC-------CCC------CceeccccccC-CCCCeEEEeCChhhhhcCCCCee
Q 036523 161 NRHYAEMIAKLLDPKCEYYISSRLITCED-------FKD------TGKKNLDLVLG-QERGVVIVDDTAEVWKDHKENLI 226 (387)
Q Consensus 161 ~~~YA~~i~~~LDP~~~~F~~~Ri~srd~-------~~~------~~~KdL~~l~~-~~~~vvIiDD~~~~w~~~~~N~I 226 (387)
...++..+++.|+..+.+| +.++..+. ... ...+.|..++. +.+.++.|||++........+||
T Consensus 213 ~~~~~~~~l~~l~~~~~~f--~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi 290 (300)
T PHA02530 213 DGVCEEDTVEWLRQTDIWF--DDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGL 290 (300)
T ss_pred ChhhHHHHHHHHHHcCCch--hhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCC
Confidence 9999999999999988788 56666652 211 12234455554 56899999999987776667887
Q ss_pred Ee
Q 036523 227 LV 228 (387)
Q Consensus 227 ~I 228 (387)
++
T Consensus 291 ~~ 292 (300)
T PHA02530 291 EC 292 (300)
T ss_pred eE
Confidence 65
No 43
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.82 E-value=1.9e-05 Score=74.79 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=83.0
Q ss_pred hhhcCCceEEEEeCCCceeeeecC--CC---CCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hc
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDL--DM---LAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KM 151 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~--~~---~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~ 151 (387)
.|-.++++.++|||||||++|+.. .+ .++++..++..+ .....|. ....-.....|++.+||+.+. +.
T Consensus 57 ~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~-----~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G 130 (237)
T TIGR01672 57 SLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQ-----VFWEKVN-NGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred hcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcCh-----HHHHHHH-HhcccCCcchhHHHHHHHHHHHCC
Confidence 455667789999999999999862 11 111110010000 0000000 011123345566999999997 67
Q ss_pred ccEEEEcCC----cHHHHHHHHHHcCCCCceeecccEEeccCCCC-CceeccccccCCCCCeEEEeCChhhhhcCCCCee
Q 036523 152 YDIYICTMG----NRHYAEMIAKLLDPKCEYYISSRLITCEDFKD-TGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLI 226 (387)
Q Consensus 152 yel~IyT~g----~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~-~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I 226 (387)
+.++|.|+. .+.++..+++.++-.. +| .-+++.++... ...|. ........++.|-|+..=......+|+
T Consensus 131 ~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f--~~i~~~d~~~~~Kp~~~--~~l~~~~i~i~vGDs~~DI~aAk~AGi 205 (237)
T TIGR01672 131 DAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MN--PVIFAGDKPGQYQYTKT--QWIQDKNIRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHhCCch-he--eEEECCCCCCCCCCCHH--HHHHhCCCeEEEeCCHHHHHHHHHCCC
Confidence 999999998 7789999999888765 67 66776555432 11121 111234457899999865554445565
Q ss_pred E
Q 036523 227 L 227 (387)
Q Consensus 227 ~ 227 (387)
.
T Consensus 206 ~ 206 (237)
T TIGR01672 206 R 206 (237)
T ss_pred C
Confidence 4
No 44
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.76 E-value=5.7e-06 Score=75.35 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=62.7
Q ss_pred EEeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCC---ceeecccEEeccCCCC---CceeccccccCCCCC
Q 036523 134 LVKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKC---EYYISSRLITCEDFKD---TGKKNLDLVLGQERG 207 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~---~~F~~~Ri~srd~~~~---~~~KdL~~l~~~~~~ 207 (387)
.+++.||+.++|+.|.+.+.+++-|++.......+.+.+...+ .+| +.+++.++... .+.+-+++++ ++.
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f--~~i~~~~~~~~kp~~~~~a~~~~~--~~~ 147 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAF--SEVLMCGHDESKEKLFIKAKEKYG--DRV 147 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcc--cEEEEeccCcccHHHHHHHHHHhC--CCc
Confidence 3678999999999999878888888887765555666664432 145 44555555432 1122333444 678
Q ss_pred eEEEeCChhhhhcCCCC--eeEeccc
Q 036523 208 VVIVDDTAEVWKDHKEN--LILVGKY 231 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N--~I~I~~y 231 (387)
+|+|||+..-......+ ||++--+
T Consensus 148 ~v~vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 148 VCFVDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred EEEeCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999999877665667 7865433
No 45
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.76 E-value=3.2e-05 Score=76.31 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=72.2
Q ss_pred CceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCc
Q 036523 83 RKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGN 161 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~ 161 (387)
.+.+||+|||+||..-..- +.. ... .. +....||+.++|+.+. +.+.+.|.|+..
T Consensus 2 ~~k~~v~DlDnTlw~gv~~----e~g--~~~------------i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~n~ 57 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLG----EDG--IDN------------LN------LSPLHKTLQEKIKTLKKQGFLLALASKND 57 (320)
T ss_pred CeEEEEEcCCCCCCCCEEc----cCC--ccc------------cc------cCccHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3569999999999976531 100 000 00 1234699999999998 679999999999
Q ss_pred HHHHHHHHHH----cCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCChhhh
Q 036523 162 RHYAEMIAKL----LDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDTAEVW 218 (387)
Q Consensus 162 ~~YA~~i~~~----LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~~~~w 218 (387)
+..|..+++. +.... +| ..-..+...-.....+-++.++-+++.+|+|||++.-.
T Consensus 58 ~~~a~~~l~~~~~~~~~~~-~f-~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 58 EDDAKKVFERRKDFILQAE-DF-DARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred HHHHHHHHHhCccccCcHH-He-eEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 9999999987 54443 56 22222211111122333455566788999999998643
No 46
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.73 E-value=5.6e-05 Score=67.39 Aligned_cols=119 Identities=14% Similarity=0.067 Sum_probs=77.1
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC---
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG--- 160 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g--- 160 (387)
..|.||.||||++.... . +... ..-.+++-||+.++|+.|. +.|.++|.||.
T Consensus 2 ~~~~~d~dg~l~~~~~~----~----~~~~----------------~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~ 57 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS----D----FQVD----------------ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGL 57 (161)
T ss_pred CEEEEeCCCCccccCCC----c----cccC----------------CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccc
Confidence 47899999999995421 0 0000 0013678899999999998 47999999996
Q ss_pred ------------cHHHHHHHHHHcCCCCceeecccEEe----ccCCCCC------ceeccccccCCCCCeEEEeCChhhh
Q 036523 161 ------------NRHYAEMIAKLLDPKCEYYISSRLIT----CEDFKDT------GKKNLDLVLGQERGVVIVDDTAEVW 218 (387)
Q Consensus 161 ------------~~~YA~~i~~~LDP~~~~F~~~Ri~s----rd~~~~~------~~KdL~~l~~~~~~vvIiDD~~~~w 218 (387)
...++..+++.++.. | ...+++ .+++... +..-++.++.+.+.+++|+|+..-.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~gl~---f-d~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di 133 (161)
T TIGR01261 58 GTPSFPQADFDGPHNLMLQIFRSQGII---F-DDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDM 133 (161)
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHCCCc---e-eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHH
Confidence 467888888888775 7 344454 2443211 1122334445778999999997533
Q ss_pred hcCCCCeeEeccc
Q 036523 219 KDHKENLILVGKY 231 (387)
Q Consensus 219 ~~~~~N~I~I~~y 231 (387)
.....+|+..--+
T Consensus 134 ~~A~~aGi~~i~~ 146 (161)
T TIGR01261 134 QLAENLGIRGIQY 146 (161)
T ss_pred HHHHHCCCeEEEE
Confidence 3344566665444
No 47
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.69 E-value=8.8e-05 Score=66.41 Aligned_cols=102 Identities=20% Similarity=0.047 Sum_probs=65.0
Q ss_pred ceEEEEeCCCceeeeecCCCC--CccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC
Q 036523 84 KLQLVLDLDHTLLHATDLDML--APDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG 160 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~--~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g 160 (387)
+..++||+||||+.+...... .|+ -+..+-||+.+.|+.+. +.|.+.|.|++
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~-------------------------~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~ 67 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSAS-------------------------DWRFLYPEIPAKLQELDDEGYKIVIFTNQ 67 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChH-------------------------HeEEecCCHHHHHHHHHHCCCEEEEEeCC
Confidence 447899999999986531100 111 12335699999999996 78999999998
Q ss_pred cHH------------HHHHHHHHcCCCCceeecccEEeccCCC--C----Cceecccccc--CCCCCeEEEeCCh
Q 036523 161 NRH------------YAEMIAKLLDPKCEYYISSRLITCEDFK--D----TGKKNLDLVL--GQERGVVIVDDTA 215 (387)
Q Consensus 161 ~~~------------YA~~i~~~LDP~~~~F~~~Ri~srd~~~--~----~~~KdL~~l~--~~~~~vvIiDD~~ 215 (387)
... ++..+++.++... + -+++.++.. . .+..-+++++ .+++.+++|.|++
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~---~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 68 SGIGRGKLSAESFKNKIEAFLEKLKVPI--Q---VLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred cccccCcccHHHHHHHHHHHHHHcCCCE--E---EEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 763 5667777776532 2 233333221 1 1122244455 4678999999996
No 48
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.62 E-value=0.00015 Score=77.39 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=68.9
Q ss_pred hhcccceee-eeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEE--cCCCchHHHHHHhCCCeeeCHHHHHHHHH
Q 036523 298 RQILAGCTL-FFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVS--TRQATEGRRLAEQHNNFLVHPRWIYAAYY 374 (387)
Q Consensus 298 ~~vl~G~~i-~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa--~~~~t~K~~~A~~~gi~IV~~~Wl~~c~~ 374 (387)
..+|.|+.+ ++||....+. ...+.+++..+||.++.++.+..||.|+ ....|.+-.+|.+.++-||+|.||.+|..
T Consensus 631 s~if~gl~f~Vlsgt~~~~t-k~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc~ 709 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHT-KAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCCK 709 (881)
T ss_pred hhhhcCeeEEEecCCccccc-HHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHHh
Confidence 568999987 5666554333 6789999999999999999999999996 45566677788888999999999999998
Q ss_pred hcccCCCCC
Q 036523 375 LWSRQAEND 383 (387)
Q Consensus 375 ~~~r~dE~~ 383 (387)
..+-++=.+
T Consensus 710 ~~~l~p~~P 718 (881)
T KOG0966|consen 710 KQRLLPWLP 718 (881)
T ss_pred hhhcccccc
Confidence 877565443
No 49
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.61 E-value=0.0002 Score=64.51 Aligned_cols=113 Identities=10% Similarity=-0.065 Sum_probs=69.3
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh-cccEEEEcCCcH
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK-MYDIYICTMGNR 162 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~-~yel~IyT~g~~ 162 (387)
...|+||+||||+-.... -.+ . .-.+.+.||+.++|+.+.+ .|.+.|.|++++
T Consensus 3 ~~~~~~d~~~t~~~~~~~----~~~--~--------------------~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG----YVK--S--------------------PDEWIPIPGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred ccEEEEECCCCcccCCcc----ccC--C--------------------HHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 358999999998655310 000 0 0024578999999999985 699999999873
Q ss_pred ---------------HHHHHHHHHcCCCCceeecccEEeccC-----CC------CCceeccccccCCCCCeEEEeCChh
Q 036523 163 ---------------HYAEMIAKLLDPKCEYYISSRLITCED-----FK------DTGKKNLDLVLGQERGVVIVDDTAE 216 (387)
Q Consensus 163 ---------------~YA~~i~~~LDP~~~~F~~~Ri~srd~-----~~------~~~~KdL~~l~~~~~~vvIiDD~~~ 216 (387)
++...+++.++ .+| ..++.... .. ..+.+-++.++.+++.+++|+|++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~l~~~g---~~f--~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~ 131 (181)
T PRK08942 57 IARGLFTEAQLNALHEKMDWSLADRG---GRL--DGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLR 131 (181)
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHcC---Ccc--ceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHH
Confidence 34444454443 236 34443221 11 1133455556667899999999985
Q ss_pred hhhcCCCCeeE
Q 036523 217 VWKDHKENLIL 227 (387)
Q Consensus 217 ~w~~~~~N~I~ 227 (387)
-.......|+.
T Consensus 132 Di~~A~~aG~~ 142 (181)
T PRK08942 132 DLQAAAAAGVT 142 (181)
T ss_pred HHHHHHHCCCe
Confidence 44333445553
No 50
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.59 E-value=0.00032 Score=67.30 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=62.0
Q ss_pred hhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcc-cEEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMY-DIYI 156 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~y-el~I 156 (387)
.+.-+.+-++|+|||.|||....... ..-|.+.+-|.++.+.+ -+++
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~~v~--------------------------------Ir~~~v~~sL~~Lk~~g~vLvL 163 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEGDVR--------------------------------IRDPAVYDSLRELKEQGCVLVL 163 (297)
T ss_pred hccCCCCcEEEEECCCcccccCCccc--------------------------------cCChHHHHHHHHHHHcCCEEEE
Confidence 45556777999999999998763100 12388999999999665 8999
Q ss_pred EcCCcHHHHHHHHHHcCCCCceeecccEEeccCC
Q 036523 157 CTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDF 190 (387)
Q Consensus 157 yT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~ 190 (387)
|+.|+++|+..-++.++-.+ +| +-|+++..-
T Consensus 164 WSyG~~eHV~~sl~~~~L~~-~F--d~ii~~G~~ 194 (297)
T PF05152_consen 164 WSYGNREHVRHSLKELKLEG-YF--DIIICGGNK 194 (297)
T ss_pred ecCCCHHHHHHHHHHhCCcc-cc--EEEEeCCcc
Confidence 99999999999999999885 79 778876543
No 51
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=97.58 E-value=0.00011 Score=77.99 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=68.6
Q ss_pred ceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC------CCchHHHHHHhCCCeeeCHHHHHHHHHhc
Q 036523 303 GCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR------QATEGRRLAEQHNNFLVHPRWIYAAYYLW 376 (387)
Q Consensus 303 G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~------~~t~K~~~A~~~gi~IV~~~Wl~~c~~~~ 376 (387)
-.+.+.||..| .+...+.+.|.. ++...++..+||+|+.. .+|.|+..++..|+||++.+|+.+|+...
T Consensus 478 k~~~~~s~l~p--~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~ 552 (684)
T KOG4362|consen 478 KLVLLVSGLTP--SEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLR 552 (684)
T ss_pred ceeeeeccCCc--chHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhc
Confidence 45567788887 546778888877 78888999999999984 47999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 036523 377 SRQAENDYFP 386 (387)
Q Consensus 377 ~r~dE~~Y~~ 386 (387)
+.++|++|+.
T Consensus 553 ~~~~eepfEl 562 (684)
T KOG4362|consen 553 KWVSEEPFEL 562 (684)
T ss_pred CCCCCCCeeE
Confidence 9999999975
No 52
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.57 E-value=2.1e-05 Score=73.55 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=74.5
Q ss_pred EEeeCccHHHHHHHHhhc-ccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCC------CCceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEACKM-YDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFK------DTGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~~-yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~------~~~~KdL~~l~~~~~ 206 (387)
-++..||+.+||+.+... .-+.+-|++.+.-+..+++.+.-.. || .. ++++++.. ..|.+-.++|+-+++
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f-~~-~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~ 160 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YF-DV-IVTADDVARGKPAPDIYLLAAERLGVDPE 160 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hc-ch-hccHHHHhcCCCCCHHHHHHHHHcCCChH
Confidence 368999999999999966 9999999999999999999998876 78 44 44455543 246777888888999
Q ss_pred CeEEEeCChhhhhcCCCCeeEeccc
Q 036523 207 GVVIVDDTAEVWKDHKENLILVGKY 231 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I~~y 231 (387)
.+|+|+|++.--.....-|..+--+
T Consensus 161 ~CvviEDs~~Gi~Aa~aAGm~vv~v 185 (221)
T COG0637 161 ECVVVEDSPAGIQAAKAAGMRVVGV 185 (221)
T ss_pred HeEEEecchhHHHHHHHCCCEEEEe
Confidence 9999999997665444445554333
No 53
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.57 E-value=0.00013 Score=65.48 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=56.4
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcH---------------HHHHHHHHHcCCCCceeecccEEec-----------
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNR---------------HYAEMIAKLLDPKCEYYISSRLITC----------- 187 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~---------------~YA~~i~~~LDP~~~~F~~~Ri~sr----------- 187 (387)
+.+-||+.++|+.|. +.|.++|.||+.. .|...++..+... | ..++..
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~i~~~~~~~~~~~~~~ 99 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---L--DGIYYCPHHPEGVEEFR 99 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---c--cEEEECCCCCccccccc
Confidence 457799999999998 6699999999985 4555555544322 3 222221
Q ss_pred cCCC------CCceeccccccCCCCCeEEEeCChhhhhcCCCCeeE
Q 036523 188 EDFK------DTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 188 d~~~------~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~ 227 (387)
+++. ..+.+-+++++-+++.+++|+|++.-......+|+.
T Consensus 100 ~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~ 145 (176)
T TIGR00213 100 QVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVK 145 (176)
T ss_pred CCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCc
Confidence 1221 123344566666789999999998655444456654
No 54
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.53 E-value=0.00012 Score=67.68 Aligned_cols=93 Identities=17% Similarity=0.059 Sum_probs=63.0
Q ss_pred EEeeCccHHHHHHHHhh-cccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEecc----------CCCC-----Cceec
Q 036523 134 LVKLRPYIRSFLKEACK-MYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCE----------DFKD-----TGKKN 197 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~-~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd----------~~~~-----~~~Kd 197 (387)
.++++||+.+||+.+.+ .+.++|.|+|.+.++..+++.++-.. +| +..+.+-+ .+.. .+.+-
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AF-ANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eE-eeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 35789999999999985 79999999999999999999987665 67 54433211 0100 01122
Q ss_pred cccccCCCCCeEEEeCChhhhhcCCCCeeEe
Q 036523 198 LDLVLGQERGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 198 L~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
+++++.+.+.++.|+|+..-.......|+.|
T Consensus 161 ~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i 191 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGANDLSMIKAAGLGI 191 (219)
T ss_pred HHHcCCCHHHEEEEECCHHHHHHHHhCCCeE
Confidence 2334446778999999976554433445554
No 55
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.49 E-value=0.00015 Score=79.97 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=66.6
Q ss_pred eeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC-CCchHHHHHHhCCCeeeCHHHHHHHHHhcccCCCC
Q 036523 304 CTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR-QATEGRRLAEQHNNFLVHPRWIYAAYYLWSRQAEN 382 (387)
Q Consensus 304 ~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~-~~t~K~~~A~~~gi~IV~~~Wl~~c~~~~~r~dE~ 382 (387)
..+.|++... ...+.+.++.+|+.++.. ..+.||+|+.+ ..|.|...|...|++||+++||.+|.+....+||+
T Consensus 660 ~~~lfs~~~~----~~~~k~~~k~lg~s~~ss-~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek 734 (896)
T KOG2043|consen 660 IEVLFSDKND----GKNYKLAKKFLGGSVASS-DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEK 734 (896)
T ss_pred eeeeeeeccC----chhhhhHHhhccceeecc-cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCc
Confidence 4567777664 456788889999888755 45899999997 57999999999999999999999999999999999
Q ss_pred CCCC
Q 036523 383 DYFP 386 (387)
Q Consensus 383 ~Y~~ 386 (387)
+|..
T Consensus 735 ~yil 738 (896)
T KOG2043|consen 735 PYIL 738 (896)
T ss_pred cccc
Confidence 9963
No 56
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=97.47 E-value=9.8e-05 Score=75.28 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=67.7
Q ss_pred hhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeeccc----------CCCceEEEEcCCCchHHHHHHhCCCeeeCHH
Q 036523 298 RQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVH----------DSSVTHVVSTRQATEGRRLAEQHNNFLVHPR 367 (387)
Q Consensus 298 ~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v----------~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~ 367 (387)
+..|+|+++.++.-+| +..|.-++.++||.|+.+- +..+||=|+-.++-.- .-.|..-|.|+
T Consensus 325 kslF~glkFfl~reVP----resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~----~v~gR~YvQPQ 396 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP----RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQT----SVIGRTYVQPQ 396 (570)
T ss_pred HHHhhcceeeeeccCc----hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccc----eeeeeeeecch
Confidence 5789999999999999 7889999999999999872 3568999998765211 12467899999
Q ss_pred HHHHHHHhcccCCCCCCCC
Q 036523 368 WIYAAYYLWSRQAENDYFP 386 (387)
Q Consensus 368 Wl~~c~~~~~r~dE~~Y~~ 386 (387)
||.||+-+..++|-+.|.|
T Consensus 397 WvfDsvNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 397 WVFDSVNARLLLPTEKYFP 415 (570)
T ss_pred hhhhhccchhhccHhhhCC
Confidence 9999999999999998876
No 57
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.46 E-value=0.00061 Score=58.21 Aligned_cols=130 Identities=22% Similarity=0.212 Sum_probs=85.2
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHY 164 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~Y 164 (387)
.+|||+|+||-.-...+.+.|.-+ .+......| ....-|.++|++.+||+.+. ..|-+..+|=.-..-
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~---rVs~n~i~D--------s~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k 70 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFR---RVSSNTIED--------SKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK 70 (164)
T ss_pred cEEEeCCCcccccccchhcCCcce---ecCccceec--------CCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH
Confidence 579999999998765544433210 000011111 23457899999999999998 789999999999999
Q ss_pred HHHHHHHcCCCCceeecccEEeccCCCC---Cceecccccc------CCCCCeEEEeCChh----hhhcCCCCeeEeccc
Q 036523 165 AEMIAKLLDPKCEYYISSRLITCEDFKD---TGKKNLDLVL------GQERGVVIVDDTAE----VWKDHKENLILVGKY 231 (387)
Q Consensus 165 A~~i~~~LDP~~~~F~~~Ri~srd~~~~---~~~KdL~~l~------~~~~~vvIiDD~~~----~w~~~~~N~I~I~~y 231 (387)
|-++++.||-.. || ..-++ +..+- +..+=|..+. -.++++|.+|||.. .|. +-.|+=.++.|
T Consensus 71 A~~aLral~~~~-yF-hy~Vi--ePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V~~~~~~ 145 (164)
T COG4996 71 AIKALRALDLLQ-YF-HYIVI--EPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNVKCLEMW 145 (164)
T ss_pred HHHHHHHhchhh-hE-EEEEe--cCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCeeeeEee
Confidence 999999999997 89 44343 22220 0111222222 13789999999984 554 35565555555
No 58
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.45 E-value=0.0002 Score=63.92 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=57.4
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCC--------------------CCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDF--------------------KDT 193 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~--------------------~~~ 193 (387)
+.++||+.++|+.+. ..+.++|.|++.+.++..+++.++-.. +| +.+++.+.. ...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 147 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VF--IEIYSNPASFDNDGRHIVWPHHCHGCCSCPCG 147 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-he--eEEeccCceECCCCcEEEecCCCCccCcCCCC
Confidence 689999999999997 469999999999999999999887654 67 556643221 011
Q ss_pred cee--ccccccCC-CCCeEEEeCChhhh
Q 036523 194 GKK--NLDLVLGQ-ERGVVIVDDTAEVW 218 (387)
Q Consensus 194 ~~K--dL~~l~~~-~~~vvIiDD~~~~w 218 (387)
..| -++.+... .+.+|.|+|+..-.
T Consensus 148 ~~K~~~~~~~~~~~~~~~i~iGD~~~D~ 175 (188)
T TIGR01489 148 CCKGKVIHKLSEPKYQHIIYIGDGVTDV 175 (188)
T ss_pred CCHHHHHHHHHhhcCceEEEECCCcchh
Confidence 123 23333333 67899999987544
No 59
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.40 E-value=0.0003 Score=66.72 Aligned_cols=140 Identities=10% Similarity=0.020 Sum_probs=79.8
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCC-CC--CCceeeecCceEEEeeCccHHHHHHHH-hhcccE
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSA-SD--GGGLFMMDGGLLLVKLRPYIRSFLKEA-CKMYDI 154 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~-~d--~~~~f~l~~~~~~v~lRPgl~eFL~~l-s~~yel 154 (387)
+-.++++.+++|+|+|+++++...-. +. ..+....... ++ ....+. .....+..+.||+.+||+.+ .+.++|
T Consensus 58 ~~~~~p~av~~DIDeTvldnsp~~~~-~~--~~f~~~~~~y~~~~~fw~~y~-~~~~~~a~p~~Ga~elL~~L~~~G~~I 133 (237)
T PRK11009 58 LEGRPPMAVGFDIDDTVLFSSPGFWR-GK--KTFSPGSEDYLKNQKFWEKMN-NGWDEFSIPKEVARQLIDMHVKRGDSI 133 (237)
T ss_pred ccCCCCcEEEEECcCccccCCchhee-ee--eccCCCcccccChHHHHHHHH-hcccccCcchHHHHHHHHHHHHCCCeE
Confidence 44556779999999999997642111 11 1111000000 00 000000 11234567778899999999 588999
Q ss_pred EEEcC----CcHHHHHHHHHHcCC-CCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCChhhhhcCCCCeeE
Q 036523 155 YICTM----GNRHYAEMIAKLLDP-KCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 155 ~IyT~----g~~~YA~~i~~~LDP-~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~ 227 (387)
++-|+ ....+++.+++.++- ...+| .-+++.++... ..|. ..+ .....+|+|.|+..=.......|+.
T Consensus 134 ~iVTnR~~~k~~~t~~~Llk~~gip~~~~f--~vil~gd~~~K-~~K~-~~l-~~~~i~I~IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 134 YFITGRTATKTETVSKTLADDFHIPADNMN--PVIFAGDKPGQ-YTKT-QWL-KKKNIRIFYGDSDNDITAAREAGAR 206 (237)
T ss_pred EEEeCCCCcccHHHHHHHHHHcCCCcccce--eEEEcCCCCCC-CCHH-HHH-HhcCCeEEEcCCHHHHHHHHHcCCc
Confidence 99999 457799999987765 23367 55665554211 1111 111 1344589999997655444455554
No 60
>PRK08238 hypothetical protein; Validated
Probab=97.35 E-value=0.00061 Score=70.96 Aligned_cols=89 Identities=17% Similarity=0.306 Sum_probs=62.6
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCC--ceeccccccC--CCCCeE
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDT--GKKNLDLVLG--QERGVV 209 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~--~~KdL~~l~~--~~~~vv 209 (387)
...+|++.++|+++. +.+.++|-|++.+.+++++++.++- | +.+++.++.... ..| ...+.. +.+.++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F--d~Vigsd~~~~~kg~~K-~~~l~~~l~~~~~~ 143 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F--DGVFASDGTTNLKGAAK-AAALVEAFGERGFD 143 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C--CEEEeCCCccccCCchH-HHHHHHHhCccCee
Confidence 357899999999996 7799999999999999999999853 7 667766553321 112 111111 235577
Q ss_pred EEeCCh---hhhhcCCCCeeEeccc
Q 036523 210 IVDDTA---EVWKDHKENLILVGKY 231 (387)
Q Consensus 210 IiDD~~---~~w~~~~~N~I~I~~y 231 (387)
.+.|+. .+|. .-+|.+.|.|=
T Consensus 144 yvGDS~~Dlp~~~-~A~~av~Vn~~ 167 (479)
T PRK08238 144 YAGNSAADLPVWA-AARRAIVVGAS 167 (479)
T ss_pred EecCCHHHHHHHH-hCCCeEEECCC
Confidence 888888 4676 35688887654
No 61
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.34 E-value=0.00012 Score=63.77 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=71.0
Q ss_pred EEEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCC
Q 036523 133 LLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQE 205 (387)
Q Consensus 133 ~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~ 205 (387)
....+.||+.++|+.++ +.+.++|.|++.+.++..+++.+... .+| +.+++.++.+. .+.+-++.++.++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f--~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p 150 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYF--DEIISSDDVGSRKPDPDAYRRALEKLGIPP 150 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGC--SEEEEGGGSSSSTTSHHHHHHHHHHHTSSG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccc--ccccccchhhhhhhHHHHHHHHHHHcCCCc
Confidence 46789999999999999 89999999999999999999999777 478 67887776552 1334455566678
Q ss_pred CCeEEEeCChhhhhcCCCCee
Q 036523 206 RGVVIVDDTAEVWKDHKENLI 226 (387)
Q Consensus 206 ~~vvIiDD~~~~w~~~~~N~I 226 (387)
+.+|+|||++.-.......|+
T Consensus 151 ~~~~~vgD~~~d~~~A~~~G~ 171 (176)
T PF13419_consen 151 EEILFVGDSPSDVEAAKEAGI 171 (176)
T ss_dssp GGEEEEESSHHHHHHHHHTTS
T ss_pred ceEEEEeCCHHHHHHHHHcCC
Confidence 999999999965543333333
No 62
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.29 E-value=0.00047 Score=64.05 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=59.5
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccE-EeccC----------------CCCCce
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRL-ITCED----------------FKDTGK 195 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri-~srd~----------------~~~~~~ 195 (387)
.+.++||+.+||+.+. +.+.++|.|+|.+.|+.++++.+-+...+| .... ++.+. |+....
