Query 036525
Match_columns 783
No_of_seqs 503 out of 3185
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 6.3E-84 2.1E-88 782.3 48.0 651 6-678 58-814 (823)
2 3hsy_A Glutamate receptor 2; l 100.0 4.8E-37 1.6E-41 336.7 22.9 292 2-307 55-372 (376)
3 3o21_A Glutamate receptor 3; p 100.0 1.4E-36 5E-41 334.2 26.6 291 2-307 64-378 (389)
4 3h6g_A Glutamate receptor, ion 100.0 2.1E-35 7.2E-40 326.0 23.2 287 2-307 66-381 (395)
5 3om0_A Glutamate receptor, ion 100.0 1.3E-35 4.5E-40 327.4 21.4 290 3-308 66-380 (393)
6 4gpa_A Glutamate receptor 4; P 100.0 1.7E-34 5.7E-39 317.8 30.1 289 6-307 67-376 (389)
7 3qek_A NMDA glutamate receptor 100.0 7.8E-35 2.7E-39 320.1 25.5 279 3-301 61-368 (384)
8 4f11_A Gamma-aminobutyric acid 100.0 2.5E-35 8.6E-40 329.5 21.7 290 2-303 78-404 (433)
9 3saj_A Glutamate receptor 1; r 100.0 9.2E-35 3.1E-39 319.5 24.0 290 2-307 62-375 (384)
10 3qel_B Glutamate [NMDA] recept 100.0 4.3E-35 1.5E-39 318.6 19.8 279 3-302 58-351 (364)
11 1jdp_A NPR-C, atrial natriuret 100.0 3.8E-33 1.3E-37 312.6 24.6 276 7-305 83-397 (441)
12 2e4u_A Metabotropic glutamate 100.0 2.5E-32 8.7E-37 314.4 28.7 284 6-302 115-464 (555)
13 3sm9_A Mglur3, metabotropic gl 100.0 2.8E-32 9.5E-37 307.6 25.9 282 7-301 115-462 (479)
14 1dp4_A Atrial natriuretic pept 100.0 3.8E-33 1.3E-37 312.0 17.5 280 2-305 71-399 (435)
15 3ks9_A Mglur1, metabotropic gl 100.0 1.8E-31 6.2E-36 302.3 28.3 286 5-301 125-474 (496)
16 3mq4_A Mglur7, metabotropic gl 100.0 3.5E-32 1.2E-36 307.4 15.1 284 7-301 116-467 (481)
17 4f06_A Extracellular ligand-bi 100.0 6.3E-30 2.1E-34 279.6 20.3 262 2-291 66-346 (371)
18 3td9_A Branched chain amino ac 100.0 9.1E-30 3.1E-34 277.7 18.7 270 2-304 75-364 (366)
19 3i45_A Twin-arginine transloca 100.0 7.8E-30 2.7E-34 280.5 16.3 278 2-307 67-364 (387)
20 3i09_A Periplasmic branched-ch 100.0 1.6E-29 5.4E-34 276.8 18.6 260 2-291 65-339 (375)
21 3n0w_A ABC branched chain amin 100.0 3.5E-29 1.2E-33 274.5 17.2 261 2-291 67-343 (379)
22 3ipc_A ABC transporter, substr 100.0 3.1E-29 1.1E-33 272.3 16.5 270 3-304 65-353 (356)
23 4evq_A Putative ABC transporte 100.0 2.3E-28 7.7E-33 267.5 21.8 271 2-302 76-363 (375)
24 3hut_A Putative branched-chain 100.0 9.9E-29 3.4E-33 268.6 18.6 271 2-303 66-354 (358)
25 4eyg_A Twin-arginine transloca 100.0 2.3E-28 7.7E-33 266.8 18.8 261 2-291 66-343 (368)
26 3h5l_A Putative branched-chain 100.0 8.4E-29 2.9E-33 275.3 12.6 277 2-302 77-396 (419)
27 1usg_A Leucine-specific bindin 100.0 8.4E-28 2.9E-32 259.8 17.3 260 3-293 65-340 (346)
28 3lkb_A Probable branched-chain 99.9 3E-28 1E-32 268.4 12.7 279 2-307 69-379 (392)
29 4gnr_A ABC transporter substra 99.9 3E-27 1E-31 256.5 17.8 263 2-300 69-351 (353)
30 3n0x_A Possible substrate bind 99.9 2.5E-27 8.6E-32 259.2 15.5 256 2-291 67-345 (374)
31 3lop_A Substrate binding perip 99.9 3.3E-27 1.1E-31 257.3 15.9 261 2-293 67-352 (364)
32 3eaf_A ABC transporter, substr 99.9 7E-27 2.4E-31 257.3 17.6 271 2-306 70-375 (391)
33 3sg0_A Extracellular ligand-bi 99.9 1.2E-26 4.1E-31 254.7 13.4 271 2-295 83-383 (386)
34 3snr_A Extracellular ligand-bi 99.9 4.1E-26 1.4E-30 248.1 15.3 269 2-295 63-359 (362)
35 1pea_A Amidase operon; gene re 99.9 7.4E-25 2.5E-29 240.6 22.4 269 3-300 70-357 (385)
36 2h4a_A YRAM (HI1655); perplasm 99.9 3E-22 1E-26 212.8 14.3 242 3-291 52-310 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 4.5E-22 1.5E-26 213.2 15.9 250 2-297 52-319 (327)
38 1yae_A Glutamate receptor, ion 99.9 4.3E-22 1.5E-26 211.9 10.9 257 309-644 12-304 (312)
39 1pb7_A N-methyl-D-aspartate re 99.8 6.1E-21 2.1E-25 200.9 9.6 211 338-632 61-292 (292)
40 3g3k_A Glutamate receptor, ion 99.8 1.6E-20 5.4E-25 193.9 10.8 231 310-632 4-259 (259)
41 2rc8_A Glutamate [NMDA] recept 99.8 3E-20 1E-24 195.9 10.4 208 340-631 68-293 (294)
42 2v3u_A Glutamate receptor delt 99.8 2E-19 7E-24 185.9 13.5 231 310-631 3-264 (265)
43 4gvo_A LMO2349 protein; struct 99.8 9.2E-20 3.2E-24 186.4 10.3 222 310-626 9-236 (243)
44 4h5g_A Amino acid ABC superfam 99.8 1.2E-19 4.2E-24 185.4 11.0 223 310-626 12-238 (243)
45 2a5s_A N-methyl-D-aspartate re 99.8 2.9E-19 9.9E-24 187.3 11.8 209 339-631 56-283 (284)
46 3i6v_A Periplasmic His/Glu/Gln 99.8 1.3E-18 4.4E-23 176.4 10.4 218 310-633 5-225 (232)
47 1mqi_A Glutamate receptor 2; G 99.7 3.7E-18 1.3E-22 176.4 12.4 231 310-631 4-262 (263)
48 3kzg_A Arginine 3RD transport 99.7 5.3E-18 1.8E-22 172.2 10.6 224 310-631 3-236 (237)
49 4f3p_A Glutamine-binding perip 99.7 2.9E-17 9.8E-22 168.2 13.5 220 310-628 24-245 (249)
50 3del_B Arginine binding protei 99.7 4.8E-17 1.6E-21 165.5 13.5 219 310-630 11-237 (242)
51 3k4u_A Binding component of AB 99.7 3.3E-17 1.1E-21 167.2 12.3 227 310-632 5-235 (245)
52 3hv1_A Polar amino acid ABC up 99.7 7.1E-17 2.4E-21 167.2 13.1 220 310-626 21-249 (268)
53 1ii5_A SLR1257 protein; membra 99.7 2.2E-16 7.4E-21 159.4 14.9 220 310-626 4-227 (233)
54 3kbr_A Cyclohexadienyl dehydra 99.7 6E-17 2E-21 164.5 10.7 220 310-625 15-237 (239)
55 3tql_A Arginine-binding protei 99.7 2.2E-16 7.6E-21 158.5 12.5 218 310-624 2-227 (227)
56 3h7m_A Sensor protein; histidi 99.6 4.3E-16 1.5E-20 157.3 11.6 218 310-626 11-231 (234)
57 3mpk_A Virulence sensor protei 99.6 2.6E-16 8.9E-21 163.0 10.1 219 310-626 32-253 (267)
58 4eq9_A ABC transporter substra 99.6 7.2E-16 2.5E-20 157.0 13.1 219 310-626 8-236 (246)
59 1wdn_A GLNBP, glutamine bindin 99.6 1.2E-15 4E-20 153.0 13.3 219 310-627 3-224 (226)
60 4dz1_A DALS D-alanine transpor 99.6 8.4E-16 2.9E-20 158.4 12.3 220 310-626 29-254 (259)
61 2iee_A ORF2, probable ABC tran 99.6 1.3E-15 4.5E-20 158.1 12.2 218 310-625 21-246 (271)
62 1lst_A Lysine, arginine, ornit 99.6 6.6E-16 2.3E-20 156.6 9.3 220 310-626 4-233 (239)
63 2y7i_A STM4351; arginine-bindi 99.6 2.1E-15 7.2E-20 151.7 12.8 215 310-625 6-228 (229)
64 2pyy_A Ionotropic glutamate re 99.6 1.6E-15 5.6E-20 152.2 10.3 217 310-626 3-223 (228)
65 2q88_A EHUB, putative ABC tran 99.6 2.9E-15 1E-19 153.8 9.9 221 310-625 13-240 (257)
66 3qax_A Probable ABC transporte 99.6 1E-14 3.4E-19 150.5 12.9 217 310-627 31-255 (268)
67 2yln_A Putative ABC transporte 99.6 1.4E-14 4.7E-19 151.5 13.0 218 310-627 57-279 (283)
68 2pvu_A ARTJ; basic amino acid 99.6 2.6E-14 9.1E-19 148.2 14.3 217 310-626 42-263 (272)
69 4i62_A Amino acid ABC transpor 99.5 1.6E-14 5.6E-19 149.0 11.9 221 310-626 39-265 (269)
70 2vha_A Periplasmic binding tra 99.5 1.6E-14 5.3E-19 151.2 10.7 224 310-630 17-253 (287)
71 1xt8_A Putative amino-acid tra 99.5 3.1E-14 1.1E-18 149.4 11.0 218 310-626 44-266 (292)
72 2yjp_A Putative ABC transporte 99.5 3.3E-14 1.1E-18 149.2 10.7 217 310-625 55-276 (291)
73 2v25_A Major cell-binding fact 99.2 6.4E-12 2.2E-16 128.5 5.2 213 310-624 38-258 (259)
74 2ozz_A Hypothetical protein YH 98.1 5.1E-06 1.7E-10 81.8 7.4 180 338-624 28-223 (231)
75 3p7i_A PHND, subunit of alkylp 97.8 5.4E-05 1.9E-09 79.6 10.2 86 535-624 161-251 (321)
76 3n5l_A Binding protein compone 97.8 4.9E-05 1.7E-09 79.7 8.7 84 537-624 154-242 (310)
77 2h0a_A TTHA0807, transcription 97.6 0.00034 1.2E-08 71.5 11.7 153 5-167 52-213 (276)
78 2qu7_A Putative transcriptiona 97.3 0.00035 1.2E-08 72.0 7.2 189 6-224 61-258 (288)
79 2h3h_A Sugar ABC transporter, 97.2 0.0018 6.1E-08 67.6 12.2 191 7-224 56-254 (313)
80 1dbq_A Purine repressor; trans 97.2 0.0015 5.1E-08 67.2 10.7 193 6-225 61-259 (289)
81 3brq_A HTH-type transcriptiona 97.1 0.00068 2.3E-08 70.0 7.8 192 6-225 75-272 (296)
82 2rjo_A Twin-arginine transloca 97.0 0.0029 1E-07 66.6 11.6 157 9-169 64-231 (332)
83 3bbl_A Regulatory protein of L 97.0 0.0019 6.3E-08 66.5 9.6 157 6-170 62-225 (287)
84 3rot_A ABC sugar transporter, 97.0 0.0016 5.6E-08 67.3 9.3 195 7-225 60-264 (297)
85 3clk_A Transcription regulator 97.0 0.0011 3.9E-08 68.2 7.7 155 6-169 63-221 (290)
86 3c3k_A Alanine racemase; struc 97.0 0.0056 1.9E-07 62.8 12.9 150 6-167 62-217 (285)
87 2hsg_A Glucose-resistance amyl 97.0 0.0018 6.1E-08 68.3 9.3 156 6-169 114-275 (332)
88 3k4h_A Putative transcriptiona 97.0 0.0016 5.5E-08 67.1 8.6 195 4-225 65-264 (292)
89 3d02_A Putative LACI-type tran 96.9 0.0038 1.3E-07 64.5 11.4 156 7-170 60-224 (303)
90 3gbv_A Putative LACI-family tr 96.9 0.0022 7.5E-08 66.4 9.5 192 6-225 67-271 (304)
91 2rgy_A Transcriptional regulat 96.9 0.001 3.5E-08 68.6 6.9 192 6-225 65-261 (290)
92 3g85_A Transcriptional regulat 96.9 0.004 1.4E-07 63.9 11.4 155 3-167 63-221 (289)
93 3dbi_A Sugar-binding transcrip 96.9 0.004 1.4E-07 65.7 11.5 193 6-225 117-314 (338)
94 3egc_A Putative ribose operon 96.9 0.0031 1.1E-07 64.9 10.5 192 6-225 62-258 (291)
95 2o20_A Catabolite control prot 96.9 0.0019 6.5E-08 68.1 8.9 154 6-167 117-272 (332)
96 3brs_A Periplasmic binding pro 96.9 0.0053 1.8E-07 62.9 11.9 192 6-225 63-263 (289)
97 3d8u_A PURR transcriptional re 96.9 0.0038 1.3E-07 63.6 10.3 153 6-167 57-214 (275)
98 3gyb_A Transcriptional regulat 96.9 0.0019 6.4E-08 66.1 8.0 188 5-224 57-247 (280)
99 2fvy_A D-galactose-binding per 96.8 0.0044 1.5E-07 64.3 10.8 151 6-157 57-226 (309)
100 3gv0_A Transcriptional regulat 96.8 0.0059 2E-07 62.7 11.6 154 5-166 63-220 (288)
101 3h75_A Periplasmic sugar-bindi 96.8 0.011 3.9E-07 62.5 13.9 199 7-225 61-279 (350)
102 3g1w_A Sugar ABC transporter; 96.8 0.0059 2E-07 63.2 11.3 194 7-225 60-260 (305)
103 2fn9_A Ribose ABC transporter, 96.8 0.0057 1.9E-07 62.8 10.9 145 6-158 56-215 (290)
104 3hcw_A Maltose operon transcri 96.8 0.0086 3E-07 61.7 12.4 193 4-225 64-264 (295)
105 1qpz_A PURA, protein (purine n 96.8 0.013 4.6E-07 61.7 14.1 193 6-225 112-310 (340)
106 3o74_A Fructose transport syst 96.7 0.02 6.9E-07 57.9 14.8 191 6-225 56-251 (272)
107 3l49_A ABC sugar (ribose) tran 96.7 0.0031 1E-07 64.9 8.7 194 7-225 60-265 (291)
108 3cs3_A Sugar-binding transcrip 96.7 0.012 4.2E-07 59.8 13.2 150 8-168 57-211 (277)
109 2iks_A DNA-binding transcripti 96.7 0.0052 1.8E-07 63.3 10.2 190 6-224 74-268 (293)
110 2x7x_A Sensor protein; transfe 96.7 0.0068 2.3E-07 63.5 11.3 156 6-170 60-223 (325)
111 1tjy_A Sugar transport protein 96.7 0.008 2.7E-07 62.8 11.6 155 7-170 59-223 (316)
112 2fep_A Catabolite control prot 96.7 0.004 1.4E-07 64.1 9.0 191 6-224 70-266 (289)
113 3k9c_A Transcriptional regulat 96.7 0.032 1.1E-06 57.2 15.9 190 6-225 64-257 (289)
114 3ksm_A ABC-type sugar transpor 96.7 0.012 4E-07 59.8 12.4 189 9-224 60-259 (276)
115 3ctp_A Periplasmic binding pro 96.6 0.0023 7.7E-08 67.4 6.7 187 6-225 114-303 (330)
116 3o1i_D Periplasmic protein TOR 96.5 0.0039 1.3E-07 64.5 7.6 196 7-225 62-266 (304)
117 3qk7_A Transcriptional regulat 96.5 0.0052 1.8E-07 63.4 8.1 158 4-169 61-223 (294)
118 2vk2_A YTFQ, ABC transporter p 96.4 0.01 3.4E-07 61.6 10.3 158 7-169 57-227 (306)
119 2k1e_A Water soluble analogue 96.4 0.0037 1.3E-07 53.3 5.2 77 428-508 18-96 (103)
120 3lft_A Uncharacterized protein 96.4 0.031 1.1E-06 57.5 13.4 143 5-158 59-210 (295)
121 3jvd_A Transcriptional regulat 96.3 0.048 1.6E-06 57.2 14.8 183 6-225 117-303 (333)
122 3l6u_A ABC-type sugar transpor 96.3 0.017 5.7E-07 59.3 11.0 190 7-224 63-266 (293)
123 2ioy_A Periplasmic sugar-bindi 96.3 0.04 1.4E-06 56.1 13.5 155 6-170 55-217 (283)
124 3m9w_A D-xylose-binding peripl 96.3 0.015 5.1E-07 60.5 10.3 156 6-169 56-222 (313)
125 3kjx_A Transcriptional regulat 96.3 0.012 3.9E-07 62.3 9.5 193 6-225 122-319 (344)
126 3kke_A LACI family transcripti 96.1 0.013 4.5E-07 60.6 9.0 191 5-225 68-269 (303)
127 2qh8_A Uncharacterized protein 96.1 0.021 7.2E-07 59.0 10.2 128 6-143 67-203 (302)
128 2ih3_C Voltage-gated potassium 96.1 0.011 3.6E-07 52.2 6.7 75 429-507 40-116 (122)
129 3jy6_A Transcriptional regulat 96.1 0.057 1.9E-06 54.7 13.4 149 6-168 61-215 (276)
130 3e3m_A Transcriptional regulat 96.0 0.035 1.2E-06 58.9 11.7 155 6-168 124-284 (355)
131 4fe7_A Xylose operon regulator 96.0 0.051 1.7E-06 59.0 13.2 159 3-167 71-236 (412)
132 1byk_A Protein (trehalose oper 95.9 0.038 1.3E-06 55.3 11.2 148 6-170 56-206 (255)
133 1jx6_A LUXP protein; protein-l 95.9 0.02 6.7E-07 60.3 9.2 151 6-158 102-258 (342)
134 3eff_K Voltage-gated potassium 95.8 0.019 6.5E-07 51.8 7.5 74 430-507 20-95 (139)
135 3bil_A Probable LACI-family tr 95.8 0.035 1.2E-06 58.6 10.8 154 6-169 120-277 (348)
136 8abp_A L-arabinose-binding pro 95.7 0.027 9.4E-07 58.0 9.4 202 7-225 56-273 (306)
137 2a9h_A Voltage-gated potassium 95.6 0.021 7E-07 52.5 6.9 76 429-508 63-140 (155)
138 3h5o_A Transcriptional regulat 95.6 0.043 1.5E-06 57.7 10.6 152 6-167 116-272 (339)
139 3tb6_A Arabinose metabolism tr 95.6 0.01 3.5E-07 61.0 5.3 156 6-168 69-235 (298)
140 2dri_A D-ribose-binding protei 95.5 0.12 4.1E-06 52.2 13.2 155 6-170 55-216 (271)
141 3huu_A Transcription regulator 95.3 0.034 1.2E-06 57.4 8.2 190 4-225 79-274 (305)
142 2fqx_A Membrane lipoprotein TM 95.2 0.12 4.3E-06 53.7 12.3 154 6-168 60-221 (318)
143 4h33_A LMO2059 protein; bilaye 95.2 0.039 1.3E-06 49.6 7.1 56 453-508 42-99 (137)
144 3e61_A Putative transcriptiona 95.1 0.033 1.1E-06 56.5 7.4 146 6-168 62-211 (277)
145 3ixl_A Amdase, arylmalonate de 95.1 0.077 2.6E-06 52.7 9.7 85 64-151 105-198 (240)
146 3hs3_A Ribose operon repressor 94.8 0.062 2.1E-06 54.6 8.4 142 6-167 65-211 (277)
147 1gud_A ALBP, D-allose-binding 94.7 0.25 8.4E-06 50.3 12.5 161 6-170 57-228 (288)
148 3miz_A Putative transcriptiona 94.6 0.012 4E-07 60.9 2.3 153 6-167 68-230 (301)
149 1jye_A Lactose operon represso 94.5 0.22 7.4E-06 52.5 11.9 150 6-167 116-271 (349)
150 3ldc_A Calcium-gated potassium 93.9 0.12 4.3E-06 41.6 6.5 52 454-505 28-81 (82)
151 3h5t_A Transcriptional regulat 93.6 0.078 2.7E-06 56.3 6.4 190 6-225 126-338 (366)
152 2hqb_A Transcriptional activat 93.5 1.4 4.7E-05 45.1 15.4 140 6-157 61-204 (296)
153 3ouf_A Potassium channel prote 93.1 0.11 3.9E-06 43.3 5.2 58 453-510 31-90 (97)
154 3lkv_A Uncharacterized conserv 92.8 0.74 2.5E-05 47.3 12.2 145 3-158 65-221 (302)
155 3uug_A Multiple sugar-binding 92.6 0.38 1.3E-05 49.9 9.7 151 7-162 58-232 (330)
156 3pjs_K KCSA, voltage-gated pot 92.5 0.019 6.6E-07 53.5 -0.5 71 433-507 50-122 (166)
157 2q67_A Potassium channel prote 92.5 0.22 7.6E-06 42.9 6.3 54 454-507 49-104 (114)
158 3ox4_A Alcohol dehydrogenase 2 91.2 0.92 3.1E-05 48.3 10.7 91 64-154 19-111 (383)
159 1p7b_A Integral membrane chann 91.0 0.4 1.4E-05 49.7 7.5 59 452-510 94-154 (333)
160 3vou_A ION transport 2 domain 90.9 0.41 1.4E-05 43.4 6.7 55 453-507 51-107 (148)
161 3bfj_A 1,3-propanediol oxidore 90.9 1.2 4.1E-05 47.5 11.4 88 66-153 23-114 (387)
162 3qi7_A Putative transcriptiona 90.6 1.4 4.9E-05 46.1 11.2 155 3-161 82-252 (371)
163 1orq_C Potassium channel; volt 90.2 0.48 1.7E-05 46.2 6.9 73 430-506 145-219 (223)
164 1xl4_A Inward rectifier potass 89.7 0.62 2.1E-05 47.7 7.5 58 451-508 79-138 (301)
165 4gx0_A TRKA domain protein; me 88.8 0.82 2.8E-05 51.6 8.4 48 453-500 50-99 (565)
166 2dgd_A 223AA long hypothetical 88.6 1.7 5.9E-05 42.2 9.6 80 64-146 96-184 (223)
167 3s99_A Basic membrane lipoprot 88.0 4.4 0.00015 42.5 12.9 142 6-158 84-230 (356)
168 1lnq_A MTHK channels, potassiu 88.0 0.3 1E-05 51.1 3.8 57 454-510 45-103 (336)
169 1rrm_A Lactaldehyde reductase; 87.7 2 7E-05 45.7 10.2 89 66-154 21-111 (386)
170 2xed_A Putative maleate isomer 86.2 2.6 8.7E-05 42.5 9.4 79 64-145 134-220 (273)
171 1vlj_A NADH-dependent butanol 85.7 2 6.9E-05 46.1 8.9 88 66-153 33-123 (407)
172 2x26_A Periplasmic aliphatic s 85.5 3.7 0.00012 41.8 10.5 98 522-625 122-232 (308)
173 2qks_A KIR3.1-prokaryotic KIR 85.3 1.6 5.6E-05 44.9 7.5 56 454-509 78-135 (321)
174 3beh_A MLL3241 protein; transm 85.1 0.73 2.5E-05 48.6 5.0 74 429-506 140-215 (355)
175 3un6_A Hypothetical protein sa 84.2 2.8 9.5E-05 43.6 9.0 99 522-625 172-283 (341)
176 1o2d_A Alcohol dehydrogenase, 84.0 3.8 0.00013 43.3 9.9 89 65-154 30-121 (371)
177 3uhj_A Probable glycerol dehyd 83.6 1.6 5.5E-05 46.4 6.8 82 66-151 43-126 (387)
178 3qsl_A Putative exported prote 82.2 2.9 9.9E-05 43.2 8.2 49 521-573 155-205 (346)
179 2r9r_B Paddle chimera voltage 78.9 3 0.0001 46.2 7.0 54 452-505 373-428 (514)
180 4dik_A Flavoprotein; TM0755, e 78.0 11 0.00039 40.1 11.1 93 76-173 265-365 (410)
181 3uif_A Sulfonate ABC transport 78.0 6.5 0.00022 40.9 9.1 85 521-610 135-228 (348)
182 3m9w_A D-xylose-binding peripl 77.7 6.3 0.00022 40.0 8.9 79 77-158 3-84 (313)
183 3ukm_A Potassium channel subfa 77.2 3 0.0001 41.8 5.8 58 453-510 200-266 (280)
184 1jq5_A Glycerol dehydrogenase; 75.6 5.2 0.00018 42.2 7.6 95 67-169 23-119 (370)
185 2qpq_A Protein BUG27; alpha/be 75.6 10 0.00035 38.6 9.5 93 525-624 151-267 (301)
186 3ce9_A Glycerol dehydrogenase; 75.4 5.6 0.00019 41.7 7.7 97 67-171 25-123 (354)
187 2f5x_A BUGD; periplasmic bindi 74.4 15 0.0005 37.7 10.4 93 525-624 160-276 (312)
188 3gbv_A Putative LACI-family tr 74.2 8.3 0.00028 38.7 8.6 84 75-158 7-95 (304)
189 1mkz_A Molybdenum cofactor bio 73.8 14 0.00048 34.1 9.1 66 76-143 10-79 (172)
190 3l49_A ABC sugar (ribose) tran 72.7 9.1 0.00031 38.2 8.4 79 77-158 6-87 (291)
191 3h75_A Periplasmic sugar-bindi 71.5 8 0.00027 40.1 7.8 81 75-158 2-87 (350)
192 3ksx_A Nitrate transport prote 69.4 27 0.00091 35.6 11.2 72 521-596 147-219 (324)
193 3jzd_A Iron-containing alcohol 69.4 8.9 0.00031 40.1 7.5 97 65-170 25-123 (358)
194 3hl0_A Maleylacetate reductase 69.2 11 0.00036 39.5 8.0 97 65-170 23-121 (353)
195 2dvz_A BUGE, putative exported 67.9 15 0.00052 37.6 8.7 95 525-624 164-280 (314)
196 1oj7_A Hypothetical oxidoreduc 67.4 14 0.00048 39.4 8.8 83 67-153 43-128 (408)
197 3uug_A Multiple sugar-binding 66.9 13 0.00045 37.9 8.2 79 77-158 4-85 (330)
198 3g1w_A Sugar ABC transporter; 66.4 9.7 0.00033 38.4 7.0 80 77-158 5-87 (305)
199 2l69_A Rossmann 2X3 fold prote 64.9 41 0.0014 26.7 8.5 52 53-107 53-104 (134)
200 3tb6_A Arabinose metabolism tr 64.4 19 0.00065 35.8 8.7 79 77-158 16-100 (298)
201 3l6u_A ABC-type sugar transpor 64.3 13 0.00045 37.0 7.5 81 75-158 7-90 (293)
202 1ta9_A Glycerol dehydrogenase; 64.3 10 0.00034 41.1 6.8 97 65-169 80-178 (450)
203 3ix1_A N-formyl-4-amino-5-amin 64.2 7 0.00024 39.5 5.4 48 338-385 15-62 (302)
204 3jy6_A Transcriptional regulat 64.1 19 0.00066 35.5 8.6 78 76-158 7-86 (276)
205 3brq_A HTH-type transcriptiona 63.9 19 0.00064 35.9 8.6 84 71-158 14-102 (296)
206 3um7_A Potassium channel subfa 63.7 9.6 0.00033 38.8 6.1 52 454-505 224-283 (309)
207 2fn9_A Ribose ABC transporter, 63.4 15 0.00051 36.6 7.7 79 77-158 3-84 (290)
208 3dbi_A Sugar-binding transcrip 63.2 19 0.00066 36.8 8.7 85 71-158 56-144 (338)
209 3o74_A Fructose transport syst 61.3 8.9 0.00031 37.8 5.4 79 77-158 3-83 (272)
210 3um7_A Potassium channel subfa 61.1 15 0.00053 37.3 7.0 54 452-505 113-168 (309)
211 2l82_A Designed protein OR32; 60.5 69 0.0024 26.2 11.6 97 53-158 4-104 (162)
212 1y5e_A Molybdenum cofactor bio 60.1 33 0.0011 31.4 8.7 68 74-143 11-82 (169)
213 3k4h_A Putative transcriptiona 59.8 14 0.00047 36.9 6.6 81 74-158 6-93 (292)
214 2fvy_A D-galactose-binding per 58.7 23 0.00078 35.5 8.1 79 77-158 3-85 (309)
215 2iks_A DNA-binding transcripti 57.9 11 0.00038 37.7 5.5 87 69-158 13-101 (293)
216 3huu_A Transcription regulator 57.4 11 0.00039 37.9 5.5 87 68-158 14-107 (305)
217 1tjy_A Sugar transport protein 57.4 12 0.00042 38.1 5.8 80 77-158 4-86 (316)
218 2fep_A Catabolite control prot 57.3 22 0.00075 35.4 7.7 79 76-158 16-96 (289)
219 1jx6_A LUXP protein; protein-l 57.2 25 0.00085 36.0 8.3 82 77-158 44-129 (342)
220 3rot_A ABC sugar transporter, 56.9 12 0.00041 37.6 5.6 81 77-158 4-87 (297)
221 2pjk_A 178AA long hypothetical 56.9 38 0.0013 31.3 8.5 68 74-143 13-91 (178)
222 3rfq_A Pterin-4-alpha-carbinol 56.7 28 0.00096 32.4 7.5 67 75-143 29-99 (185)
223 8abp_A L-arabinose-binding pro 55.2 24 0.00082 35.3 7.6 78 77-158 3-83 (306)
224 3p6l_A Sugar phosphate isomera 55.2 54 0.0018 32.0 10.1 94 64-158 24-129 (262)
225 3d02_A Putative LACI-type tran 55.1 21 0.0007 35.8 7.0 80 77-158 5-87 (303)
226 3rf7_A Iron-containing alcohol 54.9 30 0.001 36.3 8.3 85 66-154 40-132 (375)
227 2is8_A Molybdopterin biosynthe 54.6 34 0.0012 31.1 7.7 64 78-143 3-72 (164)
228 3kke_A LACI family transcripti 54.3 22 0.00074 35.7 7.1 87 68-158 7-95 (303)
229 2fqx_A Membrane lipoprotein TM 53.9 32 0.0011 35.0 8.3 63 77-143 5-72 (318)
230 3lmz_A Putative sugar isomeras 53.0 44 0.0015 32.5 9.0 94 64-158 32-127 (257)
231 3e61_A Putative transcriptiona 52.7 24 0.00081 34.8 6.9 77 76-158 8-87 (277)
232 2zsk_A PH1733, 226AA long hypo 52.6 22 0.00076 34.3 6.4 41 65-108 104-144 (226)
233 3iv7_A Alcohol dehydrogenase I 52.6 12 0.00041 39.3 4.7 95 65-170 26-122 (364)
234 3k9c_A Transcriptional regulat 52.1 26 0.00089 34.9 7.2 84 69-158 5-89 (289)
235 1ccw_A Protein (glutamate muta 51.7 81 0.0028 27.5 9.5 86 78-170 5-94 (137)
236 1zbm_A Hypothetical protein AF 51.4 38 0.0013 33.4 8.3 70 536-613 129-210 (280)
237 3fni_A Putative diflavin flavo 51.4 40 0.0014 30.3 7.6 88 77-172 5-99 (159)
238 2ks1_B Epidermal growth factor 50.9 21 0.0007 24.6 4.0 16 663-678 27-42 (44)
239 3ksm_A ABC-type sugar transpor 50.3 22 0.00074 34.9 6.1 80 78-158 2-85 (276)
240 3pzy_A MOG; ssgcid, seattle st 50.3 34 0.0012 31.1 6.9 64 77-143 8-76 (164)
241 2rgy_A Transcriptional regulat 49.7 23 0.00078 35.3 6.3 79 76-158 8-91 (290)
242 2x7x_A Sensor protein; transfe 49.7 41 0.0014 34.1 8.4 80 76-158 6-88 (325)
243 2rjo_A Twin-arginine transloca 49.3 27 0.00093 35.6 6.9 79 77-158 6-89 (332)
244 2ioy_A Periplasmic sugar-bindi 49.0 32 0.0011 34.1 7.2 79 77-158 2-83 (283)
245 2dri_A D-ribose-binding protei 48.1 33 0.0011 33.6 7.1 79 77-158 2-83 (271)
246 3egc_A Putative ribose operon 47.6 18 0.00061 36.1 5.1 80 75-158 7-88 (291)
247 3s99_A Basic membrane lipoprot 47.6 41 0.0014 35.0 7.9 77 75-155 25-107 (356)
248 2h3h_A Sugar ABC transporter, 47.5 33 0.0011 34.6 7.1 79 78-158 3-83 (313)
249 2vk2_A YTFQ, ABC transporter p 47.4 28 0.00095 35.0 6.5 79 77-158 3-84 (306)
250 3h5o_A Transcriptional regulat 47.0 47 0.0016 33.8 8.4 81 74-158 60-142 (339)
251 3okf_A 3-dehydroquinate syntha 47.0 51 0.0017 34.7 8.5 95 70-169 56-158 (390)
252 3c3k_A Alanine racemase; struc 46.8 47 0.0016 32.7 8.1 79 75-158 7-87 (285)
253 3qk7_A Transcriptional regulat 46.5 26 0.00089 34.9 6.1 78 76-158 6-89 (294)
254 2qip_A Protein of unknown func 46.4 88 0.003 28.2 9.2 92 66-158 37-134 (165)
255 3bil_A Probable LACI-family tr 46.3 33 0.0011 35.3 7.0 78 77-158 67-146 (348)
256 3d8u_A PURR transcriptional re 45.9 30 0.001 33.9 6.4 78 77-158 4-83 (275)
257 3i42_A Response regulator rece 45.9 81 0.0028 26.1 8.5 57 91-156 14-72 (127)
258 1sg6_A Pentafunctional AROM po 45.6 83 0.0028 33.1 10.0 94 71-169 31-140 (393)
259 3gv0_A Transcriptional regulat 45.5 29 0.001 34.4 6.3 81 74-158 6-90 (288)
260 2hsg_A Glucose-resistance amyl 45.5 30 0.001 35.3 6.5 78 77-158 61-140 (332)
261 3kbq_A Protein TA0487; structu 45.3 53 0.0018 30.1 7.3 62 77-141 4-70 (172)
262 3iwt_A 178AA long hypothetical 45.3 53 0.0018 30.2 7.5 64 78-143 17-91 (178)
263 3sya_A G protein-activated inw 45.2 57 0.0019 33.6 8.3 59 452-510 89-151 (340)
264 3kjx_A Transcriptional regulat 45.2 57 0.0019 33.3 8.7 78 77-158 69-148 (344)
265 2l69_A Rossmann 2X3 fold prote 44.9 1.1E+02 0.0038 24.2 7.9 35 51-85 26-60 (134)
266 3tsm_A IGPS, indole-3-glycerol 44.8 1.6E+02 0.0054 29.2 11.2 87 64-158 81-170 (272)
267 3lte_A Response regulator; str 44.2 91 0.0031 26.0 8.6 58 91-157 17-76 (132)
268 2o20_A Catabolite control prot 44.1 46 0.0016 33.8 7.7 80 75-158 62-143 (332)
269 2g2c_A Putative molybdenum cof 44.0 32 0.0011 31.4 5.7 64 78-143 7-79 (167)
270 4es6_A Uroporphyrinogen-III sy 43.7 27 0.00092 34.2 5.6 89 61-155 113-206 (254)
271 2yxb_A Coenzyme B12-dependent 43.7 1.3E+02 0.0043 27.1 9.7 86 77-169 19-108 (161)
272 4ddd_A Immunogenic protein; ss 43.0 16 0.00054 37.6 3.8 51 338-388 43-97 (327)
273 2hqb_A Transcriptional activat 42.7 40 0.0014 33.8 6.9 64 77-143 6-73 (296)
274 3umf_A Adenylate kinase; rossm 42.7 7.3 0.00025 37.6 1.1 35 5-39 27-61 (217)
275 3hs3_A Ribose operon repressor 42.2 36 0.0012 33.5 6.3 70 69-141 3-75 (277)
276 1jye_A Lactose operon represso 41.9 53 0.0018 33.7 7.8 82 75-158 60-143 (349)
277 3e3m_A Transcriptional regulat 41.8 59 0.002 33.4 8.2 80 75-158 69-150 (355)
278 1y80_A Predicted cobalamin bin 41.6 1.2E+02 0.0041 28.5 9.7 89 77-171 89-181 (210)
279 3hly_A Flavodoxin-like domain; 41.3 53 0.0018 29.5 6.8 87 78-172 2-94 (161)
280 3t6k_A Response regulator rece 41.3 95 0.0032 26.3 8.3 58 91-157 15-74 (136)
