BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036525
(783 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 46/279 (16%)
Query: 36 LSFSATSPSLTSIRS-PYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIP 94
LSF+AT+P L + PYFFR +D++ AI ++K + W+ + D Q +
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172
Query: 95 SLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKAN 154
LT L+ D + S + D + KL R+ + ++ +++F A
Sbjct: 173 DLTGVLYGEDIEI---SDTESFSNDPCT--SVKKLKGNDVRIILGQFDQNMAAKVFCCAY 227
Query: 155 EIGLMNKGCVWIM-----------TDGMTNLLRTLEPSVIDSMQGVI--DVRPY------ 195
E + WI+ N R L +++ +M+G I D P
Sbjct: 228 EENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIK 287
Query: 196 ----ENPSLFDAELN---------IIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNA 242
+ P ++ E N AYD +A+ +++A + ++ SS
Sbjct: 288 TISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTLQRA------METLHASSRH 341
Query: 243 TDLEAFGISQN--GPKLLQALSSTRFKGLTGDYIFVDGQ 279
++ F + + G +L A++ T F G+TG +F +G+
Sbjct: 342 QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGE 380
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 104/514 (20%), Positives = 183/514 (35%), Gaps = 88/514 (17%)
Query: 196 ENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEA-----FGI 250
E P A + L YDA + + EA +I+ NA D A +G
Sbjct: 260 EYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI---EISRRGNAGDCLANPAVPWG- 315
Query: 251 SQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAFEIINVN-NGARGVGFWTPEKGL-- 306
G ++ +AL + +GL+G+ F +G+ + I+ + NG R +G+W+ +
Sbjct: 316 --QGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVL 373
Query: 307 ----TQKLKLRIGVPVKKGFSDFVNVTID-PKTQEQTSVTGYCIDV---------FK--- 349
T L+ + V S +V + + GYC+D+ FK
Sbjct: 374 TEDDTSGLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKL 433
Query: 350 AVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG--- 406
++ + Y + + +N ++ ++ G+ D + +TI R + F+ P+ G
Sbjct: 434 TIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISI 493
Query: 407 --------KRNAWVFLQPLTWDLWVT-----SGCXXXXXXXXXXXXEHRINDDFRGPAKH 453
K + FL PL +++W+ G ++F +
Sbjct: 494 MIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRET 553
Query: 454 Q---------VGTSFWFSFSTMVFSQRERVISNLA---RFVVIVWCFVVLILTQSYXXXX 501
Q + S WFS F Q+ IS + R V VW F LI+ SY
Sbjct: 554 QSSESTNEFGIFNSLWFSLGA--FMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANL 611
Query: 502 XX------------XXXXXXXXXXITDGSFVLGILKQLGFDERKLVVYNSPEDCHE---- 545
I G+ G K+ F K+ V++
Sbjct: 612 AAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEP 670
Query: 546 -LFQKGSANGGIAAALDEIPYMKLL-------IGQHCSKYTM-IEPKFKTAGFGFVFPLH 596
+F + +A G + Y LL I Q TM + + G+G P
Sbjct: 671 SVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKG 730
Query: 597 SPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 630
S L V+ A+L ++E + ++++ W+ C
Sbjct: 731 SSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGEC 764
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 304 KGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPD--- 360
KG+T LRIGV F+ NV ID + T +TGY +D+ + + ++ + D
Sbjct: 6 KGIT----LRIGVIESVPFTIVANV-IDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQL 60
Query: 361 GSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKR 408
+ SY L+ + G++D +GDIT+ R V F+ +++ R
Sbjct: 61 APPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMR 108
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 312 LRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPD----------G 361
+R VP + + + D E+ G+CID+ K + + ++ D
Sbjct: 31 IRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGK 90
Query: 362 SSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG 406
G +N +I +VF D +G +TI RS V F++P+ E+G
Sbjct: 91 KIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETG 135
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 32 QVPILSFSATSPSLTSIRSPYFF-RGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 90
Q+P +S+++T+P L+ R FF R DS Q A+ I+KA GW + + YGE
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 91 AMIPSLT 97
+ S T
Sbjct: 201 KGVESFT 207
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 32 QVPILSFSATSPSLTSIRSPYFF-RGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 90
Q+P +S+++T+P L+ R FF R DS Q A+ I+KA GW + + YGE
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 91 AMIPSLT 97
+ S T
Sbjct: 201 KGVESFT 207