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~-~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~ 150 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIY-CNGSDFSGEYITITWPHPCDEHCQNHCGCCKP 150 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEE-EeEEEecCCeeEEeccCCccccccccCCCchH
Confidence 3689999999999997 679999999999999999998761112233 2221 11111 111112
Q ss_pred eccccccCCCCCeEEEeCChhhhhcCCCCeeEe
Q 036523 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 196 KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
+-++.+..+...+|.|.|+..=.......++.+
T Consensus 151 ~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~ 183 (219)
T PRK09552 151 SLIRKLSDTNDFHIVIGDSITDLEAAKQADKVF 183 (219)
T ss_pred HHHHHhccCCCCEEEEeCCHHHHHHHHHCCcce
Confidence 233444445678999999986444333445533
No 63
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.18 E-value=0.00028 Score=65.10 Aligned_cols=91 Identities=20% Similarity=0.102 Sum_probs=69.3
Q ss_pred EEeeCccHHHHHHHHhh-cccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEACK-MYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~-~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
++.+.||+.+||+.+.+ .+.+.|.|++.+.++...++.++-.. || +.+++.++.+. .+.+-+++++-+.+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 168 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FF--DAVITSEEEGVEKPHPKIFYAALKRLGVKPE 168 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hc--cEEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence 46899999999999985 59999999999999999999998765 78 66777766542 23455666666788
Q ss_pred CeEEEeCCh-hhhhcCCCCeeE
Q 036523 207 GVVIVDDTA-EVWKDHKENLIL 227 (387)
Q Consensus 207 ~vvIiDD~~-~~w~~~~~N~I~ 227 (387)
.+|.|+|++ .-.......|+.
T Consensus 169 ~~~~igDs~~~di~~A~~aG~~ 190 (221)
T TIGR02253 169 EAVMVGDRLDKDIKGAKNLGMK 190 (221)
T ss_pred hEEEECCChHHHHHHHHHCCCE
Confidence 999999997 333333344554
No 64
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.15 E-value=0.00047 Score=62.02 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=64.5
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEc-CCc
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICT-MGN 161 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT-~g~ 161 (387)
...+|+|||.||-.-.......|.- ...... .--.+....-+++-|++.+.|+++. ....|.+-| +..
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf----~~~~~~------~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~ 72 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPF----KKISNG------NVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDE 72 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-E----EE-TTS--------EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-
T ss_pred CcEEEEcCcCCCCchhHhhccCCCc----eecCCC------CEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCC
Confidence 3478999999998776443322211 100000 0011234556889999999999998 689999999 567
Q ss_pred HHHHHHHHHHcCCC---------CceeecccEEeccCCCCCceecccc-ccCCCCCeEEEeCChhhh
Q 036523 162 RHYAEMIAKLLDPK---------CEYYISSRLITCEDFKDTGKKNLDL-VLGQERGVVIVDDTAEVW 218 (387)
Q Consensus 162 ~~YA~~i~~~LDP~---------~~~F~~~Ri~srd~~~~~~~KdL~~-l~~~~~~vvIiDD~~~~w 218 (387)
++.|.++++.|+.. ..+| ..-=+... +...+.+.|.+ .+-+.+.++++||.....
T Consensus 73 P~~A~~~L~~l~i~~~~~~~~~~~~~F-~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 73 PDWARELLKLLEIDDADGDGVPLIEYF-DYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHHHHHHHHHTT-C----------CCE-CEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred hHHHHHHHHhcCCCccccccccchhhc-chhheecC-chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 99999999999877 1256 33222222 22223333332 233678899999998654
No 65
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.12 E-value=0.00026 Score=65.45 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=63.4
Q ss_pred EeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCC--------C----Cceecccccc
Q 036523 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFK--------D----TGKKNLDLVL 202 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~--------~----~~~KdL~~l~ 202 (387)
+|.-|-|++||-.|.+.+ .++||||.+..|..+++.|.-.. .| ..|++.+-.. . .+.|-.+..+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cF--egii~~e~~np~~~~~vcKP~~~afE~a~k~ag 174 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CF--EGIICFETLNPIEKTVVCKPSEEAFEKAMKVAG 174 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hc--cceeEeeccCCCCCceeecCCHHHHHHHHHHhC
Confidence 788888999999999887 99999999999999999999877 58 6666554322 1 1223333334
Q ss_pred C-CCCCeEEEeCChhhhhcCC
Q 036523 203 G-QERGVVIVDDTAEVWKDHK 222 (387)
Q Consensus 203 ~-~~~~vvIiDD~~~~w~~~~ 222 (387)
- ++++++++||+........
T Consensus 175 i~~p~~t~FfDDS~~NI~~ak 195 (244)
T KOG3109|consen 175 IDSPRNTYFFDDSERNIQTAK 195 (244)
T ss_pred CCCcCceEEEcCchhhHHHHH
Confidence 3 4899999999987765433
No 66
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.07 E-value=0.00045 Score=65.55 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=73.8
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
.+.+.||+.++|+.+. +.+.+.|-|++.+.++..+++.++-.. || +.+++.++... .+.+-+++++.+++
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F--d~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~ 182 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FF--QAVIIGSECEHAKPHPDPYLKALEVLKVSKD 182 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hC--cEEEecCcCCCCCCChHHHHHHHHHhCCChh
Confidence 4678899999999996 679999999999999999999998765 89 77777777542 23455666676789
Q ss_pred CeEEEeCChhhhhcCCCCeeEec
Q 036523 207 GVVIVDDTAEVWKDHKENLILVG 229 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I~ 229 (387)
.+++|+|++.-......+|+.+-
T Consensus 183 ~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 183 HTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred HEEEEcCCHHHHHHHHHCCCEEE
Confidence 99999999965554456677653
No 67
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.05 E-value=0.00067 Score=62.07 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=73.5
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
.+.+.||+.++|+.+. +.+.++|.|++.+.++..+++.++-.+ +| ..+++.++... .+.+-++.++..++
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 159 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YF--SVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ 159 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hC--cEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence 4689999999999997 569999999999999999999988765 78 66777665431 13344566666788
Q ss_pred CeEEEeCChhhhhcCCCCeeEeccc
Q 036523 207 GVVIVDDTAEVWKDHKENLILVGKY 231 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I~~y 231 (387)
.+++|+|++.-.......|+++-..
T Consensus 160 ~~~~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 160 QMVYVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred HeEEeCCCHHHHHHHHHCCCeEEEE
Confidence 8999999987665555667765444
No 68
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.03 E-value=0.00058 Score=62.46 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=71.9
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
.+.+.||+.++|+.+. +.+.++|.|++.+.++..+++.++-.+ +| +.+++.++... .+.+-+++++-+.+
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 149 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LF--DHVIGSDEVPRPKPAPDIVREALRLLDVPPE 149 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-he--eeEEecCcCCCCCCChHHHHHHHHHcCCChh
Confidence 4678999999999997 679999999999999999999998876 78 67777766531 12233445555788
Q ss_pred CeEEEeCChhhhhcCCCCeeEec
Q 036523 207 GVVIVDDTAEVWKDHKENLILVG 229 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I~ 229 (387)
.+++|+|++.-......+|+++.
T Consensus 150 ~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 150 DAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred heEEEcCCHHHHHHHHHcCCeEE
Confidence 99999999865655556777643
No 69
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.03 E-value=0.00042 Score=64.55 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=65.3
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC--C----ceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD--T----GKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~--~----~~KdL~~l~~~~~~ 207 (387)
..+-||+.+.|+.++ +.|.+.|.|+..+..++.+++.++-.. || .-+++-++... . ...-+..++.+++.
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F--~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~ 164 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YF--DVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEE 164 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-cc--ceEEcCCCCCCCCcCHHHHHHHHHHhCCChhh
Confidence 578899999999998 778999999999999999999998876 78 65665333321 1 11233444545568
Q ss_pred eEEEeCChhhhhcCCCCeeE
Q 036523 208 VVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~ 227 (387)
+|+|-|+..=....+..|++
T Consensus 165 ~l~VGDs~~Di~aA~~Ag~~ 184 (220)
T COG0546 165 ALMVGDSLNDILAAKAAGVP 184 (220)
T ss_pred eEEECCCHHHHHHHHHcCCC
Confidence 99999998655444445544
No 70
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.99 E-value=0.0024 Score=61.55 Aligned_cols=117 Identities=21% Similarity=0.129 Sum_probs=69.2
Q ss_pred cCCceEEEEeCCCceeeeecCC--------CCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hc
Q 036523 81 GQRKLQLVLDLDHTLLHATDLD--------MLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KM 151 (387)
Q Consensus 81 ~~~kl~LVLDLD~TLihs~~~~--------~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~ 151 (387)
+.+++.+|||+|||+++.+... ..+++ ....+.. .--...-||+.+||+.+. +.
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~---~w~~wv~--------------~~~a~~ipGA~e~L~~L~~~G 134 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPE---TWDKWVQ--------------AAQAKPVAGALDFLNYANSKG 134 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHH---HHHHHHH--------------cCCCCcCccHHHHHHHHHHCC
Confidence 5678999999999999876320 01110 0000000 012346799999999996 67
Q ss_pred ccEEEEcCCcHHHHHHHHHHcCCCCc--eeecccEEeccCCCCCceecccc--ccCCCCCeEEEeCChhhh
Q 036523 152 YDIYICTMGNRHYAEMIAKLLDPKCE--YYISSRLITCEDFKDTGKKNLDL--VLGQERGVVIVDDTAEVW 218 (387)
Q Consensus 152 yel~IyT~g~~~YA~~i~~~LDP~~~--~F~~~Ri~srd~~~~~~~KdL~~--l~~~~~~vvIiDD~~~~w 218 (387)
..++|.|+....+.....+.|...|- ++ .+.|+.|++.. -|..++ +-..-+-++.|.|+..=+
T Consensus 135 ~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~-~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~Df 201 (266)
T TIGR01533 135 VKIFYVSNRSEKEKAATLKNLKRFGFPQAD-EEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLLDF 201 (266)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHcCcCCCC-cceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHHHh
Confidence 89999999886666654444433331 23 36777776422 243222 212334478888886444
No 71
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.98 E-value=0.00053 Score=62.31 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=68.1
Q ss_pred EeeCccHHHHHHHHhh-cccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEACK-MYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~-~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
+.+.||+.++|+.+.+ .|.++|.|++...++..+++.++-.. +| +.+++.++.+. .+.+-+++++-+++.
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PF--DAVLSADAVRAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hh--heeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence 5678999999999996 59999999999999999999987544 78 67887776542 123344555667899
Q ss_pred eEEEeCChhhhhcCCCCeeE
Q 036523 208 VVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~ 227 (387)
+++|+|++.-......+|+.
T Consensus 168 ~~~vgD~~~Di~~A~~~G~~ 187 (198)
T TIGR01428 168 VLFVASNPWDLGGAKKFGFK 187 (198)
T ss_pred EEEEeCCHHHHHHHHHCCCc
Confidence 99999998544433445554
No 72
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.98 E-value=0.0007 Score=60.07 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=63.1
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
+.+.||+.+||+.+. ..+.++|.|++...+ ..+...++..+ +| +.+++.++... .+.+-+++++.+++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 159 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LF--DVVIFSGDVGRGKPDPDIYLLALKKLGLKPEE 159 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HC--CEEEEcCCCCCCCCCHHHHHHHHHHcCCCcce
Confidence 688999999999998 579999999999999 66666577665 68 66665555431 123344555567899
Q ss_pred eEEEeCChhhhhcCCCCee
Q 036523 208 VVIVDDTAEVWKDHKENLI 226 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I 226 (387)
+|+|||++.-.......|+
T Consensus 160 ~~~vgD~~~di~aA~~~G~ 178 (183)
T TIGR01509 160 CLFVDDSPAGIEAAKAAGM 178 (183)
T ss_pred EEEEcCCHHHHHHHHHcCC
Confidence 9999999864433334444
No 73
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.98 E-value=0.00063 Score=62.59 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=70.5
Q ss_pred EEeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------Cceeccccc-cCCCC
Q 036523 134 LVKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLV-LGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l-~~~~~ 206 (387)
.++++||+.++|+.+.+.+.++|-|++.+.++..+++.++-.+ +| +.+++.++.+. .+.+-++++ +-.++
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~f--d~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 171 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FF--DDIFVSEDAGIQKPDKEIFNYALERMPKFSKE 171 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hc--CEEEEcCccCCCCCCHHHHHHHHHHhcCCCch
Confidence 3689999999999999669999999999999999999987765 78 77887666542 234556777 66788
Q ss_pred CeEEEeCCh-hhhhcCCCCeeEe
Q 036523 207 GVVIVDDTA-EVWKDHKENLILV 228 (387)
Q Consensus 207 ~vvIiDD~~-~~w~~~~~N~I~I 228 (387)
.+|+|+|++ .-......+|++.
T Consensus 172 ~~v~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 172 EVLMIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred heEEECCCcHHHHHHHHHCCCcE
Confidence 999999986 2333334566543
No 74
>PRK06769 hypothetical protein; Validated
Probab=96.94 E-value=0.0012 Score=59.33 Aligned_cols=88 Identities=8% Similarity=-0.065 Sum_probs=53.6
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHH--------HHHHHHHcCCCCceeecccEEecc----CCC------CCce
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHY--------AEMIAKLLDPKCEYYISSRLITCE----DFK------DTGK 195 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~Y--------A~~i~~~LDP~~~~F~~~Ri~srd----~~~------~~~~ 195 (387)
+.+-||+.++|++|. +.|.+.|.|++.... +...++.+ | | .+.+++-. +.. ..+.
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~---g--~-~~~~~~~~~~~~~~~~~KP~p~~~~ 100 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGF---G--F-DDIYLCPHKHGDGCECRKPSTGMLL 100 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhC---C--c-CEEEECcCCCCCCCCCCCCCHHHHH
Confidence 356799999999997 579999999987521 22223333 2 2 12223222 111 1234
Q ss_pred eccccccCCCCCeEEEeCChhhhhcCCCCeeEe
Q 036523 196 KNLDLVLGQERGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 196 KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
+-+++++-+++.+++|+|++.-.......|+..
T Consensus 101 ~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~ 133 (173)
T PRK06769 101 QAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATT 133 (173)
T ss_pred HHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeE
Confidence 556666667899999999985444334455543
No 75
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=96.82 E-value=0.0011 Score=71.74 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=62.7
Q ss_pred hhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeeccc-CCCce-------------------------EEEEc-CCCc
Q 036523 298 RQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVH-DSSVT-------------------------HVVST-RQAT 350 (387)
Q Consensus 298 ~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v-~~~vT-------------------------HlVa~-~~~t 350 (387)
+.||.||+++|++.+- . +.....-.+..||.+.... ..-.+ -||+- ..+|
T Consensus 923 kniFd~cvF~lTsa~~--s-d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt 999 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANR--S-DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRT 999 (1176)
T ss_pred cchhcceeEEEecccc--c-hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHH
Confidence 4899999999999775 3 4455555566777764421 11011 22222 1478
Q ss_pred hHHHHHHhCCCeeeCHHHHHHHHHhcccCCCCCCC
Q 036523 351 EGRRLAEQHNNFLVHPRWIYAAYYLWSRQAENDYF 385 (387)
Q Consensus 351 ~K~~~A~~~gi~IV~~~Wl~~c~~~~~r~dE~~Y~ 385 (387)
.||..|.+.||+.||+.||.+|..+.+.+|-.+|+
T Consensus 1000 ~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YL 1034 (1176)
T KOG3548|consen 1000 HKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYL 1034 (1176)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHhccccccchhhc
Confidence 89999999999999999999999999999988875
No 76
>PRK09449 dUMP phosphatase; Provisional
Probab=96.80 E-value=0.00098 Score=61.70 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=68.0
Q ss_pred EeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccC-CCCC
Q 036523 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLG-QERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~-~~~~ 207 (387)
+.+.||+.++|+.+.+.|.+.|.|++.+.++..+++.++..+ +| +.+++.++... .+.+-+++++. +.+.
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~f--d~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 170 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YF--DLLVISEQVGVAKPDVAIFDYALEQMGNPDRSR 170 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-Hc--CEEEEECccCCCCCCHHHHHHHHHHcCCCCccc
Confidence 578999999999999889999999999999999999987765 78 77777766532 23445666664 4578
Q ss_pred eEEEeCChh-hhhcCCCCeeE
Q 036523 208 VVIVDDTAE-VWKDHKENLIL 227 (387)
Q Consensus 208 vvIiDD~~~-~w~~~~~N~I~ 227 (387)
+++|+|++. -.......|+.
T Consensus 171 ~~~vgD~~~~Di~~A~~aG~~ 191 (224)
T PRK09449 171 VLMVGDNLHSDILGGINAGID 191 (224)
T ss_pred EEEEcCCcHHHHHHHHHCCCc
Confidence 999999962 33333455654
No 77
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0013 Score=65.33 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=69.0
Q ss_pred chhhhHHHH---hhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeec-----------ccCCCceEEEEcCCCchHH
Q 036523 288 DVRSFLAKI---RRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTD-----------VHDSSVTHVVSTRQATEGR 353 (387)
Q Consensus 288 DVr~il~~~---R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~-----------~v~~~vTHlVa~~~~t~K~ 353 (387)
|+......+ -..+|+|.++.+|.-+| ...|.-++.++||.|.. +++..|||-|+-++--
T Consensus 335 d~~~~vsk~~Ss~~slFS~f~FyisreVp----~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~--- 407 (591)
T COG5163 335 DIMEMVSKPCSSLKSLFSGFKFYISREVP----GDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVM--- 407 (591)
T ss_pred hhhhhccCcCcchhhhhhceEEEEecccc----chHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhh---
Confidence 544444332 25689999999999998 56788889999999854 4567899999976421
Q ss_pred HHHHhCCCeeeCHHHHHHHHHhcccCCCCCCCC
Q 036523 354 RLAEQHNNFLVHPRWIYAAYYLWSRQAENDYFP 386 (387)
Q Consensus 354 ~~A~~~gi~IV~~~Wl~~c~~~~~r~dE~~Y~~ 386 (387)
.-+-.|.-.|.|+||.||+-.+.+.+-+.|.+
T Consensus 408 -~~kvegrtYiQPQw~fDsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 408 -KNKVEGRTYIQPQWLFDSINKGKLACVENYCV 439 (591)
T ss_pred -hhhhcceeeechHHHHhhhccccchhhhhccc
Confidence 11124788999999999999999998888864
No 78
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.74 E-value=0.0018 Score=58.06 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=70.7
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh-cccEEEE
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK-MYDIYIC 157 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~-~yel~Iy 157 (387)
+....-..+|+|+|+||..... ..+-||+.++|+.+.+ .+.++|.
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~~~----------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~ 65 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYPDH----------------------------------NEAYPALRDWIEELKAAGRKLLIV 65 (170)
T ss_pred HHHCCCCEEEEecCCccccCCC----------------------------------CCcChhHHHHHHHHHHcCCEEEEE
Confidence 3445556899999999986531 1245999999999984 5999999
Q ss_pred cCCc-HHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCCh--hhhhcCCCCeeE
Q 036523 158 TMGN-RHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDTA--EVWKDHKENLIL 227 (387)
Q Consensus 158 T~g~-~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~~--~~w~~~~~N~I~ 227 (387)
|++. ...+..+++.++..- ++ +. .......+.+-++.++.+.+.+++|+|+. ++-.. ..+|+.
T Consensus 66 Sn~~~~~~~~~~~~~~gl~~-~~-~~----~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA-~~aGi~ 131 (170)
T TIGR01668 66 SNNAGEQRAKAVEKALGIPV-LP-HA----VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG-NRNGSY 131 (170)
T ss_pred eCCchHHHHHHHHHHcCCEE-Ec-CC----CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH-HHcCCe
Confidence 9999 788888877765321 12 10 01111123344555555678999999996 55543 345554
No 79
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.74 E-value=0.0012 Score=61.87 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=70.1
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
+.+.||+.++|+.+. +.+.+.|-|++.+.++...++.++-.. +| +.+++.++... .+.+-+++++-+++.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f--d~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HL--DLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HC--CEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 678999999999998 579999999999999999999877654 78 55666555432 134445666667899
Q ss_pred eEEEeCChhhhhcCCCCeeE
Q 036523 208 VVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~ 227 (387)
+|+|+|++.-......+|+.
T Consensus 169 ~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCe
Confidence 99999999766555667775
No 80
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.66 E-value=0.0012 Score=61.23 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=71.8
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
..+.||+.++|+.+. +.+.++|.|++.+.++..+++.++-.+ +| +.+++.++... .+..-+++++.+++.
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 167 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YF--DALASAEKLPYSKPHPEVYLNCAAKLGVDPLT 167 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cc--cEEEEcccCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 578899999999997 679999999999999999999988766 78 67877766432 233445556667889
Q ss_pred eEEEeCChhhhhcCCCCeeEe
Q 036523 208 VVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~I 228 (387)
++.|+|++.-.......|++.
T Consensus 168 ~~~igDs~~Di~aA~~aG~~~ 188 (222)
T PRK10826 168 CVALEDSFNGMIAAKAARMRS 188 (222)
T ss_pred eEEEcCChhhHHHHHHcCCEE
Confidence 999999998776555666654
No 81
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.65 E-value=0.00083 Score=62.12 Aligned_cols=92 Identities=10% Similarity=0.030 Sum_probs=70.6
Q ss_pred EEeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 134 LVKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
.+.+.||+.++|+.+. +.+.|.|++.+.+++.+++..+-.. +| ...+++.++... .+.+-+++++..++.
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F-~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 161 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YF-PDKLFSGYDIQRWKPDPALMFHAAEAMNVNVEN 161 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hC-cceEeeHHhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 4678899999999994 8999999999999999999887765 68 556777655431 233445566667789
Q ss_pred eEEEeCChhhhhcCCCCeeEec
Q 036523 208 VVIVDDTAEVWKDHKENLILVG 229 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~I~ 229 (387)
+|+|+|++.-.......|+.+.
T Consensus 162 ~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 162 CILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred eEEEeCcHhhHHHHHHCCCEEE
Confidence 9999999987765556777654
No 82
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.61 E-value=0.0019 Score=61.19 Aligned_cols=92 Identities=15% Similarity=0.030 Sum_probs=71.4
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccC-CCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLG-QER 206 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~-~~~ 206 (387)
+.+.||+.++|+.+. +.+.+.|-|++.+.+++.+++.++-.+ +| -+.|++.++... .+.+-+++++. +++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f-~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 175 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YR-PDYNVTTDDVPAGRPAPWMALKNAIELGVYDVA 175 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CC-CceEEccccCCCCCCCHHHHHHHHHHcCCCCch
Confidence 578899999999997 569999999999999999999988776 44 377888776532 23455666665 478
Q ss_pred CeEEEeCChhhhhcCCCCeeEe
Q 036523 207 GVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I 228 (387)
.+|+|.|++.-......+|+..
T Consensus 176 ~~l~IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 176 ACVKVGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred heEEECCcHHHHHHHHHCCCeE
Confidence 9999999986555555666654
No 83
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.60 E-value=0.0041 Score=65.44 Aligned_cols=107 Identities=20% Similarity=0.076 Sum_probs=69.1
Q ss_pred cCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcC
Q 036523 81 GQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTM 159 (387)
Q Consensus 81 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~ 159 (387)
..+..++.||+||||+.+......+.. ... |..+-||+.+.|+.+. ..|.|+|+||
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~---------------~~d--------~~~l~pgV~e~L~~L~~~Gy~IvIvTN 221 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPKG---------------PDD--------WQIIFPEIPEKLKELEADGFKICIFTN 221 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCCC---------------HHH--------eeecccCHHHHHHHHHHCCCEEEEEEC
Confidence 345679999999999976431111000 000 2224599999999998 6799999999
Q ss_pred CcH------------HHHHHHHHHcCCCCceeecccEEeccCCCC------Cceeccccc----cCCCCCeEEEeCCh
Q 036523 160 GNR------------HYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLV----LGQERGVVIVDDTA 215 (387)
Q Consensus 160 g~~------------~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l----~~~~~~vvIiDD~~ 215 (387)
... .++..+++.++- .| .-+++.+++.. ....-++.+ .-+++.+++|.|+.
T Consensus 222 Q~gI~~G~~~~~~~~~ki~~iL~~lgi---pf--dviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 222 QGGIARGKINADDFKAKIEAIVAKLGV---PF--QVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred CcccccCcccHHHHHHHHHHHHHHcCC---ce--EEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 776 568888888864 36 45665555431 111112222 23678999999997
No 84
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.57 E-value=0.0016 Score=58.42 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=68.6
Q ss_pred EeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCCe
Q 036523 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERGV 208 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~v 208 (387)
+.+-|++ +.|+.+.+.+.++|-|++.+.++..+++.++-.+ || +.|++.++... .+..-+++++.+++.+
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~f--d~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 162 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YF--DAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQC 162 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hc--eEEEehhhccCCCCChHHHHHHHHHcCCCHHHe
Confidence 4556764 8999998779999999999999999999998765 79 77888877642 1334455566567899
Q ss_pred EEEeCChhhhhcCCCCeeEe
Q 036523 209 VIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 209 vIiDD~~~~w~~~~~N~I~I 228 (387)
|+|+|++.-......+|+++
T Consensus 163 l~igDs~~di~aA~~aG~~~ 182 (188)
T PRK10725 163 VVFEDADFGIQAARAAGMDA 182 (188)
T ss_pred EEEeccHhhHHHHHHCCCEE
Confidence 99999987666555566654
No 85
>PLN02954 phosphoserine phosphatase
Probab=96.55 E-value=0.0022 Score=59.29 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=41.0
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCC-ceeecccEE
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKC-EYYISSRLI 185 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~-~~F~~~Ri~ 185 (387)
..++||+.++|+.+. +.+.++|-|++.+.+++.+++.++-.. .+| ...+.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~-~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIF-ANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEE-EeEEE
Confidence 568899999999997 568999999999999999999987542 366 54433
No 86
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.45 E-value=0.0059 Score=61.23 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=73.1
Q ss_pred CceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC-
Q 036523 83 RKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG- 160 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g- 160 (387)
+|.+|+||-|+||+..... .++. .....+.+.||+.++|+.+. +.|.++|.|++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~--------~y~~----------------~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~ 56 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT--------DFQV----------------DSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQD 56 (354)
T ss_pred CCcEEEEeCCCCccCCCCc--------cccc----------------cCcccceECcCHHHHHHHHHhCCCeEEEEECCc
Confidence 4668999999999997531 0110 01124689999999999998 56999999995
Q ss_pred --------------cHHHHHHHHHHcCCCCceeecccEEec----cCCCCC--c----eeccccccCCCCCeEEEeCChh
Q 036523 161 --------------NRHYAEMIAKLLDPKCEYYISSRLITC----EDFKDT--G----KKNLDLVLGQERGVVIVDDTAE 216 (387)
Q Consensus 161 --------------~~~YA~~i~~~LDP~~~~F~~~Ri~sr----d~~~~~--~----~KdL~~l~~~~~~vvIiDD~~~ 216 (387)
.+.++..+++.++- +| ..-+++. ++|... . ..-++.+.-+++.+++|.|+..