281 3ukm_A Potassium channel subfa 41.3 26 0.00089 35.0 4.9 54 452-505 91-146 (280)
282 2l2t_A Receptor tyrosine-prote 41.0 36 0.0012 23.3 4.0 12 667-678 30-41 (44)
283 3grc_A Sensor protein, kinase; 41.0 81 0.0028 26.7 7.8 57 91-156 17-75 (140)
284 3gt7_A Sensor protein; structu 40.2 1E+02 0.0034 26.8 8.5 58 91-157 18-77 (154)
285 3to5_A CHEY homolog; alpha(5)b 40.0 1.2E+02 0.0041 26.3 8.6 67 80-157 15-83 (134)
286 3bbl_A Regulatory protein of L 39.6 34 0.0012 33.9 5.6 78 77-158 5-88 (287)
287 1dbq_A Purine repressor; trans 39.5 47 0.0016 32.7 6.8 65 76-143 7-73 (289)
288 1i4n_A Indole-3-glycerol phosp 39.3 1.3E+02 0.0045 29.3 9.6 85 65-158 64-151 (251)
289 2eq5_A 228AA long hypothetical 39.3 14 0.00049 35.6 2.7 73 68-145 108-186 (228)
290 1xah_A Sadhqs, 3-dehydroquinat 38.8 36 0.0012 35.4 5.8 96 67-170 24-126 (354)
291 1jlj_A Gephyrin; globular alph 38.0 82 0.0028 29.3 7.6 68 74-143 12-88 (189)
292 3cg4_A Response regulator rece 37.9 1.4E+02 0.0046 25.2 8.9 56 91-155 18-75 (142)
293 3brs_A Periplasmic binding pro 37.7 18 0.00063 35.8 3.3 81 77-158 6-91 (289)
294 3hp4_A GDSL-esterase; psychrot 37.5 2E+02 0.0069 25.6 10.5 70 77-146 3-79 (185)
295 4a29_A Engineered retro-aldol 37.2 1.3E+02 0.0044 29.4 8.9 86 66-160 68-156 (258)
296 3clk_A Transcription regulator 36.8 30 0.001 34.3 4.8 79 76-158 8-89 (290)
297 2q5c_A NTRC family transcripti 36.7 1.1E+02 0.0036 28.6 8.3 109 34-159 54-162 (196)
298 2pln_A HP1043, response regula 36.7 1.1E+02 0.0037 25.8 7.9 55 91-156 29-83 (137)
299 3spc_A Inward-rectifier K+ cha 36.5 56 0.0019 33.7 6.6 60 452-511 92-155 (343)
300 3cnb_A DNA-binding response re 36.5 1.5E+02 0.0052 24.8 8.9 58 91-156 19-79 (143)
301 2qxy_A Response regulator; reg 36.3 1.5E+02 0.0051 25.0 8.9 58 91-157 15-73 (142)
302 1uuy_A CNX1, molybdopterin bio 36.2 58 0.002 29.6 6.1 65 77-143 6-81 (167)
303 3miz_A Putative transcriptiona 36.0 91 0.0031 30.8 8.3 86 68-158 5-93 (301)
304 3gl9_A Response regulator; bet 35.8 1.5E+02 0.005 24.4 8.5 58 91-157 13-72 (122)
305 1qpz_A PURA, protein (purine n 35.6 89 0.003 31.7 8.3 67 74-143 56-124 (340)
306 3rvy_A ION transport protein; 35.5 33 0.0011 34.3 4.7 55 453-507 179-241 (285)
307 3hcw_A Maltose operon transcri 35.4 40 0.0014 33.5 5.4 79 76-158 7-92 (295)
308 2dwu_A Glutamate racemase; iso 35.4 72 0.0025 31.7 7.2 34 4-37 65-98 (276)
309 3ezx_A MMCP 1, monomethylamine 35.0 1.6E+02 0.0054 27.9 9.3 90 77-172 93-188 (215)
310 3o1i_D Periplasmic protein TOR 35.0 33 0.0011 34.2 4.7 80 77-158 6-88 (304)
311 1zud_1 Adenylyltransferase THI 34.7 2E+02 0.0069 27.9 10.3 89 63-157 39-143 (251)
312 2bon_A Lipid kinase; DAG kinas 34.6 1E+02 0.0035 31.4 8.5 94 52-156 11-105 (332)
313 3lua_A Response regulator rece 34.6 1E+02 0.0035 26.1 7.4 56 91-155 15-75 (140)
314 3hzh_A Chemotaxis response reg 34.5 1.1E+02 0.0036 26.7 7.7 59 91-157 47-109 (157)
315 2gzm_A Glutamate racemase; enz 34.2 37 0.0013 33.7 4.8 33 5-37 62-94 (267)
316 2jwa_A Receptor tyrosine-prote 33.5 75 0.0026 21.8 4.6 23 654-676 17-39 (44)
317 2vvr_A Ribose-5-phosphate isom 33.3 1.4E+02 0.0048 26.5 7.8 64 84-147 7-73 (149)
318 2oho_A Glutamate racemase; iso 33.2 26 0.00091 34.9 3.5 33 5-37 71-103 (273)
319 3eod_A Protein HNR; response r 33.1 1.2E+02 0.0043 25.0 7.6 58 91-157 18-77 (130)
320 3hdv_A Response regulator; PSI 32.9 1.3E+02 0.0046 25.1 7.9 58 91-157 18-78 (136)
321 3kht_A Response regulator; PSI 32.7 1.5E+02 0.005 25.1 8.2 72 91-169 16-89 (144)
322 2qr3_A Two-component system re 32.7 1.2E+02 0.0041 25.4 7.6 58 91-157 14-78 (140)
323 1jfl_A Aspartate racemase; alp 32.7 24 0.00081 34.1 3.0 40 65-107 105-144 (228)
324 1gud_A ALBP, D-allose-binding 32.7 67 0.0023 31.7 6.6 81 77-158 2-85 (288)
325 3hv2_A Response regulator/HD d 32.7 1.3E+02 0.0045 25.9 8.0 58 91-157 25-84 (153)
326 1di6_A MOGA, molybdenum cofact 32.4 1.1E+02 0.0038 28.5 7.5 65 77-143 4-76 (195)
327 1tmy_A CHEY protein, TMY; chem 32.4 1.8E+02 0.006 23.5 8.4 59 91-157 13-73 (120)
328 2zay_A Response regulator rece 32.2 1.5E+02 0.0052 25.1 8.2 56 91-155 19-76 (147)
329 1kq3_A Glycerol dehydrogenase; 31.6 15 0.00053 38.6 1.5 94 66-169 32-127 (376)
330 3f6c_A Positive transcription 31.3 1E+02 0.0036 25.6 6.8 59 91-157 12-72 (134)
331 2jfn_A Glutamate racemase; cel 31.2 85 0.0029 31.4 6.9 35 4-38 80-114 (285)
332 3sr0_A Adenylate kinase; phosp 31.0 16 0.00055 34.7 1.4 31 9-39 2-32 (206)
333 3qbe_A 3-dehydroquinate syntha 30.7 1.7E+02 0.0059 30.3 9.4 109 50-169 22-138 (368)
334 2lpm_A Two-component response 30.6 56 0.0019 28.0 4.7 67 81-158 12-80 (123)
335 2pbq_A Molybdenum cofactor bio 30.0 1.3E+02 0.0043 27.6 7.4 63 78-143 7-78 (178)
336 3o6p_A Peptide ABC transporter 30.0 68 0.0023 30.5 5.9 54 78-139 100-155 (229)
337 3kto_A Response regulator rece 29.9 99 0.0034 26.1 6.4 58 91-157 17-78 (136)
338 2pju_A Propionate catabolism o 29.5 95 0.0033 29.8 6.6 109 34-159 66-174 (225)
339 2j48_A Two-component sensor ki 29.5 1.9E+02 0.0066 22.9 8.1 58 91-157 12-71 (119)
340 2qv7_A Diacylglycerol kinase D 29.4 2.1E+02 0.007 29.1 9.8 76 76-156 24-103 (337)
341 3l4e_A Uncharacterized peptida 29.2 90 0.0031 29.4 6.4 86 64-158 15-102 (206)
342 3p9x_A Phosphoribosylglycinami 29.1 1.3E+02 0.0045 28.4 7.4 88 64-157 16-105 (211)
343 3c3m_A Response regulator rece 28.7 2.2E+02 0.0076 23.7 8.6 58 91-157 14-73 (138)
344 3h8v_A Ubiquitin-like modifier 28.6 2.6E+02 0.009 27.8 10.0 95 62-157 46-162 (292)
345 2qu7_A Putative transcriptiona 28.5 76 0.0026 31.2 6.1 65 76-143 8-73 (288)
346 1usg_A Leucine-specific bindin 28.2 1.2E+02 0.004 30.6 7.7 80 78-158 4-94 (346)
347 3zy2_A Putative GDP-fucose pro 28.0 1.4E+02 0.0046 30.7 7.5 88 57-157 261-348 (362)
348 3jte_A Response regulator rece 27.9 2.2E+02 0.0074 23.9 8.5 58 91-157 14-75 (143)
349 3cz5_A Two-component response 27.8 1.8E+02 0.0062 24.9 8.0 59 91-157 16-77 (153)
350 2h0a_A TTHA0807, transcription 27.3 24 0.00081 34.7 2.0 76 79-158 2-79 (276)
351 3cg0_A Response regulator rece 27.1 1.7E+02 0.0058 24.4 7.6 58 91-156 20-80 (140)
352 1zz1_A Histone deacetylase-lik 27.0 62 0.0021 33.8 5.1 78 64-141 159-265 (369)
353 2rdm_A Response regulator rece 27.0 2.3E+02 0.0077 23.3 8.3 58 91-157 16-77 (132)
354 2rjn_A Response regulator rece 26.5 2.2E+02 0.0077 24.3 8.4 58 91-157 18-77 (154)
355 3nhm_A Response regulator; pro 26.3 2.1E+02 0.0073 23.5 8.0 57 91-157 15-73 (133)
356 3c5y_A Ribose/galactose isomer 26.0 1.3E+02 0.0046 28.7 6.7 73 74-146 17-97 (231)
357 3he8_A Ribose-5-phosphate isom 26.0 2.3E+02 0.0078 25.1 7.8 66 82-147 4-72 (149)
358 3cfy_A Putative LUXO repressor 26.0 2.2E+02 0.0074 23.9 8.0 58 91-157 15-74 (137)
359 3s5p_A Ribose 5-phosphate isom 25.7 2.1E+02 0.0073 25.8 7.6 66 81-146 24-92 (166)
360 3ph3_A Ribose-5-phosphate isom 25.6 2.3E+02 0.0077 25.7 7.8 66 81-146 23-91 (169)
361 1o1x_A Ribose-5-phosphate isom 25.5 2.6E+02 0.0088 24.9 8.1 68 79-146 13-83 (155)
362 3eul_A Possible nitrate/nitrit 25.0 2.8E+02 0.0097 23.5 8.8 83 75-169 12-97 (152)
363 1q9u_A Uncharacterized protein 24.9 1.8E+02 0.0063 24.8 7.1 69 90-167 16-86 (130)
364 3a10_A Response regulator; pho 24.9 2.4E+02 0.0081 22.5 7.8 58 91-157 12-71 (116)
365 1j3m_A The conserved hypotheti 24.6 2.9E+02 0.01 23.4 8.4 70 90-168 13-84 (129)
366 1byk_A Protein (trehalose oper 24.6 1E+02 0.0035 29.5 6.1 63 77-142 3-67 (255)
367 3pam_A Transmembrane protein; 24.4 1.6E+02 0.0055 28.4 7.6 49 62-111 100-162 (259)
368 3re1_A Uroporphyrinogen-III sy 24.4 25 0.00085 34.9 1.5 87 62-154 122-213 (269)
369 3hut_A Putative branched-chain 24.4 1.3E+02 0.0043 30.6 7.1 79 77-158 5-97 (358)
370 2gkg_A Response regulator homo 24.3 2.2E+02 0.0076 22.9 7.6 57 91-156 16-75 (127)
371 1c3p_A Protein (HDLP (histone 24.2 1.5E+02 0.0051 30.9 7.4 76 67-142 150-256 (375)
372 3ist_A Glutamate racemase; str 24.0 57 0.002 32.3 4.0 33 5-37 64-96 (269)
373 5nul_A Flavodoxin; electron tr 23.9 1.7E+02 0.0059 24.9 6.9 82 79-172 1-91 (138)
374 3hdg_A Uncharacterized protein 23.7 1.8E+02 0.0061 24.2 7.0 58 91-157 18-77 (137)
375 3h1g_A Chemotaxis protein CHEY 23.6 2.6E+02 0.0089 22.9 8.0 59 91-157 16-77 (129)
376 2q02_A Putative cytoplasmic pr 23.5 4.8E+02 0.016 24.8 11.2 78 64-141 21-106 (272)
377 3lvu_A ABC transporter, peripl 23.4 1.4E+02 0.0047 28.9 6.9 50 62-111 99-163 (258)
378 2qv0_A Protein MRKE; structura 23.4 2.3E+02 0.0078 23.8 7.7 59 91-157 20-81 (143)
379 1jw9_B Molybdopterin biosynthe 23.3 3.9E+02 0.013 25.7 10.0 88 62-157 41-146 (249)
380 2jfq_A Glutamate racemase; cel 23.2 82 0.0028 31.5 5.1 33 5-37 81-113 (286)
381 3pdi_B Nitrogenase MOFE cofact 23.2 2.6E+02 0.009 29.9 9.4 73 65-142 302-384 (458)
382 1k68_A Phytochrome response re 23.1 2.8E+02 0.0096 22.8 8.2 58 91-157 13-81 (140)
383 3h5i_A Response regulator/sens 23.1 2.9E+02 0.0098 23.1 8.3 57 91-156 16-76 (140)
384 3clh_A 3-dehydroquinate syntha 23.0 99 0.0034 31.8 5.8 90 76-169 26-120 (343)
385 3k7p_A Ribose 5-phosphate isom 22.7 3.5E+02 0.012 24.7 8.5 66 82-147 26-96 (179)
386 3g85_A Transcriptional regulat 22.7 36 0.0012 33.6 2.3 84 71-158 6-92 (289)
387 3crn_A Response regulator rece 22.7 2.6E+02 0.0088 23.1 7.8 58 91-157 14-73 (132)
388 3heb_A Response regulator rece 22.5 2.7E+02 0.0093 23.6 8.1 72 91-169 15-97 (152)
389 2pl1_A Transcriptional regulat 22.2 2.9E+02 0.0099 22.1 7.9 58 91-157 11-70 (121)
390 1mb3_A Cell division response 22.1 2.7E+02 0.0092 22.4 7.7 57 91-156 12-70 (124)
391 3lft_A Uncharacterized protein 22.1 97 0.0033 30.6 5.5 65 77-142 3-71 (295)
392 3r0j_A Possible two component 21.7 2.3E+02 0.0079 26.9 8.1 58 91-157 34-93 (250)
393 3f2i_A ALR0221 protein; alpha- 21.6 1.7E+02 0.0056 26.6 6.5 93 58-155 27-123 (172)
394 3cs3_A Sugar-binding transcrip 21.5 1.4E+02 0.0047 29.0 6.4 72 76-158 8-81 (277)
395 2vvt_A Glutamate racemase; iso 21.3 99 0.0034 30.9 5.2 33 5-37 83-115 (290)
396 3qja_A IGPS, indole-3-glycerol 21.3 2.5E+02 0.0086 27.6 8.1 88 64-159 74-164 (272)
397 3rqi_A Response regulator prot 21.1 2.7E+02 0.0094 24.8 8.1 68 91-169 18-87 (184)
398 2dgd_A 223AA long hypothetical 21.1 1.9E+02 0.0064 27.4 7.1 66 74-144 2-77 (223)
399 4evq_A Putative ABC transporte 21.1 1.6E+02 0.0054 30.0 7.1 81 75-158 15-107 (375)
400 1xrs_B D-lysine 5,6-aminomutas 21.0 4.9E+02 0.017 25.4 10.0 101 64-170 106-224 (262)
401 3uhf_A Glutamate racemase; str 20.8 1.5E+02 0.0052 29.3 6.4 34 4-37 82-115 (274)
402 1dbw_A Transcriptional regulat 20.7 3.4E+02 0.012 22.0 9.1 58 91-157 14-73 (126)
403 2nr1_A NR1 M2, M2; receptor, s 20.4 34 0.0012 20.5 0.9 18 453-470 7-24 (27)
404 3lkv_A Uncharacterized conserv 20.3 1.8E+02 0.006 29.0 7.0 66 76-142 8-78 (302)
405 4ab5_A Transcriptional regulat 20.2 3E+02 0.01 24.8 8.4 85 519-611 120-206 (222)
406 3jvd_A Transcriptional regulat 20.2 63 0.0022 32.8 3.6 65 74-142 62-128 (333)
407 2i2x_B MTAC, methyltransferase 20.1 3.9E+02 0.013 25.9 9.3 87 76-170 123-213 (258)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=6.3e-84 Score=782.31 Aligned_cols=651 Identities=19% Similarity=0.306 Sum_probs=529.5
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+++|.|||||.+|..+.++++++++++||+|+++ .+.. .+++|+||+.|+ |+.+++++++++||++|++|| |
T Consensus 58 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d 129 (823)
T 3kg2_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D 129 (823)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-C
T ss_pred hcCcEEEEcCCChhHHHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-e
Confidence 3489999999999999999999999999999983 3333 357999999988 899999999999999999999 8
Q ss_pred CCcCCcchHHHHHHHhhCCceEeEEEecCCC--CChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccccce
Q 036525 86 NQYGEAMIPSLTDALHAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGC 163 (783)
Q Consensus 86 ~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~--~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~ 163 (783)
++||++.++.+.+++++.|+||+..+.++.+ .++.|+.+++.+|+++++|+|++++...++..+++||+++||..++|
T Consensus 130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~ 209 (823)
T 3kg2_A 130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209 (823)
T ss_dssp GGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTC
T ss_pred CChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCe
Confidence 8999999999999999999999999877755 23569999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccccccCChhhhhcccceeEeeeC------------CCCCCcc--------cccchHHHHHHHHHHHHHHHH
Q 036525 164 VWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY------------ENPSLFD--------AELNIIGLLAYDATRALAEAV 223 (783)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~--------~~~~~~~~~aYDAv~~la~Al 223 (783)
+||.++......+. ....+...|+.++.++ +|.+.++ ..|+.+++++|||++++|+|+
T Consensus 210 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al 287 (823)
T 3kg2_A 210 HYIIANLGFTDGDL--LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF 287 (823)
T ss_dssp EEEECSSBSSSSCC--SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccccccch--HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHH
Confidence 99999854322221 1222344567777655 2333332 236789999999999999999
Q ss_pred HHhcccccCccccccCCCCcccccc--cCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEEEE
Q 036525 224 EKAGITSFGFDKINVSSNATDLEAF--GISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGF 299 (783)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~ 299 (783)
++++....+..+.. ...+|... ..|.+|++|+++|++++|+|++|+++|| +|++....|+|++++ ++++.||.
T Consensus 288 ~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~ 364 (823)
T 3kg2_A 288 RNLRKQRIEISRRG---NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGY 364 (823)
T ss_dssp HHHHTTTCCCCCSS---CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEE
T ss_pred HHHHhhccccccCC---CCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEE
Confidence 99987543322111 12334332 4577899999999999999999999998 899988999999999 88999999
Q ss_pred ECCCCCCcc---------cceEEEEecccCCccccEEEe--eCCCCCCCccEEEeeHHHHHHHhhhCCCC------C---
Q 036525 300 WTPEKGLTQ---------KLKLRIGVPVKKGFSDFVNVT--IDPKTQEQTSVTGYCIDVFKAVIPELPYA------P--- 359 (783)
Q Consensus 300 w~~~~~~~~---------~~~L~V~v~~~~p~~~f~~~~--~~~~~~~~~~~~G~~idl~~~ia~~l~f~------~--- 359 (783)
|.+..++.. .++|+|++...+||. +.+ .++.+++ +++.|||+||+++++++|||+ +
T Consensus 365 w~~~~g~~~~~~~~~~~~~~~l~v~~~~~~P~~---~~~~~~~~~~~~-~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~ 440 (823)
T 3kg2_A 365 WSEVDKMVLTEDDTSGLEQKTVVVTTILESPYV---MMKANHAALAGN-ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGK 440 (823)
T ss_dssp EETTTEEEECCCCCSSCCCCCEEEEECCCTTTS---EECTTGGGCCGG-GGEESHHHHHHHHHHHHHTCCEEEEECSSCC
T ss_pred EcCCCCceeccCcccccCCCEEEEEEecCCCcE---EEecCccccCCC-CceEEEHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 998876542 289999998878775 332 1223455 889999999999999999999 2
Q ss_pred CC---CCCCChHHHHHHHHcCeecEEEeceeeecccceeeeccccccccc-----------ccccceeeccCChhHHHHH
Q 036525 360 DG---SSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG-----------KRNAWVFLQPLTWDLWVTS 425 (783)
Q Consensus 360 ~~---~~~~~~~gli~~l~~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~-----------~~~~~~~l~PF~~~vWl~i 425 (783)
+| ..+++|++++++|.+|++|++++++++|++|.+.+|||.||+.++ .++++.|++||++.+|+++
T Consensus 441 ~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i 520 (823)
T 3kg2_A 441 YGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCI 520 (823)
T ss_dssp CCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHH
T ss_pred ccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHH
Confidence 22 346789999999999999999999999999999999999999998 3567899999999999999
Q ss_pred HHHHHHHHHhhheeecccCCCCCC--------------CccCccchhHHHHHHHhhhcccc-cccccchhhhHHHHHHHH
Q 036525 426 GCFFIFIGFVVWVFEHRINDDFRG--------------PAKHQVGTSFWFSFSTMVFSQRE-RVISNLARFVVIVWCFVV 490 (783)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~-~~~s~~~R~l~~~w~l~~ 490 (783)
+++++++++++|+++|..+.+++. ....++.+++|++++++++++.. .|++.++|+++++|||++
T Consensus 521 ~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~ 600 (823)
T 3kg2_A 521 VFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFT 600 (823)
T ss_dssp HHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHH
Confidence 999999999999998875332221 11235779999999999988854 679999999999999999
Q ss_pred HHHHHHhhhhhhheeeccccCCcccC----------------CchHHHHHHhcCCCc-----------ccceecCChhHH
Q 036525 491 LILTQSYTASLTSLLTVQQLQPTITD----------------GSFVLGILKQLGFDE-----------RKLVVYNSPEDC 543 (783)
Q Consensus 491 lil~s~Yta~L~s~Lt~~~~~~~i~s----------------gs~~~~~l~~~~~~~-----------~~~~~~~~~~~~ 543 (783)
|||+++|+|+|+|+||++++.++|++ ++...+++++..... .....+.+.+++
T Consensus 601 lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (823)
T 3kg2_A 601 LIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 680 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHH
Confidence 99999999999999999999999888 233445555432211 011234578888
Q ss_pred HHHHh-cCcccCceeEEecchhHHHHHHhhc-CCceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHH
Q 036525 544 HELFQ-KGSANGGIAAALDEIPYMKLLIGQH-CSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIED 621 (783)
Q Consensus 544 ~~~l~-~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~ 621 (783)
++.+. .+. .+|++.+.+.+.|+.+++ |+ ++++++.+...++++++||||||++.||++|++|+|+|++++|.+
T Consensus 681 ~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~ 755 (823)
T 3kg2_A 681 VARVRKSKG----KYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKN 755 (823)
T ss_dssp HHHHHTTTT----SEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhccCC----ceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHH
Confidence 88886 333 689999999999988777 97 899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCC--CcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 036525 622 AWFKKHSSCPDAST--VVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLR 678 (783)
Q Consensus 622 kw~~~~~~c~~~~~--~~~~~~L~l~~l~g~F~il~~g~~ls~~vfl~E~~~~~~~~~r 678 (783)
+|+.+...|..... .....+|+++++.|+|+++++|+++|+++|++|++|++|+++|
T Consensus 756 ~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 756 KWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK 814 (823)
T ss_dssp HHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 99988889987653 2456799999999999999999999999999999999887755
No 2
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=4.8e-37 Score=336.65 Aligned_cols=292 Identities=18% Similarity=0.242 Sum_probs=222.6
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|+++ +|.+||||.+|..+.++++++++++||+|++++. . ..+++|+||+.|+ |+.+++++++++||++|++
T Consensus 55 ~li~~-~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vai 126 (376)
T 3hsy_A 55 SQFSR-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAY 126 (376)
T ss_dssp HHHHT-TCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEE
T ss_pred HHHhc-CcEEEECCCchhHHHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEE
Confidence 46665 8999999999999999999999999999999763 2 2357899999876 8999999999999999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCC--CChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~--~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
|| |++||+...+.|.+++++.|++|+....+++. .++.||.++|.+|+++++|+||+++...++..+++|++++||.
T Consensus 127 i~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~ 205 (376)
T 3hsy_A 127 LY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKH 205 (376)
T ss_dssp EE-CSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSS
T ss_pred EE-eCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccC
Confidence 99 89999999999999999999999988776543 2456999999999999999999999999999999999999999
Q ss_pred ccceEEEEeCCcccccccCChhhhhcccceeEeeeC------------CCCCCccc--------ccchHHHHHHHHHHHH
Q 036525 160 NKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY------------ENPSLFDA--------ELNIIGLLAYDATRAL 219 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~~--------~~~~~~~~aYDAv~~l 219 (783)
.++|+||+++......+ +. .......++.++..+ +|+++++. .|+.+++++|||++++
T Consensus 206 ~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~l 283 (376)
T 3hsy_A 206 VKGYHYIIANLGFTDGD-LL-KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVM 283 (376)
T ss_dssp GGGCEEEECSSBTTSTT-GG-GSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCccccc-hH-HhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHH
Confidence 89999999873221111 11 111222336665543 34444432 4889999999999999
Q ss_pred HHHHHHhcccccCccccccCCCCccc--ccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcE
Q 036525 220 AEAVEKAGITSFGFDKINVSSNATDL--EAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGAR 295 (783)
Q Consensus 220 a~Al~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~ 295 (783)
|+|++++++......+. ....+| +....|.+|.+|+++|++++|+|++|+++|| +|++....|+|+++. +|++
T Consensus 284 a~Ai~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~ 360 (376)
T 3hsy_A 284 TEAFRNLRKQRIEISRR---GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPR 360 (376)
T ss_dssp HHHHHHHHHTTCCCSCC---CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEE
T ss_pred HHHHHHHHhcCCccccC---CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCce
Confidence 99999998653221111 111234 4445678899999999999999999999998 999988999999999 8999
Q ss_pred EEEEECCCCCCc
Q 036525 296 GVGFWTPEKGLT 307 (783)
Q Consensus 296 ~vg~w~~~~~~~ 307 (783)
.||+|++..|+.
T Consensus 361 ~VG~w~~~~g~~ 372 (376)
T 3hsy_A 361 KIGYWSEVDKMV 372 (376)
T ss_dssp EEEEEETTTEEE
T ss_pred EEEEEcCCCCce
Confidence 999999998875
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1.4e-36 Score=334.15 Aligned_cols=291 Identities=16% Similarity=0.227 Sum_probs=239.2
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|+++ +|.|||||.+|..+.+++++++.++||+|+++. |.++ ..+|.||+.|+ |+.+++++++++||++|++
T Consensus 64 ~li~~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vai 135 (389)
T 3o21_A 64 SQFSR-GVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVY 135 (389)
T ss_dssp HHHTT-TCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEE
T ss_pred HHHhc-CcEEEEeCCChhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEE
Confidence 46666 999999999999999999999999999999864 4443 45777888776 8999999999999999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|| |++||...++.|.+++++.|+||+..+.++. .++.||.++|.+|+++++|+||++++..++..+++||+++||..+
T Consensus 136 i~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~ 213 (389)
T 3o21_A 136 LY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSR 213 (389)
T ss_dssp EE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCST
T ss_pred EE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccC
Confidence 99 8899999999999999999999998887653 234589999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC------------CCCCCccc--------ccchHHHHHHHHHHHHHH
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY------------ENPSLFDA--------ELNIIGLLAYDATRALAE 221 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~~--------~~~~~~~~aYDAv~~la~ 221 (783)
+|+||+++.|....+. ........|+.++..+ +|.+.++. .++.+++++|||++++|+
T Consensus 214 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~ 291 (389)
T 3o21_A 214 GYHYMLANLGFTDILL--ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAE 291 (389)
T ss_dssp TCEEEECCTTGGGCCC--HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEccCCcccccH--HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHH
Confidence 9999998865543322 1233455677777654 33344332 357899999999999999
Q ss_pred HHHHhcccccCccccccCCCCccc--ccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEE
Q 036525 222 AVEKAGITSFGFDKINVSSNATDL--EAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGV 297 (783)
Q Consensus 222 Al~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~v 297 (783)
|+++++.......+. ....+| +....|.+|.+|+++|++++|+|++|+++|| +|++....|+|+++. ++++.|
T Consensus 292 Al~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~V 368 (389)
T 3o21_A 292 AFRYLRRQRVDVSRR---GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKA 368 (389)
T ss_dssp HHHHHHHTTCCCC--------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEE
T ss_pred HHHHHHhhCcccccC---CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceee
Confidence 999998643221110 111233 3345688999999999999999999999998 999988899999999 889999
Q ss_pred EEECCCCCCc
Q 036525 298 GFWTPEKGLT 307 (783)
Q Consensus 298 g~w~~~~~~~ 307 (783)
|+|++..|+.