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 20 PTNFIIQPGNKS------------QVPILSFSATSPSLT-SIRSPYFFRGALNDSSQVGA 66
P +I PG+ S +P +++SATS L+ YF R +D+ Q A
Sbjct: 129 PIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARA 188
Query: 67 ITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKEL 126
+ I+K + W ++ + YGE+ + + D + + I A + +K L
Sbjct: 189 MVDIVKRYNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKLL 248
Query: 127 YKLFTMQTRVFIV 139
KL + + +V
Sbjct: 249 KKLTSHLPKARVV 261
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 253 NGPKLLQALSSTRFKGLTGDYIFVDGQLQSSA-FEIIN 289
+G KLL++L T F G++GD I D S +EI+N
Sbjct: 420 DGRKLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMN 457
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 211 LAYDATRALAEAVEKAGITSFGFDKINVSS--NATDLEA-----FGISQNGPKLLQALSS 263
L YD + +AEA + S +I++S NA D A +G G + +AL
Sbjct: 278 LTYDGVKVMAEAFQ-----SLRRQRIDISRRGNAGDCLANPAVPWG---QGIDIQRALQQ 329
Query: 264 TRFKGLTGDYIFVD-GQLQSSAFEIINV-NNGARGVGFWTPE 303
RF+GLTG+ F + G+ + +I + ++G R +G+W +
Sbjct: 330 VRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 20 PTNFIIQPGNKS------------QVPILSFSATSPSLT-SIRSPYFFRGALNDSSQVGA 66
P +I PG+ S +P +++SATS L+ YF R +D+ Q A
Sbjct: 123 PIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARA 182
Query: 67 ITAIIKAFGWREAVPIYVDNQYGEA 91
+ I+K + W ++ + YGE+
Sbjct: 183 MLDIVKRYNWTYVSAVHTEGNYGES 207
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 20 PTNFIIQPGNKS------------QVPILSFSATSPSLT-SIRSPYFFRGALNDSSQVGA 66
P +I PG+ S +P +++SATS L+ YF R +D+ Q A
Sbjct: 128 PIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARA 187
Query: 67 ITAIIKAFGWREAVPIYVDNQYGEA 91
+ I+K + W ++ + YGE+
Sbjct: 188 MLDIVKRYNWTYVSAVHTEGNYGES 212
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 629
I Q T I + G+G P+ SP ++ AIL + E DK+ +++ W+ + S
Sbjct: 196 ITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWW-RGSG 254
Query: 630 CPD 632
CP+
Sbjct: 255 CPE 257
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 32 QVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 90
Q+P +S+++TS L+ R YF R D Q A+ I++ F W + + YGE
Sbjct: 141 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 200
Query: 91 AMIPS------LTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS 144
I + L + A +V RS I + D + +EL L RV ++
Sbjct: 201 TGIEAFEQEARLRNICIATAEKVG-RSNIR--KSYDSVIREL--LQKPNARVVVLFMRSD 255
Query: 145 LGSRIFEKANEIGLMNKGCVWIMTDG 170
+ AN + N W+ +DG
Sbjct: 256 DSRELIAAANRV---NASFTWVASDG 278
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 629
I Q T I + G+G P+ SP ++ AIL + E DK+ +++ W+ + S
Sbjct: 198 ITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWW-RGSG 256
Query: 630 CP 631
CP
Sbjct: 257 CP 258
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 23/256 (8%)
Query: 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEK 124
GAI +++ + W + V +Y D + G +++ ++ +A + +V RSV + + +
Sbjct: 119 GAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSV-GNIKDVQEFRR 176
Query: 125 ELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTD-GMTNLL--RTLE-- 179
+ ++ Q + +++ + I E+ +G ++G +++ + G T++L R +
Sbjct: 177 IIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGG 236
Query: 180 -------------PSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKA 226
P V +Q + + E P +A L L +DA +AEA
Sbjct: 237 ANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYL 296
Query: 227 GITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAF 285
+ + + A SQ G + +AL + +G+TG+ F G+ +
Sbjct: 297 RRQRVDVSRRGSAGDCLANPAVPWSQ-GIDIERALKMVQVQGMTGNIQFDTYGRRTNYTI 355
Query: 286 EIINVN-NGARGVGFW 300
++ + +G+R G+W
Sbjct: 356 DVYEMKVSGSRKAGYW 371
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 32 QVPILSFSATSPSLT-SIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE 90
Q+P +S+++TS L+ R YF R D Q A+ I++ F W + + YGE
Sbjct: 140 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 199
Query: 91 AMIPSL 96
I +
Sbjct: 200 TGIEAF 205
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 553 NGGIAAALDEIPYMKLLIGQHCSKYTMI--EPK-FKTAGFGFVFPLHSPLVHDVSKAILN 609
NGG+ A + + + + +K + +PK F + +G +FP +S L V +A+ N
Sbjct: 187 NGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKN 246
Query: 610 VTEGDKMKEIEDAWFKKH 627
V K EI WF K
Sbjct: 247 VINSGKYTEIYKKWFGKE 264
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 340 VTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFT 399
+ G+ IDV AV E+ A ++ S++ LI + +FDAV+ + + R V F+