T Consensus 57 g~G~~~~~~~~l~~~~~~i~~iL~~~gl---~f-d~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~s 132 (354)
T PRK05446 57 GLGTDSFPQEDFDPPHNLMMQIFESQGI---KF-DEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRET 132 (354)
T ss_pred cccCccccHHHHhhHHHHHHHHHHHcCC---ce-eeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHH
Confidence 24556666665543 46 3333432 333211 1 1112223346789999999974
Q ss_pred hhhcCCCCee---Eecccc
Q 036523 217 VWKDHKENLI---LVGKYN 232 (387)
Q Consensus 217 ~w~~~~~N~I---~I~~y~ 232 (387)
=......+|+ .|.|..
T Consensus 133 Di~aAk~aGi~~I~v~~~~ 151 (354)
T PRK05446 133 DVQLAENMGIKGIRYARET 151 (354)
T ss_pred HHHHHHHCCCeEEEEECCC
Confidence 3322233444 465543
No 87
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.36 E-value=0.0033 Score=57.90 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=68.3
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCC------ceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDT------GKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~------~~KdL~~l~~~~~ 206 (387)
...++||+.+||+.+. ..+.++|.|++...++..+++.++-.. +| +.+++.++.... +.+-++++..+.+
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 167 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YF--SVVIGGDSLPNKKPDPAPLLLACEKLGLDPE 167 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Cc--cEEEcCCCCCCCCcChHHHHHHHHHcCCChh
Confidence 4679999999999998 579999999999999999999988765 68 667766554311 2234455556788
Q ss_pred CeEEEeCChhhhhcCCCCeeE
Q 036523 207 GVVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~ 227 (387)
.+++|+|++.-.......|++
T Consensus 168 ~~i~igD~~~Di~~a~~~g~~ 188 (226)
T PRK13222 168 EMLFVGDSRNDIQAARAAGCP 188 (226)
T ss_pred heEEECCCHHHHHHHHHCCCc
Confidence 999999998655544445553
No 88
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.36 E-value=0.0018 Score=59.14 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=69.5
Q ss_pred EEEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCC
Q 036523 133 LLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQE 205 (387)
Q Consensus 133 ~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~ 205 (387)
.+..+.||+.++|+.+. +.|.++|-|++.+..+..++.....-..+| +.+++.++.+. .+..-+++++.++
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~~~~p 158 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAA--DHIYLSQDLGMRKPEARIYQHVLQAEGFSA 158 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhc--CEEEEecccCCCCCCHHHHHHHHHHcCCCh
Confidence 34678999999999997 579999999999887765544321123468 67777666542 2445566777788
Q ss_pred CCeEEEeCChhhhhcCCCCeeEeccc
Q 036523 206 RGVVIVDDTAEVWKDHKENLILVGKY 231 (387)
Q Consensus 206 ~~vvIiDD~~~~w~~~~~N~I~I~~y 231 (387)
+.+++|||++.-.......|+...-+
T Consensus 159 ~~~l~vgD~~~di~aA~~aG~~~i~~ 184 (199)
T PRK09456 159 ADAVFFDDNADNIEAANALGITSILV 184 (199)
T ss_pred hHeEEeCCCHHHHHHHHHcCCEEEEe
Confidence 99999999987665555677765433
No 89
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.30 E-value=0.0088 Score=53.32 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=89.0
Q ss_pred HHHhhccchhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHH
Q 036523 69 TRLKRMNSEIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEA 148 (387)
Q Consensus 69 ~~~~~~~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~l 148 (387)
+.+..-+.+.|...+-..+++|||+|||-=.. + ..-|-+++.+.++
T Consensus 13 ~tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~-----~-----------------------------~~tpe~~~W~~e~ 58 (175)
T COG2179 13 ETVFDITPDILKAHGIKGVILDLDNTLVPWDN-----P-----------------------------DATPELRAWLAEL 58 (175)
T ss_pred hhHhhCCHHHHHHcCCcEEEEeccCceecccC-----C-----------------------------CCCHHHHHHHHHH
Confidence 34555566788899999999999999996542 1 0237888999999
Q ss_pred h-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCCh--hhhhcCCCC-
Q 036523 149 C-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDTA--EVWKDHKEN- 224 (387)
Q Consensus 149 s-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~~--~~w~~~~~N- 224 (387)
. +.-.++|.+|.++.-+..++..||-+. ++ + +..-.+..+.|.|..+.-+.+.|++|-|+- |+...+..+
T Consensus 59 k~~gi~v~vvSNn~e~RV~~~~~~l~v~f-i~---~--A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 59 KEAGIKVVVVSNNKESRVARAAEKLGVPF-IY---R--AKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HhcCCEEEEEeCCCHHHHHhhhhhcCCce-ee---c--ccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCc
Confidence 8 568999999999999999999998763 11 1 112222234566777777889999999997 577655332
Q ss_pred -eeEeccc
Q 036523 225 -LILVGKY 231 (387)
Q Consensus 225 -~I~I~~y 231 (387)
.|.|+|-
T Consensus 133 ~tIlV~Pl 140 (175)
T COG2179 133 RTILVEPL 140 (175)
T ss_pred EEEEEEEe
Confidence 4577776
No 90
>PRK11587 putative phosphatase; Provisional
Probab=96.28 E-value=0.0044 Score=57.34 Aligned_cols=91 Identities=16% Similarity=-0.025 Sum_probs=67.8
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
.+.+.||+.++|+.+. +.+.+.|-|++++.++..+++...- . +| ..+++.++... .+.+-+++++-.++
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~-~~--~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~ 156 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-P-AP--EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQ 156 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-C-Cc--cEEEEHHHhcCCCCCcHHHHHHHHHcCCCcc
Confidence 4678999999999997 6799999999999998888877664 2 45 45666665431 23455666676789
Q ss_pred CeEEEeCChhhhhcCCCCeeEe
Q 036523 207 GVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I 228 (387)
.+|+|+|++.-.......|+..
T Consensus 157 ~~l~igDs~~di~aA~~aG~~~ 178 (218)
T PRK11587 157 ECVVVEDAPAGVLSGLAAGCHV 178 (218)
T ss_pred cEEEEecchhhhHHHHHCCCEE
Confidence 9999999996555445566654
No 91
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.24 E-value=0.0052 Score=58.00 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=66.4
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEE
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYIC 157 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~Iy 157 (387)
++.+-+ .+++|+||||.+... .-||+.++|+++. +.+.++|.
T Consensus 4 ~~~~~~-~~~~D~dG~l~~~~~------------------------------------~~pga~e~L~~L~~~G~~~~iv 46 (242)
T TIGR01459 4 LINDYD-VFLLDLWGVIIDGNH------------------------------------TYPGAVQNLNKIIAQGKPVYFV 46 (242)
T ss_pred hhhcCC-EEEEecccccccCCc------------------------------------cCccHHHHHHHHHHCCCEEEEE
Confidence 444444 789999999987542 3499999999998 67999999
Q ss_pred cCCcHHHHH--HHHHHcCCCCceeecccEEeccCCCCCcee-ccccccCCCCCeEEEeCCh
Q 036523 158 TMGNRHYAE--MIAKLLDPKCEYYISSRLITCEDFKDTGKK-NLDLVLGQERGVVIVDDTA 215 (387)
Q Consensus 158 T~g~~~YA~--~i~~~LDP~~~~F~~~Ri~srd~~~~~~~K-dL~~l~~~~~~vvIiDD~~ 215 (387)
||+++..+. +.++.++....+| +.|++.++....+.. -++.++...+.+++|-|.+
T Consensus 47 TN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 47 SNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred eCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHHHHHhhhhhccCCCceEEEeCCcc
Confidence 999998877 6778887654257 667765543221221 1222233456677777765
No 92
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.23 E-value=0.0034 Score=57.91 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=69.5
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCC-CceeecccEEeccCCCC------CceeccccccCC-C
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPK-CEYYISSRLITCEDFKD------TGKKNLDLVLGQ-E 205 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~-~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~-~ 205 (387)
+.+.||+.+||+.+. +.+.+.|-|++.+.++..+++.++-. +.+| ..+++.++... .+.+-+++++.. +
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f--~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 163 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDV--DAVVCPSDVAAGRPAPDLILRAMELTGVQDV 163 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccC--CEEEcCCcCCCCCCCHHHHHHHHHHcCCCCh
Confidence 579999999999996 78999999999999999999998865 2588 67887766431 123445556554 6
Q ss_pred CCeEEEeCChhhhhcCCCCeeEe
Q 036523 206 RGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 206 ~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
+.+++|+|++.-.......|+.+
T Consensus 164 ~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 164 QSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred hHeEEeCCCHHHHHHHHHCCCCe
Confidence 89999999986554444455543
No 93
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.23 E-value=0.0022 Score=57.19 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=64.5
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
+.+.||+.++|+.+. ..+.++|-|++ .++..+++.++-.+ || +.+++.++... .+.+-+++++..++.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f--~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YF--DAIVDADEVKEGKPHPETFLLAAELLGVSPNE 161 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HC--CEeeehhhCCCCCCChHHHHHHHHHcCCCHHH
Confidence 679999999999997 56899999988 78999999877655 78 56666655431 123445555556789
Q ss_pred eEEEeCChhhhhcCCCCeeE
Q 036523 208 VVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~ 227 (387)
+|+|+|++.-......+|++
T Consensus 162 ~v~IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 162 CVVFEDALAGVQAARAAGMF 181 (185)
T ss_pred eEEEeCcHhhHHHHHHCCCe
Confidence 99999998655544455554
No 94
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.16 E-value=0.0043 Score=59.85 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=68.4
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCC------ceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDT------GKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~------~~KdL~~l~~~~~~ 207 (387)
+.++||+.++|+.+. +.+.++|.|++...++..+++.++-.+ +| +.+++.++.... +.+-+++++-+++.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f--~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~ 176 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YF--RWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQ 176 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hC--eEEEecCCCCCCCCCcHHHHHHHHHhCCChhH
Confidence 568999999999997 579999999999999999999887654 78 678877665421 12233444557899
Q ss_pred eEEEeCChhhhhcCCCCeeE
Q 036523 208 VVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~ 227 (387)
+++|+|++.-......+|+.
T Consensus 177 ~l~IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 177 SLFVGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred EEEECCCHHHHHHHHHCCCe
Confidence 99999998766554556664
No 95
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.12 E-value=0.0063 Score=56.07 Aligned_cols=82 Identities=24% Similarity=0.191 Sum_probs=66.2
Q ss_pred EEeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 134 LVKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
.+..-|++.++|+.+.+.|.++|.|||...++...++.+.- ..+| +.+++.++.+. .+..-++.++.+++.
T Consensus 97 ~~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl-~~~F--d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~ 173 (229)
T COG1011 97 LLPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGL-LDYF--DAVFISEDVGVAKPDPEIFEYALEKLGVPPEE 173 (229)
T ss_pred hCccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCC-hhhh--heEEEecccccCCCCcHHHHHHHHHcCCCcce
Confidence 37888999999999997799999999999999999999883 4589 66776666651 234456666667899
Q ss_pred eEEEeCChhhh
Q 036523 208 VVIVDDTAEVW 218 (387)
Q Consensus 208 vvIiDD~~~~w 218 (387)
+++|||+...-
T Consensus 174 ~l~VgD~~~~d 184 (229)
T COG1011 174 ALFVGDSLEND 184 (229)
T ss_pred EEEECCChhhh
Confidence 99999998654
No 96
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.03 E-value=0.0064 Score=53.53 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=56.6
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDD 213 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD 213 (387)
+.++|+. -|+++. +.+.++|.|+..+..+..+++.+.-.. +| ... ..-.....+-++.++-+.+.++.|.|
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~-~~~----~~k~~~~~~~~~~~~~~~~~~~~vGD 100 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LY-QGQ----SNKLIAFSDILEKLALAPENVAYIGD 100 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EE-ecc----cchHHHHHHHHHHcCCCHHHEEEECC
Confidence 4677776 688887 579999999999999999999988764 56 221 11011122223444446788999999
Q ss_pred ChhhhhcCCCCeeEe
Q 036523 214 TAEVWKDHKENLILV 228 (387)
Q Consensus 214 ~~~~w~~~~~N~I~I 228 (387)
+..=...-...++.+
T Consensus 101 s~~D~~~~~~ag~~~ 115 (154)
T TIGR01670 101 DLIDWPVMEKVGLSV 115 (154)
T ss_pred CHHHHHHHHHCCCeE
Confidence 986554434455543
No 97
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.97 E-value=0.008 Score=56.35 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=65.0
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcC---CCCceeecccEEeccCCC----CCceeccccccCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLD---PKCEYYISSRLITCEDFK----DTGKKNLDLVLGQE 205 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LD---P~~~~F~~~Ri~srd~~~----~~~~KdL~~l~~~~ 205 (387)
...+.||+.++|+.+. +.+.++|+|+++..+...+++..+ -.. || +.++....+. ..+.+-+++++-++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~-~f--~~~fd~~~g~KP~p~~y~~i~~~lgv~p 169 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTP-YF--SGYFDTTVGLKTEAQSYVKIAGQLGSPP 169 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhh-hc--ceEEEeCcccCCCHHHHHHHHHHhCcCh
Confidence 4568999999999997 689999999999999999887753 222 45 3333211111 23455566777778
Q ss_pred CCeEEEeCChhhhhcCCCCeeEe
Q 036523 206 RGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 206 ~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
+.+++|+|++.-.......|+..
T Consensus 170 ~e~lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 170 REILFLSDIINELDAARKAGLHT 192 (220)
T ss_pred hHEEEEeCCHHHHHHHHHcCCEE
Confidence 99999999987665545556643
No 98
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=95.87 E-value=0.0091 Score=57.12 Aligned_cols=92 Identities=16% Similarity=0.085 Sum_probs=69.5
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCC-CC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQ-ER 206 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~-~~ 206 (387)
+.+-||+.++|+.+. +.+.+.|-|++.+..+..+++.+.-.+ +| -+.|++.++... .+.+-+++++.. .+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~-~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 177 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YR-PDHVVTTDDVPAGRPYPWMALKNAIELGVYDVA 177 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CC-ceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCc
Confidence 578899999999997 679999999999999999999876655 43 367777776532 234455666654 58
Q ss_pred CeEEEeCChhhhhcCCCCeeEe
Q 036523 207 GVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I 228 (387)
.+|+|+|++.-.......|+..
T Consensus 178 e~l~IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 178 ACVKVDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred ceEEEcCcHHHHHHHHHCCCEE
Confidence 8999999997665555667654
No 99
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.83 E-value=0.007 Score=58.84 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=66.5
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecc-cEEeccCCCC------CceeccccccCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISS-RLITCEDFKD------TGKKNLDLVLGQER 206 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~-Ri~srd~~~~------~~~KdL~~l~~~~~ 206 (387)
+++.||+.++|+.+. +.+.++|.|++.+.++..+++.+.-.+ +| .. .+++.+++.. .+.+-++.++-+++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~-~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~ 220 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RA-QGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPS 220 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-cc-CceEEEeccccCCCCCCHHHHHHHHHHhCcChH
Confidence 578999999999997 579999999999999999998763222 34 21 2335555432 12334555666788
Q ss_pred CeEEEeCChhhhhcCCCCeeEec
Q 036523 207 GVVIVDDTAEVWKDHKENLILVG 229 (387)
Q Consensus 207 ~vvIiDD~~~~w~~~~~N~I~I~ 229 (387)
.+|+|+|++.-+.....+|+.+.
T Consensus 221 ~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 221 RCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred HEEEEeCCHHhHHHHHHcCCEEE
Confidence 99999999987766556676543
No 100
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.81 E-value=0.013 Score=53.24 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=60.3
Q ss_pred eeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC-----CceeccccccCCCCCeE
Q 036523 136 KLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD-----TGKKNLDLVLGQERGVV 209 (387)
Q Consensus 136 ~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~-----~~~KdL~~l~~~~~~vv 209 (387)
+..|+..++|+.+. +.+.+.|.|++.+.++..+++.++-.. || +.+++.++... .+.+-+++++.+.+.+|
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f--~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i 182 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LF--PVQIWMEDCPPKPNPEPLILAAKALGVEACHAA 182 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hC--CEEEeecCCCCCcCHHHHHHHHHHhCcCcccEE
Confidence 45566799999998 569999999999999999999998764 78 67777666432 12344555666788999
Q ss_pred EEeCChh
Q 036523 210 IVDDTAE 216 (387)
Q Consensus 210 IiDD~~~ 216 (387)
+|+|++.
T Consensus 183 ~vGD~~~ 189 (197)
T TIGR01548 183 MVGDTVD 189 (197)
T ss_pred EEeCCHH
Confidence 9999974
No 101
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.79 E-value=0.0051 Score=54.81 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=63.0
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
..+.||+.++|+.+. ..+.+.|-|++. .+..+++.++-.. +| +.+++.++... .+.+-+++++-+++.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~ 160 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YF--DAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSE 160 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hC--cEEEehhhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 467899999999997 669999999875 3567888887664 78 66776655321 234455566667789
Q ss_pred eEEEeCChhhhhcCCCCeeE
Q 036523 208 VVIVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~ 227 (387)
+|+|+|++.-......+|++
T Consensus 161 ~v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 161 CIGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred eEEEecCHHHHHHHHHcCCE
Confidence 99999998655444455654
No 102
>PLN02940 riboflavin kinase
Probab=95.76 E-value=0.006 Score=61.83 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=69.0
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHH-HcCCCCceeecccEEeccCCCC------CceeccccccCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAK-LLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQE 205 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~-~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~ 205 (387)
.+.+.||+.++|+.+. +.+.+.|-|++.+.++..+++ ..+-.. +| +.+++.+++.. .+.+-+++++-.+
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~-~F--d~ii~~d~v~~~KP~p~~~~~a~~~lgv~p 167 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKE-SF--SVIVGGDEVEKGKPSPDIFLEAAKRLNVEP 167 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHh-hC--CEEEehhhcCCCCCCHHHHHHHHHHcCCCh
Confidence 3568899999999997 669999999999999998887 555443 78 77888777542 2334455666678
Q ss_pred CCeEEEeCChhhhhcCCCCeeEe
Q 036523 206 RGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 206 ~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
+.+|+|+|++.-.......|+.+
T Consensus 168 ~~~l~VGDs~~Di~aA~~aGi~~ 190 (382)
T PLN02940 168 SNCLVIEDSLPGVMAGKAAGMEV 190 (382)
T ss_pred hHEEEEeCCHHHHHHHHHcCCEE
Confidence 89999999997555444556553
No 103
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.69 E-value=0.021 Score=53.16 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=42.7
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEE
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI 185 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~ 185 (387)
++++||+.+.++.+. ..+.++|.|.|-..++++|.+.+.-+. .+ +.++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~-an~l~ 125 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VV-ANELE 125 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-he-eeEEE
Confidence 899999999999998 669999999999999999999998875 34 44444
No 104
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.68 E-value=0.017 Score=50.02 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=58.5
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC-----CceeccccccCCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD-----TGKKNLDLVLGQERG 207 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~-----~~~KdL~~l~~~~~~ 207 (387)
.....||+.++|+.+. +.+.++|.|++.+.++..+++.+ - ..+| ..+++.++... .+.+-+++++.+. .
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f--~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~ 136 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYF--DLILGSDEFGAKPEPEIFLAALESLGLPP-E 136 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcC--cEEEecCCCCCCcCHHHHHHHHHHcCCCC-C
Confidence 3455699999999996 67999999999999999999985 2 3478 67777766531 1233345555556 8
Q ss_pred eEEEeCChh
Q 036523 208 VVIVDDTAE 216 (387)
Q Consensus 208 vvIiDD~~~ 216 (387)
+++|+|++.
T Consensus 137 ~l~iGDs~~ 145 (154)
T TIGR01549 137 VLHVGDNLN 145 (154)
T ss_pred EEEEeCCHH
Confidence 999999964
No 105
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.66 E-value=0.013 Score=52.00 Aligned_cols=52 Identities=27% Similarity=0.294 Sum_probs=34.2
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG 160 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g 160 (387)
++.+|||||||.+......+. ...| |..+-|++.+-|+++. +.|.|+|+||.
T Consensus 2 ia~fD~DgTLi~~~s~~~f~~-----------~~~D------------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGKKFPK-----------DPDD------------WKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp EEEE-SCTTTEE-STSTTS-S-----------STCG------------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred EEEEeCCCCccCCCCCCcCcC-----------CHHH------------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 689999999999875321110 0011 2346689999999998 68999999996
No 106
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.54 E-value=0.014 Score=52.56 Aligned_cols=92 Identities=22% Similarity=0.171 Sum_probs=62.5
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCC---CC------cee--c----c
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFK---DT------GKK--N----L 198 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~---~~------~~K--d----L 198 (387)
+.++||+.++|+.+. +.+.++|.|++.+.+++.+++.+..+. +| ...+.+.+... .. ..| - +
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~-~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VY-SNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EE-EEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 578999999999997 679999999999999999999988664 67 56655433211 00 011 1 1
Q ss_pred ccccCCCCCeEEEeCChhhhhcCCCCeeEe
Q 036523 199 DLVLGQERGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 199 ~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
+.++.+.+.+++|.|+..-...-...++++
T Consensus 157 ~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 157 RELNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred HHhCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 223345678999999975443323344433
No 107
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.53 E-value=0.014 Score=53.00 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=57.8
Q ss_pred EeeCccHHHHHHHHhh-cccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 135 VKLRPYIRSFLKEACK-MYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~-~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
+.+-||+.++|+.+.+ .+.+.|.|++.+.+ ..+++.++-.+ +| +.+++.++... .+.+-++.++.+++.
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~ 179 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YF--DFVVTSYEVGAEKPDPKIFQEALERAGISPEE 179 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hc--ceEEeecccCCCCCCHHHHHHHHHHcCCChhH
Confidence 3678999999999985 69999999998764 67777776544 78 66776555431 133445566667899
Q ss_pred eEEEeCCh
Q 036523 208 VVIVDDTA 215 (387)
Q Consensus 208 vvIiDD~~ 215 (387)
+|+|+|++
T Consensus 180 ~~~IgD~~ 187 (203)
T TIGR02252 180 ALHIGDSL 187 (203)
T ss_pred EEEECCCc
Confidence 99999996
No 108
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.50 E-value=0.0044 Score=56.85 Aligned_cols=93 Identities=17% Similarity=-0.006 Sum_probs=61.9
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHH--HHHHHHHcCCCCceeecccEEeccCCC--C----CceeccccccCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHY--AEMIAKLLDPKCEYYISSRLITCEDFK--D----TGKKNLDLVLGQ 204 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~Y--A~~i~~~LDP~~~~F~~~Ri~srd~~~--~----~~~KdL~~l~~~ 204 (387)
.+.+.||+.++|+.+. +.|.++|.|++...+ +......++- ..+| +.+++.++.. . .+.+-+++++-+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~g~~ 168 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALF--DAVVESCLEGLRKPDPRIYQLMLERLGVA 168 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhC--CEEEEeeecCCCCCCHHHHHHHHHHcCCC
Confidence 4678999999999998 569999999997655 3222222222 2368 6666554432 1 234555666667
Q ss_pred CCCeEEEeCChhhhhcCCCCeeEec
Q 036523 205 ERGVVIVDDTAEVWKDHKENLILVG 229 (387)
Q Consensus 205 ~~~vvIiDD~~~~w~~~~~N~I~I~ 229 (387)
++.+|+|||++.-.......|+...
T Consensus 169 ~~~~l~i~D~~~di~aA~~aG~~~i 193 (211)
T TIGR02247 169 PEECVFLDDLGSNLKPAAALGITTI 193 (211)
T ss_pred HHHeEEEcCCHHHHHHHHHcCCEEE
Confidence 8889999999876655455666543
No 109
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.37 E-value=0.017 Score=59.91 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=67.2
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC-----CceeccccccCCCCC
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD-----TGKKNLDLVLGQERG 207 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~-----~~~KdL~~l~~~~~~ 207 (387)
.+++.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. || ..+++.++... .+.+-++.+ +++.
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f--~~i~~~d~v~~~~kP~~~~~al~~l--~~~~ 402 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WV--TETFSIEQINSLNKSDLVKSILNKY--DIKE 402 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hc--ceeEecCCCCCCCCcHHHHHHHHhc--Ccce
Confidence 3678999999999997 679999999999999999999988765 78 66777766431 122223333 3578
Q ss_pred eEEEeCChhhhhcCCCCeeEe
Q 036523 208 VVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 208 vvIiDD~~~~w~~~~~N~I~I 228 (387)
+|+|.|++.-.......|+.+
T Consensus 403 ~v~VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 403 AAVVGDRLSDINAAKDNGLIA 423 (459)
T ss_pred EEEEeCCHHHHHHHHHCCCeE
Confidence 999999996554445566543
No 110
>PLN02811 hydrolase
Probab=95.24 E-value=0.012 Score=54.67 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=63.0
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHH-HHHcCCCCceeecccEEecc--CCCC------Cceecccccc--
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMI-AKLLDPKCEYYISSRLITCE--DFKD------TGKKNLDLVL-- 202 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i-~~~LDP~~~~F~~~Ri~srd--~~~~------~~~KdL~~l~-- 202 (387)
+.+.||+.++|+.+. ..+.+.|-|++.+.+.... .+..... .+| +.+++.+ ++.. .+.+-+++++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f--~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~ 153 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLM--HHVVTGDDPEVKQGKPAPDIFLAAARRFEDG 153 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhC--CEEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence 567899999999997 5799999999998766543 3222222 367 6777777 5431 2344455554
Q ss_pred -CCCCCeEEEeCChhhhhcCCCCeeEe
Q 036523 203 -GQERGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 203 -~~~~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
...+.+|+|+|++.-.......|++.
T Consensus 154 ~~~~~~~v~IgDs~~di~aA~~aG~~~ 180 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVEAAKNAGMSV 180 (220)
T ss_pred CCCccceEEEeccHhhHHHHHHCCCeE
Confidence 46789999999997665555566654
No 111
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.14 E-value=0.038 Score=47.34 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=39.5
Q ss_pred eeCccHHHHHHHH-hhcccEEEEcCCcHHHHH------------HHHHHcCCCCceeecccEEecc
Q 036523 136 KLRPYIRSFLKEA-CKMYDIYICTMGNRHYAE------------MIAKLLDPKCEYYISSRLITCE 188 (387)
Q Consensus 136 ~lRPgl~eFL~~l-s~~yel~IyT~g~~~YA~------------~i~~~LDP~~~~F~~~Ri~srd 188 (387)
...|.+.+.|+++ .+.+++++.|+-...... .+.+.|+-.+.-| +.|+-|.
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY--d~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY--DEIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC--ceEEeCC
Confidence 4678899999998 578999999988877766 7778888777555 6666544
No 112
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=95.09 E-value=0.005 Score=54.60 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=58.1
Q ss_pred EEeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCC
Q 036523 134 LVKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERG 207 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 207 (387)
.+.+.||+.++|+. +.|.||+.+.++..+++.+.-.. +| +.+++.++.+. .+.+-+++++.+++.
T Consensus 88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~f--d~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~ 158 (175)
T TIGR01493 88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YF--DRAFSVDTVRAYKPDPVVYELVFDTVGLPPDR 158 (175)
T ss_pred cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HH--hhhccHhhcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 35689999999993 78999999999999999987654 78 56777776432 244556677778899
Q ss_pred eEEEeCCh
Q 036523 208 VVIVDDTA 215 (387)
Q Consensus 208 vvIiDD~~ 215 (387)
+++|+|++
T Consensus 159 ~l~vgD~~ 166 (175)
T TIGR01493 159 VLMVAAHQ 166 (175)
T ss_pred eEeEecCh
Confidence 99999996
No 113
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.04 E-value=0.0067 Score=60.13 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=59.7
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccE------Eecc---CCCCCcee-----c-
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRL------ITCE---DFKDTGKK-----N- 197 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri------~srd---~~~~~~~K-----d- 197 (387)
.+.++||+.++|+.+. ..+.+.|.|+|...+++.+.+.++-+. .| .+.+ ++-. +.....-| .