T Consensus 369 G~w~~~~g~~ 378 (389)
T 3o21_A 369 GYWNEYERFV 378 (389)
T ss_dssp EEEETTTEEE
T ss_pred eEEcCCCCcc
Confidence 9999998876
No 4
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2.1e-35 Score=325.98 Aligned_cols=287 Identities=19% Similarity=0.267 Sum_probs=240.1
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|++ ++|.+||||.+|..+.++++++++++||+|+++++++.+++ +.+|+||+.|++..|+.+++++++++||++|++
T Consensus 66 ~l~~-~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~i 143 (395)
T 3h6g_A 66 DQLS-LGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTV 143 (395)
T ss_dssp HHHH-HCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEE
T ss_pred Hhhh-cCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3554 48999999999999999999999999999999999999986 478999999999999999999999999999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|| |++||+...+.+++.+++.|++|+... ++.+ +.|+.+++.+|+++++|+|++++...++..+++|++++||..+
T Consensus 144 i~-d~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~--~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~ 219 (395)
T 3h6g_A 144 VY-DDSTGLIRLQELIKAPSRYNLRLKIRQ-LPAD--TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTE 219 (395)
T ss_dssp EE-SSTHHHHHTHHHHTGGGTSSCEEEEEE-CCSS--GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCST
T ss_pred EE-EChhHHHHHHHHHHhhhcCCceEEEEE-eCCC--chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCC
Confidence 98 788999999999999999999998875 6644 5699999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcccccccCChhhhhcccc--eeEeeeC------------CCCCCcc-c-----------ccchHHHHHHHH
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQG--VIDVRPY------------ENPSLFD-A-----------ELNIIGLLAYDA 215 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~------------~~~~~~~-~-----------~~~~~~~~aYDA 215 (783)
.|+||+++......+.... ...| +.++..+ +|.+++. . .|+.+++++|||
T Consensus 220 ~~~~i~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDa 295 (395)
T 3h6g_A 220 YYHYIFTTLDLFALDVEPY----RYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDA 295 (395)
T ss_dssp TCEEEECCTTGGGBCCTTT----TTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHH
T ss_pred ceEEEEecCceeEechHHh----ccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhH
Confidence 9999998643222111110 1223 3444433 2222221 1 146799999999
Q ss_pred HHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe--cCccccceEEEEEec-C
Q 036525 216 TRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV--DGQLQSSAFEIINVN-N 292 (783)
Q Consensus 216 v~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd--~G~~~~~~~~I~~~~-~ 292 (783)
++++++|++++++... ...+|.....|.++++|+++|++++|+|++|+++|| +|++....+.|++++ +
T Consensus 296 v~~~a~Al~~a~~~~~---------~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~ 366 (395)
T 3h6g_A 296 VHVVSVAVQQFPQMTV---------SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEE 366 (395)
T ss_dssp HHHHHHHHHTCTTCCC---------CCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETT
T ss_pred HHHHHHHHHhhhcCCC---------cCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccC
Confidence 9999999999986531 124566667889999999999999999999999996 799988899999999 8
Q ss_pred CcEEEEEECCCCCCc
Q 036525 293 GARGVGFWTPEKGLT 307 (783)
Q Consensus 293 ~~~~vg~w~~~~~~~ 307 (783)
+++.||.|++..|+.
T Consensus 367 ~~~~vG~w~~~~g~~ 381 (395)
T 3h6g_A 367 GLEKIGTWDPASGLN 381 (395)
T ss_dssp EEEEEEEEETTTEEC
T ss_pred CceEEEEEcCCCCcc
Confidence 899999999998876
No 5
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=1.3e-35 Score=327.36 Aligned_cols=290 Identities=17% Similarity=0.270 Sum_probs=231.9
Q ss_pred ccccCCeEEEEccCCchh-HHHHHcccCCCCccEEeeccCCCCCCCCCCCeE--EEeecCchhhHHHHHHHHHHcCCeEE
Q 036525 3 LLNNAQVRVMLGPEDSMP-TNFIIQPGNKSQVPILSFSATSPSLTSIRSPYF--FRGALNDSSQVGAITAIIKAFGWREA 79 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~-~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~--fr~~p~~~~~~~ai~~~l~~~gw~~v 79 (783)
|+ +++|.+||||.+|+. +.++++++++++||+|++++++. ...++||| ||+.|++..|+.+++++++++||++|
T Consensus 66 l~-~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~v 142 (393)
T 3om0_A 66 IL-PKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSA 142 (393)
T ss_dssp HG-GGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCE
T ss_pred HH-hcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEE
Confidence 44 468999999999965 57999999999999999987641 12468898 99999999999999999999999999
Q ss_pred EEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 80 VPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 80 aii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
++||+|++||+.+.+.+ +++++.|++|+... ++ ++.|+.+++.+|+++++|+|++++...++..+++|++++||.
T Consensus 143 aii~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 217 (393)
T 3om0_A 143 SLICAKAECLLRLEELV-RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMT 217 (393)
T ss_dssp EEEESSTTHHHHTHHHH-HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTT
T ss_pred EEEEeCchHHHHHHHHH-HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcc
Confidence 99999999999876666 55778899997654 32 345899999999999999999999999999999999999999
Q ss_pred ccceEEEEeCCcccccccCChhhhhcccceeEeeeCC------------CCCCcc--------cccchHHHHHHHHHHHH
Q 036525 160 NKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYE------------NPSLFD--------AELNIIGLLAYDATRAL 219 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~--------~~~~~~~~~aYDAv~~l 219 (783)
.++|+||++++...... +. .......|+.++..+. |.++++ ..|+.+++++|||++++
T Consensus 218 ~~~~~~i~~~~~~~~~~-l~-~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~l 295 (393)
T 3om0_A 218 SAFYKYILTTMDFPILH-LD-GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVV 295 (393)
T ss_dssp STTCEEEECCTTGGGCC-CT-TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEecccccccc-hh-hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHH
Confidence 88999999886544332 21 1223456777776541 111222 25788999999999999
Q ss_pred HHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEE
Q 036525 220 AEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGV 297 (783)
Q Consensus 220 a~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~v 297 (783)
++|++++++... ......+|.....|.++.+|+++|++++|+|++|+++|| +|++....|+|++++ ++++.|
T Consensus 296 a~Al~~~~~~~~------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~V 369 (393)
T 3om0_A 296 VSAVRELNRSQE------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREI 369 (393)
T ss_dssp HHHHHHHTTTSC------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEE
T ss_pred HHHHHHHhhccc------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEe
Confidence 999999976421 112235566677789999999999999999999999998 999988999999999 889999
Q ss_pred EEECCCCCCcc
Q 036525 298 GFWTPEKGLTQ 308 (783)
Q Consensus 298 g~w~~~~~~~~ 308 (783)
|.|++..|+..
T Consensus 370 G~w~~~~gl~~ 380 (393)
T 3om0_A 370 GVWYSNRTLAM 380 (393)
T ss_dssp EEEECC-----
T ss_pred eeEcCCCCccc
Confidence 99999988763
No 6
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-34 Score=317.80 Aligned_cols=289 Identities=16% Similarity=0.195 Sum_probs=235.9
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+++|.|||||.+|..+.+++++++.++||+|+++++.+..+ +|++++| +. +++++++++++|||++|++||++
T Consensus 67 ~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~~~--~~~~~~~--~~---~~~a~~~l~~~~~w~~vaii~~~ 139 (389)
T 4gpa_A 67 SRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGES--QFVLQLR--PS---LRGALLSLLDHYEWNCFVFLYDT 139 (389)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSCC--SSEEECS--CC---CHHHHHHHHHHTTCCEEEEEECS
T ss_pred hcCCEEEEeCCccHHHHHHHHHHHHhCCCceeccccccccc--cCCcccc--CC---HHHHHHHHHHHcCCcEEEEEEec
Confidence 35999999999999999999999999999999876554332 3455544 43 46789999999999999999987
Q ss_pred CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccccceEE
Q 036525 86 NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVW 165 (783)
Q Consensus 86 ~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~~~ 165 (783)
+.++. ..+.+.+++++.|++|+....++ ..+.|+.++|.+++++++|+|++.++..++..++++|+++||..++|+|
T Consensus 140 d~~~~-~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~ 216 (389)
T 4gpa_A 140 DRGYS-ILQAIMEKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHY 216 (389)
T ss_dssp TTCSH-HHHHHHHHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEE
T ss_pred chhhH-HHHHHHHHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEE
Confidence 77765 56778889999999998877654 5567999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccccccCChhhhhcccceeEeeeC------------CCC-------CCcccccchHHHHHHHHHHHHHHHHHHh
Q 036525 166 IMTDGMTNLLRTLEPSVIDSMQGVIDVRPY------------ENP-------SLFDAELNIIGLLAYDATRALAEAVEKA 226 (783)
Q Consensus 166 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~-------~~~~~~~~~~~~~aYDAv~~la~Al~~a 226 (783)
++++.+...... ........|+.++..+ .|. ...+..|+.+++++||||+++|+|++++
T Consensus 217 i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~ 294 (389)
T 4gpa_A 217 IIANLGFKDISL--ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSL 294 (389)
T ss_dssp EECSSBGGGSCC--HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCccccchhh--hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999877654332 2344566677776654 111 1234568899999999999999999999
Q ss_pred cccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEEEEECCCC
Q 036525 227 GITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPEK 304 (783)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~w~~~~ 304 (783)
........... ...+..+....+|.+|.+|+++|++++|+|++|+++|| +|++....|+|+|++ ++++.||.|++.+
T Consensus 295 ~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~ 373 (389)
T 4gpa_A 295 RRQKIDISRRG-NAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMD 373 (389)
T ss_dssp HHTTCCCCCTT-CCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTT
T ss_pred HhhcccccccC-CccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCC
Confidence 87654332211 12234556667899999999999999999999999998 999988899999999 8899999999998
Q ss_pred CCc
Q 036525 305 GLT 307 (783)
Q Consensus 305 ~~~ 307 (783)
|+.
T Consensus 374 gl~ 376 (389)
T 4gpa_A 374 KLV 376 (389)
T ss_dssp EEE
T ss_pred CeE
Confidence 875
No 7
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=7.8e-35 Score=320.13 Aligned_cols=279 Identities=18% Similarity=0.278 Sum_probs=228.4
Q ss_pred ccccCCeEEEEc-----cCCchhHHHHHcccCCCCccEEeeccCCCCCCC-CCCCeEEEeecCchhhHHHHHHHHHHcCC
Q 036525 3 LLNNAQVRVMLG-----PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-IRSPYFFRGALNDSSQVGAITAIIKAFGW 76 (783)
Q Consensus 3 Li~~~~V~aiIG-----p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~gw 76 (783)
|+++ +|.+||| |.+|..+.+++++++.+++|+|+++++++.+++ .++||+||+.|++..|+.+++++++++||
T Consensus 61 Li~~-~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw 139 (384)
T 3qek_A 61 LISS-QVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNW 139 (384)
T ss_dssp TGGG-TEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTC
T ss_pred HHHc-CceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCC
Confidence 7776 9999999 678889999999999999999999999999987 47899999999999999999999999999
Q ss_pred eEEEEEEEeCCcCCcchHHHHHHHhhCCceE-----------eEE-------EecC-CCCChhHHHHHHHHHhccCceEE
Q 036525 77 REAVPIYVDNQYGEAMIPSLTDALHAIDTRV-----------PYR-------SVIS-PLATDDQIEKELYKLFTMQTRVF 137 (783)
Q Consensus 77 ~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v-----------~~~-------~~i~-~~~~~~d~~~~l~~l~~~~~dvi 137 (783)
++|++||+|++||++..+.|++++++.|+++ .+. +.++ +..++.|+.+++.+|+++++|+|
T Consensus 140 ~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vi 219 (384)
T 3qek_A 140 NHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVI 219 (384)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEE
T ss_pred eEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999999999854 221 1111 11334589999999999999999
Q ss_pred EEEcChhhHHHHHHHHHHcCccccceEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHH
Q 036525 138 IVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATR 217 (783)
Q Consensus 138 i~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~ 217 (783)
++++.+.++..++++|+++||..++|+||+++.|.... ...+.++|++++..+ .+...++++||||+
T Consensus 220 i~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~--------~~~~~~~~~YdAV~ 286 (384)
T 3qek_A 220 ILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGS-----ALRYAPDGIIGLQLI--------NGKNESAHISDAVA 286 (384)
T ss_dssp EEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGG-----GGSSCCTTCEEEEET--------TTTCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCccCCeEEEEeccccccc-----cccccCCccEEEEEc--------CCCchhHHHHHHHH
Confidence 99999999999999999999988889999999876432 234678999999885 22345899999999
Q ss_pred HHHHHHHHhcccccCccccccCCCCccc-ccccCCCChHHHHHHHHcCcc-ccceeeEEEe-cCccccceEEEEEec-CC
Q 036525 218 ALAEAVEKAGITSFGFDKINVSSNATDL-EAFGISQNGPKLLQALSSTRF-KGLTGDYIFV-DGQLQSSAFEIINVN-NG 293 (783)
Q Consensus 218 ~la~Al~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~aL~~~~f-~g~~G~i~fd-~G~~~~~~~~I~~~~-~~ 293 (783)
++|+|++++........ ...+| .....|..+..|.+++.+++| +|++|+++|| +|++....|+|+|++ ++
T Consensus 287 ~~a~Al~~~~~~~~~~~------~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~ 360 (384)
T 3qek_A 287 VVAQAIHELFEMENITD------PPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRK 360 (384)
T ss_dssp HHHHHHHHHHTSSSCCC------CCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTE
T ss_pred HHHHHHHHHHhccCCCC------CCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCc
Confidence 99999999875432111 11223 234578899999999999998 9999999998 999877999999999 88
Q ss_pred cEEEEEEC
Q 036525 294 ARGVGFWT 301 (783)
Q Consensus 294 ~~~vg~w~ 301 (783)
++.||.|.
T Consensus 361 ~~~VG~w~ 368 (384)
T 3qek_A 361 LVQVGIFN 368 (384)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEe
Confidence 99999998
No 8
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=2.5e-35 Score=329.52 Aligned_cols=290 Identities=21% Similarity=0.277 Sum_probs=244.8
Q ss_pred ccccc-CCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCeEE
Q 036525 2 DLLNN-AQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREA 79 (783)
Q Consensus 2 ~Li~~-~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~v 79 (783)
+|+.+ ++|.+||||.+|..+.+++++++.++||+|+++++++.++++ ++||+||+.|++..++.+++++++++||++|
T Consensus 78 ~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v 157 (433)
T 4f11_A 78 DAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRV 157 (433)
T ss_dssp HHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEE
T ss_pred HHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEE
Confidence 46665 499999999999999999999999999999999999999974 7999999999999999999999999999999
Q ss_pred EEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 80 VPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 80 aii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
++||+|++||+...+.|++++++.|++|+..+.++ .|+.+++.+|+++++|+|++++...++..+++|++++|+.
T Consensus 158 ~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 232 (433)
T 4f11_A 158 GTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMY 232 (433)
T ss_dssp EEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecchhhHHHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999988876 2788999999999999999999999999999999999998
Q ss_pred ccceEEEEeCCccccc-----------ccCChhhhhcccceeEeeeCCC--C------------------CC-cccccch
Q 036525 160 NKGCVWIMTDGMTNLL-----------RTLEPSVIDSMQGVIDVRPYEN--P------------------SL-FDAELNI 207 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~--~------------------~~-~~~~~~~ 207 (783)
.++|+||++++....+ ........+.++|++++.++.. . ++ ++.+|+.
T Consensus 233 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~~~~~~ 312 (433)
T 4f11_A 233 GSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSK 312 (433)
T ss_dssp STTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTTSCCCT
T ss_pred CCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCCCCccc
Confidence 8889999999833221 1122345578899999987621 0 11 3456888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCccccccCCCCccccc--ccCCCChHHHHHHHHcCccccceeeEEEecCccccceE
Q 036525 208 IGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEA--FGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAF 285 (783)
Q Consensus 208 ~~~~aYDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~aL~~~~f~g~~G~i~fd~G~~~~~~~ 285 (783)
+++++|||++++|+|+++++...... ..+.++.. ...|.++++|+++|++++|+|++|+++|++|++. ..|
T Consensus 313 ~a~~~YDAv~~la~Al~~a~~~~~~~------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~-~~~ 385 (433)
T 4f11_A 313 FHGYAYDGIWVIAKTLQRAMETLHAS------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERM-GTI 385 (433)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHS------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEE-CEE
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhcc------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCcee-eeE
Confidence 99999999999999999997642110 00111221 1123458999999999999999999999999986 899
Q ss_pred EEEEec-CCcEEEEEECCC
Q 036525 286 EIINVN-NGARGVGFWTPE 303 (783)
Q Consensus 286 ~I~~~~-~~~~~vg~w~~~ 303 (783)
.|++++ +.++.||.|.+.
T Consensus 386 ~I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 386 KFTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp EEEEEETTEEEEEEEEETT
T ss_pred EEEEEECCceEEEEEEECC
Confidence 999999 779999999864
No 9
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=9.2e-35 Score=319.50 Aligned_cols=290 Identities=18% Similarity=0.254 Sum_probs=236.7
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|+++ +|.+||||.+|..+.++++++++++||+|+++ ++.++ ..+|+||+.|+ |+.+++++++++||++|++
T Consensus 62 ~l~~~-~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~i 133 (384)
T 3saj_A 62 SQFSK-GVYAIFGFYERRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVY 133 (384)
T ss_dssp HHHHT-TCSCEEECCCHHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEE
T ss_pred HHHhc-CeEEEECCCCHHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEE
Confidence 35654 89999999999999999999999999999984 44443 46788888876 8999999999999999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|| |++||+..++.|.+++++.|+||+..+.++ .++.||.++|.+|+++++|+|++++++.++..+++|++++||..+
T Consensus 134 i~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~ 210 (384)
T 3saj_A 134 IY-DADRGLSVLQRVLDTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGI 210 (384)
T ss_dssp EE-CSTTCSHHHHHHHHHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTC
T ss_pred EE-eCchhHHHHHHHHHHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCC
Confidence 99 779999999999999999999999887543 456799999999999999999999999999999999999999989
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC------------CCCCCccc--------ccchHHHHHHHHHHHHHH
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY------------ENPSLFDA--------ELNIIGLLAYDATRALAE 221 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~~--------~~~~~~~~aYDAv~~la~ 221 (783)
+|+||+++.+....+. ........|+.++.++ +|.++++. .|+.+++++|||++++++
T Consensus 211 ~~~~i~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~ 288 (384)
T 3saj_A 211 GYHYILANLGFMDIDL--NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAE 288 (384)
T ss_dssp EEEEEESSSCGGGSCH--HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCcccccH--HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHH
Confidence 9999999854332211 1233445667777665 12222221 357789999999999999
Q ss_pred HHHHhcccccCccccccCCCCcccccc--cCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEE
Q 036525 222 AVEKAGITSFGFDKINVSSNATDLEAF--GISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGV 297 (783)
Q Consensus 222 Al~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~v 297 (783)
|++++++......+. ....+|... ..|.+|.+|+++|++++|+|++|+++|| +|++....|+|++++ ++++.|
T Consensus 289 Al~~~~~~~~~~~~~---~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~V 365 (384)
T 3saj_A 289 AFQSLRRQRIDISRR---GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKI 365 (384)
T ss_dssp HHHHHHHTTCCCCCC---CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEE
T ss_pred HHHHHHhhccceecC---CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCccee
Confidence 999998753221111 112344432 4578999999999999999999999998 999988999999999 889999
Q ss_pred EEECCCCCCc
Q 036525 298 GFWTPEKGLT 307 (783)
Q Consensus 298 g~w~~~~~~~ 307 (783)
|.|++..++.
T Consensus 366 G~W~~~~gl~ 375 (384)
T 3saj_A 366 GYWNEDDKFV 375 (384)
T ss_dssp EEEETTTEEE
T ss_pred EEEcCCCCcc
Confidence 9999987765
No 10
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=4.3e-35 Score=318.55 Aligned_cols=279 Identities=16% Similarity=0.176 Sum_probs=224.1
Q ss_pred ccccCCeEEEEc-cCCchhHHH--HHcccCCCCccEEeeccCCC-CCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCe
Q 036525 3 LLNNAQVRVMLG-PEDSMPTNF--IIQPGNKSQVPILSFSATSP-SLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWR 77 (783)
Q Consensus 3 Li~~~~V~aiIG-p~~S~~~~a--v~~~~~~~~vP~Is~~a~s~-~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~ 77 (783)
++.+++|.|||| |.++..+.+ ++.+++.++||+|++++++| .++++ ++|||||+.|+|..|+.++++++++|||+
T Consensus 58 ~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~ 137 (364)
T 3qel_B 58 LMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWY 137 (364)
T ss_dssp HHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCe
Confidence 455668999885 444444555 89999999999999999988 89974 79999999999999999999999999999
Q ss_pred EEEEEEEeCCcCCcchHHHHHHHhhC--C--ceEeEEEecCCCCChhHHHHHH-HHHhccCceEEEEEcChhhHHHHHHH
Q 036525 78 EAVPIYVDNQYGEAMIPSLTDALHAI--D--TRVPYRSVISPLATDDQIEKEL-YKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 78 ~vaii~~d~~~G~~~~~~~~~~l~~~--g--~~v~~~~~i~~~~~~~d~~~~l-~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
+|++||+|+ . ....|.+++++. | +|+.....++.+.+..++...+ .+|++++++|||++++..++..++++
T Consensus 138 ~V~iI~~d~-~---g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~ 213 (364)
T 3qel_B 138 IFSIVTTYF-P---GYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEV 213 (364)
T ss_dssp EEEEEEESC-T---THHHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHH
T ss_pred EEEEEEeCC-c---cHHHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHH
Confidence 999999984 3 344566666554 4 4887777666555555788888 69999999999999999999999999
Q ss_pred HHHcCccccceEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcccccC
Q 036525 153 ANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFG 232 (783)
Q Consensus 153 a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a~~~~~~ 232 (783)
|.++||+.++|+||+++.+....+... .+..+|++++.++.+.. ...+++||||+++|+|++++.....
T Consensus 214 a~~~g~~~~~y~wI~t~~~~~~~~~~~---~~~~~g~~~~~~~~W~~-------~~~~~~yDaV~~~A~A~~~~~~~~~- 282 (364)
T 3qel_B 214 ANSVGLTGYGYTWIVPSLVAGDTDTVP---SEFPTGLISVSYDEWDY-------GLPARVRDGIAIITTAASDMLSEHS- 282 (364)
T ss_dssp HHTTTCSSTTCEEEECHHHHCSTTCCC---TTSCTTCEECCBCTTTS-------CHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHcCCCCCCeEEEEecccccCccccc---ccCCCceEEEeeccchh-------hHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 999999999999999997654333222 24668999988754321 3578999999999999998765321
Q ss_pred ccccccCCCCccccccc--CCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec--CCcEEEEEECC
Q 036525 233 FDKINVSSNATDLEAFG--ISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN--NGARGVGFWTP 302 (783)
Q Consensus 233 ~~~~~~~~~~~~~~~~~--~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~--~~~~~vg~w~~ 302 (783)
..+....+|.... .|.+|..|.++|++++|+|+ +++|+ +|++....|+|+|++ ++++.||.|+.
T Consensus 283 ----~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~ 351 (364)
T 3qel_B 283 ----FIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD 351 (364)
T ss_dssp ----CCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECS
T ss_pred ----CCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEECC
Confidence 1122234555443 57899999999999999998 88998 999998999999998 57999999983
No 11
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=3.8e-33 Score=312.57 Aligned_cols=276 Identities=16% Similarity=0.195 Sum_probs=228.4
Q ss_pred CCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC--CCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 7 AQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI--RSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 7 ~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~--~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
++|.+||||.+|..+.+++++++.+++|+|+++++++.++++ ++||+||+.|++..++.+++++++++||++|++|++
T Consensus 83 ~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 83 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 489999999999999999999999999999999999999974 699999999999999999999999999999999999
Q ss_pred eCCcCCc---chHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 85 DNQYGEA---MIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 85 d~~~G~~---~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|++||+. .++.|++++++.|+||+....++.+ ..|+...+.+|+ +++|||++++...++..++++++++||..+
T Consensus 163 d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 163 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK--DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS--CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred cCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCc--ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 9999999 9999999999999999988776533 347999999999 999999999999999999999999999888
Q ss_pred ceEEEEeC----------CcccccccCChhhhhcccceeEeeeC------------CCCCC-----ccc--ccchHHHHH
Q 036525 162 GCVWIMTD----------GMTNLLRTLEPSVIDSMQGVIDVRPY------------ENPSL-----FDA--ELNIIGLLA 212 (783)
Q Consensus 162 ~~~~i~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~-----~~~--~~~~~~~~a 212 (783)
.|+||+++ .|.... ..........+++.++..+ +|.+. ++. .++.+++.+
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGD-KHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGF 318 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSS-TTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCC-cccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHH
Confidence 89999988 343211 1111111234455554433 11111 221 356788999
Q ss_pred HHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec
Q 036525 213 YDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN 291 (783)
Q Consensus 213 YDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~ 291 (783)
||||+++|+|++++..... .+.++++|+++|++++|+|++|+++|| +|++. ..|+|++++
T Consensus 319 YdAv~~~A~Al~~~~~~~~------------------~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~ 379 (441)
T 1jdp_A 319 HDAILLYVLALHEVLRAGY------------------SKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMT 379 (441)
T ss_dssp HHHHHHHHHHHHHHHHTTC------------------CTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCC------------------CCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecc
Confidence 9999999999999863210 023688999999999999999999998 89985 899999996
Q ss_pred ---CC-cEEEEEECCCCC
Q 036525 292 ---NG-ARGVGFWTPEKG 305 (783)
Q Consensus 292 ---~~-~~~vg~w~~~~~ 305 (783)
+| ++.||.|.+..+
T Consensus 380 ~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 380 DVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp ETTTTEEEEEEEEETTTT
T ss_pred cCCCCceEEEEEEcCCCC
Confidence 44 899999998764
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.5e-32 Score=314.37 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=235.7
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+++|.|||||.+|..+.+++++++.+++|+|+++++++.|+++ ++|||||+.|++..|+.++++++++|||++|++|++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~ 194 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 194 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 6789999999999999999999999999999999999999984 799999999999999999999999999999999999
Q ss_pred eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcChhhHHHHHHHHHHcCccccce
Q 036525 85 DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKLPSLGSRIFEKANEIGLMNKGC 163 (783)
Q Consensus 85 d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~ 163 (783)
|++||+..++.|++++++.|+||+..+.++...+..|+.+++.+|++ +++||||+++...++..++++++++|+ ++
T Consensus 195 d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~ 271 (555)
T 2e4u_A 195 EGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SF 271 (555)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CC
T ss_pred eChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---Ce
Confidence 99999999999999999999999999988865567799999999964 799999999999999999999999996 78
Q ss_pred EEEEeCCcccccccCChhhhhcccceeEeeeC-----------------CCCCC----------ccc-------------
Q 036525 164 VWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-----------------ENPSL----------FDA------------- 203 (783)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~----------~~~------------- 203 (783)
+||++++|........ ...+.++|++++.++ ++++. ++.
T Consensus 272 ~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~ 350 (555)
T 2e4u_A 272 TWVASDGWGAQESIVK-GSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCD 350 (555)
T ss_dssp EEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------CCCC
T ss_pred EEEEeccccccchhhc-cchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCC
Confidence 9999998875432221 224567898888764 22211 110
Q ss_pred ----------ccchHHHHHHHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHH-HHHcCccc-----
Q 036525 204 ----------ELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQ-ALSSTRFK----- 267 (783)
Q Consensus 204 ----------~~~~~~~~aYDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-aL~~~~f~----- 267 (783)
.+..+++.+||||+++|+||++++....... ...|... ...++++|++ +|++++|+
T Consensus 351 ~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~-------~~~~~~~-~~~~~~~l~~~~L~~v~f~~~~~~ 422 (555)
T 2e4u_A 351 KHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQT-------TKLCDAM-KILDGKKLYKEYLLKIQFTAPFNP 422 (555)
T ss_dssp TTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTC-------SSCCGGG-TSCCHHHHHHHHTTCEEECCSSSC
T ss_pred CccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCC-------Ccccccc-CCCCcccccHHhHhceeecccccc
Confidence 1445788999999999999999975321100 0112221 1246889999 99999999
Q ss_pred -cceee-EEEe-cCccccceEEEEEec--C---CcEEEEEECC
Q 036525 268 -GLTGD-YIFV-DGQLQSSAFEIINVN--N---GARGVGFWTP 302 (783)
Q Consensus 268 -g~~G~-i~fd-~G~~~~~~~~I~~~~--~---~~~~vg~w~~ 302 (783)
|++|+ +.|| +|++. ..|+|++++ + .++.||.|.+
T Consensus 423 ~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~ 464 (555)
T 2e4u_A 423 NKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE 464 (555)
T ss_dssp CSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS
T ss_pred cCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc
Confidence 99997 9998 89975 899999995 3 2899999985
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=307.58 Aligned_cols=282 Identities=18% Similarity=0.215 Sum_probs=230.9
Q ss_pred CCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 7 AQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 7 ~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
++|.|||||.+|..+.+++++++.+++|+|+++++++.++++ ++||+||+.|++..|+.+++++++++||+||++|++|
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d 194 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE 194 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 589999999999999999999999999999999999999985 7999999999999999999999999999999999999
Q ss_pred CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHH-HHHhccCceEEEEEcChhhHHHHHHHHHHcCccccceE
Q 036525 86 NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKEL-YKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCV 164 (783)
Q Consensus 86 ~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l-~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~~ 164 (783)
++||+..++.|++++++.|+||+..+.++...++.|+.+++ ..|+++++||||+++...++..++++++++|+. ++
T Consensus 195 d~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~ 271 (479)
T 3sm9_A 195 GDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FT 271 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CE
T ss_pred chhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---EE
Confidence 99999999999999999999999999998766677999999 668889999999999999999999999999985 89
Q ss_pred EEEeCCcccccccCChhhhhcccceeEeeeC-----------------CCCCCcc-------------------------
Q 036525 165 WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-----------------ENPSLFD------------------------- 202 (783)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~~~------------------------- 202 (783)
||++++|........ .....+.|++++.++ +||++..
T Consensus 272 wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~ 350 (479)
T 3sm9_A 272 WVASDGWGAQESIIK-GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDK 350 (479)
T ss_dssp EEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCT
T ss_pred EEEechhhcCccccc-cccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCC
Confidence 999999975322121 123568899999877 2333210
Q ss_pred --------cccchHHHHHHHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHH-HHHHcCccccc----
Q 036525 203 --------AELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLL-QALSSTRFKGL---- 269 (783)
Q Consensus 203 --------~~~~~~~~~aYDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~aL~~~~f~g~---- 269 (783)
..........||||+++|+||+++....+... ...|... ...++.+|+ ++|++++|.+.
T Consensus 351 ~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~-------~~~c~~~-~~~~~~qL~~~~Lk~v~F~~~~~~~ 422 (479)
T 3sm9_A 351 HLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNT-------TKLCDAM-KILDGKKLYKDYLLKINFTAPFNPN 422 (479)
T ss_dssp TCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC-------SSCCHHH-HSCCHHHHHHHTGGGCCEECTTC--
T ss_pred ccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCC-------CcCCCCC-CCcChHHHHHHHhcceeeccccCcc
Confidence 00112346899999999999999865322110 1122221 123688999 99999999988
Q ss_pred ---eeeEEEe-cCccccceEEEEEec--CC---cEEEEEEC
Q 036525 270 ---TGDYIFV-DGQLQSSAFEIINVN--NG---ARGVGFWT 301 (783)
Q Consensus 270 ---~G~i~fd-~G~~~~~~~~I~~~~--~~---~~~vg~w~ 301 (783)
.+.+.|| +|+.. ..|+|+|++ ++ ++.||.|.
T Consensus 423 ~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 423 KDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ---CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES
T ss_pred ccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe
Confidence 4578998 99975 899999998 33 68899997
No 14
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=3.8e-33 Score=312.03 Aligned_cols=280 Identities=18% Similarity=0.190 Sum_probs=233.2
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+++.+++|.+||||.+|..+.+++++++.+++|+|+++++++.++++ ++||+||+.|++..++.+++++++++||++|+
T Consensus 71 ~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ 150 (435)
T 1dp4_A 71 DLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQA 150 (435)
T ss_dssp HHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEE
T ss_pred HHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEE
Confidence 45666799999999999999999999999999999999999999974 69999999999999999999999999999999
Q ss_pred EE------EEeCCcCCcchHHHHHHHhh-CCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHH
Q 036525 81 PI------YVDNQYGEAMIPSLTDALHA-IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKA 153 (783)
Q Consensus 81 ii------~~d~~~G~~~~~~~~~~l~~-~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a 153 (783)
+| ++|++|| ...+.+.+++++ .|+||+....++ .+..|+.+++.+|++ ++|+|++++...++..+++++
T Consensus 151 ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a 226 (435)
T 1dp4_A 151 LVLYADRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLA 226 (435)
T ss_dssp EEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHH
T ss_pred EEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHH
Confidence 99 7778888 556778888888 999999887654 345689999999998 999999999999999999999
Q ss_pred HHcCccccceEEEEeCCcccccc---------------cCChhhhhcccceeEeeeCCCCC-------------Cccc--
Q 036525 154 NEIGLMNKGCVWIMTDGMTNLLR---------------TLEPSVIDSMQGVIDVRPYENPS-------------LFDA-- 203 (783)
Q Consensus 154 ~~~g~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~-------------~~~~-- 203 (783)
+++|+..++|+||+++.|..... ...+...++++|++.+.++ ++. .++.