Sbjct: 28 IVGFDIDVANAVCKEMQ-AECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFS 86
Query: 400 LPYTE 404
PY E
Sbjct: 87 QPYYE 91
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 312 LRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPD----------G 361
+R VP +K +N + + + G+CID+ K + + + D
Sbjct: 31 VRNTVPCRKFVK--INNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGK 88
Query: 362 SSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG 406
+ +N +I +V VG +TI RS V F++P+ E+G
Sbjct: 89 KVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETG 133
>pdb|2LBP|A Chain A, Structure Of The L-Leucine-Binding Protein Refined At 2.4
Angstroms Resolution And Comparison With The Leu(Slash)
Ile(Slash)val-Binding Protein Structure
Length = 346
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 31/212 (14%)
Query: 35 ILSFSATSPSLTSIRSPYFFRGALNDSSQ-VGAITAIIKAFGWREAVPIYVDNQYGEAMI 93
++S AT+P LT + R A DSSQ A I++ + I+ QYGE +
Sbjct: 96 MISPGATAPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLA 155
Query: 94 PSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR-----VFIVHKLPSLGSR 148
S+ D L A + V + I+ EK+ L + V+ P +G +
Sbjct: 156 RSVQDGLKAANANVVFFDGITAG------EKDFSALIARLKKENIDFVYYGGYYPEMG-Q 208
Query: 149 IFEKANEIGLM----------NKGCVWIMTDGMTNLLRTLEPSVID---SMQGVIDVRPY 195
+ +A +GL N I D +L T+ P D + QG++D
Sbjct: 209 MLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTM-PKRYDQDPANQGIVDALKA 267
Query: 196 ENPSLFDAELNIIGLLAYDATRALAEAVEKAG 227
+ + + Y A ++LA A+E+ G
Sbjct: 268 DKKDPSGPYV----WITYAAVQSLATALERTG 295
>pdb|1USG|A Chain A, L-Leucine-Binding Protein, Apo Form
pdb|1USK|A Chain A, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|B Chain B, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|C Chain C, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|D Chain D, L-Leucine-Binding Protein With Leucine Bound
pdb|1USI|A Chain A, L-Leucine-Binding Protein With Phenylalanine Bound
pdb|1USI|C Chain C, L-Leucine-Binding Protein With Phenylalanine Bound
Length = 346
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 31/212 (14%)
Query: 35 ILSFSATSPSLTSIRSPYFFRGALNDSSQ-VGAITAIIKAFGWREAVPIYVDNQYGEAMI 93
++S AT+P LT + R A DSSQ A I++ + I+ QYGE +
Sbjct: 96 MISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLA 155
Query: 94 PSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR-----VFIVHKLPSLGSR 148
S+ D L A + V + I+ EK+ L + V+ P +G +
Sbjct: 156 RSVQDGLKAANANVVFFDGITAG------EKDFSALIARLKKENIDFVYYGGYYPEMG-Q 208
Query: 149 IFEKANEIGLM----------NKGCVWIMTDGMTNLLRTLEPSVID---SMQGVIDVRPY 195
+ +A +GL N I D +L T+ P D + QG++D
Sbjct: 209 MLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTM-PKRYDQDPANQGIVDALKA 267
Query: 196 ENPSLFDAELNIIGLLAYDATRALAEAVEKAG 227
+ + + Y A ++LA A+E+ G
Sbjct: 268 DKKDPSGPYV----WITYAAVQSLATALERTG 295
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 231 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 289
Query: 629 SCPDASTVVSSRSLGLNS 646
CP+ + +S +LG+ +
Sbjct: 290 GCPEEESKEAS-ALGVQN 306
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 584 FKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 630
+ +G + P +SP +++A+LN+ E + + D WF +S
Sbjct: 181 LREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDPKNSL 227
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGN- 255
Query: 629 SCPD 632
CP+
Sbjct: 256 GCPE 259
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 196 FVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN- 254
Query: 629 SCPD 632
CP+
Sbjct: 255 GCPE 258
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 629
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 630 CPD 632
CP+
Sbjct: 256 CPE 258
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 629
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 630 CPD 632
CP+
Sbjct: 256 CPE 258
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 340 VTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFT 399
V G+ D+ KAV + A S+ ++ LI + LG+FDA+ G I R V FT
Sbjct: 24 VEGFGADIVKAVCKQXQ-AVCTISNQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFT 82
Query: 400 LPY 402
PY
Sbjct: 83 DPY 85
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 336 EQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNY 395
+ + TG +DV++AV + + S + I V GE D ++G I++ R+
Sbjct: 23 KNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAI 82
Query: 396 VG--FTLPYTESG 406
G FT PY SG
Sbjct: 83 EGITFTQPYFSSG 95