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~-an~lei~dg~ltg~v~g~iv~~k~K~~~L~~l 256 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AV-ANELEIMDGKLTGNVLGDIVDAQYKADTLTRL 256 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EE-EeEEEEECCEEEeEecCccCCcccHHHHHHHH
Confidence 3678999999999998 569999999999999999999887643 23 2211 1100 11100011 1
Q ss_pred cccccCCCCCeEEEeCChhhhhcCCCCeeEe
Q 036523 198 LDLVLGQERGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 198 L~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
++.++-+++.+|.|.|...=.+.-...|+.|
T Consensus 257 a~~lgi~~~qtIaVGDg~NDl~m~~~AGlgi 287 (322)
T PRK11133 257 AQEYEIPLAQTVAIGDGANDLPMIKAAGLGI 287 (322)
T ss_pred HHHcCCChhhEEEEECCHHHHHHHHHCCCeE
Confidence 1233446789999999986554333344444
No 114
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.00 E-value=0.034 Score=45.55 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=24.5
Q ss_pred ccHHHHHHHHhh-cccEEEEcCCc----HHHHHHH
Q 036523 139 PYIRSFLKEACK-MYDIYICTMGN----RHYAEMI 168 (387)
Q Consensus 139 Pgl~eFL~~ls~-~yel~IyT~g~----~~YA~~i 168 (387)
||+.+||+.+.+ ...+++.||++ .+|+..+
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 999999999985 59999999998 5555555
No 115
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=94.88 E-value=0.035 Score=50.31 Aligned_cols=74 Identities=14% Similarity=0.019 Sum_probs=47.7
Q ss_pred hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEec
Q 036523 150 KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVG 229 (387)
Q Consensus 150 ~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~ 229 (387)
+.+++.|-|+.....+..+++.+.-.. +| .. .++-.....+-++.++-+.+.++.|.|+..=...-...|+.+.
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f-~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LY-QG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-ee-cC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 789999999999999999999987654 56 21 1111111223344445567889999888754443333455543
No 116
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.87 E-value=0.027 Score=64.30 Aligned_cols=89 Identities=7% Similarity=0.068 Sum_probs=70.7
Q ss_pred eCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCCeE
Q 036523 137 LRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERGVV 209 (387)
Q Consensus 137 lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~vv 209 (387)
+-||+.++|+.|. +.|.+.|.|++.+.+++.+++.++-...+| +.+++.+++.. .+.+-+++++.+++.+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~F--d~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v 239 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMF--DAIVSADAFENLKPAPDIFLAAAKILGVPTSECV 239 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHC--CEEEECcccccCCCCHHHHHHHHHHcCcCcccEE
Confidence 5799999999997 679999999999999999999987654578 77887777642 24455666777788999
Q ss_pred EEeCChhhhhcCCCCeeE
Q 036523 210 IVDDTAEVWKDHKENLIL 227 (387)
Q Consensus 210 IiDD~~~~w~~~~~N~I~ 227 (387)
+|+|++.-.......|+.
T Consensus 240 ~IgDs~~Di~AA~~aGm~ 257 (1057)
T PLN02919 240 VIEDALAGVQAARAAGMR 257 (1057)
T ss_pred EEcCCHHHHHHHHHcCCE
Confidence 999998766554455554
No 117
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=94.83 E-value=0.0042 Score=56.51 Aligned_cols=81 Identities=25% Similarity=0.158 Sum_probs=44.6
Q ss_pred EeeCccHHHHHHHHhhc-ccEEEEcCCcHH----HHHHHHHHcCCC-CceeecccEEeccCCCCCceeccccccCCCCCe
Q 036523 135 VKLRPYIRSFLKEACKM-YDIYICTMGNRH----YAEMIAKLLDPK-CEYYISSRLITCEDFKDTGKKNLDLVLGQERGV 208 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~-yel~IyT~g~~~----YA~~i~~~LDP~-~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~v 208 (387)
...=||+.|.|++|.+. +++++-|+.... -+..-.+.|+-. +..+ .++++... .|++ +.+|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~------~K~~--v~~D---- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTG------DKTL--VGGD---- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEES------SGGG--C--S----
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEec------CCCe--Eecc----
Confidence 56779999999999976 577777776554 133334455433 1122 23333221 2432 3333
Q ss_pred EEEeCChhhhhcCCCCeeEe
Q 036523 209 VIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 209 vIiDD~~~~w~~~~~N~I~I 228 (387)
|+|||++.........|+++
T Consensus 139 vlIDD~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAGIPV 158 (191)
T ss_dssp EEEESSSHHHSS-SSESSEE
T ss_pred EEecCChHHHHhccCCCceE
Confidence 89999999887555666444
No 118
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=94.59 E-value=0.014 Score=62.00 Aligned_cols=93 Identities=26% Similarity=0.368 Sum_probs=75.1
Q ss_pred hhhHHHHhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHH
Q 036523 290 RSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWI 369 (387)
Q Consensus 290 r~il~~~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl 369 (387)
+..-...|-.+|.|+.++|-|+-. ++.+.+....+.-||.+.. -+..+||||.....+.-.-.|......+|..+|.
T Consensus 200 ~~f~d~hrl~~feg~~~~f~gF~~--ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ewf 276 (850)
T KOG3524|consen 200 PCFVDKHRLGVFEGLSLFFHGFKQ--EEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEWF 276 (850)
T ss_pred cchhhhhccccccCCeEeecCCcH--HHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeecccce
Confidence 345567788999999999988543 3477888899999999998 6779999999876555444566667899999999
Q ss_pred HHHHHhcccCCCCCCC
Q 036523 370 YAAYYLWSRQAENDYF 385 (387)
Q Consensus 370 ~~c~~~~~r~dE~~Y~ 385 (387)
|-++.+..+.-|..|.
T Consensus 277 w~siq~g~~a~e~~yl 292 (850)
T KOG3524|consen 277 WVSIQRGCCAIEDNYL 292 (850)
T ss_pred EEEEecchhcccccee
Confidence 9999888888888875
No 119
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=94.43 E-value=0.093 Score=48.48 Aligned_cols=85 Identities=9% Similarity=0.097 Sum_probs=56.7
Q ss_pred EEeeCccHHHHHHHHhh-cccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCC-C--CC--------------ce
Q 036523 134 LVKLRPYIRSFLKEACK-MYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDF-K--DT--------------GK 195 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~-~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~-~--~~--------------~~ 195 (387)
.+.+|||+.+||+.+.+ .+.++|.|++.+.|++++++.+.+...+| ..++...++. . .. ..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~-~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIY-CNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEE-eceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 47899999999999985 69999999999999999999886544444 4343322111 0 00 01
Q ss_pred eccccccCCCCCeEEEeCChhhhh
Q 036523 196 KNLDLVLGQERGVVIVDDTAEVWK 219 (387)
Q Consensus 196 KdL~~l~~~~~~vvIiDD~~~~w~ 219 (387)
+-++.+....+.++.|.|...=..
T Consensus 147 ~~l~~~~~~~~~~i~iGDg~~D~~ 170 (214)
T TIGR03333 147 SLIRKLSEPNDYHIVIGDSVTDVE 170 (214)
T ss_pred HHHHHHhhcCCcEEEEeCCHHHHH
Confidence 122233345667888888875443
No 120
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=94.25 E-value=0.07 Score=48.44 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=56.3
Q ss_pred EEeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEec-------cCCCCCcee--ccccccCC
Q 036523 134 LVKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITC-------EDFKDTGKK--NLDLVLGQ 204 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~sr-------d~~~~~~~K--dL~~l~~~ 204 (387)
.+.+.||+.+||+.+.+.+.++|.|++.+.+++.+++.++-.. +| ...+... .+......| -+..+...
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f-~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~ 143 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LF-CHSLEVDEDGMITGYDLRQPDGKRQAVKALKSL 143 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hh-cceEEECCCCeEECccccccchHHHHHHHHHHh
Confidence 4567899999999998669999999999999999999987654 56 4433221 111111111 12222333
Q ss_pred CCCeEEEeCChhhh
Q 036523 205 ERGVVIVDDTAEVW 218 (387)
Q Consensus 205 ~~~vvIiDD~~~~w 218 (387)
...++.|.|+..=.
T Consensus 144 ~~~~v~iGDs~~D~ 157 (205)
T PRK13582 144 GYRVIAAGDSYNDT 157 (205)
T ss_pred CCeEEEEeCCHHHH
Confidence 56899999998533
No 121
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.08 E-value=0.17 Score=48.63 Aligned_cols=58 Identities=28% Similarity=0.205 Sum_probs=46.3
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcH
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNR 162 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~ 162 (387)
...+++||||||+.+.. ...|...+.|+.+. +.+.++|.|.-..
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~ 48 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------------------------YSYEPAKPALKALKEKGIPVIPCTSKTA 48 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 34799999999997532 02366788899888 4689999999999
Q ss_pred HHHHHHHHHcCCCC
Q 036523 163 HYAEMIAKLLDPKC 176 (387)
Q Consensus 163 ~YA~~i~~~LDP~~ 176 (387)
..+..+++.++...
T Consensus 49 ~~~~~~~~~l~l~~ 62 (273)
T PRK00192 49 AEVEVLRKELGLED 62 (273)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999987654
No 122
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=93.58 E-value=0.21 Score=47.45 Aligned_cols=69 Identities=19% Similarity=0.099 Sum_probs=54.6
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHH-hhcccEEEEcCCcH
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEA-CKMYDIYICTMGNR 162 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~l-s~~yel~IyT~g~~ 162 (387)
...+++||||||+..... ..|...+.|+++ .+...++|-|--..
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------------------i~~~~~~al~~~~~~g~~v~iaTGR~~ 47 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-----------------------------------ISPETKEALARLREKGVKVVLATGRPL 47 (264)
T ss_pred eeEEEEcCCCCccCCCCc-----------------------------------cCHHHHHHHHHHHHCCCEEEEECCCCh
Confidence 458999999999998631 457778888877 48999999999999
Q ss_pred HHHHHHHHHcCCCCcee--ecccEEec
Q 036523 163 HYAEMIAKLLDPKCEYY--ISSRLITC 187 (387)
Q Consensus 163 ~YA~~i~~~LDP~~~~F--~~~Ri~sr 187 (387)
..+.++++.|..++-++ .|..|+..
T Consensus 48 ~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 48 PDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred HHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 99999999999887332 35555543
No 123
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=93.39 E-value=0.17 Score=49.18 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=55.8
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcC---CCCceeecccEEeccCCC--C---C----ceec--c
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLD---PKCEYYISSRLITCEDFK--D---T----GKKN--L 198 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LD---P~~~~F~~~Ri~srd~~~--~---~----~~Kd--L 198 (387)
-+.+|||+.+||+.|. ....++|+|+|...+++.+++.++ +....+ ++++...++.. + . +-|. +
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~Iv-SN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVV-SNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEE-eeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 4789999999999997 669999999999999999999653 343444 55544322211 1 1 1121 1
Q ss_pred c-----ccc--CCCCCeEEEeCChh
Q 036523 199 D-----LVL--GQERGVVIVDDTAE 216 (387)
Q Consensus 199 ~-----~l~--~~~~~vvIiDD~~~ 216 (387)
. .+. .+.+.+|+|.|+..
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~ 222 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQG 222 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChh
Confidence 1 122 35678999999985
No 124
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=93.26 E-value=0.23 Score=45.74 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCC
Q 036523 141 IRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPK 175 (387)
Q Consensus 141 l~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~ 175 (387)
..+.|+.+. +...++|.|......+.++++.+...
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 678888887 56899999999999999999998754
No 125
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=93.24 E-value=0.24 Score=46.95 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=43.6
Q ss_pred EEeeCccHHHHHHHHh---hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEe
Q 036523 134 LVKLRPYIRSFLKEAC---KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLIT 186 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls---~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~s 186 (387)
-+.+.||..+|++.++ ..++++|-+.|+.-|-+.|++.-+-.. +| +.|+|
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f--~~I~T 121 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CF--SEIFT 121 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-cc--ceEEe
Confidence 4678999999999994 489999999999999999999988765 67 66775
No 126
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=93.22 E-value=0.17 Score=50.02 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=42.6
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh-----cccEEEEcC
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK-----MYDIYICTM 159 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~-----~yel~IyT~ 159 (387)
+.++||+||||+++.. .-||+.++|+.+.. ...+.++||
T Consensus 1 ~~~ifD~DGvL~~g~~------------------------------------~i~ga~eal~~L~~~~~~~g~~~~flTN 44 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK------------------------------------PIAGASDALRRLNRNQGQLKIPYIFLTN 44 (321)
T ss_pred CEEEEeCcCceECCcc------------------------------------ccHHHHHHHHHHhccccccCCCEEEEec
Confidence 4689999999998752 23899999999986 788999998
Q ss_pred Cc----HHHHHHHHHHcC
Q 036523 160 GN----RHYAEMIAKLLD 173 (387)
Q Consensus 160 g~----~~YA~~i~~~LD 173 (387)
++ +.+|+.+.+.++
T Consensus 45 n~g~s~~~~~~~l~~~lG 62 (321)
T TIGR01456 45 GGGFSERARAEEISSLLG 62 (321)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 85 677887766654
No 127
>PTZ00445 p36-lilke protein; Provisional
Probab=93.16 E-value=0.066 Score=49.77 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=81.0
Q ss_pred ccCHHHHHHHhhccchhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccH
Q 036523 62 EFGKDEVTRLKRMNSEIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYI 141 (387)
Q Consensus 62 ~vs~~~a~~~~~~~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl 141 (387)
.+|..|+...- ++.|.+.+=..+++|||+|||-...---..|.. | ...+....+|.+
T Consensus 24 ~~~~~~~~~~~---v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~------------~--------~~~~~~~~tpef 80 (219)
T PTZ00445 24 HLNPHESADKF---VDLLNECGIKVIASDFDLTMITKHSGGYIDPDN------------D--------DIRVLTSVTPDF 80 (219)
T ss_pred cCCHHHHHHHH---HHHHHHcCCeEEEecchhhhhhhhcccccCCCc------------c--------hhhhhccCCHHH
Confidence 34555544322 334556677899999999998632100001100 0 012345689999
Q ss_pred HHHHHHHh-hcccEEEEcCCcHHH-----------HHHHHH-HcCCCCceeecccEEe------ccC-------CC--CC
Q 036523 142 RSFLKEAC-KMYDIYICTMGNRHY-----------AEMIAK-LLDPKCEYYISSRLIT------CED-------FK--DT 193 (387)
Q Consensus 142 ~eFL~~ls-~~yel~IyT~g~~~Y-----------A~~i~~-~LDP~~~~F~~~Ri~s------rd~-------~~--~~ 193 (387)
.++++.|. ..+.|+|-|-+.+.- +..+++ .|+-.+.=|--.++|. .+. .. ..
T Consensus 81 k~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp 160 (219)
T PTZ00445 81 KILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMP 160 (219)
T ss_pred HHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCc
Confidence 99999998 689999999998855 222222 2332211110011110 111 11 11
Q ss_pred ceec------cccccCCCCCeEEEeCChhhhhcCCCCeeEeccc
Q 036523 194 GKKN------LDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231 (387)
Q Consensus 194 ~~Kd------L~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y 231 (387)
..|. +++.+-+++.+++|||++........-|+...-+
T Consensus 161 ~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f 204 (219)
T PTZ00445 161 LDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHV 204 (219)
T ss_pred cchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEc
Confidence 1222 2333457899999999999887655666665433
No 128
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=92.97 E-value=0.18 Score=46.34 Aligned_cols=54 Identities=28% Similarity=0.228 Sum_probs=43.3
Q ss_pred EEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHHH
Q 036523 87 LVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYA 165 (387)
Q Consensus 87 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA 165 (387)
+++||||||+++... .-|...+.|+++. +...++|.|.-....+
T Consensus 1 i~~DlDGTLl~~~~~-----------------------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~ 45 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------------------------ISPETIEALKELQEKGIKLVIATGRSYSSI 45 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHH
T ss_pred cEEEECCceecCCCe-----------------------------------eCHHHHHHHHhhcccceEEEEEccCccccc
Confidence 689999999996431 2256677788777 8899999999999999
Q ss_pred HHHHHHcCCC
Q 036523 166 EMIAKLLDPK 175 (387)
Q Consensus 166 ~~i~~~LDP~ 175 (387)
..+++.+.-.
T Consensus 46 ~~~~~~~~~~ 55 (254)
T PF08282_consen 46 KRLLKELGID 55 (254)
T ss_dssp HHHHHHTTHC
T ss_pred ccccccccch
Confidence 9999977644
No 129
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=92.89 E-value=0.1 Score=45.36 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=25.2
Q ss_pred EeeCccHHHHHHHHhhcccEEEEcCCcH
Q 036523 135 VKLRPYIRSFLKEACKMYDIYICTMGNR 162 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~yel~IyT~g~~ 162 (387)
...-||.++-++++.+.|++||-|+++.
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamd 94 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMD 94 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccC
Confidence 5677999999999999999999999953
No 130
>PLN02645 phosphoglycolate phosphatase
Probab=92.46 E-value=0.15 Score=50.16 Aligned_cols=113 Identities=7% Similarity=0.038 Sum_probs=63.5
Q ss_pred chhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccE
Q 036523 76 SEIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDI 154 (387)
Q Consensus 76 ~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel 154 (387)
...++.+-| .+++|+||||.+... .=||..++|+.+. +...+
T Consensus 21 ~~~~~~~~~-~~~~D~DGtl~~~~~------------------------------------~~~ga~e~l~~lr~~g~~~ 63 (311)
T PLN02645 21 ADELIDSVE-TFIFDCDGVIWKGDK------------------------------------LIEGVPETLDMLRSMGKKL 63 (311)
T ss_pred HHHHHHhCC-EEEEeCcCCeEeCCc------------------------------------cCcCHHHHHHHHHHCCCEE
Confidence 344555444 889999999987531 1189999999997 68999
Q ss_pred EEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEe
Q 036523 155 YICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILV 228 (387)
Q Consensus 155 ~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I 228 (387)
++.|+.+..-...+++.|.--|--+..+.|++.......+.+.... ...++|.+++.....-.. ...|+.+
T Consensus 64 ~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~~--~~~~~V~viG~~~~~~~l-~~~Gi~~ 134 (311)
T PLN02645 64 VFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSINF--PKDKKVYVIGEEGILEEL-ELAGFQY 134 (311)
T ss_pred EEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhcc--CCCCEEEEEcCHHHHHHH-HHCCCEE
Confidence 9999988444444444332222101135666543322222222111 112457777775543332 2345543
No 131
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.10 E-value=0.35 Score=45.29 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=30.1
Q ss_pred ccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCC
Q 036523 139 PYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPK 175 (387)
Q Consensus 139 Pgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~ 175 (387)
|...++|+++. +...+++.|.-++..+..+++.+...
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 45778888888 56899999999888888888888754
No 132
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.02 E-value=0.4 Score=45.90 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=47.0
Q ss_pred CCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC
Q 036523 82 QRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG 160 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g 160 (387)
+.+..+++||||||++... .++ |-..+-|+++. +...++|.|.-
T Consensus 5 ~~~~lI~~DlDGTLL~~~~--~i~---------------------------------~~~~~ai~~l~~~Gi~~viaTGR 49 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT--YDW---------------------------------QPAAPWLTRLREAQVPVILCSSK 49 (271)
T ss_pred CCCeEEEEeCccCCcCCCC--cCc---------------------------------HHHHHHHHHHHHcCCeEEEEcCC
Confidence 3456889999999998632 111 23445566766 56889999988
Q ss_pred cHHHHHHHHHHcCCCCcee---ecccEE
Q 036523 161 NRHYAEMIAKLLDPKCEYY---ISSRLI 185 (387)
Q Consensus 161 ~~~YA~~i~~~LDP~~~~F---~~~Ri~ 185 (387)
....+..+++.|+.++.++ +|..|+
T Consensus 50 ~~~~i~~~~~~l~~~~~~~I~~NGa~I~ 77 (271)
T PRK03669 50 TAAEMLPLQQTLGLQGLPLIAENGAVIQ 77 (271)
T ss_pred CHHHHHHHHHHhCCCCCcEEEeCCCEEE
Confidence 8888888998887653233 344554
No 133
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=91.94 E-value=0.37 Score=45.49 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=43.5
Q ss_pred EEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHHH
Q 036523 87 LVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYA 165 (387)
Q Consensus 87 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA 165 (387)
+++||||||+.... . +.|...+.|+++. +...++|-|.-+...+
T Consensus 2 i~~DlDGTLl~~~~--~---------------------------------i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~ 46 (256)
T TIGR00099 2 IFIDLDGTLLNDDH--T---------------------------------ISPSTKEALAKLREKGIKVVLATGRPYKEV 46 (256)
T ss_pred EEEeCCCCCCCCCC--c---------------------------------cCHHHHHHHHHHHHCCCeEEEEeCCCHHHH
Confidence 78999999998632 1 2355667788877 5699999999999999
Q ss_pred HHHHHHcCCCC
Q 036523 166 EMIAKLLDPKC 176 (387)
Q Consensus 166 ~~i~~~LDP~~ 176 (387)
..+++.++.+.
T Consensus 47 ~~~~~~~~~~~ 57 (256)
T TIGR00099 47 KNILKELGLDT 57 (256)
T ss_pred HHHHHHcCCCC
Confidence 99998887664
No 134
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=91.92 E-value=0.37 Score=44.25 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=44.2
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHY 164 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~Y 164 (387)
.+++||||||+.... .+-|...+-|+++. +.+.++|.|.-....
T Consensus 3 ~v~~DlDGTLl~~~~-----------------------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~ 47 (215)
T TIGR01487 3 LVAIDIDGTLTEPNR-----------------------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPF 47 (215)
T ss_pred EEEEecCCCcCCCCc-----------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchh
Confidence 689999999996431 13356667777776 568999999999999
Q ss_pred HHHHHHHcCCCC
Q 036523 165 AEMIAKLLDPKC 176 (387)
Q Consensus 165 A~~i~~~LDP~~ 176 (387)
+..+++.|+.++
T Consensus 48 ~~~~~~~l~~~~ 59 (215)
T TIGR01487 48 ARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHhCCCC
Confidence 999999998775
No 135
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=91.88 E-value=0.29 Score=46.35 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=19.2
Q ss_pred hhhcCCceEEEEeCCCceeeeec
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATD 100 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~ 100 (387)
..-+.++..+|||||||+++.+.
T Consensus 73 k~~k~K~~aVvlDlDETvLdNs~ 95 (274)
T COG2503 73 KKKKGKKKAVVLDLDETVLDNSA 95 (274)
T ss_pred ccccCCCceEEEecchHhhcCcc
Confidence 45567778999999999999874
No 136
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=91.67 E-value=0.84 Score=41.06 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=65.6
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcc-c--EE
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMY-D--IY 155 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~y-e--l~ 155 (387)
|.+.+=..||+|+|+||..-... .+-|-+.+.++++.+.| . +.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~----------------------------------~i~~~~~~~~~~l~~~~~~~~v~ 81 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYED----------------------------------EIPPEYAEWLNELKKQFGKDRVL 81 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcC----------------------------------cCCHHHHHHHHHHHHHCCCCeEE
Confidence 66667789999999999754321 14477888899998665 3 99
Q ss_pred EEcCC-------cHHHHHHHHHHcCCCCceeecccEEeccCCCCC-ceec-ccccc-----CCCCCeEEEeCCh--hhhh
Q 036523 156 ICTMG-------NRHYAEMIAKLLDPKCEYYISSRLITCEDFKDT-GKKN-LDLVL-----GQERGVVIVDDTA--EVWK 219 (387)
Q Consensus 156 IyT~g-------~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~-~~Kd-L~~l~-----~~~~~vvIiDD~~--~~w~ 219 (387)
|++|+ ...-|..+.+.|.-. +| .++ ...+ ..+. ++.+. ..++.+++|.|+- |++.
T Consensus 82 IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl-~h~------~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~ 152 (168)
T PF09419_consen 82 IVSNSAGSSDDPDGERAEALEKALGIP--VL-RHR------AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLM 152 (168)
T ss_pred EEECCCCcccCccHHHHHHHHHhhCCc--EE-EeC------CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHH
Confidence 99998 477788888888743 23 222 1111 1111 22222 2478999999997 5666
Q ss_pred cCC
Q 036523 220 DHK 222 (387)
Q Consensus 220 ~~~ 222 (387)
.+.
T Consensus 153 gN~ 155 (168)
T PF09419_consen 153 GNR 155 (168)
T ss_pred hhc
Confidence 543
No 137
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=91.65 E-value=0.65 Score=43.95 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=40.6
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRH 163 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~ 163 (387)
..+++||||||+.... .++ |...+-|+++. +...++|-|.-...
T Consensus 4 kli~~DlDGTLl~~~~--~i~---------------------------------~~~~~ai~~~~~~G~~~~iaTGR~~~ 48 (272)
T PRK10530 4 RVIALDLDGTLLTPKK--TIL---------------------------------PESLEALARAREAGYKVIIVTGRHHV 48 (272)
T ss_pred cEEEEeCCCceECCCC--ccC---------------------------------HHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 4789999999997642 122 33445566665 56788888887777
Q ss_pred HHHHHHHHcCCCC
Q 036523 164 YAEMIAKLLDPKC 176 (387)
Q Consensus 164 YA~~i~~~LDP~~ 176 (387)
.+..+++.|+.++
T Consensus 49 ~~~~~~~~l~~~~ 61 (272)
T PRK10530 49 AIHPFYQALALDT 61 (272)
T ss_pred HHHHHHHhcCCCC
Confidence 7888888887654
No 138
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=91.07 E-value=0.11 Score=48.72 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=58.6
Q ss_pred EeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC------CceeccccccCCCCCe
Q 036523 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD------TGKKNLDLVLGQERGV 208 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~------~~~KdL~~l~~~~~~v 208 (387)
+.+-||+.++|+.+.+.|.+.|.|+|+.. ++..+-. .|| +.+++.++... .+.+-+++++.+++.+
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~f--d~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYF--EFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhh--ceeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence 56669999999999988999999999875 2444433 378 66776555431 2334455666678899
Q ss_pred EEEeCCh--hhhhcCCCCeeEe
Q 036523 209 VIVDDTA--EVWKDHKENLILV 228 (387)
Q Consensus 209 vIiDD~~--~~w~~~~~N~I~I 228 (387)
|+|.|++ ++-.. ..+|+..
T Consensus 184 ~~VGD~~~~Di~~A-~~aG~~~ 204 (238)
T PRK10748 184 LHVGDDLTTDVAGA-IRCGMQA 204 (238)
T ss_pred EEEcCCcHHHHHHH-HHCCCeE
Confidence 9998884 55553 4566654
No 139
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=90.58 E-value=0.59 Score=44.36 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=42.2
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRH 163 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~ 163 (387)
..+++||||||++... .+ -|...+-|+++. +...++|-|--...
T Consensus 4 kli~~DlDGTLl~~~~--~i---------------------------------~~~~~~ai~~l~~~G~~~~iaTGR~~~ 48 (270)
T PRK10513 4 KLIAIDMDGTLLLPDH--TI---------------------------------SPAVKQAIAAARAKGVNVVLTTGRPYA 48 (270)
T ss_pred EEEEEecCCcCcCCCC--cc---------------------------------CHHHHHHHHHHHHCCCEEEEecCCChH
Confidence 4789999999998642 12 244456677776 56889999888888
Q ss_pred HHHHHHHHcCCCC
Q 036523 164 YAEMIAKLLDPKC 176 (387)
Q Consensus 164 YA~~i~~~LDP~~ 176 (387)
.+..+++.++.++
T Consensus 49 ~~~~~~~~l~~~~ 61 (270)
T PRK10513 49 GVHRYLKELHMEQ 61 (270)
T ss_pred HHHHHHHHhCCCC
Confidence 8888888887643
No 140
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=90.52 E-value=0.98 Score=49.21 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=80.6
Q ss_pred eeEeccccchhhhhhhccCCCCccccc---cccCchhhhHHHHHHHHHHHHHHhhhhcCCCccccCchhhhHHHHhh---
Q 036523 225 LILVGKYNYFKERIRKSKNNDQKSYSE---RKSDESELNGALVNVLRVLKRVHELFFENPENLVWGDVRSFLAKIRR--- 298 (387)
Q Consensus 225 ~I~I~~y~ff~~~~~~~~~~~~~s~~~---~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~DVr~il~~~R~--- 298 (387)
.++..|+++|.-+..- ..-+++ ..+|.-.+|-.|..|..+|..+.. ..|-.+.+-....