T Consensus 227 ~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 305 (435)
T 1dp4_A 227 LNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYK-EPDNPEYLEFLKQLKLLADKKF 305 (435)
T ss_dssp HHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEEC-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecC-CCCChhHHHHHHHHHHHhcCCC
Confidence 99999777799999997764320 0012344668898887763 221 1111
Q ss_pred -------ccchHHHHHHHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe
Q 036525 204 -------ELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV 276 (783)
Q Consensus 204 -------~~~~~~~~aYDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd 276 (783)
.++.+++++|||++++|+||+++..... .+.++++|+++|++++|+|++|+++||
T Consensus 306 ~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~------------------~~~~~~~l~~~l~~~~f~g~~G~v~fd 367 (435)
T 1dp4_A 306 NFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGG------------------TVTDGENITQRMWNRSFQGVTGYLKID 367 (435)
T ss_dssp CCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTC------------------CTTCHHHHHHTTTTEEEEETTEEEEEC
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCC------------------CCCCHHHHHHHHhCceeeccceeEEEC
Confidence 2677899999999999999999853210 012688999999999999999999998
Q ss_pred -cCccccceEEEEEec---CCcEEEEEECCCCC
Q 036525 277 -DGQLQSSAFEIINVN---NGARGVGFWTPEKG 305 (783)
Q Consensus 277 -~G~~~~~~~~I~~~~---~~~~~vg~w~~~~~ 305 (783)
+|++. ..|.|+++. +.++.||.|.+..+
T Consensus 368 ~~g~~~-~~~~i~~~~~~~g~~~~vg~~~~~~~ 399 (435)
T 1dp4_A 368 RNGDRD-TDFSLWDMDPETGAFRVVLNYNGTSQ 399 (435)
T ss_dssp TTSBBC-CCEEEEEECTTTCCEEEEEEECTTTC
T ss_pred CCCCcc-ceeEEEEecCCCCcEEEEEEecCCCc
Confidence 89986 799999994 44999999998754
No 15
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.8e-31 Score=302.27 Aligned_cols=286 Identities=19% Similarity=0.250 Sum_probs=232.6
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEE
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIY 83 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~ 83 (783)
.+++|.|||||.+|+.+.+++++++.+++|+|+++++++.++++ ++||+||+.|++..|+.+++++++++||+||++|+
T Consensus 125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~ 204 (496)
T 3ks9_A 125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH 204 (496)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEE
Confidence 46799999999999999999999999999999999999999984 79999999999999999999999999999999999
Q ss_pred EeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 84 VDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 84 ~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
+|++||+..++.|++++++.|+||+..+.++...+..|+.+++.+|+++ +++||++++...++..+++++++.|+..
T Consensus 205 ~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~- 283 (496)
T 3ks9_A 205 TEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG- 283 (496)
T ss_dssp ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-
T ss_pred eccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-
Confidence 9999999999999999999999999999888767778999999999985 8899999999999999999999999853
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC-----------------CCCCCcc--------------c-------
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-----------------ENPSLFD--------------A------- 203 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~~~--------------~------- 203 (783)
.+.||++++|........ .....+.|++++.++ +||++.. .
T Consensus 284 k~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~ 362 (496)
T 3ks9_A 284 EFSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPN 362 (496)
T ss_dssp CCEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CC
T ss_pred cEEEEEechhcccccccc-ccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCcccccc
Confidence 367999999975322222 233568899998876 2332110 0
Q ss_pred ---------------ccchHHHHHHHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCcccc
Q 036525 204 ---------------ELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKG 268 (783)
Q Consensus 204 ---------------~~~~~~~~aYDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g 268 (783)
.........|+||+++|+||+++....+... ...|..... .++.+|++.|++++|.+
T Consensus 363 ~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~-------~~~c~~~~~-~~~~qL~~~Lk~v~f~~ 434 (496)
T 3ks9_A 363 FKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH-------VGLCDAMKP-IDGSKLLDFLIKSSFIG 434 (496)
T ss_dssp CSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC-------SSCCGGGSS-CCHHHHHHHHHTCEEEC
T ss_pred ccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCC-------CCCCcCCCC-CCHHHHHHHHHhcCCcC
Confidence 0011224699999999999999875322110 122332222 26889999999999999
Q ss_pred cee-eEEEe-cCccccceEEEEEec---CC---cEEEEEEC
Q 036525 269 LTG-DYIFV-DGQLQSSAFEIINVN---NG---ARGVGFWT 301 (783)
Q Consensus 269 ~~G-~i~fd-~G~~~~~~~~I~~~~---~~---~~~vg~w~ 301 (783)
.+| .+.|| +|+.. ..|+|+|++ ++ ++.||.|.
T Consensus 435 ~~g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 474 (496)
T 3ks9_A 435 VSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWH 474 (496)
T ss_dssp TTSCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEE
T ss_pred CCCCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEe
Confidence 999 58998 99975 799999997 33 68999996
No 16
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.97 E-value=3.5e-32 Score=307.43 Aligned_cols=284 Identities=21% Similarity=0.309 Sum_probs=203.1
Q ss_pred CCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC-CCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 7 AQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-IRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 7 ~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
++|.|||||.+|+.+.+++++++.+++|+|+++++++.+++ .++|||||+.|++..|+.+++++++++||+||++|++|
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d 195 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 195 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence 78999999999999999999999999999999999999998 47999999999999999999999999999999999999
Q ss_pred CCcCCcchHHHHHHHhh-CCceEeEEEecCCCCChh--HHHHHHHHHh-ccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 86 NQYGEAMIPSLTDALHA-IDTRVPYRSVISPLATDD--QIEKELYKLF-TMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 86 ~~~G~~~~~~~~~~l~~-~g~~v~~~~~i~~~~~~~--d~~~~l~~l~-~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
++||+...+.|++++++ .|+||+..+.++...+.. |+..++.+|+ +++|||||+++...++..+++++++.|+..
T Consensus 196 ~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~- 274 (481)
T 3mq4_A 196 GSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG- 274 (481)
T ss_dssp CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC-----------
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc-
Confidence 99999999999999985 799999988887654444 7888999998 589999999999999999999999999853
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC-----------------CCCCCcc-------------c--------
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-----------------ENPSLFD-------------A-------- 203 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~~~-------------~-------- 203 (783)
+++||++++|........ .....+.|++++.++ +||++.. .
T Consensus 275 ~~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~ 353 (481)
T 3mq4_A 275 HFLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKED 353 (481)
T ss_dssp CCCEEEC------------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC---------
T ss_pred ceEEEEECcccccccccc-ccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCccccccc
Confidence 388999999975432222 234668899998877 2332210 0
Q ss_pred -----------------ccchHHHHHHHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCcc
Q 036525 204 -----------------ELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRF 266 (783)
Q Consensus 204 -----------------~~~~~~~~aYDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f 266 (783)
.........||||+++|+||+++....+... ...|..... .++.+|++.|++++|
T Consensus 354 ~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~-------~~~c~~~~~-~~~~qL~~~Lk~v~F 425 (481)
T 3mq4_A 354 TDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY-------RGVCPEMEQ-AGGKKLLKYIRNVNF 425 (481)
T ss_dssp ---CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHT-SCHHHHHHHHHTCEE
T ss_pred cCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC-------CCCCCCCCC-cCHHHHHHHHhccee
Confidence 0013345799999999999999875322110 112322212 267899999999999
Q ss_pred cccee-eEEEe-cCccccceEEEEEec---CC---cEEEEEEC
Q 036525 267 KGLTG-DYIFV-DGQLQSSAFEIINVN---NG---ARGVGFWT 301 (783)
Q Consensus 267 ~g~~G-~i~fd-~G~~~~~~~~I~~~~---~~---~~~vg~w~ 301 (783)
.+.+| .+.|| +|++. ..|+|+|++ ++ ++.||.|.
T Consensus 426 ~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 426 NGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred ecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 99999 79998 89975 899999997 22 57899996
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.97 E-value=6.3e-30 Score=279.58 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=221.6
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|+.+++|.+||||.+|..+.++++++++++||+|+++++++.++.. .||+||+.+++..++.+++++++..||++|++
T Consensus 66 ~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vai 144 (371)
T 4f06_A 66 ELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAI 144 (371)
T ss_dssp HHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEE
Confidence 57888999999999999999999999999999999999999988753 69999999999999999999999999999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC-hhhHHHHHHHHHHcCccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL-PSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~-~~~~~~~~~~a~~~g~~~ 160 (783)
|++|++||+...+.|++.+++.|++|+....++.+.+ ||++++.+|++++||+|++... +.+...+++++++.|+..
T Consensus 145 i~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~--d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~ 222 (371)
T 4f06_A 145 AVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLSTT--DFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKA 222 (371)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC--CCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTT
T ss_pred EcCCcccchhHHHHHHHHHHhcCCceEEEEecCcccc--cHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999886644 9999999999999999987765 567888999999999977
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeeeC--------------CCCCCcc--cccchHHHHHHHHHHHHHHHHH
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY--------------ENPSLFD--AELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~--~~~~~~~~~aYDAv~~la~Al~ 224 (783)
..+.++.++....... + ....+..+|++...++ .|++.++ .+|+.++..+|||++++++|++
T Consensus 223 ~~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~ 300 (371)
T 4f06_A 223 GGVKLMSTGDVVTEPD-L-PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIE 300 (371)
T ss_dssp TTCEEEEEGGGGCGGG-H-HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEecccCCHHH-H-HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHH
Confidence 6666666654332211 1 2334567888887765 2333333 3578899999999999999999
Q ss_pred Hh-cccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec
Q 036525 225 KA-GITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN 291 (783)
Q Consensus 225 ~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~ 291 (783)
++ ++. ++++++++|++++|+|++|+++|| +++.....+.|.+++
T Consensus 301 ~~ag~~-----------------------d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 301 ATSGKS-----------------------DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp HTTTSC-----------------------CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred HhcCCC-----------------------CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 64 333 679999999999999999999998 665555778888887
No 18
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.96 E-value=9.1e-30 Score=277.75 Aligned_cols=270 Identities=17% Similarity=0.243 Sum_probs=232.1
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHH-HHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAII-KAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l-~~~gw~~va 80 (783)
+|+++++|.+||||.+|..+.++++++++.+||+|++.++++.+++ .+||+||+.+++..++.++++++ +++||++|+
T Consensus 75 ~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 153 (366)
T 3td9_A 75 RAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVV 153 (366)
T ss_dssp HHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 4667778999999999999999999999999999999988888865 57999999999999999999999 558999999
Q ss_pred EEEE-eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 81 PIYV-DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 81 ii~~-d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
+||. +++||....+.+++++++.|++++... ++.+ ..|+...+.++++.++|+|++.+...++..+++++++.|+.
T Consensus 154 ii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~ 230 (366)
T 3td9_A 154 VFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFT 230 (366)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCC
Confidence 9986 789999999999999999999998887 7654 44899999999999999999999999999999999999987
Q ss_pred ccceEEEEeCCcccccccCChhhhhcccceeEeeeC---------------CCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 160 NKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY---------------ENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
.+ |++++++... . +.....+..+|++...++ .|.++++..|+.+++.+|||++++++|++
T Consensus 231 ~~---~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~~~~~yda~~~~~~al~ 305 (366)
T 3td9_A 231 GY---ILAGDGADAP-E-LIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGKEPAALNALGYDAYMVLLDAIE 305 (366)
T ss_dssp SE---EEECGGGCST-H-HHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ce---EEeeCCcCCH-H-HHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHHHH
Confidence 65 7777766431 1 112334577888887754 23334567789999999999999999999
Q ss_pred HhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCc-cccceeeEEEe-cCccccceEEEEEec-CCcEEEEEEC
Q 036525 225 KAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTR-FKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWT 301 (783)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~-f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~w~ 301 (783)
++++. ++++|+++|++++ |+|++|+++|+ +|++. ..+.|++++ +.++.++.|+
T Consensus 306 ~ag~~-----------------------~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~ 361 (366)
T 3td9_A 306 RAGSF-----------------------DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVIN 361 (366)
T ss_dssp HHTSC-----------------------CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEEC
T ss_pred HhCCC-----------------------CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecC
Confidence 99854 5799999999998 99999999998 89986 569999999 7799999998
Q ss_pred CCC
Q 036525 302 PEK 304 (783)
Q Consensus 302 ~~~ 304 (783)
+..
T Consensus 362 ~~~ 364 (366)
T 3td9_A 362 PDD 364 (366)
T ss_dssp GGG
T ss_pred hhh
Confidence 764
No 19
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.96 E-value=7.8e-30 Score=280.52 Aligned_cols=278 Identities=15% Similarity=0.125 Sum_probs=228.6
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC-CCCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-IRSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+|+++++|.+||||.+|..+.++++++++.+||+|++.++++.++. ..+||+||+.|++..++.++++++.++||++|+
T Consensus 67 ~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 146 (387)
T 3i45_A 67 ELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWA 146 (387)
T ss_dssp HHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEE
T ss_pred HHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEE
Confidence 4666679999999999999999999999999999999998888874 579999999999999999999999999999999
Q ss_pred EEEEeCCcCCcchHHHHHHHhhC--CceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAI--DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~--g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
+|++|++||+...+.|++++++. |++++....++.+. .|+.+.+.+|++++||+|++++...++..+++++++.|+
T Consensus 147 ii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~--~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~ 224 (387)
T 3i45_A 147 TIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYK--LDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGL 224 (387)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTS
T ss_pred EEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCC--cCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCC
Confidence 99999999999999999999998 89998887776543 489999999999999999999999999999999999998
Q ss_pred cccceEEEEeCCcccccccCChhhhhcccceeEeee-C-------------CCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 159 MNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRP-Y-------------ENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
... +++.+..+... ..+.....+..+|++.... + +|.++++..|+.+++.+|||++++++|++
T Consensus 225 ~~~--~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~Yda~~~~a~Al~ 301 (387)
T 3i45_A 225 FAG--RQVVSMLTGEP-EYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNTLTAMAVAFE 301 (387)
T ss_dssp STT--CEEEEEEEESH-HHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC--CeEEeecCCCh-HHHHHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHH
Confidence 433 34443322111 1111111235678776532 2 33444567789999999999999999999
Q ss_pred HhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec--CCcEEEEEEC
Q 036525 225 KAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN--NGARGVGFWT 301 (783)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~--~~~~~vg~w~ 301 (783)
++++. ++++|+++|++++|+|++|+++|+ ++........|.+++ ++...++.|.
T Consensus 302 ~ag~~-----------------------~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~ 358 (387)
T 3i45_A 302 KAGGT-----------------------ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWR 358 (387)
T ss_dssp HHTSC-----------------------CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEE
T ss_pred HhCCC-----------------------CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeE
Confidence 99854 579999999999999999999997 344445677788876 6788899998
Q ss_pred CCCCCc
Q 036525 302 PEKGLT 307 (783)
Q Consensus 302 ~~~~~~ 307 (783)
+.++..
T Consensus 359 ~~~~~~ 364 (387)
T 3i45_A 359 YVDGGS 364 (387)
T ss_dssp EECGGG
T ss_pred EeCchh
Confidence 766553
No 20
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.96 E-value=1.6e-29 Score=276.85 Aligned_cols=260 Identities=13% Similarity=0.160 Sum_probs=224.7
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC-CCCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-IRSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+|+++++|.+||||.+|..+.++++++++++||+|+++++++.++. .++||+||+.+++..++.++++++.++||++|+
T Consensus 65 ~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 144 (375)
T 3i09_A 65 EWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWF 144 (375)
T ss_dssp HHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEE
Confidence 4667689999999999999999999999999999999999888886 479999999999999999999999999999999
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+|++|++||+...+.|++.+++.|++|+....++.+ ..|+.+.+.++++.+||+|++.+...++..++++++++|+..
T Consensus 145 ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~ 222 (375)
T 3i09_A 145 FLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLS--ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITK 222 (375)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGG
T ss_pred EEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCC--CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999988887755 348999999999999999999999999999999999999977
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeeeC-------------CCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-------------ENPSLFDAELNIIGLLAYDATRALAEAVEKAG 227 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a~ 227 (783)
+. .+++.+.+..... ....+..+|++...++ +|.++++..|+.+++.+|||++++++|+++++
T Consensus 223 ~~-~i~g~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~~~~Al~~ag 298 (375)
T 3i09_A 223 TM-KLAALLMFINDVH---ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKKMPSSLQAADYSSVTTYLKAVQAAG 298 (375)
T ss_dssp TC-EEEESSCCHHHHH---HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred Cc-eEEecccchhhHh---hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 65 4555444433221 1122567888877665 34445567899999999999999999999998
Q ss_pred ccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec
Q 036525 228 ITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN 291 (783)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~ 291 (783)
+. ++++|+++|++++|+|++|.++|+ +|++. ..+.|++++
T Consensus 299 ~~-----------------------~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~ 339 (375)
T 3i09_A 299 ST-----------------------DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVK 339 (375)
T ss_dssp SC-----------------------CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEEC
T ss_pred CC-----------------------CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEe
Confidence 54 579999999999999999999998 89986 578899987
No 21
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.96 E-value=3.5e-29 Score=274.54 Aligned_cols=261 Identities=14% Similarity=0.088 Sum_probs=223.2
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC-CCCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-IRSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+|+++++|.+||||.+|..+.++++++++++||+|+++++++.++. .++||+||+.+++..++.++++++.++||++|+
T Consensus 67 ~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 146 (379)
T 3n0w_A 67 EWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWF 146 (379)
T ss_dssp HHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEE
Confidence 4667689999999999999999999999999999999999999886 469999999999999999999999999999999
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+|++|++||+...+.|++++++.|++|+....++.+. .|+.+.+.++++.++|+|++.+.+.++..++++++++|+..
T Consensus 147 ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~ 224 (379)
T 3n0w_A 147 LMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET--QDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPS 224 (379)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC--CCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSC
T ss_pred EEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999888887553 48999999999999999999999999999999999999976
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeeeC-------------CCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-------------ENPSLFDAELNIIGLLAYDATRALAEAVEKAG 227 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a~ 227 (783)
+.+ ++.+.++... . +.....+..+|++...++ +|.++++..|+.+++.+|||++++++|+++++
T Consensus 225 ~~~-~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~~~~~Yda~~~~~~Al~~ag 301 (379)
T 3n0w_A 225 KTQ-KVGGMIDILT-D-VKSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGKMPTNNQAGGYSAALQYLKAVNAIG 301 (379)
T ss_dssp SSC-EEECCBCCHH-H-HHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCc-EEEecccchH-H-HHhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 543 4444433321 1 111122567888877665 34445567889999999999999999999998
Q ss_pred ccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceee-EEEe-cCccccceEEEEEec
Q 036525 228 ITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGD-YIFV-DGQLQSSAFEIINVN 291 (783)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~-i~fd-~G~~~~~~~~I~~~~ 291 (783)
+. ++++|+++|++++|+++.|. ++|+ +|++. ..+.|++++
T Consensus 302 ~~-----------------------~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~ 343 (379)
T 3n0w_A 302 SK-----------------------DPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAK 343 (379)
T ss_dssp CC-----------------------CHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEEC
T ss_pred CC-----------------------CHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEE
Confidence 54 57999999999999999885 8998 89875 788899987
No 22
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.96 E-value=3.1e-29 Score=272.34 Aligned_cols=270 Identities=17% Similarity=0.169 Sum_probs=228.9
Q ss_pred ccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHH-HcCCeEEEE
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIK-AFGWREAVP 81 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~gw~~vai 81 (783)
|++ ++|.+||||.+|..+.++++++++.+||+|++.++++.+++..++|+||+.+++..++.++++++. ++||++|++
T Consensus 65 l~~-~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iai 143 (356)
T 3ipc_A 65 FVA-DGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAI 143 (356)
T ss_dssp HHH-TTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHH-CCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 455 699999999999999999999999999999999999988877789999999999999999999774 569999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|+.+++||+...+.+++++++.|++++....++.+ ..|+.+.+.++++.++|+|++++...++..+++++++.|+..+
T Consensus 144 i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~ 221 (356)
T 3ipc_A 144 IHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVG--DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK 221 (356)
T ss_dssp EECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE
T ss_pred EeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc
Confidence 99999999999999999999999999887777644 3489999999999999999999999999999999999999766
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC-------------CCCCCcccccchHHHHHHHHHHHHHHHHHHhcc
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-------------ENPSLFDAELNIIGLLAYDATRALAEAVEKAGI 228 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a~~ 228 (783)
|++++++.... +........+|++...++ .|.++ +.+|+.++..+|||++++++|++++++
T Consensus 222 ---~~~~~~~~~~~--~~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~~p~~~~~~~yda~~~~~~al~~ag~ 295 (356)
T 3ipc_A 222 ---LVSGDGIVSNE--LASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-GFNPEAYTLYSYAAMQAIAGAAKAAGS 295 (356)
T ss_dssp ---EEECGGGCSHH--HHHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-TCCCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred ---EEEeccccCHH--HHHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-CCCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 77777654321 111234567888777655 23334 567889999999999999999999985
Q ss_pred cccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-C--C-cEEEEEECCC
Q 036525 229 TSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-N--G-ARGVGFWTPE 303 (783)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~--~-~~~vg~w~~~ 303 (783)
. ++++|+++|++.+|+|++|+++|+ +|++....+.|++++ + | |+.+..|.+.
T Consensus 296 ~-----------------------~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 V-----------------------EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp C-----------------------CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred C-----------------------CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 4 579999999999999999999998 899887789999998 5 6 8888888665
Q ss_pred C
Q 036525 304 K 304 (783)
Q Consensus 304 ~ 304 (783)
+
T Consensus 353 ~ 353 (356)
T 3ipc_A 353 H 353 (356)
T ss_dssp -
T ss_pred c
Confidence 3
No 23
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.96 E-value=2.3e-28 Score=267.51 Aligned_cols=271 Identities=14% Similarity=0.174 Sum_probs=232.2
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+|+++++|.+||||.+|..+.++++++++.+||+|++.++++.+++. .+||+||+.+++..++.++++++.++||++|+
T Consensus 76 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia 155 (375)
T 4evq_A 76 KLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAV 155 (375)
T ss_dssp CCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEE
Confidence 57777799999999999999999999999999999999998888864 58999999999999999999999999999999
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+|+.|+++|+...+.+++++++.|++++....++.+. .|+...+.++++.++|+|++.+...++..+++++++.|+..
T Consensus 156 ~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~v 233 (375)
T 4evq_A 156 TVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPD--VEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGI 233 (375)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCC
T ss_pred EEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCC--ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999998887776543 48889999999999999999999999999999999999875
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeeeC--------------CCCCCcccccchHHHHHHHHHHHHHHHHHHh
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY--------------ENPSLFDAELNIIGLLAYDATRALAEAVEKA 226 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a 226 (783)
+ |++++ |... ..+ ....+..+|++...++ .|.++++..|+.+++.+|||++++++|++++
T Consensus 234 p---~~~~~-~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~yda~~~~~~al~~~ 307 (375)
T 4evq_A 234 P---LWGPG-FLTD-GVE-AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKIPPDVFAVQGWDAGQLLDAGVKAV 307 (375)
T ss_dssp C---EEEEG-GGTT-TTH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred e---EEecC-cCCH-HHH-HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 5 66654 4211 112 2334678899888765 2334456788999999999999999999998
Q ss_pred cccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEEEEECC
Q 036525 227 GITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTP 302 (783)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~w~~ 302 (783)
+.. +.++++|+++|++++|+|++|+++|+ +|++. ..+.|++++ ++++.++.+.+
T Consensus 308 g~~---------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 308 GGD---------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp TTC---------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred CCC---------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 752 12579999999999999999999998 89885 689999999 77888888754
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.96 E-value=9.9e-29 Score=268.61 Aligned_cols=271 Identities=17% Similarity=0.165 Sum_probs=227.8
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|+++++|.+||||.+|..+.++++++++.+||+|++.++++.+++.. +|+||+.+++..++.++++++...||++|++
T Consensus 66 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 144 (358)
T 3hut_A 66 AFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAV 144 (358)
T ss_dssp HHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEE
T ss_pred HHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEE
Confidence 356578999999999999999999999999999999998888887654 9999999999999999999998889999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|+.+++||+...+.+++++++.|++++....++.+ ..|+.+.+.++++.++|+|++.+...++..+++++++.|+..+
T Consensus 145 i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p 222 (358)
T 3hut_A 145 IGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP 222 (358)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC
T ss_pred EecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999887777654 3488899999999999999999999999999999999999766
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC--------------CCCCCcccccchHHHHHHHHHHHHHHHHHHhc
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY--------------ENPSLFDAELNIIGLLAYDATRALAEAVEKAG 227 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a~ 227 (783)
|++.+++... . +.....+..+|++...++ .|.++++..|+.+++.+|||++++++|+++++
T Consensus 223 ---~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~yda~~~~~~al~~ag 297 (358)
T 3hut_A 223 ---VYGSSALYSP-K-FIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGAIPTLFAAHGYDAVGIMLAAVGRAG 297 (358)
T ss_dssp ---EEECGGGCSH-H-HHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---EEecCcccCH-H-HHHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 8887766432 1 112334568898888765 23344566889999999999999999999998
Q ss_pred ccccCccccccCCCCcccccccCCCChHH-HHHHHHcC-ccccceeeEEEe-cCccccceEEEEEec-CCcEEEEEECCC
Q 036525 228 ITSFGFDKINVSSNATDLEAFGISQNGPK-LLQALSST-RFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPE 303 (783)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~aL~~~-~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~w~~~ 303 (783)
+. ++++ ++++|+++ +|+|++|+++|+ +|++....+.|++++ +.++.+....+.
T Consensus 298 ~~-----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 298 PE-----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp TT-----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred CC-----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 55 4677 99999999 899999999998 888756788999998 557766665554
No 25
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.96 E-value=2.3e-28 Score=266.78 Aligned_cols=261 Identities=17% Similarity=0.202 Sum_probs=222.2
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|+++++|.+||||.+|..+.++++++++.+||+|+++++++.+++. +||+||+.+++..++.++++++.++||++|++
T Consensus 66 ~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 144 (368)
T 4eyg_A 66 ELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVAT 144 (368)
T ss_dssp HHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEE
Confidence 46666899999999999999999999999999999999888888765 89999999999999999999999999999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|+.|+.+|+...+.|++++++.|++++....++.+. .|+.+.+.+|++.++|+|++.+...++..+++++++.|+..+
T Consensus 145 i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~ 222 (368)
T 4eyg_A 145 LTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN--PDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKS 222 (368)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS--CCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGT
T ss_pred EecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC--CcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcC
Confidence 999999999999999999999999999888777543 489999999999999999998888899999999999999755
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC--------------CCCCCc-ccccchHHHHHHHHHHHHHHHHHHh
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY--------------ENPSLF-DAELNIIGLLAYDATRALAEAVEKA 226 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~-~~~~~~~~~~aYDAv~~la~Al~~a 226 (783)
++.|++++++.... .+. ...+..+|++...++ .| +++ +..|+.+++.+|||++++++|++++
T Consensus 223 ~v~~~~~~~~~~~~-~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~p~~~~~~~yda~~~~~~al~~~ 299 (368)
T 4eyg_A 223 GIKVIGPGDVMDDD-LLN-SMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQRPGFMAVGGYDGIHLVFEALKKT 299 (368)
T ss_dssp TCEEEEETTTTCHH-HHT-TCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEecCcccCHH-HHH-hhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 56688877443211 111 223567888877665 34 445 5678999999999999999999999
Q ss_pred cccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe--cCccccceEEEEEec
Q 036525 227 GITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV--DGQLQSSAFEIINVN 291 (783)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd--~G~~~~~~~~I~~~~ 291 (783)
+.. .++++|+++|++++|+|++|+++|+ +|+. ...+.|++++
T Consensus 300 g~~----------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~ 343 (368)
T 4eyg_A 300 GGK----------------------ADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVE 343 (368)
T ss_dssp TTC----------------------CSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEE
T ss_pred CCC----------------------CCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEE
Confidence 732 1578999999999999999999998 5554 4678888887
No 26
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.95 E-value=8.4e-29 Score=275.33 Aligned_cols=277 Identities=13% Similarity=0.055 Sum_probs=221.1
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCC-----C-CCCCeEEEeecCchhhHHHHHHHHHHc-
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLT-----S-IRSPYFFRGALNDSSQVGAITAIIKAF- 74 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls-----~-~~~~~~fr~~p~~~~~~~ai~~~l~~~- 74 (783)
+|+.+++|.+||||.+|..+.++++++++++||+|++++ ++.++ + ..++|+||+.|++..++.+++++++++
T Consensus 77 ~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~ 155 (419)
T 3h5l_A 77 RLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIE 155 (419)
T ss_dssp HHHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHH
Confidence 577778999999999999999999999999999999753 33222 2 368999999999999999999999875
Q ss_pred -------CCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC-hhhH
Q 036525 75 -------GWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL-PSLG 146 (783)
Q Consensus 75 -------gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~-~~~~ 146 (783)
||++|++|++|++||+...+.|++.+++.|++|+..+.++.+ +.|+.+++.+|+++++|+|++.+. +.++
T Consensus 156 ~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~ 233 (419)
T 3h5l_A 156 DNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP--VSDWGPTLAKLRADPPAVIVVTHFYPQDQ 233 (419)
T ss_dssp HTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS--CSCCHHHHHHHHHSCCSEEEECCCCHHHH
T ss_pred hhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC--CccHHHHHHHHHhcCCCEEEEccccCchH
Confidence 899999999999999999999999999999999998888754 459999999999999999999876 5789
Q ss_pred HHHHHHHHHcCccccceEEEEeCCcccccccCChhhhhcccceeEeeeC-------------CCCCCcccccc-hHHHHH
Q 036525 147 SRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-------------ENPSLFDAELN-IIGLLA 212 (783)
Q Consensus 147 ~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------~~~~~~~~~~~-~~~~~a 212 (783)
..+++++++.|+. ..|++++++... . +.....+..+|++...++ +|.++++..|. .+++.+
T Consensus 234 ~~~~~~~~~~g~~---~~~~~~~~~~~~-~-~~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~~a~~~ 308 (419)
T 3h5l_A 234 ALFMNQFMTDPTN---SLVYLQYGASLA-A-FRDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGDLSSTASGCQT 308 (419)
T ss_dssp HHHHHHHTTSCCS---CEEEECSGGGSH-H-HHHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHHcCCC---ceEEecCCCCcH-H-HHHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCCCCCcchhHHH
Confidence 9999999999983 347777766532 1 112334667888776554 34444556665 699999
Q ss_pred HHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccc----------
Q 036525 213 YDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQ---------- 281 (783)
Q Consensus 213 YDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~---------- 281 (783)
|||++++++|++++++.... +.+.++++|+++|++++|+|++|.++|+ +|+..
T Consensus 309 Yda~~~~~~a~~~a~~~~~~----------------g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~ 372 (419)
T 3h5l_A 309 YSALYAYSIAAALAGGPGAP----------------YDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDP 372 (419)
T ss_dssp HHHHHHHHHHHHHTTSCCCT----------------TCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCT
T ss_pred HHHHHHHHHHHHHhcCCccC----------------CCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCc
Confidence 99999999999999863110 1112578999999999999999999998 78743
Q ss_pred --cceEEEEEec-CCcEEEEEECC
Q 036525 282 --SSAFEIINVN-NGARGVGFWTP 302 (783)
Q Consensus 282 --~~~~~I~~~~-~~~~~vg~w~~ 302 (783)
.....|++++ +.++.+-.|..
T Consensus 373 ~~~~~~~i~q~q~g~~~~~~V~P~ 396 (419)
T 3h5l_A 373 SLGMPHIFSQIFDKAEDGVLIAPA 396 (419)
T ss_dssp TSSEECEEEECCCTTSCCEEEEST
T ss_pred cccCCceEEEeeCCceeeEEECCc
Confidence 1245688888 55633345654
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.95 E-value=8.4e-28 Score=259.83 Aligned_cols=260 Identities=20% Similarity=0.220 Sum_probs=219.7
Q ss_pred ccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHH-HcCCeEEEE
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIK-AFGWREAVP 81 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~gw~~vai 81 (783)
|++ ++|.+||||.+|..+.++++++++.++|+|++.++++.+++..++++||+.+++..++.++++++. ++||++|++
T Consensus 65 l~~-~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~ 143 (346)
T 1usg_A 65 IVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAI 143 (346)
T ss_dssp HHH-TTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEE
T ss_pred HHh-CCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEE
Confidence 444 599999999999999999999999999999998888888765589999999999999999999985 579999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|+.++.||+...+.+++++++.|++++....++.+ ..|+.+.+.+|++.+||+|++.+...++..+++++++.|+..+
T Consensus 144 i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~ 221 (346)
T 1usg_A 144 IHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ 221 (346)
T ss_dssp EECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred EECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe
Confidence 99999999999999999999999999877766644 3478889999999999999999988899999999999998766
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC-------------CCCCCcccccchHHHHHHHHHHHHHHHHHHhcc
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-------------ENPSLFDAELNIIGLLAYDATRALAEAVEKAGI 228 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a~~ 228 (783)
|++++++... ... ....+..+|++.+.++ .|.+.++..|+.++..+|||++++++|++++++
T Consensus 222 ---~~~~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~yda~~~~~~al~~~g~ 296 (346)
T 1usg_A 222 ---FMGPEGVGNA-SLS-NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGS 296 (346)
T ss_dssp ---EEECGGGCCT-THH-HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ---EEecCCCCcH-HHH-HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhCC
Confidence 8888766532 111 1234567888887654 233345567888999999999999999999974
Q ss_pred cccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CC
Q 036525 229 TSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NG 293 (783)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~ 293 (783)
. ++++|+++|++.+|+|++|+++|+ +|++....|.|++++ +|
T Consensus 297 ~-----------------------~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G 340 (346)
T 1usg_A 297 D-----------------------EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADG 340 (346)
T ss_dssp C-----------------------CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTS
T ss_pred C-----------------------CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCC
Confidence 3 578999999999999999999998 899876788999987 55
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.95 E-value=3e-28 Score=268.38 Aligned_cols=279 Identities=13% Similarity=0.081 Sum_probs=228.9
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH-cCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA-FGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~gw~~va 80 (783)
+|+++++|.+||| .+|..+.++++++++.+||+|+++++++......++|+||+.+++..++.++++++.. +||++|+
T Consensus 69 ~li~~~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 147 (392)
T 3lkb_A 69 EAVDRFKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVA 147 (392)
T ss_dssp HHHHTTCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHhhcCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEE
Confidence 4666679999999 6899999999999999999999876544333356899999999999999999999976 6999999
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+|+.+++||+...+.+++++++.|++++....++.+ ..|+.+.+.++++.+||+|++++...++..+++++++.|+..