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 336 EQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNY 395
+ + TG +DV++AV + + S + I V GE D ++G I++ R+
Sbjct: 23 KNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAI 82
Query: 396 VG--FTLPYTESG 406
G FT PY SG
Sbjct: 83 EGITFTQPYFSSG 95
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 629
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 630 CP 631
CP
Sbjct: 256 CP 257
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 629
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 196 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 254
Query: 630 CP 631
CP
Sbjct: 255 CP 256
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSS 629
+ Q T I + G+G P+ SP ++ AIL + E K+ +++ W++ +
Sbjct: 197 VTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-G 255
Query: 630 CP 631
CP
Sbjct: 256 CP 257
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 342 GYCIDVFK------------AVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389
GYC+D+ A++P+ Y + + +N ++ ++ G+ + + +TI
Sbjct: 30 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTIT 89
Query: 390 FNRSNYVGFTLPYTESG 406
R + F+ P+ G
Sbjct: 90 LVREEVIDFSKPFMSLG 106
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 342 GYCIDVFK------------AVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389
GYC+D+ A++P+ Y + + +N ++ ++ G+ + + +TI
Sbjct: 32 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTIT 91
Query: 390 FNRSNYVGFTLPYTESG 406
R + F+ P+ G
Sbjct: 92 LVREEVIDFSKPFMSLG 108
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 342 GYCIDVFK------------AVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389
GYC+D+ A++P+ Y + + +N ++ ++ G+ + + +TI
Sbjct: 30 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTIT 89
Query: 390 FNRSNYVGFTLPYTESG 406
R + F+ P+ G
Sbjct: 90 LVREEVIDFSKPFMSLG 106
>pdb|3RMT|A Chain A, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|B Chain B, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|C Chain C, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|D Chain D, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
Length = 455
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 170 GMTNLLRTLEPSVIDSMQGVIDVRPYENP---SLFDAELNIIGLLAYDATRALAEAVEKA 226
G + R EP + SM ID R + N S+ +L I + A+ + A+ A
Sbjct: 123 GKRPMKRVTEP--LKSMGAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVASAQMKSAILLA 180
Query: 227 GITSFGFDKINVSSNATD-----LEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQ 281
G+ + G + + D LEAFG++ L ++ + LTG ++ V G +
Sbjct: 181 GLRAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDGLTVSIEGGQM--LTGQHVVVPGDIS 238
Query: 282 SSAF 285
S+AF
Sbjct: 239 SAAF 242
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 625
I C T+ +P F G+G P +SPL ++S+ I M + D W+K
Sbjct: 234 IDADCKLLTVGKP-FAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK 288
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 119 DDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIM 167
D +I+ +L KL Q+ + +++ + IFE AN +GL G WI+
Sbjct: 182 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 227
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 119 DDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIM 167
D +I+ +L KL Q+ + +++ + IFE AN +GL G WI+
Sbjct: 183 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 228
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDS 61
+L+ ++V ++GP S T + K+ VP++S SAT LT + Y F G DS
Sbjct: 69 NLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQD-YLFIGTFQDS 127
Query: 62 SQVGAITAIIKAFGWREAVPIYVDN 86
Q I+ + + V +Y DN
Sbjct: 128 FQGKIISNYVSEKLNAKKVVLYTDN 152
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 570 IGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 625
I C T+ +P F G+G P +SPL ++S+ I + + D W+K
Sbjct: 232 IDADCKLLTVGKP-FAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYK 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,663,895
Number of Sequences: 62578
Number of extensions: 865985
Number of successful extensions: 2027
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1982
Number of HSP's gapped (non-prelim): 79
length of query: 783
length of database: 14,973,337
effective HSP length: 106
effective length of query: 677
effective length of database: 8,340,069
effective search space: 5646226713
effective search space used: 5646226713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)