T Consensus 713 l~p~~P~~~fh~~e~~-----~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~----------S~ds~~~~~~~~~~~~ 777 (881)
T KOG0966|consen 713 LLPWLPRDLFHATEKG-----REKLAKEVDCLGDSYENDIDLEQLKKVLSGIKK----------SQDSLPPMGASEKDSL 777 (881)
T ss_pred ccccccHHHHhhCchH-----HHHHHHHHhhhcchhhhhccHHHHHHHHhhhhh----------cccccCchhhhhhhcH
Confidence 6788888777654210 000000 113334566668888888888876 2332222222111
Q ss_pred -----hcccceee--eeccCCCCCCchHHHHHHHHHhCCeeeccc------CCCceEEEEcC--CCchHH--HHHHhC--
Q 036523 299 -----QILAGCTL--FFNMGDVGPQEFPLLRRRAEELGAACTDVH------DSSVTHVVSTR--QATEGR--RLAEQH-- 359 (387)
Q Consensus 299 -----~vl~G~~i--~fSg~~~~~~~~~~l~~la~~lGa~v~~~v------~~~vTHlVa~~--~~t~K~--~~A~~~-- 359 (387)
-.|..+++ ..++.+. .+...+.-.++.+|+.++..- ....||+|+.- ..+.+. ..|.+.
T Consensus 778 e~r~~~~~~~~~~f~~~~~~~~--se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~ 855 (881)
T KOG0966|consen 778 ERRFSLFLSSLRMFYVLRRKLS--SEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTI 855 (881)
T ss_pred HHhhccccccceeeeccccccc--HHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcc
Confidence 11222222 2223332 112233445777899987543 35789999872 223332 233332
Q ss_pred CCeeeCHHHHHHHHHhcccCCCCCCC
Q 036523 360 NNFLVHPRWIYAAYYLWSRQAENDYF 385 (387)
Q Consensus 360 gi~IV~~~Wl~~c~~~~~r~dE~~Y~ 385 (387)
.-+||+|.|+.+|......+||+.|+
T Consensus 856 ~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 856 KRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred cccccCHHHHHHhhcccccCccccCC
Confidence 23899999999999999999999985
No 141
>PRK10444 UMP phosphatase; Provisional
Probab=90.39 E-value=0.4 Score=45.70 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=40.0
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHY 164 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~Y 164 (387)
.+++||||||++... .=||..+||+.+. +...+++.|+.+..-
T Consensus 3 ~v~~DlDGtL~~~~~------------------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~ 46 (248)
T PRK10444 3 NVICDIDGVLMHDNV------------------------------------AVPGAAEFLHRILDKGLPLVLLTNYPSQT 46 (248)
T ss_pred EEEEeCCCceEeCCe------------------------------------eCccHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 678999999998742 2288889999888 578899999988766
Q ss_pred HHHHHHHcC
Q 036523 165 AEMIAKLLD 173 (387)
Q Consensus 165 A~~i~~~LD 173 (387)
+..+++.|.
T Consensus 47 ~~~~~~~l~ 55 (248)
T PRK10444 47 GQDLANRFA 55 (248)
T ss_pred HHHHHHHHH
Confidence 666666553
No 142
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=90.18 E-value=0.88 Score=43.38 Aligned_cols=57 Identities=19% Similarity=0.073 Sum_probs=41.5
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRH 163 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~ 163 (387)
..+++||||||+.... .+ -|...+-|+++. +...++|-|.-...
T Consensus 3 kli~~DlDGTLl~~~~--~i---------------------------------~~~~~~ai~~l~~~G~~~~iaTGR~~~ 47 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH--HL---------------------------------GEKTLSTLARLRERDITLTFATGRHVL 47 (272)
T ss_pred cEEEEeCCCcCcCCCC--cC---------------------------------CHHHHHHHHHHHHCCCEEEEECCCCHH
Confidence 3789999999997542 12 234455666666 56788888888888
Q ss_pred HHHHHHHHcCCCC
Q 036523 164 YAEMIAKLLDPKC 176 (387)
Q Consensus 164 YA~~i~~~LDP~~ 176 (387)
.+..+++.++.++
T Consensus 48 ~~~~~~~~l~~~~ 60 (272)
T PRK15126 48 EMQHILGALSLDA 60 (272)
T ss_pred HHHHHHHHcCCCC
Confidence 8888888887765
No 143
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=90.17 E-value=0.54 Score=41.58 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=40.8
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHY 164 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~Y 164 (387)
.+++|+||||+.+.....+-+ +-+.. ...|++.++++.+. +.|.+++.|.-...-
T Consensus 1 iVisDIDGTL~~sd~~~~~~~---------------------~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~ 56 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVP---------------------IIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQ 56 (157)
T ss_pred CEEEecCCCCccccccccccc---------------------ccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHH
Confidence 378999999998753211100 00001 24699999999998 678888888877666
Q ss_pred HH---HHHHH
Q 036523 165 AE---MIAKL 171 (387)
Q Consensus 165 A~---~i~~~ 171 (387)
+. +.++.
T Consensus 57 ~~~t~~~l~~ 66 (157)
T smart00775 57 ADRTRSYLSQ 66 (157)
T ss_pred HHHHHHHHHH
Confidence 64 44444
No 144
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=90.03 E-value=0.97 Score=42.77 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=29.4
Q ss_pred cHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCC
Q 036523 140 YIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPK 175 (387)
Q Consensus 140 gl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~ 175 (387)
...++++.+. +...++|.|.-+...+..+++.++..
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3678888887 46899999988889899999988753
No 145
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=89.97 E-value=0.54 Score=43.41 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=43.4
Q ss_pred EeeCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEe
Q 036523 135 VKLRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLIT 186 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~s 186 (387)
+.++||+.+||+.+.+.+.++|-|++.+.++.++++.++-+. +| .+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~-an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LL-CHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hh-ceeeEE
Confidence 578999999999999778999999999999999999998764 67 655554
No 146
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=89.88 E-value=0.95 Score=45.63 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=63.0
Q ss_pred cccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC--CCchHHHHHHhCCCeeeCHHHHHHHHHh
Q 036523 300 ILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR--QATEGRRLAEQHNNFLVHPRWIYAAYYL 375 (387)
Q Consensus 300 vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~--~~t~K~~~A~~~gi~IV~~~Wl~~c~~~ 375 (387)
.-+|..|+|++-+. .++..|...+..-|-.|+.+++..+.-|||+. ..+.|...|...||++++-.=+.+++..
T Consensus 294 lv~Gm~v~~~~e~~--~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~~ 369 (377)
T PRK05601 294 LVAGMEVVVAPEIT--MDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVER 369 (377)
T ss_pred cccCcEEEEeCCcc--CCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHHH
Confidence 56799999999776 34678888888999999999999999999985 4577999999999999999888877654
No 147
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=89.86 E-value=1.1 Score=42.94 Aligned_cols=153 Identities=16% Similarity=0.095 Sum_probs=86.0
Q ss_pred CceEEEEeCCCceeeeecCCCCCccchhhh-cc--cccCCCC-CCceee-----ecCceEEEeeCccHHHHHHHHh-hcc
Q 036523 83 RKLQLVLDLDHTLLHATDLDMLAPDDRDYL-MK--RESSASD-GGGLFM-----MDGGLLLVKLRPYIRSFLKEAC-KMY 152 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~-~~--~~~~~~d-~~~~f~-----l~~~~~~v~lRPgl~eFL~~ls-~~y 152 (387)
....+|+|+|.||+-+...-+-+.+-...+ .. ...+..+ ....|. +....-....-|.+.++++.++ +..
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 678899999999998763212222210011 00 0000000 001110 0112234567799999999999 679
Q ss_pred cEEEEcCCcHHHHHHHHHHcCCCCceeecccEEecc----------CCC------------CCcee------ccccccCC
Q 036523 153 DIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCE----------DFK------------DTGKK------NLDLVLGQ 204 (387)
Q Consensus 153 el~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd----------~~~------------~~~~K------dL~~l~~~ 204 (387)
-+..+|+....|...-++.|--.|.=| .+..+..+ .+. +..-| =|..++..
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~f-s~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~ 177 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDF-SSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQS 177 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCc-cccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCC
Confidence 999999999999998888764444334 22211000 000 01112 12334456
Q ss_pred CCCeEEEeCChhhhh----cCCCCeeEeccccchhh
Q 036523 205 ERGVVIVDDTAEVWK----DHKENLILVGKYNYFKE 236 (387)
Q Consensus 205 ~~~vvIiDD~~~~w~----~~~~N~I~I~~y~ff~~ 236 (387)
++.||+|||+.+.-. .....+|..--|+|-..
T Consensus 178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~~ 213 (252)
T PF11019_consen 178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTGA 213 (252)
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcch
Confidence 899999999997553 12347787777777543
No 148
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=89.84 E-value=0.67 Score=40.70 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=41.9
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEE
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI 185 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~ 185 (387)
.+.++||+.++|+.+. ..+.++|.|++.+.|+.++++.++-.. +| +.++.
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~-~~~~~ 121 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VF-ANRLE 121 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-he-eeeEE
Confidence 3568999999999997 669999999999999999999987653 56 55544
No 149
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=89.74 E-value=0.47 Score=45.76 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=32.0
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCc
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGN 161 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~ 161 (387)
.+++|+||||++... .=||+.++|+.+. +...+++.|+.+
T Consensus 4 ~~~~D~DGtl~~~~~------------------------------------~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 4 GFIFDCDGVLWLGER------------------------------------VVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred EEEEeCCCceEcCCe------------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 688999999987531 2288999999998 568899999854
No 150
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=89.67 E-value=0.91 Score=41.84 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=42.5
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRH 163 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~ 163 (387)
..+++||||||+.+.. . +.|...+-|+++. +...++|-|.-...
T Consensus 4 kli~~DlDGTLl~~~~--~---------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~ 48 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--R---------------------------------LSLKAVEAIRKAEKLGIPVILATGNVLC 48 (230)
T ss_pred eEEEEecCCCcCCCCC--c---------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCchH
Confidence 4789999999997532 1 2355566677776 56788888888888
Q ss_pred HHHHHHHHcCCCC
Q 036523 164 YAEMIAKLLDPKC 176 (387)
Q Consensus 164 YA~~i~~~LDP~~ 176 (387)
.+..+++.+..++
T Consensus 49 ~~~~~~~~l~~~~ 61 (230)
T PRK01158 49 FARAAAKLIGTSG 61 (230)
T ss_pred HHHHHHHHhCCCC
Confidence 8888888887654
No 151
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=89.65 E-value=1.1 Score=42.30 Aligned_cols=125 Identities=13% Similarity=-0.005 Sum_probs=70.2
Q ss_pred hhcCCceEEEEeCCCceeeeecCC---CCCccc--hhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcc
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLD---MLAPDD--RDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMY 152 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~---~~~~~~--~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~y 152 (387)
+-..+|..+|||+|+|++...... ....+. ...+..++.. + --..-|++.+|++.+. ..+
T Consensus 72 ~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~-----------~---~apaip~al~l~~~l~~~G~ 137 (229)
T TIGR01675 72 LSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGK-----------G---AAPALPEGLKLYQKIIELGI 137 (229)
T ss_pred ccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHc-----------C---CCCCCHHHHHHHHHHHHCCC
Confidence 345799999999999999986310 000000 0001001000 0 1245699999999986 789
Q ss_pred cEEEEcCCcHHHHHHHHHHcCCCCceeec-ccEEeccC--CCCC--ceecccc--cc-CCCCCeEEEeCChhhhh
Q 036523 153 DIYICTMGNRHYAEMIAKLLDPKCEYYIS-SRLITCED--FKDT--GKKNLDL--VL-GQERGVVIVDDTAEVWK 219 (387)
Q Consensus 153 el~IyT~g~~~YA~~i~~~LDP~~~~F~~-~Ri~srd~--~~~~--~~KdL~~--l~-~~~~~vvIiDD~~~~w~ 219 (387)
+|++.|.=.........+.|.-.| |++ ++++=|.. .... -.|.-.+ +- ..-+-+..|+|...-+.
T Consensus 138 ~Vf~lTGR~e~~r~~T~~nL~~~G--~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 138 KIFLLSGRWEELRNATLDNLINAG--FTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL 210 (229)
T ss_pred EEEEEcCCChHHHHHHHHHHHHcC--CCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence 999999998877666666665455 311 55665642 1110 0132111 11 23456677888865553
No 152
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=89.30 E-value=0.76 Score=41.64 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=30.7
Q ss_pred eCccHHHHHHHHhhc-ccEEEEcCCcHHHHHHHHHHcC
Q 036523 137 LRPYIRSFLKEACKM-YDIYICTMGNRHYAEMIAKLLD 173 (387)
Q Consensus 137 lRPgl~eFL~~ls~~-yel~IyT~g~~~YA~~i~~~LD 173 (387)
..|.+.+.|+++.+. ..++|-|.....++..+++.++
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 347788889999854 8899999999999999988753
No 153
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=88.61 E-value=0.88 Score=41.73 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=25.3
Q ss_pred ccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCC
Q 036523 139 PYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDP 174 (387)
Q Consensus 139 Pgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP 174 (387)
|...+-|+++. +...+++-|--....+..+++.|+.
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 44455566665 5578888888777777788887763
No 154
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=88.36 E-value=0.6 Score=44.56 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=34.8
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRH 163 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~ 163 (387)
.+++||||||.+..... . ..=||..++|+.+. +...+++.|+.+..
T Consensus 3 ~i~~D~DGtl~~~~~~~-----~---------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 3 GVLLDISGVLYISDAKS-----G---------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred EEEEeCCCeEEeCCCcc-----c---------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 68999999999874200 0 02389999999998 57999999986544
No 155
>PRK10976 putative hydrolase; Provisional
Probab=88.34 E-value=1.2 Score=42.25 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=39.3
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRH 163 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~ 163 (387)
..+++||||||+++.. .++ |...+-|+++. +...++|-|--...
T Consensus 3 kli~~DlDGTLl~~~~--~is---------------------------------~~~~~ai~~l~~~G~~~~iaTGR~~~ 47 (266)
T PRK10976 3 QVVASDLDGTLLSPDH--TLS---------------------------------PYAKETLKLLTARGIHFVFATGRHHV 47 (266)
T ss_pred eEEEEeCCCCCcCCCC--cCC---------------------------------HHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 3789999999998642 222 33345555655 56778888877777
Q ss_pred HHHHHHHHcCCCC
Q 036523 164 YAEMIAKLLDPKC 176 (387)
Q Consensus 164 YA~~i~~~LDP~~ 176 (387)
.+..+++.|+.++
T Consensus 48 ~~~~~~~~l~~~~ 60 (266)
T PRK10976 48 DVGQIRDNLEIKS 60 (266)
T ss_pred HHHHHHHhcCCCC
Confidence 7777777777654
No 156
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=88.30 E-value=0.92 Score=40.72 Aligned_cols=116 Identities=14% Similarity=-0.003 Sum_probs=69.0
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHH-HHHHHHhhcccEEEEcCCcHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIR-SFLKEACKMYDIYICTMGNRH 163 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~-eFL~~ls~~yel~IyT~g~~~ 163 (387)
..+|+|.||||..-+..-.-+.++ ..-+-.|-|.- ..|+ .+.+.+.|.|+....
T Consensus 8 ~~~v~d~dGv~tdg~~~~~~~g~~-----------------------~~~~~~~D~~~~~~L~--~~Gi~laIiT~k~~~ 62 (169)
T TIGR02726 8 KLVILDVDGVMTDGRIVINDEGIE-----------------------SRNFDIKDGMGVIVLQ--LCGIDVAIITSKKSG 62 (169)
T ss_pred eEEEEeCceeeECCeEEEcCCCcE-----------------------EEEEecchHHHHHHHH--HCCCEEEEEECCCcH
Confidence 479999999998875321000100 01122444432 2333 367999999999999
Q ss_pred HHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCChhhhhcCCCCeeEeccc
Q 036523 164 YAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDTAEVWKDHKENLILVGKY 231 (387)
Q Consensus 164 YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~I~I~~y 231 (387)
++..+++.+.-.. +| .. + ..-+..+..-++.++-+.+.++.|.|++.=...-...++.+.+-
T Consensus 63 ~~~~~l~~lgi~~-~f-~~-~---kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~ 124 (169)
T TIGR02726 63 AVRHRAEELKIKR-FH-EG-I---KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG 124 (169)
T ss_pred HHHHHHHHCCCcE-EE-ec-C---CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence 9999999997763 67 32 1 11011122233444446788999999986544434456666554
No 157
>PLN02887 hydrolase family protein
Probab=87.69 E-value=1.1 Score=48.14 Aligned_cols=70 Identities=24% Similarity=0.201 Sum_probs=49.3
Q ss_pred HhhccchhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-
Q 036523 71 LKRMNSEIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC- 149 (387)
Q Consensus 71 ~~~~~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls- 149 (387)
.++....|.++.+...+++||||||+++.. .++ |...+-|+++.
T Consensus 295 ~~~~~~~~~~~~~iKLIa~DLDGTLLn~d~--~Is---------------------------------~~t~eAI~kl~e 339 (580)
T PLN02887 295 RKKEGSLRFYKPKFSYIFCDMDGTLLNSKS--QIS---------------------------------ETNAKALKEALS 339 (580)
T ss_pred hhhhcchhhhccCccEEEEeCCCCCCCCCC--ccC---------------------------------HHHHHHHHHHHH
Confidence 444445566777778999999999998642 122 33445566665
Q ss_pred hcccEEEEcCCcHHHHHHHHHHcCCC
Q 036523 150 KMYDIYICTMGNRHYAEMIAKLLDPK 175 (387)
Q Consensus 150 ~~yel~IyT~g~~~YA~~i~~~LDP~ 175 (387)
+...++|-|--...-+..+++.++.+
T Consensus 340 kGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 340 RGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 66888888888888788888877653
No 158
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=87.66 E-value=0.98 Score=43.41 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=42.5
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh--cccEEEEcCCc
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK--MYDIYICTMGN 161 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~--~yel~IyT~g~ 161 (387)
++.+++|+||||+.... .|.+ ..+-|.+.+-|+.+++ ...++|-|--.
T Consensus 14 ~~li~~D~DGTLl~~~~----~p~~--------------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~ 63 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKP----HPDQ--------------------------VVVPDNILQGLQLLATANDGALALISGRS 63 (266)
T ss_pred CEEEEEecCCCCCCCCC----Cccc--------------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 67899999999998653 1211 1234888888999985 56788888777
Q ss_pred HHHHHHHHHHcC
Q 036523 162 RHYAEMIAKLLD 173 (387)
Q Consensus 162 ~~YA~~i~~~LD 173 (387)
..-+..+++.++
T Consensus 64 ~~~~~~~~~~~~ 75 (266)
T PRK10187 64 MVELDALAKPYR 75 (266)
T ss_pred HHHHHHhcCccc
Confidence 777766665443
No 159
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=86.43 E-value=0.91 Score=43.91 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred CceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCc
Q 036523 83 RKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGN 161 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~ 161 (387)
+.-+.++||||||++-.. .=||+.+||+.+. +.-.+++-||++
T Consensus 7 ~y~~~l~DlDGvl~~G~~------------------------------------~ipga~e~l~~L~~~g~~~iflTNn~ 50 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNE------------------------------------AIPGAAEALKRLKAAGKPVIFLTNNS 50 (269)
T ss_pred hcCEEEEcCcCceEeCCc------------------------------------cCchHHHHHHHHHHcCCeEEEEeCCC
Confidence 344689999999998752 1299999999998 458899999988
Q ss_pred HH----HHHHHHHHcCCCCceeecccEEec
Q 036523 162 RH----YAEMIAKLLDPKCEYYISSRLITC 187 (387)
Q Consensus 162 ~~----YA~~i~~~LDP~~~~F~~~Ri~sr 187 (387)
+. |+.++..+..++-. .++|++.
T Consensus 51 ~~s~~~~~~~L~~~~~~~~~---~~~i~TS 77 (269)
T COG0647 51 TRSREVVAARLSSLGGVDVT---PDDIVTS 77 (269)
T ss_pred CCCHHHHHHHHHhhcCCCCC---HHHeecH
Confidence 44 66666664554432 2555543
No 160
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=86.34 E-value=1.2 Score=40.56 Aligned_cols=125 Identities=14% Similarity=0.028 Sum_probs=74.0
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCc-
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGN- 161 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~- 161 (387)
...|+||.||||+--... -+ .+.. -..+.||+.+=|..+. ..|.++|+||.+
T Consensus 5 ~k~lflDRDGtin~d~~~-yv------------~~~~-------------~~~~~~g~i~al~~l~~~gy~lVvvTNQsG 58 (181)
T COG0241 5 QKALFLDRDGTINIDKGD-YV------------DSLD-------------DFQFIPGVIPALLKLQRAGYKLVVVTNQSG 58 (181)
T ss_pred CcEEEEcCCCceecCCCc-cc------------CcHH-------------HhccCccHHHHHHHHHhCCCeEEEEECCCC
Confidence 568999999999875431 00 0000 1246799999999996 789999999943
Q ss_pred -----------HHHHHHHHHHcCCCCceeecccEEec----cCCC--CC----ceeccccccCCCCCeEEEeCChhhhhc
Q 036523 162 -----------RHYAEMIAKLLDPKCEYYISSRLITC----EDFK--DT----GKKNLDLVLGQERGVVIVDDTAEVWKD 220 (387)
Q Consensus 162 -----------~~YA~~i~~~LDP~~~~F~~~Ri~sr----d~~~--~~----~~KdL~~l~~~~~~vvIiDD~~~~w~~ 220 (387)
..+-..|.+.|--.|.-| .+.++.. +.|. .+ ...-++....|+...++|-|+..=-..
T Consensus 59 i~rgyf~~~~f~~~~~~m~~~l~~~gv~i-d~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~ 137 (181)
T COG0241 59 IGRGYFTEADFDKLHNKMLKILASQGVKI-DGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQA 137 (181)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHcCCcc-ceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHH
Confidence 233334666665555556 4444432 1132 21 222334444678899999999643332
Q ss_pred CCCCeeEeccccchhhh
Q 036523 221 HKENLILVGKYNYFKER 237 (387)
Q Consensus 221 ~~~N~I~I~~y~ff~~~ 237 (387)
....+|. |+.|..+.
T Consensus 138 a~n~gi~--~~~~~~~~ 152 (181)
T COG0241 138 AENAGIK--GVLVLTGI 152 (181)
T ss_pred HHHCCCC--ceEEEcCc
Confidence 2234444 66555443
No 161
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=86.26 E-value=1.1 Score=42.65 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=31.2
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCc
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGN 161 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~ 161 (387)
.+++|+||||++... .=|+..++|+++. +...+++.|+++
T Consensus 3 ~~~~D~DGtl~~~~~------------------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~ 43 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE------------------------------------RIPEAETFVHELQKRDIPYLFVTNNS 43 (249)
T ss_pred EEEEeCCCceEcCCe------------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 689999999997642 1168889999887 668899999744
No 162
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=85.28 E-value=1 Score=45.15 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=47.1
Q ss_pred CceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHc-C-----C-CCceeecccEEecc
Q 036523 130 GGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLL-D-----P-KCEYYISSRLITCE 188 (387)
Q Consensus 130 ~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~L-D-----P-~~~~F~~~Ri~srd 188 (387)
...-||.+-||+.++|+.+. ....+.|-|++...|++.+++.+ + + -..|| +-|++..
T Consensus 178 dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yF--D~IIt~a 242 (343)
T TIGR02244 178 NPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYF--DVVIVDA 242 (343)
T ss_pred CHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhC--cEEEeCC
Confidence 34568889999999999997 56999999999999999999997 6 3 35688 6677533
No 163
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=84.68 E-value=3.1 Score=40.80 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=41.1
Q ss_pred eEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHH
Q 036523 85 LQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRH 163 (387)
Q Consensus 85 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~ 163 (387)
..+++||||||++.... .-+-..+-|+.+. +...+++.|.-+..
T Consensus 2 KLIftDLDGTLLd~~~~-----------------------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ 46 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFN-----------------------------------SYGAARQALAALERRSIPLVLYSLRTRA 46 (302)
T ss_pred cEEEEeCCCCCcCCCCc-----------------------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 36899999999986421 0122456677776 56888888888888
Q ss_pred HHHHHHHHcCCCC
Q 036523 164 YAEMIAKLLDPKC 176 (387)
Q Consensus 164 YA~~i~~~LDP~~ 176 (387)
=...+.+.|..+.
T Consensus 47 ev~~l~~~Lgl~~ 59 (302)
T PRK12702 47 QLEHLCRQLRLEH 59 (302)
T ss_pred HHHHHHHHhCCCC
Confidence 7778888887654
No 164
>PLN03017 trehalose-phosphatase
Probab=84.55 E-value=1.6 Score=43.98 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=46.3
Q ss_pred hhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYIC 157 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~Iy 157 (387)
.+.+.+++.|+||+||||+--... |. ...+-|.+.+-|+++++.+.++|-
T Consensus 105 ~~~~~k~~llflD~DGTL~Piv~~----p~--------------------------~a~i~~~~~~aL~~La~~~~vaIv 154 (366)
T PLN03017 105 EASRGKQIVMFLDYDGTLSPIVDD----PD--------------------------KAFMSSKMRRTVKKLAKCFPTAIV 154 (366)
T ss_pred HHhcCCCeEEEEecCCcCcCCcCC----cc--------------------------cccCCHHHHHHHHHHhcCCcEEEE
Confidence 356788999999999999933210 10 012448888999999999999999
Q ss_pred cCCcHHHHHHHHH
Q 036523 158 TMGNRHYAEMIAK 170 (387)
Q Consensus 158 T~g~~~YA~~i~~ 170 (387)
|--...-+..+..
T Consensus 155 SGR~~~~l~~~~~ 167 (366)
T PLN03017 155 TGRCIDKVYNFVK 167 (366)
T ss_pred eCCCHHHHHHhhc
Confidence 8888777777643
No 165
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=84.34 E-value=2.2 Score=40.22 Aligned_cols=59 Identities=24% Similarity=0.156 Sum_probs=37.0
Q ss_pred ceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcc-cEEEEcCCcH
Q 036523 84 KLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMY-DIYICTMGNR 162 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~y-el~IyT~g~~ 162 (387)
++.++.||||||+.+... . -...|.+.+.++++.+.- .+++-|.-+.
T Consensus 1 ~~li~tDlDGTLl~~~~~----~----------------------------~~~~~~~~~~i~~~~~~gi~fv~aTGR~~ 48 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDG----D----------------------------NQALLRLNALLEDHRGEDSLLVYSTGRSP 48 (249)
T ss_pred CeEEEEcCCCcCcCCCCC----C----------------------------hHHHHHHHHHHHHhhccCceEEEEcCCCH
Confidence 467899999999975310 0 013477888888877555 5555555555
Q ss_pred HHHHHHHHHcCC
Q 036523 163 HYAEMIAKLLDP 174 (387)
Q Consensus 163 ~YA~~i~~~LDP 174 (387)
.=+.++++.+.+
T Consensus 49 ~~~~~~~~~~~~ 60 (249)
T TIGR01485 49 HSYKELQKQKPL 60 (249)
T ss_pred HHHHHHHhcCCC
Confidence 555556554443
No 166
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=84.08 E-value=0.82 Score=43.14 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEcCCc
Q 036523 82 QRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICTMGN 161 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT~g~ 161 (387)
.||..|+||+||||+-.... |. ..+.-|++.+.|+.|++.....|+=.+.