T Consensus 148 ii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~ 225 (392)
T 3lkb_A 148 LVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM 225 (392)
T ss_dssp EEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999988877654 448999999999999999999999999999999999999876
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeeeC--------------CCCCCcccccchH----HHHHHHHHHHHHHH
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY--------------ENPSLFDAELNII----GLLAYDATRALAEA 222 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~----~~~aYDAv~~la~A 222 (783)
+ |++++++... ... .......+|++...++ +|.++++..|+.+ +..+|||++++++|
T Consensus 226 ~---~~~~~~~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~~~yda~~~~~~a 300 (392)
T 3lkb_A 226 R---HLGAHYTGGP-DLI-ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPENFIESVNYTNGMLAAAIAVEA 300 (392)
T ss_dssp E---EEECGGGCSH-HHH-HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCHHHHTCHHHHHHHHHHHHHHHH
T ss_pred e---EEEecCcccH-HHH-HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCcccccchhHHHHHHHHHHHHHH
Confidence 5 7776654321 111 2234568898887765 2333455566655 78999999999999
Q ss_pred HHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCc----cc-------cceeeEEEe-cCccccceEEEEEe
Q 036525 223 VEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTR----FK-------GLTGDYIFV-DGQLQSSAFEIINV 290 (783)
Q Consensus 223 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~----f~-------g~~G~i~fd-~G~~~~~~~~I~~~ 290 (783)
++++++... +.++++|+++|++++ |+ |++|+++|+ +|+.....+.|+++
T Consensus 301 l~~ag~~~~-------------------~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~ 361 (392)
T 3lkb_A 301 IRRAQERFK-------------------RITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEA 361 (392)
T ss_dssp HHHHHHHHS-------------------SCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEE
T ss_pred HHHhhccCC-------------------CCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEE
Confidence 999986210 126899999999997 98 999999998 77766678899999
Q ss_pred c-CCcEEEEEECCCCCCc
Q 036525 291 N-NGARGVGFWTPEKGLT 307 (783)
Q Consensus 291 ~-~~~~~vg~w~~~~~~~ 307 (783)
+ +.++.++.|....++.
T Consensus 362 ~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 362 KGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp ETTEEEECSCCBCCHHHH
T ss_pred eCCEEEEeccccchhHHH
Confidence 9 7799999998765543
No 29
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.95 E-value=3e-27 Score=256.50 Aligned_cols=263 Identities=20% Similarity=0.284 Sum_probs=212.4
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcC-CeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFG-WREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~g-w~~va 80 (783)
+|+++++|.+|+||.+|..+.+++++++++++|+|+++++++.++. .++|+||+.+++..++.+++.++...+ +++++
T Consensus 69 ~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 4gnr_A 69 NLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVV 147 (353)
T ss_dssp HHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEE
T ss_pred HHHhhCCceEEeccccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 5788899999999999999999999999999999999999999875 478999999999999999999997654 45555
Q ss_pred EEEEe-CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 81 PIYVD-NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 81 ii~~d-~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
+++.+ ++||++..+.+.+ +.|++++..+.++.+.+ ||++++.+|++++||+|++.+...++..+++|++++|+.
T Consensus 148 ~~~~~~~~yg~~~~~~~~~---~~g~~vv~~~~~~~~~~--d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~ 222 (353)
T 4gnr_A 148 LYTDNASDYAKGIAKSFRE---SYKGEIVADETFVAGDT--DFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGID 222 (353)
T ss_dssp EEEETTCHHHHHHHHHHHH---HCCSEEEEEEEECTTCC--CCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCC
T ss_pred EEEcCchHHHHHHHHHHHH---HcCCEEEEEEeeCCCCC--CHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCC
Confidence 55554 4588887777654 45889999998886544 999999999999999999999999999999999999997
Q ss_pred ccceEEEEeCCcccccccCChhhhhcccceeEeeeC---------------CCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 160 NKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY---------------ENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
.+ +++.+++.... .......+..+|.+....+ .|.++++.+|+.++..+|||++++++|++
T Consensus 223 ~~---~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p~~~a~~~Yda~~~la~Ai~ 298 (353)
T 4gnr_A 223 KP---IVGGDGFNGEE-FVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAK 298 (353)
T ss_dssp SC---EEECGGGCSHH-HHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT
T ss_pred Cc---EEEecccccch-hhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHh
Confidence 76 67766554321 1111223566777776654 33445567899999999999999999998
Q ss_pred HhcccccCccccccCCCCcccccccCCCChHHHHHHHHcC-ccccceeeEEEe-cCccccceEEEEEec-CCcEEEEEE
Q 036525 225 KAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSST-RFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFW 300 (783)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~-~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~w 300 (783)
+++ ++++++++|+++ +|+|++|+++|+ +|+.. ..+.|++++ +.++.+...
T Consensus 299 ~a~-------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 299 GAK-------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp TCS-------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEEE
T ss_pred cCC-------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEEe
Confidence 764 357899999988 599999999998 89875 567788888 446555443
No 30
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.94 E-value=2.5e-27 Score=259.23 Aligned_cols=256 Identities=16% Similarity=0.207 Sum_probs=206.3
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCC-CCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSI-RSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~-~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+|+.+++|.+||||.+|..+.+++++++++++|+|++.++++.+++. .+||+||+.|++..++.+++.+++++|| +|+
T Consensus 67 ~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ 145 (374)
T 3n0x_A 67 EAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIA 145 (374)
T ss_dssp HHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEE
T ss_pred HHHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEE
Confidence 56777899999999999999999999999999999988888888864 5899999999999999999977788888 899
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC-----ceEEEEEcChhhHHHHHHHHHH
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-----TRVFIVHKLPSLGSRIFEKANE 155 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~-----~dvii~~~~~~~~~~~~~~a~~ 155 (783)
+|++|++||+...+.|++.+++.|++|+....++.+ ..||++++.+|++++ +|+|++...+... .++++++
T Consensus 146 ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~--~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~ 221 (374)
T 3n0x_A 146 TLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQD 221 (374)
T ss_dssp EEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTT--CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHH
T ss_pred EEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCC--CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHH
Confidence 999999999999999999999999999998888765 448999999999998 9999987444222 2456666
Q ss_pred cCccccceEEEEeCCcccccccCChhhhhcccceeEeeeC---------------CCCCCcccccchHHHHHHHHHHHHH
Q 036525 156 IGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY---------------ENPSLFDAELNIIGLLAYDATRALA 220 (783)
Q Consensus 156 ~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~aYDAv~~la 220 (783)
.++...++.++..+....... ......|+.+...+ +|.++++..|+.+++.+|||+++++
T Consensus 222 ~~~~~~g~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~~p~~~a~~~Yda~~~l~ 296 (374)
T 3n0x_A 222 MDPKRYGIELSTGGNILPALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVV 296 (374)
T ss_dssp TCGGGGTEEEEECCCCTTGGG-----GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred cchhhcCCeeeeccccchhhh-----hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 666555555544332211111 11344566555433 3334456779999999999999999
Q ss_pred HHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe--cCccccceEEEEEec
Q 036525 221 EAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV--DGQLQSSAFEIINVN 291 (783)
Q Consensus 221 ~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd--~G~~~~~~~~I~~~~ 291 (783)
+|++++++. ++++|+++|++++|+|++|+++|+ +|+. ...+.|++++
T Consensus 297 ~Al~~ag~~-----------------------~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~ 345 (374)
T 3n0x_A 297 TAVQKAKST-----------------------DTEKLIAAMEGMEFDTPKGKMVFRKEDHQA-LQSMYHFKVK 345 (374)
T ss_dssp HHHHHHTSC-----------------------CHHHHHHHHTTCEEEETTEEEEECTTTCBE-ECCEEEEEEE
T ss_pred HHHHHhCCC-----------------------CHHHHHHHHhcCCccCCCCCEEECcccCcc-ccceEEEEEE
Confidence 999999864 579999999999999999999997 4554 5788899987
No 31
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.94 E-value=3.3e-27 Score=257.27 Aligned_cols=261 Identities=13% Similarity=0.157 Sum_probs=219.7
Q ss_pred cccccCCeEEEEccCCchhHHHHHc--ccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQ--PGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREA 79 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~--~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~v 79 (783)
+|+.+++|.+||||.+|..+.++++ ++++.+||+|++.++++.+++ +||+||+.+++..++.++++++.++||++|
T Consensus 67 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~i 144 (364)
T 3lop_A 67 DMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRI 144 (364)
T ss_dssp HHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceE
Confidence 4666679999999999999999999 999999999999988888876 899999999999999999999999999999
Q ss_pred EEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 80 VPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 80 aii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
++|+.+++||+...+.+++++++.|++++....++.+ ..|+.+.+.++++.+||+|++++...++..+++++++.|+.
T Consensus 145 aii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~ 222 (364)
T 3lop_A 145 GVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGE 222 (364)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999887777654 34899999999999999999999999999999999999997
Q ss_pred ccceEEEEeCCcccccccCChhhh-hcccceeEeeeC----------------CCCCCccc--ccchHHHHHHHHHHHHH
Q 036525 160 NKGCVWIMTDGMTNLLRTLEPSVI-DSMQGVIDVRPY----------------ENPSLFDA--ELNIIGLLAYDATRALA 220 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~----------------~~~~~~~~--~~~~~~~~aYDAv~~la 220 (783)
.+ |++.+++... ... .... +..+|++....+ .|.+.++. .|+.++..+|||+++++
T Consensus 223 ~~---~i~~~~~~~~-~~~-~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~ 297 (364)
T 3lop_A 223 AQ---LLGLSSIDPG-ILQ-KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLA 297 (364)
T ss_dssp CE---EEECTTSCHH-HHH-HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHH
T ss_pred Ce---EEEeccCChH-HHH-HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 66 7777765432 111 1233 567888776522 23333445 78999999999999999
Q ss_pred HHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcC-cccc-ceeeEEEe-cCccccceEEEEEec-CC
Q 036525 221 EAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSST-RFKG-LTGDYIFV-DGQLQSSAFEIINVN-NG 293 (783)
Q Consensus 221 ~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~-~f~g-~~G~i~fd-~G~~~~~~~~I~~~~-~~ 293 (783)
+|+++++.. .++++|+++|+++ +|+| ++|+++|+ +++.......|.+++ ++
T Consensus 298 ~al~~ag~~----------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~ 352 (364)
T 3lop_A 298 EAIRRAGPK----------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNG 352 (364)
T ss_dssp HHHHHHCSS----------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTS
T ss_pred HHHHHhCCC----------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCC
Confidence 999999732 1579999999999 6999 99999998 555445667777777 55
No 32
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.94 E-value=7e-27 Score=257.33 Aligned_cols=271 Identities=16% Similarity=0.170 Sum_probs=224.1
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH-cCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA-FGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~gw~~va 80 (783)
+|+++++|.+||| .+|..+.++++++++.+||+|++.++++ ++ .+||+||+.+++..++.++++++.+ +||++|+
T Consensus 70 ~li~~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 145 (391)
T 3eaf_A 70 EFRDRYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLA 145 (391)
T ss_dssp HHHHTTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHhhcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEE
Confidence 4666779999999 6999999999999999999999876654 43 6899999999999999999999977 6999999
Q ss_pred EEEE-eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHH--HhccCceEEEEEcChhhHHHHHHHHHHcC
Q 036525 81 PIYV-DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYK--LFTMQTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 81 ii~~-d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~--l~~~~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
+|+. |++||+...+.+++++++.|++++....++.+ ..|+.+.+.+ |++.+||+|++.+...++..+++++++.|
T Consensus 146 ii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g 223 (391)
T 3eaf_A 146 LAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVG 223 (391)
T ss_dssp EEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHT
T ss_pred EEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCC
Confidence 9999 99999999999999999999999988887754 4499999999 99999999999999999999999999999
Q ss_pred ccccceEEEEeCCcccccccCChhhhhcccc-eeEeeeC----------------CCCCCcc-cccc--hHHHHHHHHHH
Q 036525 158 LMNKGCVWIMTDGMTNLLRTLEPSVIDSMQG-VIDVRPY----------------ENPSLFD-AELN--IIGLLAYDATR 217 (783)
Q Consensus 158 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~----------------~~~~~~~-~~~~--~~~~~aYDAv~ 217 (783)
+..+ +++++++.. .... ...++..+| ++...++ +|.++++ .+|. .+++.+|||++
T Consensus 224 ~~~~---~~~~~~~~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~yda~~ 298 (391)
T 3eaf_A 224 LDAF---LLTNVWGFD-ERSP-QLIGEGGYGKVFGISPFIYPMFGQDVEGIQTIFEAARMNGVSEDQINLRVVQGFVNVW 298 (391)
T ss_dssp CCCE---EEECGGGCS-TTHH-HHHCGGGTTSEEEEESBCCGGGCTTCHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHH
T ss_pred CCce---EEEeccCCC-HHHH-HhhhhhccCcEEEEEEecCcccCCCCchhHHHHHHHHHhCCCCcccccHHHHHHHHHH
Confidence 8765 565543321 1111 123456888 7766543 2223345 4565 89999999999
Q ss_pred HHHHHHHHh---c--ccccCccccccCCCCcccccccCCCChHHHHHHHHcCccc--ccee-eEEEe-cCccccceEEEE
Q 036525 218 ALAEAVEKA---G--ITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFK--GLTG-DYIFV-DGQLQSSAFEII 288 (783)
Q Consensus 218 ~la~Al~~a---~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~--g~~G-~i~fd-~G~~~~~~~~I~ 288 (783)
++++|++++ + +. ++++|+++|++.+|+ |++| +++|+ +|+.....+.|+
T Consensus 299 ~l~~Al~~a~~~g~~~~-----------------------~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~ 355 (391)
T 3eaf_A 299 LLIKAIESVTSQDLQER-----------------------GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFII 355 (391)
T ss_dssp HHHHHHTTSCHHHHHHH-----------------------THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEE
T ss_pred HHHHHHHHHHhcCCCCC-----------------------CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEE
Confidence 999999998 5 32 578999999998898 9999 99998 565566889999
Q ss_pred Ee-c-CCcEEEEEECCCCCC
Q 036525 289 NV-N-NGARGVGFWTPEKGL 306 (783)
Q Consensus 289 ~~-~-~~~~~vg~w~~~~~~ 306 (783)
++ + +.++.++.|...+..
T Consensus 356 ~~~~~G~~~~v~~~~~~~~~ 375 (391)
T 3eaf_A 356 KLGENGELQLMGKFEAPSQV 375 (391)
T ss_dssp EECTTSSEEEEEEECCCTTC
T ss_pred EEecCCEEEEeeeecCcccc
Confidence 99 5 669999999876544
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.94 E-value=1.2e-26 Score=254.65 Aligned_cols=271 Identities=15% Similarity=0.178 Sum_probs=219.5
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCC--CCCCCeEEEeecCchhhHHHHHHHHHHcCCeEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLT--SIRSPYFFRGALNDSSQVGAITAIIKAFGWREA 79 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls--~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~v 79 (783)
+|+++++|.+||||.+|..+.++.+++++.+||+|++.++++.++ ...++|+||+.+++..++.++++++.++||++|
T Consensus 83 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i 162 (386)
T 3sg0_A 83 KLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKV 162 (386)
T ss_dssp HHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEE
Confidence 466777999999999999999999999999999999998888777 457899999999999999999999999999999
Q ss_pred EEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 80 VPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 80 aii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
++|+.|++||+...+.+++++++.|++++....++.+ +.|+.+.+.++++.+||+|++++...++..+++++++.|+.
T Consensus 163 a~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~ 240 (386)
T 3sg0_A 163 GYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFK 240 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCC
T ss_pred EEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999877777654 34899999999999999999999989999999999999997
Q ss_pred ccceEEEEeCCcccccccCChhhhhcccceeEeeeC----------------------CCCCCccc-ccchHHHHHHHHH
Q 036525 160 NKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY----------------------ENPSLFDA-ELNIIGLLAYDAT 216 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------------------~~~~~~~~-~~~~~~~~aYDAv 216 (783)
.+ +++.+++... ... ....+..+|++....+ +|.++++. .|+.++..+|||+
T Consensus 241 ~~---~~~~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~yda~ 315 (386)
T 3sg0_A 241 GA---IYQTHGVATE-EFI-KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGAAPTIFGVHLWDSM 315 (386)
T ss_dssp SE---EECCGGGCSH-HHH-HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred Cc---EEeccccCCH-HHH-HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 55 6666655431 111 2234567888775421 23334455 6789999999999
Q ss_pred HHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcC-ccccceeeEEEe-cCcc--ccceEEEEEec-
Q 036525 217 RALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSST-RFKGLTGDYIFV-DGQL--QSSAFEIINVN- 291 (783)
Q Consensus 217 ~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~-~f~g~~G~i~fd-~G~~--~~~~~~I~~~~- 291 (783)
+++++|+++++..... +.+.++++|+++|+++ +|+|++|+++|+ +++. ....+.|++++
T Consensus 316 ~~~~~al~~a~~~~~~----------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~ 379 (386)
T 3sg0_A 316 TLVENAIPAALKAAKP----------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRD 379 (386)
T ss_dssp HHHHHHHHHHHHHCCT----------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEET
T ss_pred HHHHHHHHHhhhccCC----------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEEC
Confidence 9999999999644100 0111468999999999 799999999997 3222 23567888887
Q ss_pred CCcE
Q 036525 292 NGAR 295 (783)
Q Consensus 292 ~~~~ 295 (783)
+.++
T Consensus 380 G~~~ 383 (386)
T 3sg0_A 380 GAFR 383 (386)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 4444
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.93 E-value=4.1e-26 Score=248.06 Aligned_cols=269 Identities=15% Similarity=0.152 Sum_probs=216.6
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+|+++++|.+||||.+|..+.++.+++++.+||+|++.++ + +....++|+||+.+++..++.++++++.++||++|++
T Consensus 63 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 140 (362)
T 3snr_A 63 RFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGY 140 (362)
T ss_dssp HHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 4566779999999999999999999999999999999877 4 3445689999999999999999999999999999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|+.+++||+...+.+++++++.|++++....++.+ ..|+...+.++++.+||+|++++...++..+++++++.|+..+
T Consensus 141 i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p 218 (362)
T 3snr_A 141 IGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL 218 (362)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE
T ss_pred EecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999887777654 3488899999999999999999989999999999999999766
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEeeeC----------------------CCCCCccc-ccchHHHHHHHHHHH
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY----------------------ENPSLFDA-ELNIIGLLAYDATRA 218 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------------------~~~~~~~~-~~~~~~~~aYDAv~~ 218 (783)
++...++.+. . +........+|++....+ +|.++++. .|+.++..+|||+++
T Consensus 219 ---~i~~~g~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~yda~~~ 293 (362)
T 3snr_A 219 ---IYQTHGAASM-D-FIRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPSSRSQFAGHSYDAFKV 293 (362)
T ss_dssp ---EEECGGGCSH-H-HHHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred ---EEeccCcCcH-H-HHHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCCCCCchhHhHHHHHHH
Confidence 5666655432 1 112234567888776531 12223344 688999999999999
Q ss_pred HHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcC-ccccceeeEEEe-cCcc--ccceEEEEEec-CC
Q 036525 219 LAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSST-RFKGLTGDYIFV-DGQL--QSSAFEIINVN-NG 293 (783)
Q Consensus 219 la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~-~f~g~~G~i~fd-~G~~--~~~~~~I~~~~-~~ 293 (783)
+++|+++++++... +.+.++++|+++|+++ +|+|++|+++|+ +++. ....+.|++++ +.
T Consensus 294 ~~~al~~a~~~~~~----------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~ 357 (362)
T 3snr_A 294 LERVVPVALKKAKP----------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGK 357 (362)
T ss_dssp HHHHHHHHHHHCCT----------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTE
T ss_pred HHHHHHHhhccccC----------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCE
Confidence 99999999754200 0112468999999999 899999999997 4221 23568888888 44
Q ss_pred cE
Q 036525 294 AR 295 (783)
Q Consensus 294 ~~ 295 (783)
++
T Consensus 358 ~~ 359 (362)
T 3snr_A 358 YV 359 (362)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.93 E-value=7.4e-25 Score=240.57 Aligned_cols=269 Identities=13% Similarity=0.070 Sum_probs=214.2
Q ss_pred ccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEE
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPI 82 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii 82 (783)
|+++++|.+|||+.+|..+.++.+++++.++|+|++.+.+. ...++++||+.+++..++.++++++...||++|++|
T Consensus 70 l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i 146 (385)
T 1pea_A 70 FIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFI 146 (385)
T ss_dssp HHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEE
T ss_pred HHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEE
Confidence 55557999999999998899999999999999999876421 124689999999999999999999999999999999
Q ss_pred EEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 83 YVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 83 ~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
+.++.||+...+.|++++++.|++++....++...+..|+...+.+|++.++|+|++.+....+..+++++++.|+....
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~ 226 (385)
T 1pea_A 147 GSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRR 226 (385)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCC
T ss_pred eCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCC
Confidence 99989999999999999999999998766665433567899999999989999999988888999999999999986443
Q ss_pred eEEEEeCCcccccccCChhhhhcccceeEeeeC--------------CCCCCccc--ccchHHHHHHHHHHHHHHHHHHh
Q 036525 163 CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY--------------ENPSLFDA--ELNIIGLLAYDATRALAEAVEKA 226 (783)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~--~~~~~~~~aYDAv~~la~Al~~a 226 (783)
+.++. ..+... . +.....+..+|++...++ .|.++++. .|+.+++.+|||++++++|++++
T Consensus 227 ~~~~~-~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~a 303 (385)
T 1pea_A 227 PPIAS-LTTSEA-E-VAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAA 303 (385)
T ss_dssp CCEEE-SSCCHH-H-HTTSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEe-cccchH-H-HHhcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 33444 434321 1 111112467888887655 33344453 47889999999999999999999
Q ss_pred cccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEe-c-CCcEEEEEE
Q 036525 227 GITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINV-N-NGARGVGFW 300 (783)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~-~-~~~~~vg~w 300 (783)
++. ++++|+++|++++|+|++|+++|+ +++.....+.|.++ + +.++.+...
T Consensus 304 g~~-----------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 304 GNW-----------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp TSC-----------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred CCC-----------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 754 578999999999999999999998 45444567888888 4 446666443
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.87 E-value=3e-22 Score=212.84 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=189.1
Q ss_pred ccccCCeEEEEccCCchhHHHHHccc-CCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPG-NKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~-~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
|+ +++|.+||||.+|+.+.++++++ +..+||+|++++++ ......+.|+||+.| ..++.++++++...|.+++++
T Consensus 52 l~-~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~-~~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vai 127 (325)
T 2h4a_A 52 AK-QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATP-NSRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLV 127 (325)
T ss_dssp HH-HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCS-SCCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEE
T ss_pred HH-HCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCc-cccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEE
Confidence 44 57999999999999999999999 78999999988754 333334567777654 457899999998889999999
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
|+.+++||++..+.|++++++.|++|+..+.+.. + .||.++|.++ ..+||+|++.+++.++..+.+++++.|...+
T Consensus 128 l~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~--~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~~p 203 (325)
T 2h4a_A 128 AMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNL--P-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPNLA 203 (325)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESS--T-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTTCE
T ss_pred EEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCC--H-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCCCC
Confidence 9999999999999999999999999999888874 3 4999999999 4899999999999999999999998876555
Q ss_pred ceEEEEeCCcccccccCChhhhhcccceeEee-eC--------------CCCCCcccccchHHHHHHHHHHHHHHHHHHh
Q 036525 162 GCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVR-PY--------------ENPSLFDAELNIIGLLAYDATRALAEAVEKA 226 (783)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~--------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a 226 (783)
.++++.+......+.......++|++... |+ .|+.++ .|..+.+++|||+.+++++ .+.
T Consensus 204 ---l~~~~~~~~~s~~~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~--~~~rl~AlgyDA~~l~~~l-~~l 277 (325)
T 2h4a_A 204 ---IYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY--QLMRLYAMGADAWLLINQF-NEL 277 (325)
T ss_dssp ---EEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHHTH-HHH
T ss_pred ---EEEeccccccCCCCCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc--chHHHHHHHHHHHHHHHHH-HHH
Confidence 66777665111112334456789998765 44 232222 2566789999999986664 221
Q ss_pred cccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec
Q 036525 227 GITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN 291 (783)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~ 291 (783)
..+.+..|+|++|.++|+ +|+.. ....+.+++
T Consensus 278 --------------------------------~~~~~~~~~G~tG~l~~~~~g~~~-R~l~~~~~~ 310 (325)
T 2h4a_A 278 --------------------------------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQ 310 (325)
T ss_dssp --------------------------------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEE
T ss_pred --------------------------------hhCCCCeeccCceeEEECCCCeEE-Eeechhhcc
Confidence 113345799999999998 88874 677888887
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.87 E-value=4.5e-22 Score=213.18 Aligned_cols=250 Identities=12% Similarity=0.059 Sum_probs=189.1
Q ss_pred cccccCCeEEEEccCCchhHHHHHcccC-CCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 2 DLLNNAQVRVMLGPEDSMPTNFIIQPGN-KSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 2 ~Li~~~~V~aiIGp~~S~~~~av~~~~~-~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+++.+++|.+||||.+|+.+.++++... ...+|+++.++++. .. ..+++||+.+++..++.++++++...|+++++
T Consensus 52 ~~~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ 128 (327)
T 3ckm_A 52 AQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-SR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPL 128 (327)
T ss_dssp HHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTT-CC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCE
T ss_pred HHHHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcc-cc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEE
Confidence 3566789999999999999888777654 45566665544333 22 35899999999999999999999999999999
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+|++|++||++..+.|++++++.|++|+..+.++. + +....+.+++..++|+|++.+.+.++..+++|+++.|+..
T Consensus 129 ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~--~--~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~ 204 (327)
T 3ckm_A 129 VAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNL--P--ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL 204 (327)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESS--T--THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC
T ss_pred EEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCC--C--chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999888753 3 3446678889999999999999999999999999999866
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeee-C--------------CCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRP-Y--------------ENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+ ++.++++..............++|++.... + .|+++++. ..+.+++|||+.+++.+.+.
T Consensus 205 ~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~AlgyDA~~l~~~l~~~ 279 (327)
T 3ckm_A 205 A---IYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL--MRLYAMGADAWLLINQFNEL 279 (327)
T ss_dssp E---EEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH--HHHHHHHHHHHHHHHTHHHH
T ss_pred C---EEeeeccccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHh
Confidence 6 777776553322222222334667766543 2 34444433 33678899999887665443
Q ss_pred hcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEE
Q 036525 226 AGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGV 297 (783)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~v 297 (783)
.. +....|+|++|.++|| +|+.. ....+.+++ +.++.+
T Consensus 280 ~~---------------------------------~~~~~f~G~tG~i~fd~~G~~~-r~l~~~~~~~G~~vpv 319 (327)
T 3ckm_A 280 RQ---------------------------------VPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPV 319 (327)
T ss_dssp HH---------------------------------STTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEEC
T ss_pred cC---------------------------------CCCCCceeceEEEEECCCCCCc-cccEEEEEECCEEEEc
Confidence 22 2234699999999998 88864 667778887 445544
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.86 E-value=4.3e-22 Score=211.89 Aligned_cols=257 Identities=19% Similarity=0.366 Sum_probs=165.1
Q ss_pred cceEEEEecccCCccccEEEee--CCCCCCCccEEEeeHHHHHHHhhhCCCCC---------CCC---CCCChHHHHHHH
Q 036525 309 KLKLRIGVPVKKGFSDFVNVTI--DPKTQEQTSVTGYCIDVFKAVIPELPYAP---------DGS---SSGSYNDLIYQV 374 (783)
Q Consensus 309 ~~~L~V~v~~~~p~~~f~~~~~--~~~~~~~~~~~G~~idl~~~ia~~l~f~~---------~~~---~~~~~~gli~~l 374 (783)
.++|+||+...+||. +.+. +..+++ +++.|+++||+++|+++||++. +|. .+++|++++.+|
T Consensus 12 ~~~l~V~~~~~~P~~---~~~~~~~~~~~~-g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 12 NRSLIVTTILEEPYV---LFKKSDKPLYGN-DRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp SCEEEEEECCBTTTB---EECCCSSCCCGG-GGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred CceEEEEEeccCCee---EEeccccccCCC-ceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHH
Confidence 388999998766663 4321 001123 7899999999999999999881 121 157999999999
Q ss_pred HcCeecEEEeceeeecccceeeeccccccccc-----------ccccceeeccCChhHHHHHHHHHHHHHHhhheeeccc
Q 036525 375 FLGEFDAVVGDITIVFNRSNYVGFTLPYTESG-----------KRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRI 443 (783)
Q Consensus 375 ~~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~-----------~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~ 443 (783)
.+|++|++++++++|++|.+.++||.||+.++ ..++|.|+.||+..-+ .+.+..
T Consensus 88 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~---------------tv~~~~ 152 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPR---------------GSERME 152 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------
T ss_pred hCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCc---------------cccccc
Confidence 99999999999999999999999999999887 2357888899981111 000000
Q ss_pred CCCCCCCccCccchhHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHH
Q 036525 444 NDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGI 523 (783)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~ 523 (783)
..+. .+.-|. ++ ....-.+..++....+
T Consensus 153 -~~i~-------------~~~dL~-----------g~---------------------------~~~~vg~v~~~~~~~~ 180 (312)
T 1yae_A 153 -SPID-------------SADDLA-----------KQ---------------------------TKIEYGAVEDGATMTF 180 (312)
T ss_dssp ---CC-------------SHHHHH-----------TC---------------------------SSSEEECBTTSHHHHH
T ss_pred -CCCC-------------CHHHHh-----------hc---------------------------cCceEEEEeCChHHHH
Confidence 0000 000000 00 0000011112222334
Q ss_pred HHhcCCC-----------cccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccceEEE
Q 036525 524 LKQLGFD-----------ERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFV 592 (783)
Q Consensus 524 l~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~ 592 (783)
+.+..++ ..++..+.+.++++++|.+|+ ||++.+...+.+++++.|+ +.++++.+...+++++
T Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-----Da~i~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~a 254 (312)
T 1yae_A 181 FKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVG 254 (312)
T ss_dssp HHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-----EEEEEEHHHHHHHHTTCTT-EEEESSCSSCEEEEEE
T ss_pred HHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-----cEEEeccHHHHHHHhcCCC-EEEecccccccceEEE
Confidence 4432221 124567889999999999987 7899999999999988886 8999888888899999
Q ss_pred ecCCCCChHHHHHHHHhhhcCChHHHHHHHhcCCCCCCCCCCCCcccccccc
Q 036525 593 FPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGL 644 (783)
Q Consensus 593 ~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~~~~~c~~~~~~~~~~~L~l 644 (783)
++|++||++.||++|.+|.++|.+++|.+||+.. ..|...... +...+++
T Consensus 255 ~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c~~~~~~-~~~~~~~ 304 (312)
T 1yae_A 255 TPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG-NGCPEEESK-EASALGV 304 (312)
T ss_dssp EETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC-SCC--------------
T ss_pred EeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCCCCCCCc-cchhhhh
Confidence 9999999999999999999999999999999985 589875532 3444443
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.83 E-value=6.1e-21 Score=200.90 Aligned_cols=211 Identities=18% Similarity=0.367 Sum_probs=153.8
Q ss_pred ccEEEeeHHHHHHHhhhCCCC------CCC---C---C----CCChHHHHHHHHcCeecEEEeceeeecccceeeecccc
Q 036525 338 TSVTGYCIDVFKAVIPELPYA------PDG---S---S----SGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLP 401 (783)
Q Consensus 338 ~~~~G~~idl~~~ia~~l~f~------~~~---~---~----~~~~~gli~~l~~g~~Di~~~~~~~t~~R~~~vdFs~p 401 (783)
+++.||++||+++|++++|++ +++ . . +++|++++++|.+|++|++++++++|++|.+.++||.|
T Consensus 61 g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~P 140 (292)
T 1pb7_A 61 QCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKP 140 (292)
T ss_dssp EEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEECSC
T ss_pred cCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHHhcceEechh
Confidence 568999999999999999998 221 1 1 24899999999999999999999999999999999999
Q ss_pred cccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcccccccccchhh
Q 036525 402 YTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARF 481 (783)
Q Consensus 402 ~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~ 481 (783)
|+.++. .++.++.. .+.. +.. +-..+.. ..++
T Consensus 141 y~~~~~-----------------------------~i~~~~~~-~i~~-----~~d--------l~~~g~~-----~~~~ 172 (292)
T 1pb7_A 141 FKYQGL-----------------------------TILVKKGT-RITG-----IND--------PRLRNPS-----DKFI 172 (292)
T ss_dssp SEEEEE-----------------------------EEEEETTC-CCCS-----TTC--------HHHHSCB-----TTBC
T ss_pred hHhcCe-----------------------------EEEEECCc-CCCC-----CcC--------ccccCcc-----cceE
Confidence 988740 11222211 0100 000 0000000 0000
Q ss_pred hHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhc-C----CCcccceecCChhHHHHHHhcCcccCce
Q 036525 482 VVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQL-G----FDERKLVVYNSPEDCHELFQKGSANGGI 556 (783)
Q Consensus 482 l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~-~----~~~~~~~~~~~~~~~~~~l~~g~~~~g~ 556 (783)
+ .+..++....++++. . .+..++..+.+.++++++|.+|+ +
T Consensus 173 ~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~----v 218 (292)
T 1pb7_A 173 Y------------------------------ATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNK----L 218 (292)
T ss_dssp E------------------------------ECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTS----C
T ss_pred E------------------------------EEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCC----c
Confidence 0 011133333333221 0 01224567889999999999999 9
Q ss_pred eEEecchhHHHHHHhhcCCceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhcCCCCCCCC
Q 036525 557 AAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD 632 (783)
Q Consensus 557 ~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~~~~~c~~ 632 (783)
||++.+...+.|+++++|+ ++++++.+...+++++++|++||++.||++|.+|+++|.+++|.+||+. ..+|..