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~----p~--------------------------~~~~~~~~~~~L~~L~~~~~~~v~ivSG 50 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPD----PD--------------------------AAVVSDRLLTILQKLAARPHNAIWIISG 50 (244)
T ss_pred CCcEEEEEecCccccCCcCC----Cc--------------------------ccCCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence 36788999999999964321 11 1234589999999999877655444444
Q ss_pred HHHHHHHHHHcCCC
Q 036523 162 RHYAEMIAKLLDPK 175 (387)
Q Consensus 162 ~~YA~~i~~~LDP~ 175 (387)
|.+.+ +...+.+.
T Consensus 51 R~~~~-~~~~~~~~ 63 (244)
T TIGR00685 51 RKFLE-KWLGVKLP 63 (244)
T ss_pred CChhh-ccccCCCC
Confidence 44433 33444443
No 167
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=83.55 E-value=2.3 Score=38.27 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=42.3
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEE
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLI 185 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~ 185 (387)
..++|++.++|+.+. +.+.++|-|++...++..+++.++-+. +| +.++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~-~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AI-GTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eE-ecceE
Confidence 468999999999987 579999999999999999999988765 67 66555
No 168
>PLN02423 phosphomannomutase
Probab=83.54 E-value=2.2 Score=40.40 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=13.9
Q ss_pred CCceEEEEeCCCceeeee
Q 036523 82 QRKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~ 99 (387)
+.|..+++||||||+.+.
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 345566799999999764
No 169
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=83.15 E-value=0.5 Score=44.53 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=44.1
Q ss_pred CCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC
Q 036523 82 QRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG 160 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g 160 (387)
.+++.+|||+|+|++...... .. ..+....-+.++ -..|...+.. ..=||..+|++.+. ..++|++-|.=
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~----~~-~~~~~~~~~~~~-w~~wv~~~~~---~aip~a~~l~~~~~~~G~~V~~iT~R 140 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYY----AY-LIFGGESFSPED-WDEWVASGKA---PAIPGALELYNYARSRGVKVFFITGR 140 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHH----HH-HHHHTHHH-CCH-HHHHHHCTGG---EEETTHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCcEEEEECCcccccCHHHH----HH-HhhccCCCChHH-HHHHHhcccC---cccHHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999654210 00 000000000000 0000001111 34499999999998 67999999886
Q ss_pred cHHHHHHHHHHc
Q 036523 161 NRHYAEMIAKLL 172 (387)
Q Consensus 161 ~~~YA~~i~~~L 172 (387)
....-..-++.|
T Consensus 141 ~~~~r~~T~~nL 152 (229)
T PF03767_consen 141 PESQREATEKNL 152 (229)
T ss_dssp ETTCHHHHHHHH
T ss_pred CchhHHHHHHHH
Confidence 655444444444
No 170
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=82.71 E-value=5.2 Score=38.66 Aligned_cols=65 Identities=22% Similarity=0.145 Sum_probs=51.0
Q ss_pred chhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhccc--
Q 036523 76 SEIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYD-- 153 (387)
Q Consensus 76 ~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~ye-- 153 (387)
.......+|..++||.||||.+-... |.. ...=|++.+.|..|+..+.
T Consensus 10 ~~~~~~a~~~~~~lDyDGTl~~i~~~----p~~--------------------------a~~~~~l~~lL~~Las~~~~~ 59 (266)
T COG1877 10 LEPYLNARKRLLFLDYDGTLTEIVPH----PEA--------------------------AVPDDRLLSLLQDLASDPRNV 59 (266)
T ss_pred ccccccccceEEEEeccccccccccC----ccc--------------------------cCCCHHHHHHHHHHHhcCCCe
Confidence 44567789999999999999998753 211 1244889999999999998
Q ss_pred EEEEcCCcHHHHHHHHH
Q 036523 154 IYICTMGNRHYAEMIAK 170 (387)
Q Consensus 154 l~IyT~g~~~YA~~i~~ 170 (387)
++|.|--+..-.+..+.
T Consensus 60 v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 60 VAIISGRSLAELERLFG 76 (266)
T ss_pred EEEEeCCCHHHHHHhcC
Confidence 88888888888777776
No 171
>PLN02151 trehalose-phosphatase
Probab=82.42 E-value=2.1 Score=43.00 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=47.3
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEc
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICT 158 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT 158 (387)
+.+.+++.|+||+||||+--.. .|. -+..-|.+.+-|+.+++.+.++|-|
T Consensus 93 ~~~~~~~ll~lDyDGTL~PIv~----~P~--------------------------~A~~~~~~~~aL~~La~~~~vaIvS 142 (354)
T PLN02151 93 KSEGKQIVMFLDYDGTLSPIVD----DPD--------------------------RAFMSKKMRNTVRKLAKCFPTAIVS 142 (354)
T ss_pred hhcCCceEEEEecCccCCCCCC----Ccc--------------------------cccCCHHHHHHHHHHhcCCCEEEEE
Confidence 4567889999999999994332 111 1335699999999999999999998
Q ss_pred CCcHHHHHHHHH
Q 036523 159 MGNRHYAEMIAK 170 (387)
Q Consensus 159 ~g~~~YA~~i~~ 170 (387)
--...-.+.++.
T Consensus 143 GR~~~~l~~~~~ 154 (354)
T PLN02151 143 GRCREKVSSFVK 154 (354)
T ss_pred CCCHHHHHHHcC
Confidence 888777776664
No 172
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=82.10 E-value=4.6 Score=43.97 Aligned_cols=60 Identities=22% Similarity=0.128 Sum_probs=43.7
Q ss_pred CCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCC
Q 036523 82 QRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMG 160 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g 160 (387)
.++..+++||||||++.... .+ |...+-|+.+. +...++|.|.-
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~--i~---------------------------------~~t~eAL~~L~ekGI~~VIATGR 458 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTY--SY---------------------------------STALDALRLLKDKELPLVFCSAK 458 (694)
T ss_pred ceeeEEEEECcCCCcCCCCc--cC---------------------------------HHHHHHHHHHHHcCCeEEEEeCC
Confidence 45678999999999987421 00 12344566665 56889999999
Q ss_pred cHHHHHHHHHHcCCCC
Q 036523 161 NRHYAEMIAKLLDPKC 176 (387)
Q Consensus 161 ~~~YA~~i~~~LDP~~ 176 (387)
+...+..+++.|+.+.
T Consensus 459 s~~~i~~l~~~Lgl~~ 474 (694)
T PRK14502 459 TMGEQDLYRNELGIKD 474 (694)
T ss_pred CHHHHHHHHHHcCCCC
Confidence 9999999998887643
No 173
>PTZ00174 phosphomannomutase; Provisional
Probab=82.05 E-value=3 Score=39.37 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.6
Q ss_pred ceEEEEeCCCceeeee
Q 036523 84 KLQLVLDLDHTLLHAT 99 (387)
Q Consensus 84 kl~LVLDLD~TLihs~ 99 (387)
...+++||||||+++.
T Consensus 5 ~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR 20 (247)
T ss_pred CeEEEEECcCCCcCCC
Confidence 4578999999999875
No 174
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=81.94 E-value=1.4 Score=41.41 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.5
Q ss_pred ccHHHHHHHHh-hcccEEEEcCCc----HHHHHHHHHHc
Q 036523 139 PYIRSFLKEAC-KMYDIYICTMGN----RHYAEMIAKLL 172 (387)
Q Consensus 139 Pgl~eFL~~ls-~~yel~IyT~g~----~~YA~~i~~~L 172 (387)
|++.++|+.+. +.+.+.+-||++ ..+++.+.+.+
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~ 55 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLL 55 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 78899999997 458999998665 66777777744
No 175
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=81.00 E-value=0.8 Score=41.42 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=13.2
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.+++||||||+.|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999974
No 176
>PLN02580 trehalose-phosphatase
Probab=80.66 E-value=3 Score=42.44 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=49.1
Q ss_pred hhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYIC 157 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~Iy 157 (387)
...+.+++.|+||.||||.--.. .|. -+..-|++.+-|+.+++.+.++|-
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~----~Pd--------------------------~A~~s~~~~~aL~~La~~~~VAIV 162 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVD----DPD--------------------------RALMSDAMRSAVKNVAKYFPTAII 162 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCC----Ccc--------------------------cccCCHHHHHHHHHHhhCCCEEEE
Confidence 34567899999999999985432 121 134569999999999999999999
Q ss_pred cCCcHHHHHHHHH
Q 036523 158 TMGNRHYAEMIAK 170 (387)
Q Consensus 158 T~g~~~YA~~i~~ 170 (387)
|--.+.-.+..+.
T Consensus 163 SGR~~~~L~~~l~ 175 (384)
T PLN02580 163 SGRSRDKVYELVG 175 (384)
T ss_pred eCCCHHHHHHHhC
Confidence 9888888777664
No 177
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=79.72 E-value=2.9 Score=39.27 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=41.1
Q ss_pred EeeCccHHHHHHHHhh--cccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEec
Q 036523 135 VKLRPYIRSFLKEACK--MYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITC 187 (387)
Q Consensus 135 v~lRPgl~eFL~~ls~--~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~sr 187 (387)
+..-||+-+.++.+++ -||+.|-+-++.-+.+.+++..+-.- +| .+|+|.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d-~F--~~IfTN 134 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHD-LF--SEIFTN 134 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHH-HH--HHHhcC
Confidence 5677999999998884 38999999999999999999987754 67 466653
No 178
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=79.01 E-value=1.1 Score=39.79 Aligned_cols=43 Identities=23% Similarity=0.141 Sum_probs=26.5
Q ss_pred CCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeC
Q 036523 314 GPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVH 365 (387)
Q Consensus 314 ~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~ 365 (387)
.|. ...+...++.+|.. -.++|.-.....-++.|.+.|++.|-
T Consensus 142 KP~-p~~~~~~~~~~~~~--------~~~~l~igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 142 KPA-PDTFLRCAQLMGVQ--------PTQCVVFEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred CCC-hHHHHHHHHHcCCC--------HHHeEEEeccHhhHHHHHHCCCEEEe
Confidence 344 55677778888752 12333334446667888888887764
No 179
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.58 E-value=1.4 Score=45.65 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=71.5
Q ss_pred hhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEE
Q 036523 77 EIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIY 155 (387)
Q Consensus 77 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~ 155 (387)
..+.+..|.+||||||+||.--..- ++ ....++.... + +|..+ --+++|...+. +.+=+.
T Consensus 215 ~A~~g~~kK~LVLDLDNTLWGGVIG-----ed-Gv~GI~Ls~~------~--~G~~f-----k~fQ~~Ik~l~kqGVlLa 275 (574)
T COG3882 215 AAMSGKSKKALVLDLDNTLWGGVIG-----ED-GVDGIRLSNS------A--EGEAF-----KTFQNFIKGLKKQGVLLA 275 (574)
T ss_pred HHhhCcccceEEEecCCcccccccc-----cc-cccceeecCC------C--CchhH-----HHHHHHHHHHHhccEEEE
Confidence 3466788899999999999876531 11 0011110000 0 01101 11456666666 667799
Q ss_pred EEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCC----------CceeccccccCCCCCeEEEeCChhhhhcCCCCe
Q 036523 156 ICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKD----------TGKKNLDLVLGQERGVVIVDDTAEVWKDHKENL 225 (387)
Q Consensus 156 IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~----------~~~KdL~~l~~~~~~vvIiDD~~~~w~~~~~N~ 225 (387)
|.+-.+..=|..+...- | +-|+.-++... ...|--+.|+-+.+..|++||+|.--..-+.++
T Consensus 276 v~SKN~~~da~evF~kh-p-------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~ 347 (574)
T COG3882 276 VCSKNTEKDAKEVFRKH-P-------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKREL 347 (574)
T ss_pred EecCCchhhHHHHHhhC-C-------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcC
Confidence 99999988888776542 2 23553333221 111223345557888999999997654333333
Q ss_pred -eEeccc
Q 036523 226 -ILVGKY 231 (387)
Q Consensus 226 -I~I~~y 231 (387)
|.|.+|
T Consensus 348 ~v~Vi~~ 354 (574)
T COG3882 348 PVSVIEF 354 (574)
T ss_pred ceeeccC
Confidence 455544
No 180
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=78.31 E-value=3.4 Score=37.04 Aligned_cols=77 Identities=23% Similarity=0.119 Sum_probs=55.0
Q ss_pred EEEeeCccHHHHHHHHhhc-ccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCcee----ccccccCCCCC
Q 036523 133 LLVKLRPYIRSFLKEACKM-YDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKK----NLDLVLGQERG 207 (387)
Q Consensus 133 ~~v~lRPgl~eFL~~ls~~-yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~K----dL~~l~~~~~~ 207 (387)
..-.+||++.++|++|.+. +.++|.|..++..|..+++.++.... .++++.. ..+..| -++.+..+...
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~-----~v~a~~~-~kP~~k~~~~~i~~l~~~~~~ 197 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDS-----IVFARVI-GKPEPKIFLRIIKELQVKPGE 197 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSE-----EEEESHE-TTTHHHHHHHHHHHHTCTGGG
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccc-----ccccccc-ccccchhHHHHHHHHhcCCCE
Confidence 3457899999999999964 99999999999999999999987432 2233221 112222 23344445669
Q ss_pred eEEEeCCh
Q 036523 208 VVIVDDTA 215 (387)
Q Consensus 208 vvIiDD~~ 215 (387)
|+.|-|..
T Consensus 198 v~~vGDg~ 205 (215)
T PF00702_consen 198 VAMVGDGV 205 (215)
T ss_dssp EEEEESSG
T ss_pred EEEEccCH
Confidence 99999986
No 181
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=78.30 E-value=8.9 Score=37.20 Aligned_cols=82 Identities=12% Similarity=-0.028 Sum_probs=49.6
Q ss_pred eCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCC-----ceecc--cc-ccCCCCC
Q 036523 137 LRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDT-----GKKNL--DL-VLGQERG 207 (387)
Q Consensus 137 lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~-----~~KdL--~~-l~~~~~~ 207 (387)
.=|+..+|++.+. ..+.|++-|.-....-..=++.|--.|--. -++++=|+..... ..|.- .. +..+-+-
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~-~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrI 224 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT-WEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNI 224 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC-cceeeecCCCCCccchhHHHHHHHHHHHHHcCceE
Confidence 3489999999996 789999999888766666666665556211 2455556542211 11211 11 1123566
Q ss_pred eEEEeCChhhhh
Q 036523 208 VVIVDDTAEVWK 219 (387)
Q Consensus 208 vvIiDD~~~~w~ 219 (387)
+..|||+..-+.
T Consensus 225 v~~iGDq~sDl~ 236 (275)
T TIGR01680 225 VGIIGDQWNDLK 236 (275)
T ss_pred EEEECCCHHhcc
Confidence 778899865554
No 182
>PRK11587 putative phosphatase; Provisional
Probab=75.81 E-value=1.4 Score=40.47 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeeec
Q 036523 85 LQLVLDLDHTLLHATD 100 (387)
Q Consensus 85 l~LVLDLD~TLihs~~ 100 (387)
..++|||||||++|..
T Consensus 4 k~viFDlDGTL~Ds~~ 19 (218)
T PRK11587 4 KGFLFDLDGTLVDSLP 19 (218)
T ss_pred CEEEEcCCCCcCcCHH
Confidence 3789999999999973
No 183
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=75.75 E-value=5.7 Score=42.41 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=52.7
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDD 213 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD 213 (387)
-.+||++.++++++. ..++++|-|...+.+|+.+++.+.-+ +| ..+. +.....-++.+....+.|+.|.|
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~--~~~~-----p~~K~~~v~~l~~~~~~v~~VGD 474 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VR--AEVL-----PDDKAALIKELQEKGRVVAMVGD 474 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EE--ccCC-----hHHHHHHHHHHHHcCCEEEEEeC
Confidence 458999999999998 56999999999999999999998764 56 2221 11001112222234578999988
Q ss_pred Chhhh
Q 036523 214 TAEVW 218 (387)
Q Consensus 214 ~~~~w 218 (387)
...=-
T Consensus 475 g~nD~ 479 (562)
T TIGR01511 475 GINDA 479 (562)
T ss_pred CCccH
Confidence 86433
No 184
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=73.03 E-value=4.4 Score=45.06 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=60.0
Q ss_pred cCchhhhHHHHhhhcccceeeeeccCCC-------CCC-chHHHHHHHHHhCCeeeccc------------CCCceEEEE
Q 036523 286 WGDVRSFLAKIRRQILAGCTLFFNMGDV-------GPQ-EFPLLRRRAEELGAACTDVH------------DSSVTHVVS 345 (387)
Q Consensus 286 ~~DVr~il~~~R~~vl~G~~i~fSg~~~-------~~~-~~~~l~~la~~lGa~v~~~v------------~~~vTHlVa 345 (387)
.++-..+.+..+.+-|+|-++.+.+.+. +|. ..-.+|.-+.+.|+.-+-+. ..-.-||++
T Consensus 1045 s~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d 1124 (1176)
T KOG3548|consen 1045 SQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVD 1124 (1176)
T ss_pred cccccCccccCchhhccceeeEeeccccceeEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEec
Confidence 3444445555556667777777766543 122 13456766666665544333 112345666
Q ss_pred cCCCchHHHHHHhCCCeeeCHHHHHHHHHhcccC
Q 036523 346 TRQATEGRRLAEQHNNFLVHPRWIYAAYYLWSRQ 379 (387)
Q Consensus 346 ~~~~t~K~~~A~~~gi~IV~~~Wl~~c~~~~~r~ 379 (387)
...++.-++.|-..|+++|+++||.+|+-...+.
T Consensus 1125 ~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i 1158 (1176)
T KOG3548|consen 1125 GTFRDSVMKYADTLGAPVVSSEWVIQTIILGKAI 1158 (1176)
T ss_pred CccHHHHHHHHHHhCCCccChhHhheeeeccccC
Confidence 6667777888889999999999999998877665
No 185
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=72.73 E-value=1.9 Score=39.42 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=13.5
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++|||||||+++..
T Consensus 4 ~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 4 AIFFDLDDTLIDTSG 18 (221)
T ss_pred EEEEeCCCCCcCCCC
Confidence 789999999999874
No 186
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=72.52 E-value=1.4 Score=40.01 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=12.4
Q ss_pred EEEeCCCceeeeec
Q 036523 87 LVLDLDHTLLHATD 100 (387)
Q Consensus 87 LVLDLD~TLihs~~ 100 (387)
+||||||||+.|..
T Consensus 1 iiFDlDGTL~Ds~~ 14 (205)
T TIGR01454 1 VVFDLDGVLVDSFA 14 (205)
T ss_pred CeecCcCccccCHH
Confidence 58999999999974
No 187
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=72.33 E-value=1.6 Score=37.51 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=12.6
Q ss_pred EEEEeCCCceeeee
Q 036523 86 QLVLDLDHTLLHAT 99 (387)
Q Consensus 86 ~LVLDLD~TLihs~ 99 (387)
++++|+||||+++.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999986
No 188
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=71.96 E-value=2.3 Score=38.40 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=13.2
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++|||||||+.+..
T Consensus 2 ~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 2 LITFDAVGTLLALKE 16 (203)
T ss_pred eEEEecCCceeeeCC
Confidence 689999999999863
No 189
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=71.77 E-value=2.2 Score=39.03 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.3
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++|||||||+++..
T Consensus 3 ~iiFD~DGTL~ds~~ 17 (220)
T TIGR03351 3 LVVLDMAGTTVDEDG 17 (220)
T ss_pred EEEEecCCCeeccCc
Confidence 689999999999874
No 190
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=71.11 E-value=4.6 Score=42.81 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=61.1
Q ss_pred EEEeeCccHHHHHHHHh-hcc-cEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEE
Q 036523 133 LLVKLRPYIRSFLKEAC-KMY-DIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVI 210 (387)
Q Consensus 133 ~~v~lRPgl~eFL~~ls-~~y-el~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvI 210 (387)
....+|||+.+.|+++. +.+ .++|-|+..+.+|..+++.++.+. +| .++. +....+-++.+....+.|+.
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f--~~~~-----p~~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VH--AELL-----PEDKLEIVKELREKYGPVAM 430 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hh--hccC-----cHHHHHHHHHHHhcCCEEEE
Confidence 34579999999999998 568 999999999999999999998865 56 3332 11112223334445578999
Q ss_pred EeCChhhhhcCCCCeeEe
Q 036523 211 VDDTAEVWKDHKENLILV 228 (387)
Q Consensus 211 iDD~~~~w~~~~~N~I~I 228 (387)
|.|...=.+.-...++-|
T Consensus 431 vGDg~nD~~al~~A~vgi 448 (536)
T TIGR01512 431 VGDGINDAPALAAADVGI 448 (536)
T ss_pred EeCCHHHHHHHHhCCEEE
Confidence 999975443323344433
No 191
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=70.80 E-value=2.1 Score=37.79 Aligned_cols=15 Identities=13% Similarity=0.512 Sum_probs=13.4
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++||+||||+.+..
T Consensus 3 ~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 3 AVIFDMDGVIVDTAP 17 (185)
T ss_pred eEEEcCCCcccCChH
Confidence 689999999999974
No 192
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=70.65 E-value=2.2 Score=41.08 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.6
Q ss_pred ceEEEEeCCCceeeeec
Q 036523 84 KLQLVLDLDHTLLHATD 100 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~ 100 (387)
...++|||||||+++..
T Consensus 13 ~k~viFDlDGTL~Ds~~ 29 (272)
T PRK13223 13 PRLVMFDLDGTLVDSVP 29 (272)
T ss_pred CCEEEEcCCCccccCHH
Confidence 34899999999999964
No 193
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=70.46 E-value=4 Score=43.48 Aligned_cols=77 Identities=21% Similarity=0.122 Sum_probs=55.8
Q ss_pred EEeeCccHHHHHHHHh-hc-ccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEE
Q 036523 134 LVKLRPYIRSFLKEAC-KM-YDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIV 211 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~-yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIi 211 (387)
...+|||+.+.|+++. .. +.++|-|...+.+|.++++.++-+. +| .++.. ++ ..+-++.+......|+.|
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f--~~~~p-~~----K~~~v~~l~~~~~~v~~v 453 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VH--AELLP-ED----KLAIVKELQEEGGVVAMV 453 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-ee--ccCCH-HH----HHHHHHHHHHcCCEEEEE
Confidence 4579999999999997 46 9999999999999999999998865 67 33321 11 112233333345689999
Q ss_pred eCChhhh
Q 036523 212 DDTAEVW 218 (387)
Q Consensus 212 DD~~~~w 218 (387)
.|...=-
T Consensus 454 GDg~nD~ 460 (556)
T TIGR01525 454 GDGINDA 460 (556)
T ss_pred ECChhHH
Confidence 9988533
No 194
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=70.18 E-value=2.2 Score=40.32 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=14.0
Q ss_pred eEEEEeCCCceeeeec
Q 036523 85 LQLVLDLDHTLLHATD 100 (387)
Q Consensus 85 l~LVLDLD~TLihs~~ 100 (387)
..++|||||||++|..
T Consensus 23 k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP 38 (248)
T ss_pred CEEEEcCCCccCcCHH
Confidence 3699999999999974
No 195
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=70.06 E-value=2 Score=37.94 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=13.0
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++||+||||+.+..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999974
No 196
>PRK11590 hypothetical protein; Provisional
Probab=69.31 E-value=6.8 Score=35.95 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=34.7
Q ss_pred EeeCccHHHHH-HHHh-hcccEEEEcCCcHHHHHHHHHHcC
Q 036523 135 VKLRPYIRSFL-KEAC-KMYDIYICTMGNRHYAEMIAKLLD 173 (387)
Q Consensus 135 v~lRPgl~eFL-~~ls-~~yel~IyT~g~~~YA~~i~~~LD 173 (387)
+.++||+.+.| +.+. ..+.++|-|++.+.|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 56799999999 5676 689999999999999999999866
No 197
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=69.25 E-value=2.5 Score=40.21 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeeee
Q 036523 85 LQLVLDLDHTLLHAT 99 (387)
Q Consensus 85 l~LVLDLD~TLihs~ 99 (387)
..++|||||||+++.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 479999999999985
No 198
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=69.03 E-value=1.9 Score=39.13 Aligned_cols=43 Identities=19% Similarity=0.007 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHH
Q 036523 318 FPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRW 368 (387)
Q Consensus 318 ~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 368 (387)
...+.++++.+|.. ++-+-+ . .....-+..|.+.|++.|...|
T Consensus 144 p~~~~~~~~~~~~~------~~~~~~-i-gDs~~d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 144 PDPLLLAAERLGVA------PQQMVY-V-GDSRVDIQAARAAGCPSVLLTY 186 (213)
T ss_pred hHHHHHHHHHcCCC------hhHeEE-e-CCCHHHHHHHHHCCCeEEEEcc
Confidence 44566677777642 112222 2 2234556777788888776655
No 199
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=68.95 E-value=2.3 Score=37.37 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=12.5
Q ss_pred EEEeCCCceeeeec
Q 036523 87 LVLDLDHTLLHATD 100 (387)
Q Consensus 87 LVLDLD~TLihs~~ 100 (387)
++|||||||+.+..
T Consensus 2 viFD~DGTL~D~~~ 15 (175)
T TIGR01493 2 MVFDVYGTLVDVHG 15 (175)
T ss_pred eEEecCCcCcccHH
Confidence 79999999999873
No 200
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=68.79 E-value=2.7 Score=39.53 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeeee
Q 036523 85 LQLVLDLDHTLLHAT 99 (387)
Q Consensus 85 l~LVLDLD~TLihs~ 99 (387)
..++||+||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 368999999999985
No 201
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=67.43 E-value=11 Score=34.49 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=35.8
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLD 173 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LD 173 (387)
+++|||.++|.+.+. +.-.++|-++|+..|..++...|-
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 789999999999998 668999999999999999998764
No 202
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=67.00 E-value=7.8 Score=35.80 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=33.8
Q ss_pred EeeCccHHHHHH-HHh-hcccEEEEcCCcHHHHHHHHHHc
Q 036523 135 VKLRPYIRSFLK-EAC-KMYDIYICTMGNRHYAEMIAKLL 172 (387)
Q Consensus 135 v~lRPgl~eFL~-~ls-~~yel~IyT~g~~~YA~~i~~~L 172 (387)
+.++||+.+.|+ .+. +.+.++|-|++.+.|++++++..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 467999999996 777 69999999999999999999763
No 203
>PLN02382 probable sucrose-phosphatase
Probab=66.95 E-value=3.1 Score=42.68 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.2
Q ss_pred hhhhcCCceEEEEeCCCceeee
Q 036523 77 EIVFGQRKLQLVLDLDHTLLHA 98 (387)
Q Consensus 77 ~~l~~~~kl~LVLDLD~TLihs 98 (387)
.+|-...++.|+.||||||+..
T Consensus 2 ~~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 2 DRLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CcccCCCCEEEEEcCCCcCcCC
Confidence 4677888999999999999976
No 204
>PRK11590 hypothetical protein; Provisional
Probab=66.75 E-value=3.2 Score=38.16 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.5
Q ss_pred CceEEEEeCCCceee
Q 036523 83 RKLQLVLDLDHTLLH 97 (387)
Q Consensus 83 ~kl~LVLDLD~TLih 97 (387)
.+..+++||||||++
T Consensus 5 ~~k~~iFD~DGTL~~ 19 (211)
T PRK11590 5 ERRVVFFDLDGTLHQ 19 (211)
T ss_pred cceEEEEecCCCCcc
Confidence 445899999999993
No 205
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=66.71 E-value=2.7 Score=39.35 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.4
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++|||||||+++..
T Consensus 12 ~iiFDlDGTL~D~~~ 26 (238)
T PRK10748 12 ALTFDLDDTLYDNRP 26 (238)
T ss_pred eEEEcCcccccCChH
Confidence 799999999999863
No 206
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=65.26 E-value=3 Score=36.50 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=13.0
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.+++||||||+.+..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999964
No 207
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=64.97 E-value=3.2 Score=35.47 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=12.2
Q ss_pred EEEeCCCceeeeec
Q 036523 87 LVLDLDHTLLHATD 100 (387)
Q Consensus 87 LVLDLD~TLihs~~ 100 (387)
++||+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999999863
No 208
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=64.46 E-value=3.6 Score=38.25 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.1
Q ss_pred eEEEEeCCCceeeee
Q 036523 85 LQLVLDLDHTLLHAT 99 (387)
Q Consensus 85 l~LVLDLD~TLihs~ 99 (387)
..++|||||||+++.
T Consensus 11 k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 11 DTVLLDMDGTLLDLA 25 (224)
T ss_pred CEEEEcCCCCccchh
Confidence 479999999999964
No 209
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=63.81 E-value=20 Score=33.87 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=25.6
Q ss_pred hhcccEEEEcCCcHHHHHHHHHHcCCCCcee
Q 036523 149 CKMYDIYICTMGNRHYAEMIAKLLDPKCEYY 179 (387)
Q Consensus 149 s~~yel~IyT~g~~~YA~~i~~~LDP~~~~F 179 (387)
-..|+|+..|+-++.=-...-+.|+-.|..|
T Consensus 37 d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~ 67 (274)
T COG3769 37 DAGVPVILCSSKTRAEMLYLQKSLGVQGLPL 67 (274)
T ss_pred HcCCeEEEeccchHHHHHHHHHhcCCCCCce
Confidence 3789999999988887777888898887655
No 210
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=63.64 E-value=3.6 Score=37.42 Aligned_cols=44 Identities=5% Similarity=-0.141 Sum_probs=26.2
Q ss_pred hHHHHHHHHHh-CCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHH
Q 036523 318 FPLLRRRAEEL-GAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRW 368 (387)
Q Consensus 318 ~~~l~~la~~l-Ga~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 368 (387)
...+...++.+ |... + ..|+..+..+.-+..|++.|++.|...|
T Consensus 155 ~~~~~~~~~~~~~~~~------~-~~v~igD~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 155 KEIFNYALERMPKFSK------E-EVLMIGDSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred HHHHHHHHHHhcCCCc------h-heEEECCCcHHHHHHHHHCCCcEEEECC
Confidence 44556667777 4332 1 2333433333578888899987776666
No 211
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=63.54 E-value=12 Score=41.17 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=44.7
Q ss_pred cCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh--cccEEEEc
Q 036523 81 GQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK--MYDIYICT 158 (387)
Q Consensus 81 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~--~yel~IyT 158 (387)
..++..+++|+||||+..... +.. ...-|.+.+.|+.|++ ...++|-|
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~~----~~~--------------------------~~~~~~~~~~L~~L~~d~g~~V~ivS 538 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAPD----PEL--------------------------AVPDKELRDLLRRLAADPNTDVAIIS 538 (726)
T ss_pred hccceEEEEecCccccCCCCC----ccc--------------------------CCCCHHHHHHHHHHHcCCCCeEEEEe
Confidence 466789999999999964321 110 1244788899999986 78899999
Q ss_pred CCcHHHHHHHHHHc
Q 036523 159 MGNRHYAEMIAKLL 172 (387)
Q Consensus 159 ~g~~~YA~~i~~~L 172 (387)
--+.....+.+..+
T Consensus 539 GR~~~~l~~~~~~~ 552 (726)
T PRK14501 539 GRDRDTLERWFGDL 552 (726)
T ss_pred CCCHHHHHHHhCCC
Confidence 88888777666543
No 212
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=63.41 E-value=3.5 Score=37.02 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.3
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++||+||||+++..
T Consensus 3 ~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 3 ALVFDVYGTLFDVHS 17 (198)
T ss_pred EEEEeCCCcCccHHH
Confidence 689999999999873
No 213
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=63.25 E-value=4.3 Score=39.38 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.7
Q ss_pred eEEEEeCCCceeeee
Q 036523 85 LQLVLDLDHTLLHAT 99 (387)
Q Consensus 85 l~LVLDLD~TLihs~ 99 (387)
..+||||||||++|.
T Consensus 41 k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 41 EALLFDCDGVLVETE 55 (286)
T ss_pred cEEEEeCceeEEccc
Confidence 478999999999997
No 214
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=63.12 E-value=13 Score=33.02 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=41.1
Q ss_pred EEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHH
Q 036523 86 QLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHY 164 (387)
Q Consensus 86 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~Y 164 (387)
++|.|+||||--|...-.+ +.+-+.. +.+||+.++...+. +.|.+.=-|+-.-..
T Consensus 1 VVvsDIDGTiT~SD~~G~i---------------------~~~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~q 56 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHI---------------------LPILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQ 56 (157)
T ss_pred CEEEeccCCcCccchhhhh---------------------hhccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHH
Confidence 4689999999988531100 0011112 68899999999998 678887777766555
Q ss_pred HHHHHHHc
Q 036523 165 AEMIAKLL 172 (387)
Q Consensus 165 A~~i~~~L 172 (387)
|...-+.|
T Consensus 57 a~~Tr~~L 64 (157)
T PF08235_consen 57 ANRTRSWL 64 (157)
T ss_pred HHHHHHHH
Confidence 55544443
No 215
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=62.68 E-value=3.8 Score=37.38 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=12.9
Q ss_pred EEEEeCCCceeeee
Q 036523 86 QLVLDLDHTLLHAT 99 (387)
Q Consensus 86 ~LVLDLD~TLihs~ 99 (387)
.++||+||||+++.
T Consensus 8 ~iiFD~DGTL~d~~ 21 (226)
T PRK13222 8 AVAFDLDGTLVDSA 21 (226)
T ss_pred EEEEcCCcccccCH
Confidence 78999999999986
No 216
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=62.29 E-value=5.6 Score=37.41 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=69.2
Q ss_pred ceEEEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcC-CCCceeecccEEeccC--CC------CCceecccc
Q 036523 131 GLLLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLD-PKCEYYISSRLITCED--FK------DTGKKNLDL 200 (387)
Q Consensus 131 ~~~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LD-P~~~~F~~~Ri~srd~--~~------~~~~KdL~~ 200 (387)
..-.+++-||+.++++.|. ..-.+.++|.+++..++..++.+- +-. .| ++-++ -++ +. ..|.+-.++
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~-~f-~~~v~-~d~~~v~~gKP~Pdi~l~A~~~ 163 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFK-NF-SHVVL-GDDPEVKNGKPDPDIYLKAAKR 163 (222)
T ss_pred hccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHH-hc-CCCee-cCCccccCCCCCchHHHHHHHh
Confidence 3445788999999999998 678999999998888887776654 443 57 55554 222 11 235667777
Q ss_pred ccCCC-CCeEEEeCChhhhhcCC---CCeeEeccc
Q 036523 201 VLGQE-RGVVIVDDTAEVWKDHK---ENLILVGKY 231 (387)
Q Consensus 201 l~~~~-~~vvIiDD~~~~w~~~~---~N~I~I~~y 231 (387)
++... +.+|+++|++....... -+.|-|..+
T Consensus 164 l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 164 LGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred cCCCCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 77666 99999999998665332 355666654
No 217
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=62.14 E-value=4.5 Score=36.76 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=26.5
Q ss_pred CCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHH
Q 036523 314 GPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRW 368 (387)
Q Consensus 314 ~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 368 (387)
.|. ...+...++.+|.. ++-+=+| .....-+..|.+.|++.|...+
T Consensus 152 KP~-p~~~~~~~~~~g~~------~~~~l~i--~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 152 KPD-PRIYQLMLERLGVA------PEECVFL--DDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred CCC-HHHHHHHHHHcCCC------HHHeEEE--cCCHHHHHHHHHcCCEEEEECC
Confidence 444 44556667777632 2222233 3344557888888987776544
No 218
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=61.53 E-value=3.9 Score=37.43 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.8
Q ss_pred eEEEEeCCCceeeeec
Q 036523 85 LQLVLDLDHTLLHATD 100 (387)
Q Consensus 85 l~LVLDLD~TLihs~~ 100 (387)
..++||+||||+.+..
T Consensus 5 ~~viFD~DGTL~d~~~ 20 (221)
T PRK10563 5 EAVFFDCDGTLVDSEV 20 (221)
T ss_pred CEEEECCCCCCCCChH
Confidence 4789999999999863
No 219
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=61.08 E-value=4.5 Score=36.10 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=12.7
Q ss_pred EEEEeCCCceeeee
Q 036523 86 QLVLDLDHTLLHAT 99 (387)
Q Consensus 86 ~LVLDLD~TLihs~ 99 (387)
.+|+||||||+.+.
T Consensus 6 ~viFD~DGTLid~~ 19 (201)
T TIGR01491 6 LIIFDLDGTLTDVM 19 (201)
T ss_pred EEEEeCCCCCcCCc
Confidence 69999999999865
No 220
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=60.80 E-value=4.8 Score=36.95 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=14.8
Q ss_pred CceEEEEeCCCceeeeec
Q 036523 83 RKLQLVLDLDHTLLHATD 100 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~~ 100 (387)
+-..++||+||||+++..
T Consensus 6 ~~k~iiFD~DGTL~d~~~ 23 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEP 23 (222)
T ss_pred cCcEEEEcCCCCCCcCHH
Confidence 345789999999999863
No 221
>PRK09449 dUMP phosphatase; Provisional
Probab=59.45 E-value=4.4 Score=37.09 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=26.8
Q ss_pred CCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHH
Q 036523 314 GPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPR 367 (387)
Q Consensus 314 ~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~ 367 (387)
.|. ...+...++.+|.. +.-..++..+....-+..|++.|++.|...
T Consensus 150 KP~-p~~~~~~~~~~~~~------~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 150 KPD-VAIFDYALEQMGNP------DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCC-HHHHHHHHHHcCCC------CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 444 45566677777632 112234444433346788888888766543
No 222
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=58.64 E-value=5 Score=38.09 Aligned_cols=81 Identities=15% Similarity=0.034 Sum_probs=59.6
Q ss_pred EEEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCC-----CCceeccccccCCCC
Q 036523 133 LLVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFK-----DTGKKNLDLVLGQER 206 (387)
Q Consensus 133 ~~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~-----~~~~KdL~~l~~~~~ 206 (387)
.|..+.|-+ ++|+++. +.+.|.|.||..+.|= .++..++-. .|| ..-+.|.+... ..|.+-|++++-.++
T Consensus 111 ~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~f-D~vv~S~e~g~~KPDp~If~~al~~l~v~Pe 186 (237)
T KOG3085|consen 111 AWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYF-DFVVESCEVGLEKPDPRIFQLALERLGVKPE 186 (237)
T ss_pred CceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-Hhh-hhhhhhhhhccCCCChHHHHHHHHHhCCChH
Confidence 344455555 9999998 7789999999999887 666666665 488 55555543321 235677888888899
Q ss_pred CeEEEeCChhh
Q 036523 207 GVVIVDDTAEV 217 (387)
Q Consensus 207 ~vvIiDD~~~~ 217 (387)
.+|.|||+...
T Consensus 187 e~vhIgD~l~n 197 (237)
T KOG3085|consen 187 ECVHIGDLLEN 197 (237)
T ss_pred HeEEecCcccc
Confidence 99999999876
No 223
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=58.35 E-value=8.6 Score=33.90 Aligned_cols=40 Identities=20% Similarity=0.123 Sum_probs=34.2
Q ss_pred eCccHH----HHHHHH-hhcccEEEEcCCcHHHHHHHHHHcCCCC
Q 036523 137 LRPYIR----SFLKEA-CKMYDIYICTMGNRHYAEMIAKLLDPKC 176 (387)
Q Consensus 137 lRPgl~----eFL~~l-s~~yel~IyT~g~~~YA~~i~~~LDP~~ 176 (387)
++|++. +||+.+ +..++++|-|++.+.++..+++.+.-..
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 456666 999998 4899999999999999999999877554
No 224
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=56.11 E-value=5 Score=41.59 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=14.0
Q ss_pred eEEEEeCCCceeeeec
Q 036523 85 LQLVLDLDHTLLHATD 100 (387)
Q Consensus 85 l~LVLDLD~TLihs~~ 100 (387)
..++|||||||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4789999999999974
No 225
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=55.11 E-value=19 Score=36.57 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=43.0
Q ss_pred hcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh-hcccEEEEc
Q 036523 80 FGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC-KMYDIYICT 158 (387)
Q Consensus 80 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls-~~yel~IyT 158 (387)
.+......-||||+|||.+.... + |......+.+..+++... |+++. +.|-++|+|
T Consensus 71 v~~~~K~i~FD~dgtlI~t~sg~--------v--------------f~~~~~dw~~l~~~vp~K-lktl~~~g~~l~ift 127 (422)
T KOG2134|consen 71 VNGGSKIIMFDYDGTLIDTKSGK--------V--------------FPKGSMDWRILFPEVPSK-LKTLYQDGIKLFIFT 127 (422)
T ss_pred cCCCcceEEEecCCceeecCCcc--------e--------------eeccCccceeeccccchh-hhhhccCCeEEEEEe
Confidence 34455678999999999987421 1 111122233334444444 55554 889999999
Q ss_pred CCc------------HHHHHHHHHHcCC
Q 036523 159 MGN------------RHYAEMIAKLLDP 174 (387)
Q Consensus 159 ~g~------------~~YA~~i~~~LDP 174 (387)
+.. +.-+++|+..++-
T Consensus 128 nq~~i~r~~~~~~~f~~Ki~~i~anl~v 155 (422)
T KOG2134|consen 128 NQNGIARGKLELEEFKKKIKAIVANLGV 155 (422)
T ss_pred cccccccCcchHHHHHHHHHHHHHhcCC
Confidence 875 3445556555553
No 226
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=53.83 E-value=6.8 Score=35.24 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=10.7
Q ss_pred EEEEeCCCceee
Q 036523 86 QLVLDLDHTLLH 97 (387)
Q Consensus 86 ~LVLDLD~TLih 97 (387)
.+++||||||+.
T Consensus 3 ~v~FD~DGTL~~ 14 (205)
T PRK13582 3 IVCLDLEGVLVP 14 (205)
T ss_pred EEEEeCCCCChh
Confidence 689999999993
No 227
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=52.34 E-value=59 Score=29.79 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=59.7
Q ss_pred hhhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHH------HHHHHhh
Q 036523 77 EIVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRS------FLKEACK 150 (387)
Q Consensus 77 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~e------FL~~ls~ 150 (387)
.+|-.++..++-+|+|.|++.|+.- |- + |. -+.-||-+. |.+.+.+
T Consensus 56 ~SLeG~~Pi~VsFDIDDTvLFsSp~----------F~-------------~--Gk---~~~sPgs~DyLknq~FW~~vn~ 107 (237)
T COG3700 56 NSLEGRPPIAVSFDIDDTVLFSSPG----------FW-------------R--GK---KYFSPGSEDYLKNQVFWEKVNN 107 (237)
T ss_pred hhhcCCCCeeEeeccCCeeEecccc----------cc-------------c--Cc---cccCCChHHhhcCHHHHHHHhc
Confidence 3577788899999999999999731 10 0 00 012344443 5556665
Q ss_pred cccEEEEcCCcHHHHHHHHHHcCCCC--ceeecccEEeccCCCCCceecccccc--CCCCCeEEEeCCh
Q 036523 151 MYDIYICTMGNRHYAEMIAKLLDPKC--EYYISSRLITCEDFKDTGKKNLDLVL--GQERGVVIVDDTA 215 (387)
Q Consensus 151 ~yel~IyT~g~~~YA~~i~~~LDP~~--~~F~~~Ri~srd~~~~~~~KdL~~l~--~~~~~vvIiDD~~ 215 (387)
..+=+ .=.++||.+++++--..| .||..+|- +.. .....|.|..-+ ..+.-|++.-|++
T Consensus 108 g~D~~---SIPKevA~qLI~MHq~RGD~i~FvTGRt--~gk-~d~vsk~Lak~F~i~~m~pv~f~Gdk~ 170 (237)
T COG3700 108 GWDEF---SIPKEVARQLIDMHQRRGDAIYFVTGRT--PGK-TDTVSKTLAKNFHITNMNPVIFAGDKP 170 (237)
T ss_pred CCccc---cchHHHHHHHHHHHHhcCCeEEEEecCC--CCc-ccccchhHHhhcccCCCcceeeccCCC
Confidence 54422 126899999998876544 35512221 111 112235554433 3466777778877
No 228
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=51.18 E-value=22 Score=33.67 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=21.6
Q ss_pred ccHHHHHH-HHhhcccEEEEcCCcHHHHHHHHHHc
Q 036523 139 PYIRSFLK-EACKMYDIYICTMGNRHYAEMIAKLL 172 (387)
Q Consensus 139 Pgl~eFL~-~ls~~yel~IyT~g~~~YA~~i~~~L 172 (387)
.-+.++|+ ......-+++-|--+..-+..+++..
T Consensus 22 ~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~ 56 (247)
T PF05116_consen 22 ARLEELLEQQARPEILFVYVTGRSLESVLRLLREY 56 (247)
T ss_dssp HHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhC
Confidence 44567777 44466667777777777777777754
No 229
>PLN02940 riboflavin kinase
Probab=48.79 E-value=8.5 Score=39.03 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=13.7
Q ss_pred eEEEEeCCCceeeeec
Q 036523 85 LQLVLDLDHTLLHATD 100 (387)
Q Consensus 85 l~LVLDLD~TLihs~~ 100 (387)
..++|||||||+.+..
T Consensus 12 k~VIFDlDGTLvDt~~ 27 (382)
T PLN02940 12 SHVILDLDGTLLNTDG 27 (382)
T ss_pred CEEEECCcCcCCcCHH
Confidence 3589999999999864
No 230
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=47.55 E-value=9.3 Score=35.14 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.6
Q ss_pred EEEEeCCCceeeee
Q 036523 86 QLVLDLDHTLLHAT 99 (387)
Q Consensus 86 ~LVLDLD~TLihs~ 99 (387)
..+||||+|||...
T Consensus 3 la~FDlD~TLi~~~ 16 (203)
T TIGR02137 3 IACLDLEGVLVPEI 16 (203)
T ss_pred EEEEeCCcccHHHH
Confidence 37999999999653
No 231
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=47.17 E-value=32 Score=32.90 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.8
Q ss_pred EEeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHc
Q 036523 134 LVKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLL 172 (387)
Q Consensus 134 ~v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~L 172 (387)
-+.+|.|+.+|++.|. ..--+.||+||--+-.+.+++.-
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 4789999999999999 45789999999999999999886
No 232
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=46.56 E-value=10 Score=22.46 Aligned_cols=19 Identities=16% Similarity=0.530 Sum_probs=10.9
Q ss_pred cCCCceeec-cccccccccc
Q 036523 28 SCSHPQTFN-GVCLSCAQTV 46 (387)
Q Consensus 28 ~C~H~~~~~-~~C~~Cg~~~ 46 (387)
.|.+.+.-. ..|..||.++
T Consensus 4 ~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 4 NCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred ccCCCCCCcCcchhhhCCcC
Confidence 355555533 3677777653
No 233
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=44.48 E-value=20 Score=40.35 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=40.3
Q ss_pred hcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHh--hcccEEEE
Q 036523 80 FGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEAC--KMYDIYIC 157 (387)
Q Consensus 80 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls--~~yel~Iy 157 (387)
.+.++..|+||+||||+..... . ...-|++.+-|++|+ +.-.++|-
T Consensus 592 ~~~~~rlI~LDyDGTLlp~~~~------~--------------------------~~p~~~~~~~L~~L~~d~g~~VaIv 639 (854)
T PLN02205 592 KRTTTRAILLDYDGTLMPQASI------D--------------------------KSPSSKSIDILNTLCRDKNNMVFIV 639 (854)
T ss_pred HhhcCeEEEEecCCcccCCccc------c--------------------------CCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4557788999999999954310 0 113378889999985 45667777
Q ss_pred cCCcHHHHHHHHHHc
Q 036523 158 TMGNRHYAEMIAKLL 172 (387)
Q Consensus 158 T~g~~~YA~~i~~~L 172 (387)
|--.+.-.+....-+
T Consensus 640 SGR~~~~L~~~f~~~ 654 (854)
T PLN02205 640 SARSRKTLADWFSPC 654 (854)
T ss_pred eCCCHHHHHHHhCCC
Confidence 666666555555443
No 234
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=43.30 E-value=33 Score=31.86 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=22.3
Q ss_pred eeCccHHHHHHHHhhccc--EEEEcCCcHHHHHHH
Q 036523 136 KLRPYIRSFLKEACKMYD--IYICTMGNRHYAEMI 168 (387)
Q Consensus 136 ~lRPgl~eFL~~ls~~ye--l~IyT~g~~~YA~~i 168 (387)
+.-|++.+.|+.|+.... ++|-|--...-.+..
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 466999999999997776 888887777764333
No 235
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.48 E-value=39 Score=26.69 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.6
Q ss_pred CCceEEEEeCCCceeeee
Q 036523 82 QRKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~ 99 (387)
....+|||+=|||.|.+.
T Consensus 37 ~~~~~lvLeeDGT~Vd~E 54 (81)
T cd06537 37 SGVLTLVLEEDGTAVDSE 54 (81)
T ss_pred CCceEEEEecCCCEEccH
Confidence 456999999999999875
No 236
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=42.36 E-value=13 Score=33.45 Aligned_cols=46 Identities=7% Similarity=-0.016 Sum_probs=27.3
Q ss_pred CCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHH
Q 036523 314 GPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRW 368 (387)
Q Consensus 314 ~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 368 (387)
.|. .......++.+|. +++-+.+|- + ....+..|++.|++.|...+
T Consensus 141 KP~-p~~~~~~~~~~~~------~p~~~l~vg-D-~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 141 KPE-ARIYQHVLQAEGF------SAADAVFFD-D-NADNIEAANALGITSILVTD 186 (199)
T ss_pred CCC-HHHHHHHHHHcCC------ChhHeEEeC-C-CHHHHHHHHHcCCEEEEecC
Confidence 444 4455666777764 323333333 3 33458888899988776554
No 237
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=42.13 E-value=12 Score=34.84 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=11.1
Q ss_pred EEEeCCCceeeee
Q 036523 87 LVLDLDHTLLHAT 99 (387)
Q Consensus 87 LVLDLD~TLihs~ 99 (387)
++.||||||++..
T Consensus 2 i~~DlDgTLl~~~ 14 (236)
T TIGR02471 2 IITDLDNTLLGDD 14 (236)
T ss_pred eEEeccccccCCH
Confidence 6889999999843
No 238
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=41.44 E-value=50 Score=37.64 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=48.9
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh--cccEEE
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK--MYDIYI 156 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~--~yel~I 156 (387)
..+.++..|+||.||||+--... |..+... + ..+.+..-|++.+.|+.|+. ...|+|
T Consensus 586 y~~a~~RLlfLDyDGTLap~~~~----P~~~~~~---------------~--~~~~a~p~p~l~~~L~~L~~dp~n~VaI 644 (934)
T PLN03064 586 YLQSNNRLLILGFNATLTEPVDT----PGRRGDQ---------------I--KEMELRLHPELKEPLRALCSDPKTTIVV 644 (934)
T ss_pred HHhccceEEEEecCceeccCCCC----ccccccc---------------c--cccccCCCHHHHHHHHHHHhCCCCeEEE
Confidence 34567889999999999865432 2110000 0 01124456889999999995 477999
Q ss_pred EcCCcHHHHHHHHHHc
Q 036523 157 CTMGNRHYAEMIAKLL 172 (387)
Q Consensus 157 yT~g~~~YA~~i~~~L 172 (387)
-|--.++-.+..+..+
T Consensus 645 VSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 645 LSGSDRSVLDENFGEF 660 (934)
T ss_pred EeCCCHHHHHHHhCCC
Confidence 9988888888777554
No 239
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=41.36 E-value=54 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.0
Q ss_pred CceEEEEeCCCceeeee
Q 036523 83 RKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~ 99 (387)
...+|||+=|||.|.+.
T Consensus 41 ~~~~lvL~eDGT~VddE 57 (80)
T cd06536 41 APITLVLAEDGTIVEDE 57 (80)
T ss_pred CceEEEEecCCcEEccH
Confidence 56899999999999875
No 240
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=40.60 E-value=48 Score=37.13 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=45.0
Q ss_pred hcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhh--cccEEEE
Q 036523 80 FGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACK--MYDIYIC 157 (387)
Q Consensus 80 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~--~yel~Iy 157 (387)
.+.++..|+||.||||+.-.... ..| .-+..-|++.+-|+.|++ .-.++|-
T Consensus 503 ~~a~~rll~LDyDGTL~~~~~~~-~~p--------------------------~~a~p~~~l~~~L~~L~~d~~~~V~Iv 555 (797)
T PLN03063 503 SKSNNRLLILGFYGTLTEPRNSQ-IKE--------------------------MDLGLHPELKETLKALCSDPKTTVVVL 555 (797)
T ss_pred HhccCeEEEEecCccccCCCCCc-ccc--------------------------ccCCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 35678899999999999432110 001 113456899999999985 4678888
Q ss_pred cCCcHHHHHHHHHH
Q 036523 158 TMGNRHYAEMIAKL 171 (387)
Q Consensus 158 T~g~~~YA~~i~~~ 171 (387)
|--+++-.++.+..
T Consensus 556 SGR~~~~L~~~~~~ 569 (797)
T PLN03063 556 SRSGKDILDKNFGE 569 (797)
T ss_pred eCCCHHHHHHHhCC
Confidence 88777777776653
No 241
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=39.22 E-value=18 Score=32.92 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.2
Q ss_pred ceEEEEeCCCceeeeec
Q 036523 84 KLQLVLDLDHTLLHATD 100 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~ 100 (387)
-..+++|+||||++...
T Consensus 4 ~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 4 IKAILFDLDGTLLDFDS 20 (229)
T ss_pred eeEEEEecCCcccccch
Confidence 35789999999999863
No 242
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=39.18 E-value=50 Score=34.41 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=40.5
Q ss_pred ceEEEeeCccHHHHHHHHhhcc-cEEEEcCCcHHHHHHHHHH-cCC-------CCceeecccEEe
Q 036523 131 GLLLVKLRPYIRSFLKEACKMY-DIYICTMGNRHYAEMIAKL-LDP-------KCEYYISSRLIT 186 (387)
Q Consensus 131 ~~~~v~lRPgl~eFL~~ls~~y-el~IyT~g~~~YA~~i~~~-LDP-------~~~~F~~~Ri~s 186 (387)
..-||.+-|.+..+|+.+.+.= .+.+-||+.-.|++.+++. +++ ...|| +-|++
T Consensus 178 p~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlF--DvVIv 240 (448)
T PF05761_consen 178 PEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLF--DVVIV 240 (448)
T ss_dssp CCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCE--CEEEE
T ss_pred HHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhe--eEEEE
Confidence 4457778999999999999554 7999999999999999985 566 46688 66664
No 243
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=39.18 E-value=10 Score=27.82 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=13.4
Q ss_pred eecccccccccccccC
Q 036523 34 TFNGVCLSCAQTVGEG 49 (387)
Q Consensus 34 ~~~~~C~~Cg~~~~~~ 49 (387)
++.-.|..||.|++++
T Consensus 2 Vf~lvCSTCGrDlSee 17 (63)
T PF05864_consen 2 VFQLVCSTCGRDLSEE 17 (63)
T ss_pred eeeeeecccCCcchHH
Confidence 4566899999999876
No 244
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=39.02 E-value=16 Score=33.66 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.0
Q ss_pred ceEEEEeCCCceeeeec
Q 036523 84 KLQLVLDLDHTLLHATD 100 (387)
Q Consensus 84 kl~LVLDLD~TLihs~~ 100 (387)
|...++|+||||++...
T Consensus 5 ~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDM 21 (210)
T ss_pred CcEEEEcCCCCCccCcc
Confidence 44689999999999853
No 245
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=38.88 E-value=63 Score=32.01 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=34.4
Q ss_pred CchhhhHHHHhhhcccceeeeeccCCCC---CCchHHHHHHHHHhCCeeecccC
Q 036523 287 GDVRSFLAKIRRQILAGCTLFFNMGDVG---PQEFPLLRRRAEELGAACTDVHD 337 (387)
Q Consensus 287 ~DVr~il~~~R~~vl~G~~i~fSg~~~~---~~~~~~l~~la~~lGa~v~~~v~ 337 (387)
.+++.++..+++.+=++-.+++||..|. ++.-..+.+.+.+.|+.+.-+.+
T Consensus 114 ~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 114 AELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred HHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC
Confidence 4455566666665666667899999982 22245677788888888876654
No 246
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=38.25 E-value=15 Score=32.02 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.8
Q ss_pred EEEeCCCceeeeec
Q 036523 87 LVLDLDHTLLHATD 100 (387)
Q Consensus 87 LVLDLD~TLihs~~ 100 (387)
.|+|+||||+....