T Consensus 219 Da~i~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~-~~~c~~ 292 (292)
T 1pb7_A 219 HAFIWDSAVLEFEASQKCD-LVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR-YQECDS 292 (292)
T ss_dssp SEEEEEHHHHHHHHHHCTT-EEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTS-SSCCCC
T ss_pred eEEEEcHHHHHHHHhcCCC-EEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCC-CCCCCC
Confidence 9999999999999998896 8899988888999999999999999999999999999999999999997 457863
No 40
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.82 E-value=1.6e-20 Score=193.86 Aligned_cols=231 Identities=18% Similarity=0.383 Sum_probs=165.6
Q ss_pred ceEEEEecccCCccccEEEeeC--CCCCCCccEEEeeHHHHHHHhhhCCCCCCC--CC----------CCChHHHHHHHH
Q 036525 310 LKLRIGVPVKKGFSDFVNVTID--PKTQEQTSVTGYCIDVFKAVIPELPYAPDG--SS----------SGSYNDLIYQVF 375 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~--~~~~~~~~~~G~~idl~~~ia~~l~f~~~~--~~----------~~~~~gli~~l~ 375 (783)
++|+|++...+||. +.+.+ +.+++ +++.||++||+++|+++||++... .+ +++|++++.+|.
T Consensus 4 ~~l~v~~~~~~P~~---~~~~~~~~~~~~-g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 4 RSLIVTTILEEPYV---LFKKSDKPLYGN-DRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCEEEEECCBTTTB---EECCCSSCCCGG-GGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred cEEEEEEecCCCeE---EEeecccccCCC-ceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 68999998777764 33321 12234 889999999999999999988211 11 478999999999
Q ss_pred cCeecEEEeceeeecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCcc
Q 036525 376 LGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQV 455 (783)
Q Consensus 376 ~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (783)
+|++|++++++++|++|.+.++||.||+.++. .++.++..+ +.
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~-----------------------------~~~~~~~~~-i~------- 122 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGI-----------------------------SILYRKGTP-ID------- 122 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECE-----------------------------EEEEESSSS-CC-------
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCE-----------------------------EEEEeCCcc-cc-------
Confidence 99999999999999999999999999998740 122222211 11
Q ss_pred chhHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCC-----
Q 036525 456 GTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFD----- 530 (783)
Q Consensus 456 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~----- 530 (783)
.+.-|. +... ....+..++...+.+.+...+
T Consensus 123 ------~~~dL~--g~~~------------------------------------~~ig~~~~~~~~~~~~~~~~~~~~~~ 158 (259)
T 3g3k_A 123 ------SADDLA--KQTK------------------------------------IEYGAVEDGATMTFFKRSKISTYDKM 158 (259)
T ss_dssp ------SHHHHH--TCSS------------------------------------SEEEEETTSHHHHHHHHCCSHHHHHH
T ss_pred ------CHHHhc--cCCC------------------------------------ceEEEecCcHHHHHHhhccchhHHHH
Confidence 000110 0000 000011133333333332221
Q ss_pred ------cccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccceEEEecCCCCChHHHH
Q 036525 531 ------ERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVS 604 (783)
Q Consensus 531 ------~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl~~~in 604 (783)
...+..+++.++++++|.+|+ ||++.+...+.|++++.|+ +.+++..+...+++++++|++||++.||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~g~-----da~i~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in 232 (259)
T 3g3k_A 159 WAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKIT 232 (259)
T ss_dssp HHHHHHTHHHHEESSHHHHHHHHHHSS-----EEEEEEHHHHHHHHHHCTT-EEEESSCSSCEEECCEEETTCTHHHHHH
T ss_pred HHHHHhcCCCcccCCHHHHHHHHHhCC-----eEEEechHHHHHHhcCCce-EEEecccceeeeEEEEECCCCccHHHHH
Confidence 123456789999999999997 7999999999999888886 8899999989999999999999999999
Q ss_pred HHHHhhhcCChHHHHHHHhcCCCCCCCC
Q 036525 605 KAILNVTEGDKMKEIEDAWFKKHSSCPD 632 (783)
Q Consensus 605 ~~il~l~e~G~~~~~~~kw~~~~~~c~~ 632 (783)
++|.+|+++|.+++|.+|||+ ..+|+.
T Consensus 233 ~~l~~l~~~G~~~~i~~kw~~-~~~c~~ 259 (259)
T 3g3k_A 233 LAILKLQEQGKLHMMKEKWWR-GNGCPE 259 (259)
T ss_dssp HHHHHHHHTC-CHHHHHHHHC-C--CC-
T ss_pred HHHHHHHhcChHHHHHHhhcC-CCCCCC
Confidence 999999999999999999998 456863
No 41
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.81 E-value=3e-20 Score=195.87 Aligned_cols=208 Identities=19% Similarity=0.365 Sum_probs=152.4
Q ss_pred EEEeeHHHHHHHhhhCCCCCC------C----CCCCChHHHHHHHHcCeecEEEeceeeecccceeeecccccccccccc
Q 036525 340 VTGYCIDVFKAVIPELPYAPD------G----SSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRN 409 (783)
Q Consensus 340 ~~G~~idl~~~ia~~l~f~~~------~----~~~~~~~gli~~l~~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~~~~ 409 (783)
+.||++||+++|++++|++.. + ..+++|++++++|.+|++|++++++++|++|.+.++||.||+.++
T Consensus 68 ~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~--- 144 (294)
T 2rc8_A 68 CYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS--- 144 (294)
T ss_dssp EESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE---
T ss_pred ceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc---
Confidence 799999999999999998821 1 245789999999999999999999999999999999999999874
Q ss_pred cceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcccccccccchhhhHHHHHHH
Q 036525 410 AWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFV 489 (783)
Q Consensus 410 ~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~l~ 489 (783)
..++.++....+.. .....
T Consensus 145 --------------------------~~i~~~~~~~~i~~------------------------~~dL~----------- 163 (294)
T 2rc8_A 145 --------------------------LGILVRTRGTELSG------------------------IHDPK----------- 163 (294)
T ss_dssp --------------------------EEEEEETTSCCCCS------------------------TTCHH-----------
T ss_pred --------------------------eEEEEECCCCCcCC------------------------hhhhh-----------
Confidence 11222222111110 00000
Q ss_pred HHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCc----ccceecCChhHHHHHHhc--CcccCceeEEecch
Q 036525 490 VLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDE----RKLVVYNSPEDCHELFQK--GSANGGIAAALDEI 563 (783)
Q Consensus 490 ~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~--g~~~~g~~a~~~~~ 563 (783)
.........-.+..|+....++++. ++. .+...+.+.++++++|.+ |+ +||++.+.
T Consensus 164 -------------~~~~~~g~~vg~~~gs~~~~~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~Gr----vDa~i~~~ 225 (294)
T 2rc8_A 164 -------------LHHPSQGFRFGTVRESSAEDYVRQS-FPEMHEYMRRYNVPATPDGVQYLKNDPEK----LDAFIMDK 225 (294)
T ss_dssp -------------HHSCCTTCCEECBTTSHHHHHHHHH-CHHHHHHHGGGCBSSHHHHHHHHHSSSCC----CSEEEEEH
T ss_pred -------------hcCcccCeEEEEEcCChHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHhccCc----eeEEEecH
Confidence 0000000111222366666666553 221 122357899999999999 88 99999999
Q ss_pred hHHHHHHhhc--CCceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhcCCCCCCC
Q 036525 564 PYMKLLIGQH--CSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 631 (783)
Q Consensus 564 ~~~~~~~~~~--c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~~~~~c~ 631 (783)
..+.+++++. |+ ++++++.+...+++++++|+++|++.||++|.+|+++|.+++|.+||++ ...|+
T Consensus 226 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~-~~~c~ 293 (294)
T 2rc8_A 226 ALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK-VVPCG 293 (294)
T ss_dssp HHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHHHHHHHHCC-C----
T ss_pred HHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCCHHHHHHhhcC-CCCCC
Confidence 9999998864 65 8889888888899999999999999999999999999999999999997 46786
No 42
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.80 E-value=2e-19 Score=185.90 Aligned_cols=231 Identities=19% Similarity=0.294 Sum_probs=161.7
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCC-----------CCCCChHHHHHHHHcCe
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDG-----------SSSGSYNDLIYQVFLGE 378 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~-----------~~~~~~~gli~~l~~g~ 378 (783)
++|+|++...||| .+.+.++.++. +++.|+++|++++|++++|++... ..+++|++++.+|.+|+
T Consensus 3 ~~l~v~~~~~pP~---~~~~~~~~g~~-g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~ 78 (265)
T 2v3u_A 3 VVLRVVTVLEEPF---VMVSENVLGKP-KKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKR 78 (265)
T ss_dssp CEEEEEECCBTTT---BEEECCSTTCC-CEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred eEEEEEEeccCCe---EEEecCCCCCc-ceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcCC
Confidence 6899999877666 44444432333 689999999999999999988211 12578999999999999
Q ss_pred ecEEEeceeeecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchh
Q 036525 379 FDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTS 458 (783)
Q Consensus 379 ~Di~~~~~~~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (783)
+|++++++++|++|.+.++||.||+.++. .++.++..+ +. .
T Consensus 79 ~D~~~~~~~~t~~R~~~~~fs~p~~~~~~-----------------------------~~~~~~~~~-i~-----~---- 119 (265)
T 2v3u_A 79 ADIGISALTITPDRENVVDFTTRYMDYSV-----------------------------GVLLRRGTS-IQ-----S---- 119 (265)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECE-----------------------------EEEEETTCC-CC-----S----
T ss_pred cCeEEeeeEeehhhhccccccceeeeccE-----------------------------EEEEECCCC-cc-----c----
Confidence 99999999999999999999999987630 122222111 10 0
Q ss_pred HHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCC--------
Q 036525 459 FWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFD-------- 530 (783)
Q Consensus 459 ~~~~~~~l~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~-------- 530 (783)
+.-|. . |+- + ......++....+++..+..
T Consensus 120 ----~~dL~--~---------~v~------------------------v---~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (265)
T 2v3u_A 120 ----LQDLS--K---------QTD------------------------I---PYGTVLDSAVYQHVRMKGLNPFERDSMY 157 (265)
T ss_dssp ----HHHHH--T---------CSS------------------------S---CEECBTTSHHHHHHHHHHTCTTCSCTHH
T ss_pred ----hhhhh--h---------hhc------------------------E---EEEEeccHHHHHHHHhcCCCcccccHHH
Confidence 00010 0 000 0 00000022223333322211
Q ss_pred ----------cccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhc--CCceEEecccccccceEEEecCCCC
Q 036525 531 ----------ERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQH--CSKYTMIEPKFKTAGFGFVFPLHSP 598 (783)
Q Consensus 531 ----------~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~--c~~l~~v~~~~~~~~~~~~~~k~sp 598 (783)
..++..+.+.++++++|.+|+ + |++.+...+.+++++. |+ ++++++.+...+++++++|++|
T Consensus 158 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~----~-a~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~k~~~ 231 (265)
T 2v3u_A 158 SQMWRMINRSNGSENNVLESQAGIQKVKYGN----Y-AFVWDAAVLEYVAINDPDCS-FYTVGNTVADRGYGIALQHGSP 231 (265)
T ss_dssp HHHHHHHCC-----CCBSSHHHHHHHHHHSS----C-EEEEEHHHHHHHHHHCTTCC-EEEEC---CCEEECCEEETTCT
T ss_pred HHHHHHHHhhcCcccccCCHHHHHHHHHcCC----E-EEEEcchHHHHHHhcCCCcc-EEEeccccCCcceEEEEeCCCc
Confidence 112456789999999999999 8 8899988888888765 54 8888888888899999999999
Q ss_pred ChHHHHHHHHhhhcCChHHHHHHHhcCCCCCCC
Q 036525 599 LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 631 (783)
Q Consensus 599 l~~~in~~il~l~e~G~~~~~~~kw~~~~~~c~ 631 (783)
|++.||++|.+|.++|.+++|.+||++....|.
T Consensus 232 l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 232 YRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred cHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 999999999999999999999999999888995
No 43
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.80 E-value=9.2e-20 Score=186.36 Aligned_cols=222 Identities=14% Similarity=0.166 Sum_probs=161.2
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhC-CCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPEL-PYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l-~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+.. .|+||.+.+.+ +++.||++||+++|+++| |++.... ..+|++++.+|.+|++|++++++++
T Consensus 9 ~tl~vg~~~--~~pP~~~~d~~------G~~~G~~vdl~~~ia~~l~g~~~~~~-~~~~~~~~~~l~~g~~D~~~~~~~~ 79 (243)
T 4gvo_A 9 QTITVGTGT--QFPNVCFLDEN------GKLTGYDVELVKEIDKRLPGYKFKFK-TMDFSNLLVSLGAGKVDIVAHQMEK 79 (243)
T ss_dssp EEEEEEECS--EETTTEEECTT------SCEESHHHHHHHHHHHTCTTEEEEEE-ECCGGGHHHHHHTTSCSEECSCCBC
T ss_pred CeEEEEECC--CCCCeEEECCC------CcEEEhHHHHHHHHHHhccCCeEEEE-ECCHHHHHHHHHCCCCCEecccCCC
Confidence 789999953 34455555433 789999999999999998 7772221 2579999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
|++|.+.++||.||+.... ..++.+..+..+..
T Consensus 80 t~eR~~~~~fs~p~~~~~~----------------------------~~~~~~~~~~~~~~------------------- 112 (243)
T 4gvo_A 80 SKEREKKFLFNDVAYNNFP----------------------------LQLTVLDSNNSINS------------------- 112 (243)
T ss_dssp CHHHHHHSEECSSCCEECC----------------------------EEEEEETTCCSCSS-------------------
T ss_pred CHHHhhhhhhhhhhccccc----------------------------ceEEEeccccccCc-------------------
Confidence 9999999999999876520 01122222111110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHh----cCCCcccceecCChhHHH
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQ----LGFDERKLVVYNSPEDCH 544 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~----~~~~~~~~~~~~~~~~~~ 544 (783)
+....++.+ .+..|+....+++. .+........+.+..+++
T Consensus 113 -----~~dL~g~~v------------------------------~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (243)
T 4gvo_A 113 -----TKDLAGKRV------------------------------ITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTA 157 (243)
T ss_dssp -----GGGGTTCEE------------------------------EECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHH
T ss_pred -----hHHhcCCeE------------------------------EEecCchHHHHHHHHHHhccccceeccccCChHHHH
Confidence 011111111 12225444444432 222222334567888999
Q ss_pred HHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHh
Q 036525 545 ELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAW 623 (783)
Q Consensus 545 ~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw 623 (783)
++|..|+ +||++.+...+.+..++....+.++++++...+++++++|++| |++.||++|.+|+++|.+++|.+||
T Consensus 158 ~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw 233 (243)
T 4gvo_A 158 NQLKTGR----ADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKW 233 (243)
T ss_dssp HHHHHTS----CSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHcCC----ccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999999 9999999998888887764457788888888899999999976 9999999999999999999999999
Q ss_pred cCC
Q 036525 624 FKK 626 (783)
Q Consensus 624 ~~~ 626 (783)
|+.
T Consensus 234 ~g~ 236 (243)
T 4gvo_A 234 LGA 236 (243)
T ss_dssp HCG
T ss_pred CCC
Confidence 974
No 44
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.79 E-value=1.2e-19 Score=185.42 Aligned_cols=223 Identities=16% Similarity=0.199 Sum_probs=164.0
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceeee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~t 389 (783)
++|+||+.. .|+||.+... .+++ +++.||++||+++|+++||++.... ..+|+.++.+|.+|++|++++++++|
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~--~d~~-g~~~G~~vdl~~~ia~~lg~~~~~~-~~~~~~~~~~l~~g~~d~~~~~~~~t 85 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSL--VDGK-NQVVGADIDMAQAIADELGVKLEIL-SMSFDNVLTSLQTGKADLAVAGISAT 85 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEE--ETTE-EEEESHHHHHHHHHHHHHTSEEEEE-ECCGGGHHHHHHTTSCSEECSSCBCC
T ss_pred CEEEEEECC--CCCCcEeeec--cCCC-CcEEEeHHHHHHHHHHHhCCceEEe-cccHHHHHHHHHcCCCCcccccccCC
Confidence 789999953 3334444321 1233 7899999999999999999883221 25799999999999999999999999
Q ss_pred cccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccC-CCCCCCccCccchhHHHHHHHhhh
Q 036525 390 FNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIN-DDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 390 ~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
++|.+.++||.||+.++. .++.++.+ ..+..
T Consensus 86 ~eR~~~~~fs~py~~~~~-----------------------------~~~v~~~~~~~~~~------------------- 117 (243)
T 4h5g_A 86 DERKEVFDFSIPYYENKI-----------------------------SFLVHKADVEKYKD------------------- 117 (243)
T ss_dssp HHHHTTEEECSCSBCCCE-----------------------------EEEEEGGGTTTCCS-------------------
T ss_pred hhHccEEEccCccccCcc-----------------------------cccccccccccccc-------------------
Confidence 999999999999987630 11222211 11110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
.....++ .-.+..|+....++.+. ++..++..+++..+++++|.
T Consensus 118 -----~~dl~g~------------------------------~i~v~~g~~~~~~l~~~-~~~~~i~~~~~~~~~~~~l~ 161 (243)
T 4h5g_A 118 -----LTSLESA------------------------------NIAAQKGTVPESMVKEQ-LPKAQLTSLTNMGEAVNELQ 161 (243)
T ss_dssp -----HHHHHTS------------------------------EEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHH
T ss_pred -----cccCCCC------------------------------EEEecCCcHHHHHHHHh-cccceeEEeCCHHHHHHHHH
Confidence 0000010 11233377777777665 56678899999999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcCC-ceEEe-cccccccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhcC
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHCS-KYTMI-EPKFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 625 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c~-~l~~v-~~~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~~ 625 (783)
+|+ +|+++.+...+.+++.++.. .+..+ .......+++++++|++| |++.||++|.+|+++|.+++|.+||+.
T Consensus 162 ~Gr----vD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 162 AGK----IDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp HTS----CSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred cCC----ccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 999 99999999988888877643 12222 334455678999999986 999999999999999999999999996
Q ss_pred C
Q 036525 626 K 626 (783)
Q Consensus 626 ~ 626 (783)
-
T Consensus 238 ~ 238 (243)
T 4h5g_A 238 L 238 (243)
T ss_dssp S
T ss_pred C
Confidence 3
No 45
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.78 E-value=2.9e-19 Score=187.27 Aligned_cols=209 Identities=22% Similarity=0.415 Sum_probs=149.6
Q ss_pred cEEEeeHHHHHHHhhhCCCCCC---------C-CCCCChHHHHHHHHcCeecEEEeceeeecccceeeeccccccccccc
Q 036525 339 SVTGYCIDVFKAVIPELPYAPD---------G-SSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKR 408 (783)
Q Consensus 339 ~~~G~~idl~~~ia~~l~f~~~---------~-~~~~~~~gli~~l~~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~~~ 408 (783)
++.|+++|++++++++||++.. | ..+++|++++++|.+|++|++++++++|++|.+.++||.||+.++.
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~- 134 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGI- 134 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECE-
T ss_pred eeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCE-
Confidence 6899999999999999999821 1 1357899999999999999999999999999999999999998740
Q ss_pred ccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcccccccccchhhhHHHHHH
Q 036525 409 NAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCF 488 (783)
Q Consensus 409 ~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~l 488 (783)
.++.++... +. .+.. +-. ..+....
T Consensus 135 ----------------------------~~~~~~~~~-~~-----~~~d--------l~~---~~~~~l~---------- 159 (284)
T 2a5s_A 135 ----------------------------SVMVSRGTQ-VT-----GLSD--------KKF---QRPHDYS---------- 159 (284)
T ss_dssp ----------------------------EEEEETTCC-CC-----STTS--------HHH---HSGGGSS----------
T ss_pred ----------------------------EEEEECCcc-cc-----cccc--------ccc---CChhHcC----------
Confidence 112221110 00 0000 000 0000000
Q ss_pred HHHHHHHHhhhhhhheeeccccCCc-ccCCchHHHHHHhcCCCcc--cceec--CChhHHHHHHhcCcccCceeEEecch
Q 036525 489 VVLILTQSYTASLTSLLTVQQLQPT-ITDGSFVLGILKQLGFDER--KLVVY--NSPEDCHELFQKGSANGGIAAALDEI 563 (783)
Q Consensus 489 ~~lil~s~Yta~L~s~Lt~~~~~~~-i~sgs~~~~~l~~~~~~~~--~~~~~--~~~~~~~~~l~~g~~~~g~~a~~~~~ 563 (783)
+...-. +..++.. +.+.+. ++.. ++..+ .+.++++++|.+|+ +||++.+.
T Consensus 160 -------------------~~~~vg~v~~~s~~-~~l~~~-~~~~~~~i~~~~~~~~~~~l~~l~~G~----vDa~i~d~ 214 (284)
T 2a5s_A 160 -------------------PPFRFGTVPNGSTE-RNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDA 214 (284)
T ss_dssp -------------------SCCCEECCTTSHHH-HHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEH
T ss_pred -------------------CCceEEEEeCCchH-HHHHHH-HHHHHHHHHhccCCCHHHHHHHHHcCC----eeEEEEch
Confidence 000001 1223333 333321 2221 34455 78999999999999 99999999
Q ss_pred hHHHHHHhhc--CCceEEec--ccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhcCCCCCCC
Q 036525 564 PYMKLLIGQH--CSKYTMIE--PKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 631 (783)
Q Consensus 564 ~~~~~~~~~~--c~~l~~v~--~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~~~~~c~ 631 (783)
..+.+++++. |+ +.+++ ..+...+++++++|+++|++.||++|.++.++|.+++|.+||+. ..|.
T Consensus 215 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~--~~c~ 283 (284)
T 2a5s_A 215 AVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT--GICH 283 (284)
T ss_dssp HHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC--CCCC
T ss_pred HHHHHHHhcCCCCC-EEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh--ccCC
Confidence 9999998876 75 77774 56778899999999999999999999999999999999999996 4785
No 46
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.76 E-value=1.3e-18 Score=176.40 Aligned_cols=218 Identities=13% Similarity=0.249 Sum_probs=167.4
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+. ..+| |.+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 5 ~~l~v~~~~~~~P---~~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 74 (232)
T 3i6v_A 5 DTVRMGTEGAYPP---YNFIND-----A-GEVDGFERELGDELCKRAGLTCEWVK-NDWDSIIPNLVSGNYDTIIAGMSI 74 (232)
T ss_dssp -CEEEEECSEETT---TEEECT-----T-SCEESHHHHHHHHHHHHHTCCEEEEE-CCGGGHHHHHHTTSCSEECSSCBC
T ss_pred CEEEEEECCCCCC---eeEECC-----C-CCEeeehHHHHHHHHHHcCCceEEEE-CCHHHHHHHHHCCCCCEEEeCCcC
Confidence 67999986 3344 455432 2 78999999999999999999833222 489999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
|++|.+.++||.||+.... .++.++..
T Consensus 75 t~~r~~~~~fs~p~~~~~~-----------------------------~~~~~~~~------------------------ 101 (232)
T 3i6v_A 75 TDERDEVIDFTQNYIPPTA-----------------------------SSYVATSD------------------------ 101 (232)
T ss_dssp CHHHHTTSEEEEEEECCCE-----------------------------EEEEESST------------------------
T ss_pred CHHHHhhcCcccccccCCe-----------------------------EEEEECCC------------------------
Confidence 9999999999999987630 11122110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
.. .| .. .-.+..|+....+++.. ..++..+.+.++++++|.
T Consensus 102 -----~~------------------------dL------~g-~igv~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~L~ 142 (232)
T 3i6v_A 102 -----GA------------------------DL------SG-IVAAQTATIQAGYIAES---GATLVEFATPEETIAAVR 142 (232)
T ss_dssp -----TC------------------------CT------TS-EEEEETTSHHHHHHHHS---SSEEEEESSHHHHHHHHH
T ss_pred -----hH------------------------Hh------CC-CEEEecCchHHHHHHhc---CCeEEEeCCHHHHHHHHH
Confidence 00 00 00 11233377777787776 357888999999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcCCceEEecc-cccccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhcCC
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEP-KFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 626 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~-~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~~~ 626 (783)
+|+ +||++.+...+.+++++...++.+++. .+...+++++++|+++ +++.||++|.+|.++|.++++.+||++.
T Consensus 143 ~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~ 218 (232)
T 3i6v_A 143 NGE----ADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGE 218 (232)
T ss_dssp TTS----SSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCT
T ss_pred cCC----cCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCC
Confidence 999 999999999999998887334777765 4566789999999975 9999999999999999999999999986
Q ss_pred CCCCCCC
Q 036525 627 HSSCPDA 633 (783)
Q Consensus 627 ~~~c~~~ 633 (783)
...|...
T Consensus 219 ~~~~~~~ 225 (232)
T 3i6v_A 219 DAAVYEE 225 (232)
T ss_dssp TSCCC--
T ss_pred CCCcccc
Confidence 5555443
No 47
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.75 E-value=3.7e-18 Score=176.42 Aligned_cols=231 Identities=15% Similarity=0.312 Sum_probs=163.0
Q ss_pred ceEEEEecccCCccccEEEeeC--CCCCCCccEEEeeHHHHHHHhhhCCCCCCC-----------CCCC-ChHHHHHHHH
Q 036525 310 LKLRIGVPVKKGFSDFVNVTID--PKTQEQTSVTGYCIDVFKAVIPELPYAPDG-----------SSSG-SYNDLIYQVF 375 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~--~~~~~~~~~~G~~idl~~~ia~~l~f~~~~-----------~~~~-~~~gli~~l~ 375 (783)
++|+|++...||| .+.+.+ +..++ +++.||++|++++|++++|++... ..++ +|++++.+|.
T Consensus 4 ~~l~v~~~~~pP~---~~~~~~~~~~~~~-g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 4 KTVVVTTILESPY---VMMKKNHEMLEGN-ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCEEEEECCBTTT---BEECTTGGGCCGG-GGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred eEEEEEEecCCCc---EEEecCcccccCC-CceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 6799999866665 444321 11123 789999999999999999988211 1122 7999999999
Q ss_pred cCeecEEEeceeeecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCcc
Q 036525 376 LGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQV 455 (783)
Q Consensus 376 ~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (783)
+|++|++++++++|++|.+.++||.||+.++ ..++.+...+ +. .
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~-----------------------------~~~~~~~~~~-i~-----~- 123 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLG-----------------------------ISIMIKKGTP-IE-----S- 123 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEEC-----------------------------EEEEEETTCS-CC-----S-
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceeccc-----------------------------EEEEEcCccc-cC-----C-
Confidence 9999999999999999999999999998763 0122222211 11 0
Q ss_pred chhHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCC-----
Q 036525 456 GTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFD----- 530 (783)
Q Consensus 456 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~----- 530 (783)
+.-|. +... .++ ..+..|+... .+.+..++
T Consensus 124 -------~~dL~--g~~~-----~~i------------------------------g~v~~~~~~~-~~~~~~~~~~~~~ 158 (263)
T 1mqi_A 124 -------AEDLS--KQTE-----IAY------------------------------GTLDSGSTKE-FFRRSKIAVFDKM 158 (263)
T ss_dssp -------HHHHH--TCSS-----SEE------------------------------ECBSSSHHHH-HHHHCCSHHHHHH
T ss_pred -------HHHHh--cccC-----eeE------------------------------EEEeccHHHH-HHHhccchhHHHH
Confidence 00000 0000 000 0011133222 22221111
Q ss_pred ------cccceecCChhHHHHHH--hcCcccCceeEEecchhHHHHHHhhc-CCceEEecccccccceEEEecCCCCChH
Q 036525 531 ------ERKLVVYNSPEDCHELF--QKGSANGGIAAALDEIPYMKLLIGQH-CSKYTMIEPKFKTAGFGFVFPLHSPLVH 601 (783)
Q Consensus 531 ------~~~~~~~~~~~~~~~~l--~~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~k~spl~~ 601 (783)
..++..+.+..+++++| ..|+ +|++.+...+.+++++. |+ +.++++.+...+++++++|+++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----da~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ 232 (263)
T 1mqi_A 159 WTYMRSAEPSVFVRTTAEGVARVRKSKGK-----YAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGN 232 (263)
T ss_dssp HHHHHHCSSCCCBSSHHHHHHHHHHTTTS-----EEEEEEHHHHHHHTTSTTCC-EEEESCCSCCEEECCEEETTCTTHH
T ss_pred HHHHhhCCCceecCCHHHHHHHHhhcCCc-----EEEEechHHHHHHHhcCCCc-eEEcCCcccccceEEEEeCCCccHH
Confidence 12456788999999999 7777 58888888888888776 54 7778888888889999999999999
Q ss_pred HHHHHHHhhhcCChHHHHHHHhcCCCCCCC
Q 036525 602 DVSKAILNVTEGDKMKEIEDAWFKKHSSCP 631 (783)
Q Consensus 602 ~in~~il~l~e~G~~~~~~~kw~~~~~~c~ 631 (783)
.||++|.+|.++|.+++|.+||+.....|+
T Consensus 233 ~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 233 AVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred HHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999889997
No 48
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.73 E-value=5.3e-18 Score=172.22 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=165.2
Q ss_pred ceEEEEecccCCccccEEE-eeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVPVKKGFSDFVNV-TIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~-~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+.. .++||.+. +. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 73 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGN-----N-SSLYGFDIDLMQEICRRLHATCTFEA-YIFDDLFPALKNREVDLVIASMII 73 (237)
T ss_dssp CEEEEEEES--EETTTEECCCT-----T-SCCBSHHHHHHHHHHHHTTCEEEEEE-ECGGGHHHHHHTTSSSEECSSCBC
T ss_pred ceEEEEECC--CCCCeEEEeCC-----C-CCEeeehHHHHHHHHHHhCCceEEEE-cCHHHHHHHHhCCCCCEEEEcccc
Confidence 689999973 23445553 22 2 77999999999999999998833222 379999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
|++|.+.++||.||+... ..++.++..+ +..
T Consensus 74 ~~~r~~~~~fs~p~~~~~-----------------------------~~~~~~~~~~-~~~------------------- 104 (237)
T 3kzg_A 74 TDERKKHFIFSLPYMESN-----------------------------SQYITTVDSK-IST------------------- 104 (237)
T ss_dssp CTTGGGTCEECCCSBCCE-----------------------------EEEEEETTCS-CCS-------------------
T ss_pred ChhHhccceeeeeeeecc-----------------------------eEEEEECCCC-CCC-------------------
Confidence 999999999999998763 1122222211 110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
.....++.+ .+..|+.....+.+. ++..++..+.+.++++++|.
T Consensus 105 -----~~dL~g~~i------------------------------~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 148 (237)
T 3kzg_A 105 -----FDDLHGKKI------------------------------GVRKGTPYARQVLSE-NRNNQVIFYELIQDMLLGLS 148 (237)
T ss_dssp -----GGGGTTCEE------------------------------EEETTSTHHHHHHHT-CSSCEEEEESSHHHHHHHHH
T ss_pred -----HHHhCCCEE------------------------------EEecCCHHHHHHHHh-CCCCcEEEeCCHHHHHHHHH
Confidence 000001111 223366655555544 44467888999999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcC------C-ceEEecccc-cccceEEEecCCC-CChHHHHHHHHhhhcCChHHHH
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHC------S-KYTMIEPKF-KTAGFGFVFPLHS-PLVHDVSKAILNVTEGDKMKEI 619 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c------~-~l~~v~~~~-~~~~~~~~~~k~s-pl~~~in~~il~l~e~G~~~~~ 619 (783)
+|+ +||++.+...+.+++++.. . .+.+++.++ ...+++++++|++ .+++.||++|.+|.++|.+++|
T Consensus 149 ~G~----vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i 224 (237)
T 3kzg_A 149 NNQ----VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRL 224 (237)
T ss_dssp TTS----SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred cCC----CCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHH
Confidence 999 9999999999999988865 2 588888877 7888999999996 4999999999999999999999
Q ss_pred HHHhcCCCCCCC
Q 036525 620 EDAWFKKHSSCP 631 (783)
Q Consensus 620 ~~kw~~~~~~c~ 631 (783)
.+||+.....|+
T Consensus 225 ~~k~~~~~~~~~ 236 (237)
T 3kzg_A 225 YSEYFEGHHHHH 236 (237)
T ss_dssp HHHHC-------
T ss_pred HHHHhCcccccC
Confidence 999998655543
No 49
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.72 E-value=2.9e-17 Score=168.19 Aligned_cols=220 Identities=15% Similarity=0.298 Sum_probs=169.9
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+|++. ..+|| .+. .+ +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 24 ~~l~v~~~~~~~P~---~~~-~~------g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 92 (249)
T 4f3p_A 24 KELVVGTDTSFMPF---EFK-QG------DKYVGFDLDLWAEIAKGAGWTYKIQP-MDFAGLIPALQTQNIDVALSGMTI 92 (249)
T ss_dssp CCEEEEEESCBTTT---BEE-ET------TEEESHHHHHHHHHHHHHTCCEEEEE-ECGGGHHHHHHTTSCSEEEEEEEC
T ss_pred ceEEEEeCCCCCCe---EEe-cC------CeEEEEhHHHHHHHHHHcCCceEEEe-cCHHHHHHHHHCCCCCEEEecccc
Confidence 78999997 44555 443 22 78999999999999999998832222 479999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
+++|.+.++||.||+... ..++.+...+.+..
T Consensus 93 ~~~r~~~~~~s~p~~~~~-----------------------------~~~~~~~~~~~i~~------------------- 124 (249)
T 4f3p_A 93 KEERRKAIDFSDPYYDSG-----------------------------LAAMVQANNTTIKS------------------- 124 (249)
T ss_dssp CHHHHTTEEECSCCEEEE-----------------------------EEEEEETTCCSCCS-------------------
T ss_pred CHHHHcCcceecceeecc-----------------------------EEEEEECCCCCcCC-------------------
Confidence 999999999999998763 11222222111110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
+....++.+ .+..|+....++.+. .+..++..+++.++++++|.
T Consensus 125 -----~~dL~g~~i------------------------------~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~ 168 (249)
T 4f3p_A 125 -----IDDLNGKVI------------------------------AAKTGTATIDWIKAH-LKPKEIRQFPNIDQAYLALE 168 (249)
T ss_dssp -----SGGGTTSEE------------------------------EEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHH
T ss_pred -----hHHhCCCEE------------------------------EEeCCChHHHHHHhc-CCCceEEEcCCHHHHHHHHH
Confidence 000011111 223366667777665 35567888999999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcC-CceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhcCCC
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKH 627 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~~~ 627 (783)
+|+ +||++.+...+.+++++.. ..+.+++..+...+++++++|++|+++.||++|.++.++|.+++|.+||++..
T Consensus 169 ~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 169 AGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp TTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred cCC----eeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 999 9999999999999988763 35888888888889999999999999999999999999999999999999854
Q ss_pred C
Q 036525 628 S 628 (783)
Q Consensus 628 ~ 628 (783)
.
T Consensus 245 ~ 245 (249)
T 4f3p_A 245 P 245 (249)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.71 E-value=4.8e-17 Score=165.54 Aligned_cols=219 Identities=17% Similarity=0.231 Sum_probs=168.1
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+. ..+| |.+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|++++++..
T Consensus 11 ~~l~v~~~~~~~P---~~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 80 (242)
T 3del_B 11 EKFIVGTNATYPP---FEFVDK-----R-GEVVGFDIDLAREISNKLGKTLDVRE-FSFDALILNLKQHRIDAVITGMSI 80 (242)
T ss_dssp CEEEEEECSCBTT---TBEECT-----T-SCEESHHHHHHHHHHHHHTCEEEEEE-CCGGGHHHHHHTTSSSEECSSBBC
T ss_pred CcEEEEeCCCCCC---eeEECC-----C-CCEEEeeHHHHHHHHHHcCCceEEEE-cCHHHHHHHHhCCCcCEEEecCcC
Confidence 78999995 3444 444322 2 78999999999999999998833222 379999999999999999999999
Q ss_pred ecccceeeecccccc--cccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHh
Q 036525 389 VFNRSNYVGFTLPYT--ESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTM 466 (783)
Q Consensus 389 t~~R~~~vdFs~p~~--~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (783)
|++|.+.++| .||+ ... ..++.+.. ..+..
T Consensus 81 ~~~r~~~~~~-~p~~~~~~~-----------------------------~~~~~~~~-~~i~~----------------- 112 (242)
T 3del_B 81 TPSRLKEILM-IPYYGEEIK-----------------------------HLVLVFKG-ENKHP----------------- 112 (242)
T ss_dssp CHHHHTTEEE-EEEEEEEES-----------------------------EEEEEEES-CCSCC-----------------
T ss_pred CHHHHhcccc-eeeeecCCc-----------------------------eEEEEeCC-CCCCC-----------------
Confidence 9999999999 9998 542 01222222 11110
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHH
Q 036525 467 VFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHEL 546 (783)
Q Consensus 467 ~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (783)
+....++. -.+..|+....++.. .+..++..+.+.++++++
T Consensus 113 -------~~dL~g~~------------------------------i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~ 153 (242)
T 3del_B 113 -------LPLTQYRS------------------------------VAVQTGTYQEAYLQS--LSEVHIRSFDSTLEVLME 153 (242)
T ss_dssp -------CCGGGSSC------------------------------EEEETTSHHHHHHHH--STTCCEEEESSHHHHHHH
T ss_pred -------HHHhCCCE------------------------------EEEEcCcHHHHHHHh--CCCceEEEECCHHHHHHH
Confidence 00001111 123337777777776 456688889999999999
Q ss_pred HhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccc----eEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHH
Q 036525 547 FQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAG----FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIED 621 (783)
Q Consensus 547 l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~----~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~ 621 (783)
|.+|+ +||++.+...+.+++++... +.+++..+...+ ++++++|+++ +++.||++|.+|.++|.+++|.+
T Consensus 154 L~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~ 228 (242)
T 3del_B 154 VMHGK----SPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQ 228 (242)
T ss_dssp HHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHcCC----CCEEEecHHHHHHHHHhCCC-eEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 99999999999999988775 888877777777 9999999986 99999999999999999999999
Q ss_pred HhcCCCCCC
Q 036525 622 AWFKKHSSC 630 (783)
Q Consensus 622 kw~~~~~~c 630 (783)
||+...+.+
T Consensus 229 k~~~~~~~~ 237 (242)
T 3del_B 229 KWGLNNLEH 237 (242)
T ss_dssp HTTGGGCSS
T ss_pred HHCCCCCcc
Confidence 999864433
No 51
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.71 E-value=3.3e-17 Score=167.23 Aligned_cols=227 Identities=16% Similarity=0.239 Sum_probs=171.9
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+. ..+|| .+.+.+ +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 5 ~~l~v~~~~~~~P~---~~~~~~------g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 74 (245)
T 3k4u_A 5 GELRVGLEPGYLPF---EMKDKK------GNVIGFDVDLAREMAKAMGVKLKLVP-TSWDGLIPGLVTEKFDIIISGMTI 74 (245)
T ss_dssp SEEEEEECTTSTTT---CEEETT------TEEESHHHHHHHHHHHHHTCEEEEEE-CCGGGHHHHHHTTSCSEECSSCBC
T ss_pred CeEEEEECCCcCCe---eEECCC------CCCccchHHHHHHHHHHhCCeEEEEE-ccHHHHHHHHhCCCcCEEEecCcC
Confidence 68999997 44554 444332 78999999999999999998832222 479999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccC-CCCCCCccCccchhHHHHHHHhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIN-DDFRGPAKHQVGTSFWFSFSTMV 467 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 467 (783)
|++|.+.+.||.||+... ..++.+..+ ..+..
T Consensus 75 t~~r~~~~~~s~p~~~~~-----------------------------~~~~~~~~~~~~i~~------------------ 107 (245)
T 3k4u_A 75 SQERNLRVNFVEPYIVVG-----------------------------QSLLVKKGLEKGVKS------------------ 107 (245)
T ss_dssp CHHHHTTSEECSCSEEEC-----------------------------EEEEEETTTTTTCCS------------------
T ss_pred CHHHHhhcCcchhhheec-----------------------------eEEEEECCcccccCC------------------
Confidence 999999999999998873 012222221 11110
Q ss_pred hcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHH
Q 036525 468 FSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELF 547 (783)
Q Consensus 468 ~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 547 (783)
..... -+...-.+..|+....++... .+..++..+++..+++++|
T Consensus 108 ------~~dL~----------------------------~~g~~i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L 152 (245)
T 3k4u_A 108 ------YKDLD----------------------------KPELTLVTKFGVSAEYAAKRL-FKNAKLKTYDTEAEAVQEV 152 (245)
T ss_dssp ------GGGGC----------------------------CSSCEEEEETTSHHHHHHHHH-CSSSEEEEESSHHHHHHHH
T ss_pred ------HHHhc----------------------------cCCcEEEEeCCcHHHHHHHhh-CCcCCEEEeCCHHHHHHHH
Confidence 00000 000011233377777777664 4556888899999999999
Q ss_pred hcCcccCceeEEecchhHHHHHHhhcC-CceEEecccccccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhcC
Q 036525 548 QKGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIEPKFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 625 (783)
Q Consensus 548 ~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~~ 625 (783)
.+|+ +||++.+...+.+++.+.. ..+..++..+...+++++++|++| +++.||++|.++.++|.++++.+||++
T Consensus 153 ~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 228 (245)
T 3k4u_A 153 LNGK----ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFV 228 (245)
T ss_dssp HSSS----SEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred HcCC----CcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 9999 9999999999998887763 357778888888899999999987 999999999999999999999999998
Q ss_pred CCCCCCC
Q 036525 626 KHSSCPD 632 (783)
Q Consensus 626 ~~~~c~~ 632 (783)
...-+..
T Consensus 229 ~~~~~~~ 235 (245)
T 3k4u_A 229 DTKWLEK 235 (245)
T ss_dssp CCSGGGC
T ss_pred ccccchh
Confidence 7654443
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.69 E-value=7.1e-17 Score=167.20 Aligned_cols=220 Identities=15% Similarity=0.228 Sum_probs=166.8
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceeee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~t 389 (783)
++|+||+.. .|+||.+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|++++++..|
T Consensus 21 ~~l~v~~~~--~~~P~~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~t 91 (268)
T 3hv1_A 21 KKIKIGFDA--TFVPMGYEEK-----D-GSYIGFDIDLANAVFKLYGIDVEWQA-IDWDMKETELKNGTIDLIWNGYSVT 91 (268)
T ss_dssp TEEEEEECT--EETTTEEECT-----T-SCEECHHHHHHHHHHHTTTCEEEEEE-CCGGGHHHHHHHTSCSEECSSCBCC
T ss_pred CcEEEEECC--CCCCceEECC-----C-CCEEEehHHHHHHHHHHhCCcEEEEE-CCHHHHHHHHHCCCCCEEEecCccC
Confidence 899999963 2334455432 2 78999999999999999998832222 3699999999999999999999999
Q ss_pred cccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhc
Q 036525 390 FNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFS 469 (783)
Q Consensus 390 ~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 469 (783)
++|.+.++||.||+... ..++.++.. .+..
T Consensus 92 ~~r~~~~~fs~p~~~~~-----------------------------~~~~~~~~~-~i~~-------------------- 121 (268)
T 3hv1_A 92 DERKQSADFTEPYMVNE-----------------------------QVLVTKKSS-GIDS-------------------- 121 (268)
T ss_dssp HHHHTTCEECCCCEEEC-----------------------------EEEEEEGGG-CCCS--------------------
T ss_pred HHHHhcCcCcHHHeeCc-----------------------------eEEEEECCC-CCCC--------------------
Confidence 99999999999998763 012222211 1100
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcC------CCcccceecCChhHH
Q 036525 470 QRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLG------FDERKLVVYNSPEDC 543 (783)
Q Consensus 470 ~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~------~~~~~~~~~~~~~~~ 543 (783)
.....++ .-.+..|+....++.... ++..++..+.+..++
T Consensus 122 ----~~dL~g~------------------------------~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (268)
T 3hv1_A 122 ----VAGMAGK------------------------------TLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQA 167 (268)
T ss_dssp ----SGGGTTC------------------------------CEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHH
T ss_pred ----HHHhCCC------------------------------EEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHH
Confidence 0000111 112233666665555432 334577889999999
Q ss_pred HHHHhcCcccCceeEEecchhHHHHHHhhcC--CceEEecccccccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHH
Q 036525 544 HELFQKGSANGGIAAALDEIPYMKLLIGQHC--SKYTMIEPKFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIE 620 (783)
Q Consensus 544 ~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c--~~l~~v~~~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~ 620 (783)
+++|.+|+ +||++.+...+.+++++.. ..+.+++..+...+++++++|+++ +++.||++|.++.++|.+++|.
T Consensus 168 ~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~ 243 (268)
T 3hv1_A 168 LIDLNSGR----IDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKIS 243 (268)
T ss_dssp HHHHHHTS----CSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCC----CCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999 9999999999999888763 458888888888899999999985 9999999999999999999999
Q ss_pred HHhcCC
Q 036525 621 DAWFKK 626 (783)
Q Consensus 621 ~kw~~~ 626 (783)
+||++.
T Consensus 244 ~k~~~~ 249 (268)
T 3hv1_A 244 NKWFGE 249 (268)
T ss_dssp HHHHSS
T ss_pred HHhcCC
Confidence 999975
No 53
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.68 E-value=2.2e-16 Score=159.38 Aligned_cols=220 Identities=21% Similarity=0.301 Sum_probs=163.9
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceeee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~t 389 (783)
++|+||+...+| |.+.+.+ .+ +++.|+++|+++++++++|++.......+|..++.+|.+|++|+++++++.+
T Consensus 4 ~~l~v~~~~~~P---~~~~~~~---~~-g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~ 76 (233)
T 1ii5_A 4 MALKVGVVGNPP---FVFYGEG---KN-AAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVT 76 (233)
T ss_dssp CCEEEEECCCTT---TCEEC---------CEESHHHHHHHHHHHHHTCCEEEEECSCHHHHHHHHHTTSCSEEEEEEECC
T ss_pred ceEEEEecCCCC---eEEEecC---CC-CCEEEEeHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHCCCcCEEEeeeecC
Confidence 679999975444 4554101 12 7799999999999999999883322224899999999999999999999999
Q ss_pred cccc--eeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCC-CCCCCccCccchhHHHHHHHh
Q 036525 390 FNRS--NYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIND-DFRGPAKHQVGTSFWFSFSTM 466 (783)
Q Consensus 390 ~~R~--~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 466 (783)
++|. +.++|+.||+... ..++.+...+ .+..
T Consensus 77 ~~r~~~~~~~~s~p~~~~~-----------------------------~~~~~~~~~~~~i~~----------------- 110 (233)
T 1ii5_A 77 PERAAIEGITFTQPYFSSG-----------------------------IGLLIPGTATPLFRS----------------- 110 (233)
T ss_dssp HHHHTSTTEEECCCCEEEE-----------------------------EEEEEEGGGTTTCSS-----------------
T ss_pred ccccccceeEEccceeecC-----------------------------eEEEEECCCCCCCCC-----------------
Confidence 9999 9999999998763 0122222211 1110
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHH
Q 036525 467 VFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHEL 546 (783)
Q Consensus 467 ~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (783)
+....++. -.+..|+....++...+ .++..+.+..+++++
T Consensus 111 -------~~dL~g~~------------------------------v~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~ 150 (233)
T 1ii5_A 111 -------VGDLKNKE------------------------------VAVVRDTTAVDWANFYQ---ADVRETNNLTAAITL 150 (233)
T ss_dssp -------GGGGTTCE------------------------------EEEETTSHHHHHHHHTT---CEEEEESSHHHHHHH
T ss_pred -------HHHhCCCe------------------------------EEEECCccHHHHHHHcC---CCeEEcCCHHHHHHH
Confidence 00000110 12223666667776653 367788999999999
Q ss_pred HhcCcccCceeEEecchhHHHHHHhhcC-CceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhcC
Q 036525 547 FQKGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 625 (783)
Q Consensus 547 l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~ 625 (783)
|.+|+ +||++.+...+.+++++.. ..+.+++..+...+++++++|++++.+.+|++|.+|.++|.++++.+||+.
T Consensus 151 l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~ 226 (233)
T 1ii5_A 151 LQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG 226 (233)
T ss_dssp HHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHcCC----ccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 99999 9999999999998888763 258888877778889999999999999999999999999999999999997
Q ss_pred C
Q 036525 626 K 626 (783)
Q Consensus 626 ~ 626 (783)
.
T Consensus 227 ~ 227 (233)
T 1ii5_A 227 P 227 (233)
T ss_dssp -
T ss_pred C
Confidence 4
No 54
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.68 E-value=6e-17 Score=164.49 Aligned_cols=220 Identities=14% Similarity=0.219 Sum_probs=163.5
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceeee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~t 389 (783)
++|+||+.. .|+||.+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.|
T Consensus 15 ~~l~v~~~~--~~~P~~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~t 85 (239)
T 3kbr_A 15 GVLRVATTG--DYKPFSYRTE-----E-GGYAGFDVDMAQRLAESLGAKLVVVP-TSWPNLMRDFADDRFDIAMSGISIN 85 (239)
T ss_dssp TEEEEEECS--EETTTEEECT-----T-SCEESHHHHHHHHHHHHTTCEEEEEE-CCTTTHHHHHHTTCCSEECSSCBCC
T ss_pred CeEEEEECC--CCCCeeEECC-----C-CCEEeehHHHHHHHHHHHCCceEEEE-eCHHHHHHHHHCCCcCEEEeCCcCC
Confidence 789999953 2334454432 2 78999999999999999998833222 3799999999999999999999999
Q ss_pred cccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCC-CCCCCccCccchhHHHHHHHhhh
Q 036525 390 FNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIND-DFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 390 ~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
++|.+.++||.||+.... .++.++.+. .+. .+.-|..
T Consensus 86 ~~r~~~~~fs~p~~~~~~-----------------------------~~~~~~~~~~~i~-------------~~~dL~~ 123 (239)
T 3kbr_A 86 LERQRQAYFSIPYLRDGK-----------------------------TPITLCSEEARFQ-------------TLEQIDQ 123 (239)
T ss_dssp HHHHTTCEECSCSEEECE-----------------------------EEEEEGGGGGGGS-------------SHHHHSS
T ss_pred HHHcCccccchHHhccCc-----------------------------EEEEECCcccccC-------------CHHHhcC
Confidence 999999999999998630 112221110 000 0000000
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
+...-.+..|+....++... ++..++..+++..+++++|.
T Consensus 124 ---------------------------------------~g~~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~ 163 (239)
T 3kbr_A 124 ---------------------------------------PGVTAIVNPGGTNEKFARAN-LKKARILVHPDNVTIFQQIV 163 (239)
T ss_dssp ---------------------------------------TTCEEEECTTSHHHHHHHHH-CSSSEEEECCCTTTHHHHHH
T ss_pred ---------------------------------------CCcEEEEcCCCcHHHHHHHh-CCCCceEEeCCHHHHHHHHH
Confidence 00011233377777777764 45668888999999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcCCceEEec--ccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhcC
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHCSKYTMIE--PKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 625 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~--~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~ 625 (783)
+|+ +||++.+...+.++++++.+ +.++. .++...+++++++|+..+++.||++|.+|.++|.++++.+|||+
T Consensus 164 ~gr----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 164 DGK----ADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp TTS----CSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEECCEECSCHHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred cCC----cCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceEEEEcCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 999 99999999999999988765 55554 45677889999999446999999999999999999999999996
No 55
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.67 E-value=2.2e-16 Score=158.46 Aligned_cols=218 Identities=20% Similarity=0.289 Sum_probs=160.2
Q ss_pred ceEEEEecc-cCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVPV-KKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~~-~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+.. .||| .+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 2 ~~l~v~~~~~~~P~---~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 71 (227)
T 3tql_A 2 DTIKFATEATYPPY---VYMGP-----S-GQVEGFGADIVKAVCKQMQAVCTISN-QPWDSLIPSLKLGKFDALFGGMNI 71 (227)
T ss_dssp CEEEEEECSCBTTT---BEEC--------CCEESHHHHHHHHHHHHTTCEEEEEE-CCHHHHHHHHHHTSCSEECSSCBC
T ss_pred ceEEEEEcCCCCCe---eEECC-----C-CCcccchHHHHHHHHHHhCCeEEEEe-CCHHHHHHHHhCCCCCEEEecCcC
Confidence 579999964 4554 44432 2 78999999999999999998832222 479999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
+++|.+.+.||.||+... ..++.+...+...
T Consensus 72 ~~~r~~~~~~s~p~~~~~-----------------------------~~l~~~~~~~~~~-------------------- 102 (227)
T 3tql_A 72 TTARQKEVDFTDPYYTNS-----------------------------VSFIADKNTPLTL-------------------- 102 (227)
T ss_dssp CTTGGGTEEECSCSBCCE-----------------------------EEEEEETTSCCCC--------------------
T ss_pred CHhHHhheecccceeccc-----------------------------eEEEEeCCCCCCC--------------------
Confidence 999999999999998763 1122222211100
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
......++.+ .+..|+....++........++..+.+.++++++|.
T Consensus 103 ----~~~dL~g~~v------------------------------~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 148 (227)
T 3tql_A 103 ----SKQGLKGKII------------------------------GVQGGTTFDSYLQDSFGNSITIQRYPSEEDALMDLT 148 (227)
T ss_dssp ----STTTTTTCEE------------------------------EEETTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHT
T ss_pred ----CHHHhCCCEE------------------------------EEEecccHHHHHHHhccccceEEEcCCHHHHHHHHH
Confidence 0001111111 223366666666654221157788999999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcCC-ceEEecccccc-----cceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHH
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHCS-KYTMIEPKFKT-----AGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIED 621 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c~-~l~~v~~~~~~-----~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~ 621 (783)
+|+ +||++.+...+.+++++... .+.+++..+.. .+++++++|++| +++.||++|.++.++|.++++.+
T Consensus 149 ~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~ 224 (227)
T 3tql_A 149 SGR----VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQ 224 (227)
T ss_dssp TTS----SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cCC----cCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 999 99999999999998887643 36666544433 345899999987 99999999999999999999999
Q ss_pred Hhc
Q 036525 622 AWF 624 (783)
Q Consensus 622 kw~ 624 (783)
|||
T Consensus 225 k~~ 227 (227)
T 3tql_A 225 KYF 227 (227)
T ss_dssp HHC
T ss_pred hhC
Confidence 997
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.64 E-value=4.3e-16 Score=157.28 Aligned_cols=218 Identities=15% Similarity=0.232 Sum_probs=165.4
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+. ..+| |.+.+. + +++.|+++|+++++++++|++.... ..+|..++.+|.+|++|++ .+++.
T Consensus 11 ~~l~v~~~~~~~P---~~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~-~~~~~~~~~~l~~g~~D~~-~~~~~ 79 (234)
T 3h7m_A 11 RTIVVGGDRDYPP---YEFIDQ-----N-GKPAGYNVELTRAIAEVMGMTVEFR-LGAWSEMFSALKSGRVDVL-QGISW 79 (234)
T ss_dssp SCEEEEEETEETT---TEEECT-----T-SCEESHHHHHHHHHHHHHTCCEEEE-EECGGGHHHHHHTTSSSEE-EEEEC
T ss_pred CEEEEEecCCCCC---eEEECC-----C-CCEeeeEHHHHHHHHHHcCCceEEE-eCCHHHHHHHHhCCCeeEE-EeccC
Confidence 78999994 3444 454432 2 7899999999999999999883222 2579999999999999994 78999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
+++|.+.+.||.||+... ..++.+...+.+..
T Consensus 80 ~~~r~~~~~~s~p~~~~~-----------------------------~~~~~~~~~~~~~~------------------- 111 (234)
T 3h7m_A 80 SEKRARQIDFTPPHTIVY-----------------------------HAIFARRDSPPAAG------------------- 111 (234)
T ss_dssp CHHHHTTEEEEEEEEEEE-----------------------------EEEEEESSSCCCSS-------------------
T ss_pred CHhHHhhcCCCccccccc-----------------------------eEEEEECCCCCCCC-------------------
Confidence 999999999999998763 01222222211110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
+....++ .-.+..|+....++.+.+ +..++..+++..+++++|.
T Consensus 112 -----~~dL~g~------------------------------~i~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 155 (234)
T 3h7m_A 112 -----LEDLRGR------------------------------KVALHRDGIMHEYLAERG-YGKDLVLTPTPADALRLLA 155 (234)
T ss_dssp -----GGGGTTS------------------------------CEEEETTSHHHHHHHTTT-CGGGEEEESSHHHHHHHHH
T ss_pred -----HHHhCCC------------------------------EEEEEeCchHHHHHHhcC-CCceEEEeCCHHHHHHHHH
Confidence 0000111 112333666777777653 3457888999999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhc-CCceEEecccccccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhcCC
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQH-CSKYTMIEPKFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 626 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~~~ 626 (783)
+|+ +||++.+...+.+++++. ...+.+++..+...+++++++|+++ +++.||++|.+|.++|.++++.+||++.
T Consensus 156 ~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 156 AGG----CDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp TTS----SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred cCC----ceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 999 999999999998888775 3357888878888889999999986 9999999999999999999999999974
No 57
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.64 E-value=2.6e-16 Score=163.02 Aligned_cols=219 Identities=15% Similarity=0.215 Sum_probs=163.0
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceeee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~t 389 (783)
++|+||+..+ |+||.+.+. + +++.|+++|+++++++++|++.......+|..++.+|.+|++|+++ +++.|
T Consensus 32 ~~l~v~~~~~--~~P~~~~~~-----~-g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t 102 (267)
T 3mpk_A 32 PVVKVAVLNL--FAPFTLFRT-----D-EQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAG-ALFVN 102 (267)
T ss_dssp SEEEEEEETE--ETTTEECCT-----T-CCCBSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEEE-EEECC
T ss_pred CcEEEEeCCC--CCCeEEECC-----C-CcEeeeHHHHHHHHHHHHCCeEEEEecCCHHHHHHHHHCCCccEEe-cccCC
Confidence 7899999642 344555332 2 7799999999999999999883333335799999999999999965 89999
Q ss_pred cccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhc
Q 036525 390 FNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFS 469 (783)
Q Consensus 390 ~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 469 (783)
++|.+.+.||.||+... ..++.+.......
T Consensus 103 ~~r~~~~~fs~p~~~~~-----------------------------~~l~~~~~~~~i~--------------------- 132 (267)
T 3mpk_A 103 SARESFLSFSRPYVRNG-----------------------------MVIVTRQDPDAPV--------------------- 132 (267)
T ss_dssp GGGTTTEEECSCSEEEC-----------------------------EEEEEESSTTSCS---------------------
T ss_pred hhhhcceEechhhccCc-----------------------------eEEEEECCCCCCC---------------------
Confidence 99999999999999873 1122222211111
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHhc
Q 036525 470 QRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQK 549 (783)
Q Consensus 470 ~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 549 (783)
.+....++.+ .+..|+....++.+. ++..++..+++.++++++|.+
T Consensus 133 ---~~~dL~g~~i------------------------------~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~l~~L~~ 178 (267)
T 3mpk_A 133 ---DADHLDGRTV------------------------------ALVRNSAAIPLLQRR-YPQAKVVTADNPSEAMLMVAN 178 (267)
T ss_dssp ---SGGGCTTCEE------------------------------EEETTCTHHHHHHHH-CTTSEEEEESSHHHHHHHHHH
T ss_pred ---CHHHHCCCEE------------------------------EEeCCchhHHHHHHh-CCCcEEEEeCCHHHHHHHHHc
Confidence 0001111111 233366677777654 456688889999999999999
Q ss_pred CcccCceeEEecchhHHHHHHhhc-CCceEEecccc-cccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhcCC
Q 036525 550 GSANGGIAAALDEIPYMKLLIGQH-CSKYTMIEPKF-KTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 626 (783)
Q Consensus 550 g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~-~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~~~ 626 (783)
|+ +||++.+...+.+++++. ...+.+++... ...+++++++|++| +++.||++|.+|.++| ++++.+||++.
T Consensus 179 Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 179 GQ----ADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp TS----CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred CC----CCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 99 999999999999988874 33477775533 46788999999986 9999999999999996 99999999974
No 58
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.64 E-value=7.2e-16 Score=157.00 Aligned_cols=219 Identities=10% Similarity=0.126 Sum_probs=160.4
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCC-CCCCCCCCCChHHHHHHHHcCeecEEEecee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELP-YAPDGSSSGSYNDLIYQVFLGEFDAVVGDIT 387 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~-f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~ 387 (783)
++|+|++. ..+|| .+ ..+ +++.|+++|+++++++++| ++..... .+|..++.+|.+|++|+++++++
T Consensus 8 ~~l~v~~~~~~~P~---~~-~~~------g~~~G~~~dl~~~i~~~~g~~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~ 76 (246)
T 4eq9_A 8 KEIIVATNGSPRPF---IY-EEN------GELTGYEIEVVRAIFKDSDKYDVKFEK-TEWSGVFAGLDADRYNMAVNNLS 76 (246)
T ss_dssp EEEEEEECCCSTTT---SE-EET------TEEESHHHHHHHHHHTTCSSEEEEEEE-CCHHHHHHHHHTTSCSEECSSCC
T ss_pred CEEEEEeCCCcCCe---EE-cCC------CCCcccHHHHHHHHHHHcCCceEEEEe-CCHHHHHHHHhCCCcCEEecccc
Confidence 78999997 44555 33 222 7899999999999999999 8732222 38999999999999999999999
Q ss_pred eecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhh
Q 036525 388 IVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMV 467 (783)
Q Consensus 388 ~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (783)
.|++|.+.++||.||+... ..++.++....+..
T Consensus 77 ~~~~r~~~~~~s~p~~~~~-----------------------------~~~~~~~~~~~i~~------------------ 109 (246)
T 4eq9_A 77 YTKERAEKYLYAAPIAQNP-----------------------------NVLVVKKDDSSIKS------------------ 109 (246)
T ss_dssp CCHHHHHHEEECCCCEECC-----------------------------EEEEEETTCCSCSS------------------
T ss_pred cChhhhhceeeccceecCc-----------------------------eEEEEECCCCCCCC------------------
Confidence 9999999999999999873 11222221111110
Q ss_pred hcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHh----cCCCcccce-ecCChhH
Q 036525 468 FSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQ----LGFDERKLV-VYNSPED 542 (783)
Q Consensus 468 ~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~----~~~~~~~~~-~~~~~~~ 542 (783)
.....++.+ .+..|+....++.. ......++. ...+.++
T Consensus 110 ------~~dL~g~~i------------------------------~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (246)
T 4eq9_A 110 ------LDDIGGKST------------------------------EVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQ 153 (246)
T ss_dssp ------GGGCTTCEE------------------------------EECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHH
T ss_pred ------HHHhCCCEE------------------------------EEecCccHHHHHHHHHhhCCCcceEEEecCCCHHH
Confidence 000011111 22235555555554 221122333 2358899
Q ss_pred HHHHHhcCcccCceeEEecchhHHHHHHhhcC-CceEEecccccccc-eEEEecCCCC-ChHHHHHHHHhhhcCChHHHH
Q 036525 543 CHELFQKGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIEPKFKTAG-FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEI 619 (783)
Q Consensus 543 ~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~-~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~ 619 (783)
++++|.+|+ +||++.+...+.+++++.. ..+.++.......+ ++++++|++| +++.||++|.+|.++|.+++|
T Consensus 154 ~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i 229 (246)
T 4eq9_A 154 IMVRLSDGQ----FDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKL 229 (246)
T ss_dssp HHHHHHTTS----SSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHcCC----ceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999999999 9999999999999888764 34888877666665 8899999986 999999999999999999999
Q ss_pred HHHhcCC
Q 036525 620 EDAWFKK 626 (783)
Q Consensus 620 ~~kw~~~ 626 (783)
.+||++.
T Consensus 230 ~~k~~~~ 236 (246)
T 4eq9_A 230 SKQFFGD 236 (246)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 9999974
No 59
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.63 E-value=1.2e-15 Score=153.02 Aligned_cols=219 Identities=19% Similarity=0.294 Sum_probs=163.6
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+. ..+|| .+.+ + +++.|+++|+++.+++++|++.... ..+|..++.+|.+|++|++++++..
T Consensus 3 ~~l~v~~~~~~~P~---~~~~-~------g~~~G~~~dl~~~~~~~~g~~~~~~-~~~~~~~~~~l~~g~~D~~~~~~~~ 71 (226)
T 1wdn_A 3 KKLVVATDTAFVPF---EFKQ-G------DLYVGFDVDLWAAIAKELKLDYELK-PMDFSGIIPALQTKNVDLALAGITI 71 (226)
T ss_dssp -CEEEEEESSBTTT---BEEE-T------TEEESHHHHHHHHHHHHHTCCEEEE-EECGGGHHHHHHTTSSSEEEEEEEC
T ss_pred ceEEEEECCCCCCe---eEec-C------CcEEEeeHHHHHHHHHHhCCEEEEE-ECCHHHHHHHHhCCCCCEEEEcCcC
Confidence 57899996 44554 4432 2 6799999999999999999883222 2479999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
+++|.+.++|+.||+... ..++.+...+.+..
T Consensus 72 ~~~r~~~~~~~~p~~~~~-----------------------------~~~~~~~~~~~i~~------------------- 103 (226)
T 1wdn_A 72 TDERKKAIDFSDGYYKSG-----------------------------LLVMVKANNNDVKS------------------- 103 (226)
T ss_dssp CHHHHTTSEECSCCEEEE-----------------------------EEEEEETTCCSCSS-------------------
T ss_pred CHHHhCccccccchhcCc-----------------------------eEEEEeCCCCCCCC-------------------
Confidence 999999999999998763 11222222111110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
+....++-+ .+..|+....+++.. ++..++..+.+..+++++|.
T Consensus 104 -----~~dL~g~~i------------------------------~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~ 147 (226)
T 1wdn_A 104 -----VKDLDGKVV------------------------------AVKSGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELG 147 (226)
T ss_dssp -----STTTTTCEE------------------------------EEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHH
T ss_pred -----HHHhCCCEE------------------------------EEEcCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHH
Confidence 000001100 222366666676664 34456778899999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcC-CceEEecccccccceEEEecCCC-CChHHHHHHHHhhhcCChHHHHHHHhcCC
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIEPKFKTAGFGFVFPLHS-PLVHDVSKAILNVTEGDKMKEIEDAWFKK 626 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~s-pl~~~in~~il~l~e~G~~~~~~~kw~~~ 626 (783)
+|+ +||++.+...+.+++++.. ..+.+++..+...+++++++|++ .+.+.+|++|.++.++|.++++.+||++.
T Consensus 148 ~g~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (226)
T 1wdn_A 148 TNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGT 223 (226)
T ss_dssp TTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSS
T ss_pred cCC----cCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 999 9999999999888887763 34777777777778999999998 59999999999999999999999999975
Q ss_pred C
Q 036525 627 H 627 (783)
Q Consensus 627 ~ 627 (783)
.
T Consensus 224 ~ 224 (226)
T 1wdn_A 224 E 224 (226)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.63 E-value=8.4e-16 Score=158.38 Aligned_cols=220 Identities=15% Similarity=0.191 Sum_probs=162.3
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceeee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~t 389 (783)
++|+|++.. .|+||.+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.|
T Consensus 29 ~~l~v~~~~--~~~P~~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~t 99 (259)
T 4dz1_A 29 RTLNVAVSP--ASPPMLFKSA-----D-GKLQGIDLELFSSYCQSRHCKLNITE-YAWDGMLGAVASGQADVAFSGISIT 99 (259)
T ss_dssp CEEEEEECC--CBTTTBEECT-----T-CCEESHHHHHHHHHHHHHTCEEEEEE-CCHHHHHHHHHHTSSSEEEEEEECC
T ss_pred CeEEEEECC--CCCCeEEECC-----C-CCEEEeHHHHHHHHHHHhCCeEEEEE-cCHHHHHHHHhCCCCCEEEECCcCC
Confidence 789999963 2334444332 2 78999999999999999998833222 3899999999999999999999999
Q ss_pred cccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCC-CCCCCccCccchhHHHHHHHhhh
Q 036525 390 FNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIND-DFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 390 ~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
++|.+.++||.||+..+. .++.+..+. .+..