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 68999999998653
No 247
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=38.00 E-value=16 Score=22.15 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=11.2
Q ss_pred cCCCceee-ccccccccccc
Q 036523 28 SCSHPQTF-NGVCLSCAQTV 46 (387)
Q Consensus 28 ~C~H~~~~-~~~C~~Cg~~~ 46 (387)
.|.+.+.. ...|..||+.+
T Consensus 7 ~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 7 NCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred ccCCcCCcccccChhhCCCC
Confidence 46665443 34777777654
No 248
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=37.42 E-value=82 Score=23.27 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=38.4
Q ss_pred CchhhhHHHHhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEE
Q 036523 287 GDVRSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVS 345 (387)
Q Consensus 287 ~DVr~il~~~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa 345 (387)
.|++.+|..++..- ....+.|+..+.. .++..+..+|+.+|-...+.=...--+|+.
T Consensus 2 ~~~~~~i~~F~~s~-~~~~l~f~p~lt~-~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v 58 (60)
T cd02640 2 NDYRQIIQNYAHSD-DIRDMVFSPEFSK-EERALIHQIAQKYGLKSRSYGSGNDRYLVI 58 (60)
T ss_pred hhHHHHHHHHHcCC-ccceEEcCCCCCH-HHHHHHHHHHHHcCCceeeEeCCCCeEEEE
Confidence 47888888888665 3577888874442 348899999999998765432223344443
No 249
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=37.30 E-value=52 Score=25.76 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.9
Q ss_pred CCceEEEEeCCCceeeee
Q 036523 82 QRKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~ 99 (387)
....+|||+-|||.|.+.
T Consensus 38 ~~~~~lvL~eDGTeVddE 55 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCCeEEEEeCCCcEEccH
Confidence 578899999999999775
No 250
>PHA03082 DNA-dependent RNA polymerase subunit; Provisional
Probab=35.10 E-value=13 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=13.3
Q ss_pred eecccccccccccccC
Q 036523 34 TFNGVCLSCAQTVGEG 49 (387)
Q Consensus 34 ~~~~~C~~Cg~~~~~~ 49 (387)
++.-.|..||.|++++
T Consensus 2 Vf~lVCsTCGrDlSee 17 (63)
T PHA03082 2 VFQLVCSTCGRDLSEE 17 (63)
T ss_pred eeeeeecccCcchhHH
Confidence 4566799999999876
No 251
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=34.91 E-value=56 Score=25.68 Aligned_cols=18 Identities=33% Similarity=0.226 Sum_probs=15.1
Q ss_pred CCceEEEEeCCCceeeee
Q 036523 82 QRKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~ 99 (387)
....+|||+=|||.|.+.
T Consensus 37 ~~~~~lvL~eDGT~Vd~E 54 (79)
T cd06538 37 DCISSLVLDEDGTGVDTE 54 (79)
T ss_pred CCccEEEEecCCcEEccH
Confidence 345899999999999875
No 252
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=34.58 E-value=19 Score=31.61 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=24.3
Q ss_pred CchhhhHHHHhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCee
Q 036523 287 GDVRSFLAKIRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAAC 332 (387)
Q Consensus 287 ~DVr~il~~~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v 332 (387)
++++++|..+|.+ ..-++++||. + ...+..+++.+|-..
T Consensus 92 ~~~~e~i~~~~~~--~~~v~IvS~~-~----~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDN--GIKVVIVSGS-P----DEIIEPIAERLGIDD 130 (192)
T ss_dssp TTHHHHHHHHHHT--TSEEEEEEEE-E----HHHHHHHHHHTTSSE
T ss_pred hhHHHHHHHHHHC--CCEEEEECCC-c----HHHHHHHHHHcCCCc
Confidence 5666888887766 2223455653 3 456777777777653
No 253
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=33.85 E-value=19 Score=32.23 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=11.9
Q ss_pred EEEeCCCceeeeec
Q 036523 87 LVLDLDHTLLHATD 100 (387)
Q Consensus 87 LVLDLD~TLihs~~ 100 (387)
.++|+||||+....
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 58999999999753
No 254
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=31.74 E-value=68 Score=25.12 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.6
Q ss_pred CCceEEEEeCCCceeeee
Q 036523 82 QRKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~ 99 (387)
.....|||+-|||.|...
T Consensus 38 ~~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 38 EEPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp SSTCEEEETTTTCBESSC
T ss_pred CcCcEEEEeCCCcEEccH
Confidence 378899999999999864
No 255
>PRK10671 copA copper exporting ATPase; Provisional
Probab=29.99 E-value=53 Score=36.87 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=57.6
Q ss_pred eeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccCCCCCceeccccccCCCCCeEEEeCC
Q 036523 136 KLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCEDFKDTGKKNLDLVLGQERGVVIVDDT 214 (387)
Q Consensus 136 ~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIiDD~ 214 (387)
.+||++.+.|+.+. ..+.+++.|...+..|..+++.++-+. +| ..+. .++ ..+-++.+......|++|.|.
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~--~~~~-p~~----K~~~i~~l~~~~~~v~~vGDg 721 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VI--AGVL-PDG----KAEAIKRLQSQGRQVAMVGDG 721 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EE--eCCC-HHH----HHHHHHHHhhcCCEEEEEeCC
Confidence 58999999999997 579999999999999999999998764 55 2222 111 112233333345679999998
Q ss_pred hhhhhcCCCCeeE
Q 036523 215 AEVWKDHKENLIL 227 (387)
Q Consensus 215 ~~~w~~~~~N~I~ 227 (387)
..=.+.-...++-
T Consensus 722 ~nD~~al~~Agvg 734 (834)
T PRK10671 722 INDAPALAQADVG 734 (834)
T ss_pred HHHHHHHHhCCee
Confidence 7644432334443
No 256
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=29.02 E-value=72 Score=24.76 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.1
Q ss_pred CceEEEEeCCCceeeee
Q 036523 83 RKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 83 ~kl~LVLDLD~TLihs~ 99 (387)
...+|||+=|||.|.+.
T Consensus 37 ~~~~l~L~eDGT~VddE 53 (74)
T smart00266 37 SPVTLVLEEDGTIVDDE 53 (74)
T ss_pred CCcEEEEecCCcEEccH
Confidence 57899999999999875
No 257
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=28.77 E-value=85 Score=24.60 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.6
Q ss_pred CCceEEEEeCCCceeeee
Q 036523 82 QRKLQLVLDLDHTLLHAT 99 (387)
Q Consensus 82 ~~kl~LVLDLD~TLihs~ 99 (387)
....+|||+=|||.|.+.
T Consensus 38 ~~~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 38 SGLVTLVLEEDGTVVDTE 55 (78)
T ss_pred CCCcEEEEeCCCCEEccH
Confidence 457899999999999875
No 258
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.19 E-value=26 Score=28.25 Aligned_cols=16 Identities=19% Similarity=0.586 Sum_probs=13.0
Q ss_pred eecccccccccccccC
Q 036523 34 TFNGVCLSCAQTVGEG 49 (387)
Q Consensus 34 ~~~~~C~~Cg~~~~~~ 49 (387)
.-.|+|+.||+.+.+.
T Consensus 67 YkkGiCamCGKki~dt 82 (90)
T PF10235_consen 67 YKKGICAMCGKKILDT 82 (90)
T ss_pred cccCcccccCCeeccc
Confidence 3479999999999664
No 259
>PRK03922 hypothetical protein; Provisional
Probab=26.80 E-value=62 Score=26.98 Aligned_cols=49 Identities=8% Similarity=0.293 Sum_probs=31.5
Q ss_pred cccccccccccCC---cc---ceeeecCCc-ccCHHHHHHHhhccchhhhcCCceE
Q 036523 38 VCLSCAQTVGEGY---GL---SFNYMLEGL-EFGKDEVTRLKRMNSEIVFGQRKLQ 86 (387)
Q Consensus 38 ~C~~Cg~~~~~~~---~~---~~~~~~~~l-~vs~~~a~~~~~~~~~~l~~~~kl~ 86 (387)
.|..||++++..- +. .+-....-. -=|++.|.|+.+....+-|+.=+|.
T Consensus 51 ~cP~cge~~~~afvvA~taLVgL~lemkVFnAes~EHA~RIAK~eIG~aL~dvPL~ 106 (113)
T PRK03922 51 ICPKCGEPFDSAFVVADTALVGLLLEMKVFNAESEEHASRIAKSEIGKALRDIPLE 106 (113)
T ss_pred cCCCCCCcCCcEEEEeccceEEEEEEEEEeecCCHHHHHHHHHHHHhhHHhcCCce
Confidence 7999999997641 11 111111111 1189999999999888777777665
No 260
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.71 E-value=62 Score=26.73 Aligned_cols=49 Identities=8% Similarity=0.304 Sum_probs=31.0
Q ss_pred cccccccccccCC---ccceeeecCCccc----CHHHHHHHhhccchhhhcCCceE
Q 036523 38 VCLSCAQTVGEGY---GLSFNYMLEGLEF----GKDEVTRLKRMNSEIVFGQRKLQ 86 (387)
Q Consensus 38 ~C~~Cg~~~~~~~---~~~~~~~~~~l~v----s~~~a~~~~~~~~~~l~~~~kl~ 86 (387)
.|..||..++... +.+.-=+--.++| |++-|+|+.+.....-|+.=+|.
T Consensus 51 ~CP~Cg~~~e~~fvva~~aLVgl~l~mkVFNaes~EHA~RIAK~eIGk~L~~iPL~ 106 (115)
T COG1885 51 SCPKCGEPFESAFVVANTALVGLILSMKVFNAESDEHAERIAKAEIGKALKDIPLE 106 (115)
T ss_pred cCCCCCCccceeEEEecceeEEEEEEEEEecCCCHHHHHHHHHHHHhhHhhcCCce
Confidence 7999999987641 1111100011222 78999999998877767766664
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=25.94 E-value=36 Score=39.33 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.5
Q ss_pred EEEEeCCCceeeeec
Q 036523 86 QLVLDLDHTLLHATD 100 (387)
Q Consensus 86 ~LVLDLD~TLihs~~ 100 (387)
.++|||||||+++..
T Consensus 77 aVIFDlDGTLiDS~~ 91 (1057)
T PLN02919 77 AVLFDMDGVLCNSEE 91 (1057)
T ss_pred EEEECCCCCeEeChH
Confidence 689999999999964
No 262
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=25.53 E-value=69 Score=32.03 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=49.7
Q ss_pred EEEeeCc-cHHHHHHHHhh------cccEEEEcCCcHHHHHHHHHHcCCCCceeecccEEeccC--------C----CCC
Q 036523 133 LLVKLRP-YIRSFLKEACK------MYDIYICTMGNRHYAEMIAKLLDPKCEYYISSRLITCED--------F----KDT 193 (387)
Q Consensus 133 ~~v~lRP-gl~eFL~~ls~------~yel~IyT~g~~~YA~~i~~~LDP~~~~F~~~Ri~srd~--------~----~~~ 193 (387)
+.+.-|| ++++-|+.+.+ -++|+|+-.|.+.-+..+++...-.=+++ .+.-++... + ...
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i-~~~~~~~~~~~~~~~~~~y~~ia~h 84 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHI-QHPPISIKNVNPPHKFQGYYRIARH 84 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEE-EcccccccccCcccccchhhHHHHH
Confidence 4577899 69999998874 48899999998776666665542110133 221111000 0 011
Q ss_pred ceeccccccC--CCCCeEEEeCChh
Q 036523 194 GKKNLDLVLG--QERGVVIVDDTAE 216 (387)
Q Consensus 194 ~~KdL~~l~~--~~~~vvIiDD~~~ 216 (387)
+...|+.++. ..+.+||+||.-.
T Consensus 85 yk~aln~vF~~~~~~~vIILEDDl~ 109 (334)
T cd02514 85 YKWALTQTFNLFGYSFVIILEDDLD 109 (334)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCc
Confidence 2235665554 3789999999754
No 263
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=24.71 E-value=91 Score=35.02 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=56.4
Q ss_pred hhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeee-cccCCCceEEEEcCCCchHHHHHHhC-CCeeeCHHHHHHHHH
Q 036523 297 RRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACT-DVHDSSVTHVVSTRQATEGRRLAEQH-NNFLVHPRWIYAAYY 374 (387)
Q Consensus 297 R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~-~~v~~~vTHlVa~~~~t~K~~~A~~~-gi~IV~~~Wl~~c~~ 374 (387)
....|+|+-++..|..- +....+.+.-.-.|+... ..--+.+||+|+......+++ .. +-+..+++|+.+|.+
T Consensus 44 ~~s~fs~is~~~ngs~~--e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk---~~~~~~~~~~e~iie~~~ 118 (1016)
T KOG2093|consen 44 GSSSFSGISISVNGSTD--ESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK---GFTIPKHISIEWIIECCE 118 (1016)
T ss_pred CcceeeeeeeccCCccc--cchHHHhhhhhhcccccccccccccceeeecccchHHHhc---cccchhhhcHHHHHHHHh
Confidence 35678888888877654 213446665666677766 566678999999876544432 22 346789999999999
Q ss_pred hcccCCCCCC
Q 036523 375 LWSRQAENDY 384 (387)
Q Consensus 375 ~~~r~dE~~Y 384 (387)
...-+.=.+|
T Consensus 119 ~~~~~~~~~~ 128 (1016)
T KOG2093|consen 119 NGMDVGYYPY 128 (1016)
T ss_pred ccCccccccc
Confidence 8876654333
No 264
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=23.96 E-value=45 Score=29.65 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=26.9
Q ss_pred cCchhhhHHHHhhhcccce-eeeeccCCCCCCchHHHHHHHHHhCC
Q 036523 286 WGDVRSFLAKIRRQILAGC-TLFFNMGDVGPQEFPLLRRRAEELGA 330 (387)
Q Consensus 286 ~~DVr~il~~~R~~vl~G~-~i~fSg~~~~~~~~~~l~~la~~lGa 330 (387)
.++++.+|+++|.. |+ +..+|| +.......+++.+|-
T Consensus 129 ~~~~~~~l~~L~~~---Gi~~~i~TG-----D~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 129 RPGAKEALQELKEA---GIKVAILTG-----DNESTASAIAKQLGI 166 (215)
T ss_dssp HTTHHHHHHHHHHT---TEEEEEEES-----SEHHHHHHHHHHTTS
T ss_pred hhhhhhhhhhhhcc---Ccceeeeec-----ccccccccccccccc
Confidence 57899999999887 54 346666 225677888888887
No 265
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=23.76 E-value=2e+02 Score=29.83 Aligned_cols=110 Identities=21% Similarity=0.263 Sum_probs=54.7
Q ss_pred CHHHHHHHhhccchhh---hcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeee---cCceEEEee
Q 036523 64 GKDEVTRLKRMNSEIV---FGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMM---DGGLLLVKL 137 (387)
Q Consensus 64 s~~~a~~~~~~~~~~l---~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l---~~~~~~v~l 137 (387)
+.....++........ +...+-.+|||+|.|...+....+..-. +.+.. .... -.++.. .+.-.-..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~LDiD~T~~~~~G~Qe~~~~-n~y~g--~~gY---~PL~~f~g~~G~~l~a~L 189 (448)
T PF13701_consen 116 DERDLKRLRRALVDLFLASYKKPPKEIVLDIDSTVDDVHGEQEGAVF-NTYYG--EDGY---HPLVAFDGQTGYLLAAEL 189 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHhccccceEEEecccccccchhhcccccc-cccCC--Cccc---ccceeccCCCCceEEEEc
Confidence 3444444444333321 2345578999999998655432111000 00000 0000 001111 345566899
Q ss_pred Ccc-------HHHHHHHHhhcc-----cE-EEEcCCcHHHHHHHHHHcCCCCcee
Q 036523 138 RPY-------IRSFLKEACKMY-----DI-YICTMGNRHYAEMIAKLLDPKCEYY 179 (387)
Q Consensus 138 RPg-------l~eFL~~ls~~y-----el-~IyT~g~~~YA~~i~~~LDP~~~~F 179 (387)
||| ..+||+.+-+.+ +. +++=+-+--|...+++.+.-.|..|
T Consensus 190 RpGn~~sa~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~~y 244 (448)
T PF13701_consen 190 RPGNVHSAKGAAEFLKRVLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGVDY 244 (448)
T ss_pred cCCCCChHHHHHHHHHHHHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCCeE
Confidence 998 666777654332 23 3344444445566888887777533
No 266
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.25 E-value=3.4e+02 Score=23.97 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=43.8
Q ss_pred hhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHHHHHHHh
Q 036523 298 RQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWIYAAYYL 375 (387)
Q Consensus 298 ~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl~~c~~~ 375 (387)
...+.|+.|+||+.-. .+.+.+.+++..++..- ..+ -||+++ + .--..|...|...++++++..=+..
T Consensus 62 ~~~~~gi~Vvft~~~~--tAD~~Ie~~v~~~~~~~-----~~v-~VVTSD-~-~iq~~~~~~GA~~iss~ef~~~l~~ 129 (166)
T PF05991_consen 62 REEYGGIEVVFTKEGE--TADDYIERLVRELKNRP-----RQV-TVVTSD-R-EIQRAARGRGAKRISSEEFLRELKA 129 (166)
T ss_pred eeeeCceEEEECCCCC--CHHHHHHHHHHHhccCC-----CeE-EEEeCC-H-HHHHHHhhCCCEEEcHHHHHHHHHH
Confidence 4456899999997432 34788999998877521 111 133322 2 2234566789999999998875443
No 267
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=22.76 E-value=84 Score=34.38 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=54.9
Q ss_pred HhhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeec------ccCCCceEEEEcC------CCchHHH----HHHhC
Q 036523 296 IRRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTD------VHDSSVTHVVSTR------QATEGRR----LAEQH 359 (387)
Q Consensus 296 ~R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~------~v~~~vTHlVa~~------~~t~K~~----~A~~~ 359 (387)
.+.++|.|..++|-|-+.++- ...+-+++..-||++.. +.++..|-++... ....|.. .|...
T Consensus 583 ~~~kLf~gl~~~~~g~fs~~p-~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~ 661 (684)
T KOG4362|consen 583 YKPKLFEGLKFYFVGDFSNPP-KEQLQELVHLAGGTILQVPRVAYSDKKKSTIVVLSEKPVLDSILWQKVNDAEALALSQ 661 (684)
T ss_pred cCcchhcCCcceeecccccCc-HHHHHHHHhhcCcceeeccCcccccccccceeEeecccCCCchhhhhhccHHHHHHhc
Confidence 568899999999999887544 56777888888888743 2333344444331 2333432 33345
Q ss_pred CCeeeCHHHHHHHHHhcc
Q 036523 360 NNFLVHPRWIYAAYYLWS 377 (387)
Q Consensus 360 gi~IV~~~Wl~~c~~~~~ 377 (387)
+-..|+-.||.+++...+
T Consensus 662 ~a~~~~~~wvl~s~a~~~ 679 (684)
T KOG4362|consen 662 RARAVSSSWVLDSIAGYQ 679 (684)
T ss_pred CCCccchhhhhcchhcee
Confidence 789999999999987554
No 268
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=22.32 E-value=37 Score=32.52 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCH
Q 036523 318 FPLLRRRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHP 366 (387)
Q Consensus 318 ~~~l~~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~ 366 (387)
.+...++.+.+|+ +++|.++.+. |.+.-..|+.++.+.|..
T Consensus 216 ~~cFe~I~~Rfg~-------p~~~f~~IGD-G~eEe~aAk~l~wPFw~I 256 (274)
T TIGR01658 216 LQCFKWIKERFGH-------PKVRFCAIGD-GWEECTAAQAMNWPFVKI 256 (274)
T ss_pred HHHHHHHHHHhCC-------CCceEEEeCC-ChhHHHHHHhcCCCeEEe
Confidence 3455666677776 2477777765 445556677777766643
No 269
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.22 E-value=1.5e+02 Score=27.58 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=37.5
Q ss_pred EeeCccHHHHHHHHh-hcccEEEEcCCcHHHHHHHHHHcCCCC
Q 036523 135 VKLRPYIRSFLKEAC-KMYDIYICTMGNRHYAEMIAKLLDPKC 176 (387)
Q Consensus 135 v~lRPgl~eFL~~ls-~~yel~IyT~g~~~YA~~i~~~LDP~~ 176 (387)
..+-||++||...|. +...+++-+-|=+..+..|.+.|+-..
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 357799999999998 779999999999999999999998653
No 270
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=22.17 E-value=1.4e+02 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=25.9
Q ss_pred hhhcccceeeeeccCCCCCCchHHHHHHHHHhCCeeec
Q 036523 297 RRQILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTD 334 (387)
Q Consensus 297 R~~vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~ 334 (387)
+.++|+|.+|..+--+- .+...+.....++||.|..
T Consensus 37 ~~kPl~G~rIa~cLHle--~kTA~L~~tL~a~GAeV~~ 72 (268)
T PF05221_consen 37 AEKPLKGARIAGCLHLE--AKTAVLAETLKALGAEVRW 72 (268)
T ss_dssp TT-TTTTEEEEEES--S--HHHHHHHHHHHHTTEEEEE
T ss_pred ccCCCCCCEEEEEEech--HHHHHHHHHHHHcCCeEEE
Confidence 46799999998764332 2366888999999999873
No 271
>KOG3908 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=21.96 E-value=89 Score=30.77 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=40.2
Q ss_pred HHHHHhCCeeecccCCCceEEEEcCCCchHHHHHHhCCCeeeCHHHHHHHHHhcccCCCCCCCC
Q 036523 323 RRAEELGAACTDVHDSSVTHVVSTRQATEGRRLAEQHNNFLVHPRWIYAAYYLWSRQAENDYFP 386 (387)
Q Consensus 323 ~la~~lGa~v~~~v~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~Wl~~c~~~~~r~dE~~Y~~ 386 (387)
++-.++||.+.-.++ |||-+-..+.++..|... +..||..|+.+-.|.||..-.|
T Consensus 138 ~iQnalG~DImMQLD----dVV~~~ttg~rveeAM~R-----sIRWlDRCi~Ah~R~d~Q~lFp 192 (396)
T KOG3908|consen 138 EIQNALGADIMMQLD----DVVHTLTTGPRVEEAMYR-----SIRWLDRCIMAHNRDDEQNLFP 192 (396)
T ss_pred HHHHHhchhhhhhhh----ccccccCCchHHHHHHHH-----HHHHHHHHHHHhcCccchhhhh
Confidence 344678888776554 455555556788888887 4689999999999999765444
No 272
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=21.83 E-value=75 Score=32.37 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=33.5
Q ss_pred cccceeeeeccCCCCCCchHHHHHHHHHhCCeeecccCCCceEEEEcC
Q 036523 300 ILAGCTLFFNMGDVGPQEFPLLRRRAEELGAACTDVHDSSVTHVVSTR 347 (387)
Q Consensus 300 vl~G~~i~fSg~~~~~~~~~~l~~la~~lGa~v~~~v~~~vTHlVa~~ 347 (387)
+|......+-|..+ ..++.+.+-...+||.+.+-++..|||+|..+
T Consensus 122 aFp~f~fY~dn~s~--~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR 167 (468)
T COG5067 122 AFPAFKFYKDNKSG--KRKHRVKEGFCELGAVVFTFFEEHVTHFITRR 167 (468)
T ss_pred ccchhhhhhcCCCH--HHHHHHHHHHHHhhhhhheeeccceEEEEEee
Confidence 34444445444333 33456788889999999999999999999874
No 273
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=2e+02 Score=28.77 Aligned_cols=82 Identities=9% Similarity=0.119 Sum_probs=54.5
Q ss_pred hhhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcc--cEE
Q 036523 78 IVFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMY--DIY 155 (387)
Q Consensus 78 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~y--el~ 155 (387)
..++.-...||=|||.|++|+..... -|.-.... + ....--+.=||+..|++.+.+.- .|+
T Consensus 155 ~v~~~a~igiISDiDDTV~~T~V~~~----~r~~~~s~----------~---l~~~tr~~ipGV~~~yr~l~~~~~apvf 217 (373)
T COG4850 155 PVLNRAGIGIISDIDDTVKVTGVTEG----PRKAGRSL----------L---LHALTRQVIPGVSAWYRALTNLGDAPVF 217 (373)
T ss_pred eeecccceeeeeccccceEecccccc----hHHHHHHh----------h---hcccccCCCCCHHHHHHHHHhcCCCCeE
Confidence 35677888999999999999975321 11111100 0 00112234599999999999776 677
Q ss_pred EEcCCcHHHHHHHHHHcCCCC
Q 036523 156 ICTMGNRHYAEMIAKLLDPKC 176 (387)
Q Consensus 156 IyT~g~~~YA~~i~~~LDP~~ 176 (387)
--+++--..-..+-+.|+-++
T Consensus 218 YvSnSPw~~f~~L~efi~~~~ 238 (373)
T COG4850 218 YVSNSPWQLFPTLQEFITNRN 238 (373)
T ss_pred EecCChhHhHHHHHHHHhcCC
Confidence 777887788788888888654
No 274
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=20.56 E-value=50 Score=34.83 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=24.5
Q ss_pred eCccHHHHHHHHhhcccEEEEcCCcHHHHHHHHHH-cCCC
Q 036523 137 LRPYIRSFLKEACKMYDIYICTMGNRHYAEMIAKL-LDPK 175 (387)
Q Consensus 137 lRPgl~eFL~~ls~~yel~IyT~g~~~YA~~i~~~-LDP~ 175 (387)
+||...+-+++ .. +.+|-|++.+.|++++++. |+-+
T Consensus 111 l~~~a~~~~~~--~g-~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWRVFNS--FG-KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHHHHHh--CC-CEEEEECCcHHHHHHHHHHcCCCC
Confidence 55555544433 22 4599999999999999965 5443
No 275
>PRK00536 speE spermidine synthase; Provisional
Probab=20.37 E-value=73 Score=30.69 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=46.5
Q ss_pred hhcCCceEEEEeCCCceeeeecCCCCCccchhhhcccccCCCCCCceeeecCceEEEeeCccHHHHHHHHhhcccEEEEc
Q 036523 79 VFGQRKLQLVLDLDHTLLHATDLDMLAPDDRDYLMKRESSASDGGGLFMMDGGLLLVKLRPYIRSFLKEACKMYDIYICT 158 (387)
Q Consensus 79 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~f~l~~~~~~v~lRPgl~eFL~~ls~~yel~IyT 158 (387)
+++.+.-+..+|+|+-.|..+.. ++.....++.|-+ . ...+ .+.+.-.+.|+++|--
T Consensus 90 vLkh~~~v~mVeID~~Vv~~~k~---------~lP~~~~~~~DpR--v-----~l~~-------~~~~~~~~~fDVIIvD 146 (262)
T PRK00536 90 LFKYDTHVDFVQADEKILDSFIS---------FFPHFHEVKNNKN--F-----THAK-------QLLDLDIKKYDLIICL 146 (262)
T ss_pred HHCcCCeeEEEECCHHHHHHHHH---------HCHHHHHhhcCCC--E-----EEee-------hhhhccCCcCCEEEEc
Confidence 44444468889999999988752 1211111222211 1 1111 2333334789999986
Q ss_pred -CCcHHHHHHHHHHcCCCCc
Q 036523 159 -MGNRHYAEMIAKLLDPKCE 177 (387)
Q Consensus 159 -~g~~~YA~~i~~~LDP~~~ 177 (387)
.-++++-+.+-+.|.|+|.
T Consensus 147 s~~~~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 147 QEPDIHKIDGLKRMLKEDGV 166 (262)
T ss_pred CCCChHHHHHHHHhcCCCcE
Confidence 5667888889999999994
Done!