T Consensus 100 ~~r~~~~~fs~p~~~~~~-----------------------------~~~~~~~~~~~i~~------------------- 131 (259)
T 4dz1_A 100 DKRKKVIDFSEPYYINSF-----------------------------YLVSMANHKITLNN------------------- 131 (259)
T ss_dssp HHHHTTEEECCCSEEEEE-----------------------------EEEEETTSCCCCCS-------------------
T ss_pred HHHhhccccccchhhCce-----------------------------EEEEEcCCCCCCCC-------------------
Confidence 999999999999987630 112222111 1110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhc----CCCc-ccceecCChhHH
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQL----GFDE-RKLVVYNSPEDC 543 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~----~~~~-~~~~~~~~~~~~ 543 (783)
.....++. -.+..|+....+++.. +++. .++..+++.+++
T Consensus 132 -----~~dL~g~~------------------------------v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 176 (259)
T 4dz1_A 132 -----LNELNKYS------------------------------IGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNET 176 (259)
T ss_dssp -----GGGGGGSC------------------------------EEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHH
T ss_pred -----HHHhCCCE------------------------------EEEeCCcHHHHHHHHhcccccccccceeEecCCHHHH
Confidence 00111111 1233366666666543 2222 577889999999
Q ss_pred HHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHh
Q 036525 544 HELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAW 623 (783)
Q Consensus 544 ~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw 623 (783)
+++|.+|+ +||++.+...+.+++++....+..........+++++++|+++|++.||++|.+ ..++.++++.++|
T Consensus 177 ~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~ 251 (259)
T 4dz1_A 177 MADLKNGN----LDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSW 251 (259)
T ss_dssp HHHHHHTS----CSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHcCC----CCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHH
Confidence 99999999 999999999888877765444666666666788999999999999999999999 8889999999999
Q ss_pred cCC
Q 036525 624 FKK 626 (783)
Q Consensus 624 ~~~ 626 (783)
...
T Consensus 252 ~~~ 254 (259)
T 4dz1_A 252 MKH 254 (259)
T ss_dssp TCC
T ss_pred Hhh
Confidence 964
No 61
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.62 E-value=1.3e-15 Score=158.10 Aligned_cols=218 Identities=14% Similarity=0.200 Sum_probs=159.1
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+|++. ..||| .+.+.+ ++. +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 21 ~~l~v~~~~~~pP~---~~~~~~--~~~-g~~~G~~~dl~~~i~~~~g~~v~~~~-~~~~~~~~~l~~G~~D~~~~~~~~ 93 (271)
T 2iee_A 21 GKIVVATSGTLYPT---SYHDTD--SGS-DKLTGYEVEVVREAAKRLGLKVEFKE-MGIDGMLTAVNSGQVDAAANDIDV 93 (271)
T ss_dssp TEEEEEECSCBTTT---BEEETT--TTC-CEEECHHHHHHHHHHHHTTCEEEEEE-CCSTTHHHHHHHTSSSEECSSCBC
T ss_pred CeEEEEECCCCCCe---eEeCCC--CCC-CCceeeHHHHHHHHHHHcCCeEEEEE-CCHHHHHHHHHCCCcCEEEeCCcC
Confidence 78999996 44454 444322 233 67999999999999999998832222 379999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCC-CCCCCccCccchhHHHHHHHhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIND-DFRGPAKHQVGTSFWFSFSTMV 467 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 467 (783)
|++|.+.++||.||+... ..++.++..+ .+.
T Consensus 94 t~~r~~~~~fs~p~~~~~-----------------------------~~l~~~~~~~~~i~------------------- 125 (271)
T 2iee_A 94 TKDREEKFAFSTPYKYSY-----------------------------GTAIVRKDDLSGIK------------------- 125 (271)
T ss_dssp CHHHHTTEEECCCSEEEE-----------------------------EEEEECTTTGGGCS-------------------
T ss_pred ChhhccceEEeecceeCC-----------------------------eEEEEECCCCCCCC-------------------
Confidence 999999999999998763 0122222110 000
Q ss_pred hcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHH--HH
Q 036525 468 FSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDC--HE 545 (783)
Q Consensus 468 ~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~--~~ 545 (783)
.+....++. -.+..|+....+++..+. ++..+.+..++ ++
T Consensus 126 -----~~~dL~g~~------------------------------i~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~ 167 (271)
T 2iee_A 126 -----TLKDLKGKK------------------------------AAGAATTVYMEVARKYGA---KEVIYDNATNEQYLK 167 (271)
T ss_dssp -----SGGGGTTCE------------------------------EESCTTSHHHHHHHHTTC---EEEECSSCCHHHHHH
T ss_pred -----CHHHhCCCE------------------------------EEEeCCccHHHHHHHcCC---ceEEeCChhhHHHHH
Confidence 000111111 123337777777776544 77788898988 99
Q ss_pred HHhcCcccCceeEEecchhHHHHHHh-hc-CCceEEe-cccccccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHH
Q 036525 546 LFQKGSANGGIAAALDEIPYMKLLIG-QH-CSKYTMI-EPKFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIED 621 (783)
Q Consensus 546 ~l~~g~~~~g~~a~~~~~~~~~~~~~-~~-c~~l~~v-~~~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~ 621 (783)
+|.+|+ +| ++.+...+.+++. +. ...+.++ +.++...+++++++|++| +++.||++|.+|.++|.++++.+
T Consensus 168 ~L~~Gr----vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~ 242 (271)
T 2iee_A 168 DVANGR----TD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSK 242 (271)
T ss_dssp HHHHTS----SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHcCC----cc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999 99 6666555555554 44 2357777 677778889999999986 99999999999999999999999
Q ss_pred HhcC
Q 036525 622 AWFK 625 (783)
Q Consensus 622 kw~~ 625 (783)
||+.
T Consensus 243 k~~~ 246 (271)
T 2iee_A 243 QFFN 246 (271)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 9997
No 62
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.61 E-value=6.6e-16 Score=156.65 Aligned_cols=220 Identities=15% Similarity=0.197 Sum_probs=157.7
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+. ..+|| .+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 4 ~~l~v~~~~~~~P~---~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 73 (239)
T 1lst_A 4 QTVRIGTDTTYAPF---SSKDA-----K-GEFIGFDIDLGNEMCKRMQVKCTWVA-SDFDALIPSLKAKKIDAIISSLSI 73 (239)
T ss_dssp SEEEEEECSCBTTT---BEECT-----T-CCEESHHHHHHHHHHHHHTCEEEEEE-CCGGGHHHHHHTTSCSEECSSCBC
T ss_pred ceEEEEECCCcCCe---eEECC-----C-CCEeeEHHHHHHHHHHHHCCeEEEEe-CCHHHHHHHHhCCCCCEEEECcCc
Confidence 68999993 34454 44332 2 77999999999999999998832222 489999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
|++|.+.++||.||+... ..++.++..+... . +.-|
T Consensus 74 t~~r~~~~~~s~p~~~~~-----------------------------~~l~~~~~~~~~~-----~--------~~dL-- 109 (239)
T 1lst_A 74 TDKRQQEIAFSDKLYAAD-----------------------------SRLIAAKGSPIQP-----T--------LESL-- 109 (239)
T ss_dssp CHHHHHHCEECSCSBCCC-----------------------------EEEEEETTCCCCS-----S--------HHHH--
T ss_pred CHHHhhceeecccceeCc-----------------------------eEEEEeCCCCCCC-----C--------HHHh--
Confidence 999999999999998763 0122222211000 0 0000
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCC-CcccceecCChhHHHHHH
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGF-DERKLVVYNSPEDCHELF 547 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l 547 (783)
.++ .-.+..|+....++++... +..++..+.+..+++++|
T Consensus 110 ---------~g~------------------------------~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 150 (239)
T 1lst_A 110 ---------KGK------------------------------HVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDL 150 (239)
T ss_dssp ---------TTC------------------------------EEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHH
T ss_pred ---------CCC------------------------------EEEEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHH
Confidence 000 0022236666666655321 234677889999999999
Q ss_pred hcCcccCceeEEecchhHHHH-HHhhc-CCceEEecccccc-----cceEEEecCCCC-ChHHHHHHHHhhhcCChHHHH
Q 036525 548 QKGSANGGIAAALDEIPYMKL-LIGQH-CSKYTMIEPKFKT-----AGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEI 619 (783)
Q Consensus 548 ~~g~~~~g~~a~~~~~~~~~~-~~~~~-c~~l~~v~~~~~~-----~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~ 619 (783)
.+|+ +|+++.+...+.+ ++.+. ...+.+++.++.. .+++++++|+++ +++.+|++|.++.++|.++++
T Consensus 151 ~~G~----vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i 226 (239)
T 1lst_A 151 TAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKM 226 (239)
T ss_dssp HTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HcCC----CCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHH
Confidence 9999 9999999887754 44443 2347777665543 368899999987 999999999999999999999
Q ss_pred HHHhcCC
Q 036525 620 EDAWFKK 626 (783)
Q Consensus 620 ~~kw~~~ 626 (783)
.+||++.
T Consensus 227 ~~k~~~~ 233 (239)
T 1lst_A 227 AKKYFDF 233 (239)
T ss_dssp HHTTCSS
T ss_pred HHHHcCC
Confidence 9999974
No 63
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.61 E-value=2.1e-15 Score=151.72 Aligned_cols=215 Identities=18% Similarity=0.328 Sum_probs=161.2
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+|++. ..+|| .+.+. + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|++++++..
T Consensus 6 ~~l~v~~~~~~~P~---~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 75 (229)
T 2y7i_A 6 RTLHFGTSATYAPY---EFVDA-----D-NKIVGFDIDVANAVCKEMQAECSFTN-QSFDSLIPSLRFKKFDAVIAGMDM 75 (229)
T ss_dssp CEEEEEECCCBTTT---BEECT-----T-SCEESHHHHHHHHHHHHTTCEEEEEE-CCGGGHHHHHHTTSCSEECSSCBC
T ss_pred CcEEEEeCCCcCCc---eEECC-----C-CCCcceeHHHHHHHHHHhCCeEEEEE-cCHHHHHHHHhCCCceEEEecCcc
Confidence 68999995 34554 44322 2 77999999999999999998832222 479999999999999999988999
Q ss_pred ecccceeeecccccccc-cccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhh
Q 036525 389 VFNRSNYVGFTLPYTES-GKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMV 467 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s-~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (783)
+++|.+.+.|+.||+.. .. .++.+... +..
T Consensus 76 ~~~r~~~~~~s~p~~~~~~~-----------------------------~~~~~~~~--~~~------------------ 106 (229)
T 2y7i_A 76 TPKREQQVSFSQPYYEGLSA-----------------------------VVVTRKGA--YHT------------------ 106 (229)
T ss_dssp CHHHHTTSEECSCSBCCCCE-----------------------------EEEEETTS--CCS------------------
T ss_pred CHHHhcceeeccccccCCcE-----------------------------EEEEeCCC--CCC------------------
Confidence 99999999999999865 30 11222211 110
Q ss_pred hcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHH
Q 036525 468 FSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELF 547 (783)
Q Consensus 468 ~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 547 (783)
+....++.+ .+..|+....++++. .+..++..+.+..+++++|
T Consensus 107 ------~~dL~g~~v------------------------------~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l 149 (229)
T 2y7i_A 107 ------FADLKGKKV------------------------------GLENGTTHQRYLQDK-QQAITPVAYDSYLNAFTDL 149 (229)
T ss_dssp ------TGGGTTCEE------------------------------EEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHH
T ss_pred ------HHHHCCCEE------------------------------EEecCCcHHHHHHHh-CCCCeEEecCCHHHHHHHH
Confidence 000001000 222366666666654 3445778889999999999
Q ss_pred hcCcccCceeEEecchhHHHHHHhhcCCceEEeccccc-----ccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHH
Q 036525 548 QKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFK-----TAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIED 621 (783)
Q Consensus 548 ~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~-----~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~ 621 (783)
.+|+ +|+++.+...+.+++++.. ++++++..+. ..+++++++|++| +++.||++|.++.++|.++++.+
T Consensus 150 ~~gr----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~ 224 (229)
T 2y7i_A 150 KNNR----LEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQE 224 (229)
T ss_dssp HTTS----CSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HcCC----cCEEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999 9999999999999888876 4888776553 2478899999986 99999999999999999999999
Q ss_pred HhcC
Q 036525 622 AWFK 625 (783)
Q Consensus 622 kw~~ 625 (783)
||++
T Consensus 225 k~~~ 228 (229)
T 2y7i_A 225 KWFT 228 (229)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 9985
No 64
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.60 E-value=1.6e-15 Score=152.19 Aligned_cols=217 Identities=18% Similarity=0.332 Sum_probs=160.2
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceeee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIV 389 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~t 389 (783)
++|+||+...+|| ... . + +++.|+++|+++.+++++|++.......+|..++.+|.+|++|++++++..+
T Consensus 3 ~~l~v~~~~~~P~---~~~-~-----~-g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~ 72 (228)
T 2pyy_A 3 QPLLVATRVIPPF---VLS-N-----K-GELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISIT 72 (228)
T ss_dssp -CEEEEECCBTTT---BBC-C---------CBSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHTTSCSEECSSCBCC
T ss_pred ceEEEEecCCCCe---EEe-c-----C-CceEEEeHHHHHHHHHHhCCcEEEEEcCCHHHHHHHHHCCCcCEEEeccccC
Confidence 5799999765555 432 2 2 6789999999999999999883222223699999999999999999999999
Q ss_pred cccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCC---CCCCCccCccchhHHHHHHHh
Q 036525 390 FNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIND---DFRGPAKHQVGTSFWFSFSTM 466 (783)
Q Consensus 390 ~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 466 (783)
++|.+.+.|+.||+... ..++.++.++ .+.
T Consensus 73 ~~r~~~~~~~~p~~~~~-----------------------------~~~~~~~~~~~~~~~~------------------ 105 (228)
T 2pyy_A 73 AEREQNFDFSLPIFASG-----------------------------LQIMVRNLESGTGDIR------------------ 105 (228)
T ss_dssp HHHHHHSEECSCSEEEE-----------------------------EEEEEEC-----CCCC------------------
T ss_pred HHHHccceecccchhcc-----------------------------eEEEEECCccccCCcC------------------
Confidence 99999999999998763 0122222211 000
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHH
Q 036525 467 VFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHEL 546 (783)
Q Consensus 467 ~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (783)
.+....++- -.+..|+....++++.+. ++..+.+..+++++
T Consensus 106 ------~~~dL~g~~------------------------------i~~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~ 146 (228)
T 2pyy_A 106 ------SIDDLPGKV------------------------------VATTAGSTAATYLREHHI---SVLEVPKIEEAYKA 146 (228)
T ss_dssp ------SGGGCTTCE------------------------------EEEETTSHHHHHHHHTTC---EEEEESSHHHHHHH
T ss_pred ------CHHHcCCCe------------------------------EEEEcCcHHHHHHHHcCC---ceEecCCHHHHHHH
Confidence 000000100 022236666677776544 66778999999999
Q ss_pred HhcCcccCceeEEecchhHHHHHHhhcC-CceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhcC
Q 036525 547 FQKGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 625 (783)
Q Consensus 547 l~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~~ 625 (783)
|.+|+ +|+++.+...+.+.+.+.. ..+.+++..+...+++++++|++++.+.+|++|.++.++|.++++.+||+.
T Consensus 147 l~~g~----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 147 LQTKK----ADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHcCC----CCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 99999 9999999998888887763 247777777777788999999999999999999999999999999999997
Q ss_pred C
Q 036525 626 K 626 (783)
Q Consensus 626 ~ 626 (783)
.
T Consensus 223 ~ 223 (228)
T 2pyy_A 223 P 223 (228)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.58 E-value=2.9e-15 Score=153.79 Aligned_cols=221 Identities=15% Similarity=0.182 Sum_probs=163.0
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCC-CCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYA-PDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~-~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+||+...+|| .+.+. + +++.|+++|+++++++++|++ ..... .+|..++.+|.+|++|+++++++.
T Consensus 13 ~~l~v~~~~~~P~---~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 82 (257)
T 2q88_A 13 GFARIAIANEPPF---TAVGA-----D-GKVSGAAPDVAREIFKRLGVADVVASI-SEYGAMIPGLQAGRHDAITAGLFM 82 (257)
T ss_dssp TEEEEEECCCTTT---CEECT-----T-CCEESHHHHHHHHHHHHTTCCEEEEEE-CCGGGHHHHHHTTSCSEECSCCBC
T ss_pred CeEEEEcCCCCCe---eEECC-----C-CCcccccHHHHHHHHHHcCCCeeeEEe-CCHHHHHHHHHCCCcCEEEecccC
Confidence 7899999755555 44322 2 789999999999999999987 43222 469999999999999999989999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCC-CCCCCccCccchhHHHHHHHhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIND-DFRGPAKHQVGTSFWFSFSTMV 467 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 467 (783)
|++|.+.++||.||+... ..++.++..+ .++. +.-|.
T Consensus 83 t~~r~~~~~~s~p~~~~~-----------------------------~~~~~~~~~~~~i~~-------------~~dL~ 120 (257)
T 2q88_A 83 KPERCAAVAYSQPILCDA-----------------------------EAFALKKGNPLGLKS-------------YKDIA 120 (257)
T ss_dssp CHHHHTTSEECSCCCEEC-----------------------------EEEEEETTCTTCCCB-------------HHHHH
T ss_pred CHHHHhccccccchhcCc-----------------------------eEEEEECCCccCCCC-------------HHHHh
Confidence 999999999999998763 0122222211 1110 00000
Q ss_pred hcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHH
Q 036525 468 FSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELF 547 (783)
Q Consensus 468 ~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 547 (783)
.. +...-.+..|+....++++.+++..++..+++..+++++|
T Consensus 121 ~~--------------------------------------~g~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 162 (257)
T 2q88_A 121 DN--------------------------------------PDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKML 162 (257)
T ss_dssp HC--------------------------------------TTCCEEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHH
T ss_pred cc--------------------------------------CCceEEEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHH
Confidence 00 0011123337777778887777777888999999999999
Q ss_pred hcCcccCceeEEecchhHHHHHHhhcC-CceEEeccccc---ccceEEEecCCC-CChHHHHHHHHhhhcCChHHHHHHH
Q 036525 548 QKGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIEPKFK---TAGFGFVFPLHS-PLVHDVSKAILNVTEGDKMKEIEDA 622 (783)
Q Consensus 548 ~~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~~~~~---~~~~~~~~~k~s-pl~~~in~~il~l~e~G~~~~~~~k 622 (783)
.+|+ +|+++.+...+.+++++.. ..+..+.+ +. ..+++++++|++ .+++.||++|.++.++|.++++.+|
T Consensus 163 ~~gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k 237 (257)
T 2q88_A 163 QDGR----IDVYSLPVLSINDLVSKANDPNVEVLAP-VEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEP 237 (257)
T ss_dssp HHTS----CSEEEEEHHHHHHHHHHHCCTTEEEECS-CBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGG
T ss_pred HcCC----CcEEEcCHHHHHHHHHhCCCcceeeecc-cCCccccceEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 9999 9999999999999888764 34555443 32 245678999986 4999999999999999999999999
Q ss_pred hcC
Q 036525 623 WFK 625 (783)
Q Consensus 623 w~~ 625 (783)
|..
T Consensus 238 ~~~ 240 (257)
T 2q88_A 238 YGF 240 (257)
T ss_dssp GTC
T ss_pred hCC
Confidence 953
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.57 E-value=1e-14 Score=150.54 Aligned_cols=217 Identities=14% Similarity=0.176 Sum_probs=164.9
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+|++. ..+|| ...+. + +++.|+++|+++.+++++|++..... .+|..++.+|.+|++|+++++++.
T Consensus 31 ~~l~v~~~~~~~P~---~~~~~-----~-g~~~G~~~dl~~~i~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 100 (268)
T 3qax_A 31 RIWIVGTNATYPPF---EYVDA-----Q-GEVVGFDIDLAKAISEKLGKQLEVRE-FAFDALILNLKKHRIDAILAGMSI 100 (268)
T ss_dssp CEEEEEECSCBTTT---BEECT-----T-SCEESHHHHHHHHHHHHHTCEEEEEE-CCGGGHHHHHHHTSSSEECSCCBC
T ss_pred CeEEEEECCCCCCc---eEECC-----C-CCEEEEEHHHHHHHHHHhCCeEEEEe-cCHHHHHHHHhCCCccEEeecCcc
Confidence 68999995 33444 44322 2 78999999999999999998832222 379999999999999999999999
Q ss_pred ecccceeeecccccc--cccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHh
Q 036525 389 VFNRSNYVGFTLPYT--ESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTM 466 (783)
Q Consensus 389 t~~R~~~vdFs~p~~--~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (783)
+++|.+.++| .||+ ..+ ..++.+..+..+..
T Consensus 101 ~~~r~~~~~~-~p~~~~~~~-----------------------------~~~~~~~~~~~i~~----------------- 133 (268)
T 3qax_A 101 TPSRQKEIAL-LPYYGDEVQ-----------------------------ELMVVSKRSLETPV----------------- 133 (268)
T ss_dssp CHHHHTTSEE-EEEECCCBC-----------------------------EEEEEEETTSCSCC-----------------
T ss_pred CHhHhcceee-ecceecccc-----------------------------eEEEEECCCCCCCC-----------------
Confidence 9999999999 9998 542 01222222111110
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHH
Q 036525 467 VFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHEL 546 (783)
Q Consensus 467 ~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (783)
+....++. -.+..|+....++.. .+..++..+++.++++++
T Consensus 134 -------~~dL~g~~------------------------------i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~ 174 (268)
T 3qax_A 134 -------LPLTQYSS------------------------------VAVQTGTYQEHYLLS--QPGICVRSFDSTLEVIME 174 (268)
T ss_dssp -------CCGGGSSC------------------------------EEEETTSHHHHHHHT--STTCCEEEESCHHHHHHH
T ss_pred -------HHHhCCCE------------------------------EEEecCcHHHHHHHh--CCCceEEecCCHHHHHHH
Confidence 00001111 123336777777665 445677889999999999
Q ss_pred HhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccc----eEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHH
Q 036525 547 FQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAG----FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIED 621 (783)
Q Consensus 547 l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~----~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~ 621 (783)
|.+|+ +||++.+...+.+++++... +.+++..+...+ ++++++|++| +++.+|++|.++.++|.++++.+
T Consensus 175 l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~ 249 (268)
T 3qax_A 175 VRYGK----SPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTK 249 (268)
T ss_dssp HHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHcCC----CCEEEecHHHHHHHHHhCCC-cEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 99999 99999999999999888765 777877777777 9999999986 99999999999999999999999
Q ss_pred HhcCCC
Q 036525 622 AWFKKH 627 (783)
Q Consensus 622 kw~~~~ 627 (783)
||+...
T Consensus 250 k~~~~~ 255 (268)
T 3qax_A 250 KWQLSE 255 (268)
T ss_dssp HTTCSC
T ss_pred HHcCCc
Confidence 999743
No 67
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.56 E-value=1.4e-14 Score=151.45 Aligned_cols=218 Identities=17% Similarity=0.213 Sum_probs=163.7
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee-
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI- 388 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~- 388 (783)
++|+|++.. .|+||.+.+. + +++.|+++|+++.+++++|++..... .+|..++.+|.+|++|++++++.+
T Consensus 57 ~~l~v~~~~--~~~P~~~~~~-----~-g~~~G~~~dl~~~i~~~~G~~v~~~~-~~~~~~~~~l~~G~~D~~~~~~~~~ 127 (283)
T 2yln_A 57 GTVTVGTEG--TYAPFTYHDK-----D-GKLTGYDVEVTRAVAEKLGVKVEFKE-TQWDSMMAGLKAGRFDVVANQVGLT 127 (283)
T ss_dssp CEEEEEECS--EETTTEEECT-----T-SCEESHHHHHHHHHHHHHTCEEEEEE-CCGGGHHHHHHHTSCSEECSSCCCC
T ss_pred CeEEEEECC--CCCCeeEECC-----C-CCEeeehHHHHHHHHHHcCCceEEEE-CCHHHHHHHHHCCCcCEEEecCccC
Confidence 689999953 2445555432 2 77999999999999999998732222 349999999999999999988888
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
+.+|.+.++|+.||+... ..++.++..+ ++
T Consensus 128 t~~r~~~~~~~~p~~~~~-----------------------------~~l~~~~~~~-i~-------------------- 157 (283)
T 2yln_A 128 SPERQATFDKSEPYSWSG-----------------------------AVLVAHNDSN-IK-------------------- 157 (283)
T ss_dssp SHHHHHHEEECSCSEEEC-----------------------------EEEEEETTCS-CC--------------------
T ss_pred ChhhhcceEeccCeeeec-----------------------------EEEEEECCCC-CC--------------------
Confidence 999999999999998763 0112222111 00
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHHh
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQ 548 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 548 (783)
.+....++.+ .+..|+....+++..+. ++..+.+..+++++|.
T Consensus 158 ----s~~dL~G~~v------------------------------~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~ 200 (283)
T 2yln_A 158 ----SIADIKGVKT------------------------------AQSLTSNYGEKAKAAGA---QLVPVDGLAQSLTLIE 200 (283)
T ss_dssp ----SGGGCTTSEE------------------------------EECTTSHHHHHHHHTTC---EEEECSSHHHHHHHHH
T ss_pred ----CHHHhCCCEE------------------------------EEecCchHHHHHHHcCC---eEEEeCCHHHHHHHHH
Confidence 0001111111 23336666677766533 6778889999999999
Q ss_pred cCcccCceeEEecchhHHHHHHhhcC-CceEEec-cccc-ccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 549 KGSANGGIAAALDEIPYMKLLIGQHC-SKYTMIE-PKFK-TAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 549 ~g~~~~g~~a~~~~~~~~~~~~~~~c-~~l~~v~-~~~~-~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
+|+ +||++.+...+.+++.+.. ..+.+++ ..+. ..+++++++|+++ +++.||++|.++.++|.++++.+||+
T Consensus 201 ~g~----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~ 276 (283)
T 2yln_A 201 QKR----ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFF 276 (283)
T ss_dssp TTS----CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCC----CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHc
Confidence 999 9999999999988887763 2478887 7777 7788999999975 89999999999999999999999999
Q ss_pred CCC
Q 036525 625 KKH 627 (783)
Q Consensus 625 ~~~ 627 (783)
+..
T Consensus 277 ~~~ 279 (283)
T 2yln_A 277 GKD 279 (283)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 68
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.55 E-value=2.6e-14 Score=148.20 Aligned_cols=217 Identities=18% Similarity=0.280 Sum_probs=161.0
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++|+|++. ..+| |.+.+ + +++.|+++|+++++++++|++..... .+|..++.+|.+|++|++++++..
T Consensus 42 ~~l~v~~~~~~~P---~~~~~-~------g~~~G~~~dl~~~i~~~~g~~v~~~~-~~~~~~~~~l~~G~~D~~~~~~~~ 110 (272)
T 2pvu_A 42 KKVVVGTDAAFAP---FEYMQ-K------GKIVGFDVDLLDAVMKAAGLDYELKN-IGWDPLFASLQSKEVDMGISGITI 110 (272)
T ss_dssp CCEEEEECCCBTT---TBEEE-T------TEEESHHHHHHHHHHHHHTCCEEEEE-CCHHHHHHHHHHTSSSEECSSCBC
T ss_pred CeEEEEECCCCCC---eEEec-C------CeEEEEHHHHHHHHHHHhCCceEEEE-CCHHHHHHHHhCCCCCEEEeCCcC
Confidence 78999996 3444 44432 2 77999999999999999998832211 359999999999999999988999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVF 468 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (783)
+++|.+.++|+.||+... ..++.+...+ +..
T Consensus 111 ~~~r~~~~~~s~p~~~~~-----------------------------~~l~~~~~~~-i~~------------------- 141 (272)
T 2pvu_A 111 TDERKQSYDFSDPYFEAT-----------------------------QVILVKQGSP-VKN------------------- 141 (272)
T ss_dssp CHHHHTTEEECSCCEEEC-----------------------------EEEEEETTCC-CCS-------------------
T ss_pred CHHHHhcCccchhhhccc-----------------------------eEEEEECCCC-CCC-------------------
Confidence 999999999999998763 0122222211 110
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhc-CCCcccceecCChhHHHHHH
Q 036525 469 SQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQL-GFDERKLVVYNSPEDCHELF 547 (783)
Q Consensus 469 ~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l 547 (783)
+....++-+ .+..|+....++++. + ...++..+.+..+++++|
T Consensus 142 -----~~dL~g~~i------------------------------~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l 185 (272)
T 2pvu_A 142 -----ALDLKGKTI------------------------------GVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMEL 185 (272)
T ss_dssp -----GGGGTTSCE------------------------------EEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHH
T ss_pred -----HHHhCCCeE------------------------------EEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHH
Confidence 000001000 222255555666553 3 345677889999999999
Q ss_pred hcCcccCceeEEecchhHHHHHHhhcCC-ceEEecccc--cccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 548 QKGSANGGIAAALDEIPYMKLLIGQHCS-KYTMIEPKF--KTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 548 ~~g~~~~g~~a~~~~~~~~~~~~~~~c~-~l~~v~~~~--~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
.+|+ +|+++.+...+.+++++... ++.+++... ...+++++++|+..+++.||++|.++.++|.++++.+||+
T Consensus 186 ~~G~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 261 (272)
T 2pvu_A 186 LNGG----VDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWF 261 (272)
T ss_dssp HTTS----CSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HcCC----ccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 9999 99999999999888877632 477777654 5667899999996699999999999999999999999999
Q ss_pred CC
Q 036525 625 KK 626 (783)
Q Consensus 625 ~~ 626 (783)
..
T Consensus 262 ~~ 263 (272)
T 2pvu_A 262 GK 263 (272)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 69
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.54 E-value=1.6e-14 Score=149.05 Aligned_cols=221 Identities=18% Similarity=0.251 Sum_probs=162.9
Q ss_pred ceEEEEec-ccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 310 LKLRIGVP-VKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 310 ~~L~V~v~-~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
++++|++. ..+|| ..... .+++ +++.|+++|+++.+++++|++..... .+|..++.+|.+|++|++++++..
T Consensus 39 ~~l~v~~~~~~~P~---~~~~~--~~~~-g~~~G~~~dl~~~~~~~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~ 111 (269)
T 4i62_A 39 GKLVVALNPDFAPF---EYQKV--VDGK-NQIVGSDIELAKAIATELGVELELSP-MSFDNVLASVQSGKADLAISGVSK 111 (269)
T ss_dssp TEEEEEECSCBTTT---BEEEE--ETTE-EEEESHHHHHHHHHHHHHTCEEEEEE-CCHHHHHHHHHTTSCSEECSSCBC
T ss_pred CeEEEEecCCCCCc---eeecc--cCCC-CcEeeecHHHHHHHHHHHCCceEEEE-cCHHHHHHHHhCCCccEEecCCcC
Confidence 68999996 33454 33110 0223 78999999999999999998833222 389999999999999999999999
Q ss_pred ecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccC-CCCCCCccCccchhHHHHHHHhh
Q 036525 389 VFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRIN-DDFRGPAKHQVGTSFWFSFSTMV 467 (783)
Q Consensus 389 t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 467 (783)
+++|.+.+.|+.||+.... .++.+..+ ..+..
T Consensus 112 ~~~r~~~~~~s~p~~~~~~-----------------------------~~~~~~~~~~~i~~------------------ 144 (269)
T 4i62_A 112 TDERSKVFDFSTPYYTAKN-----------------------------KLIVKKSDLATYQS------------------ 144 (269)
T ss_dssp CHHHHTTEEECSCCEECCE-----------------------------EEEEEGGGTTTCSS------------------
T ss_pred CHhHhhceecccchhhcce-----------------------------EEEEECCccccccC------------------
Confidence 9999999999999987630 12222211 11110
Q ss_pred hcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHHH
Q 036525 468 FSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELF 547 (783)
Q Consensus 468 ~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 547 (783)
+....++. -.+..|+....++... .+..++..+++.++++++|
T Consensus 145 ------~~dL~g~~------------------------------i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l 187 (269)
T 4i62_A 145 ------VNDLAQKK------------------------------VGAQKGSIQETMAKDL-LQNSSLVSLPKNGNLITDL 187 (269)
T ss_dssp ------GGGGC-CE------------------------------EEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHH
T ss_pred ------HHHhCCCe------------------------------EEEecCchHHHHHHHh-CCCCcEEecCCHHHHHHHH
Confidence 00011111 1233366677777654 4456788899999999999
Q ss_pred hcCcccCceeEEecchhHHHHHHhhcCCceEEeccccc---ccceEEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHh
Q 036525 548 QKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFK---TAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAW 623 (783)
Q Consensus 548 ~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~---~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw 623 (783)
.+|+ +||++.+.+.+.+++++... +.+....+. ..+++++++|++| +.+.||++|.++.++|.++++.+||
T Consensus 188 ~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~ 262 (269)
T 4i62_A 188 KSGQ----VDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDA 262 (269)
T ss_dssp HTTS----SSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HcCC----CCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 9999 99999999999888888764 555544433 6678999999986 9999999999999999999999999
Q ss_pred cCC
Q 036525 624 FKK 626 (783)
Q Consensus 624 ~~~ 626 (783)
++.
T Consensus 263 ~~~ 265 (269)
T 4i62_A 263 FKA 265 (269)
T ss_dssp HHH
T ss_pred hCC
Confidence 964
No 70
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.53 E-value=1.6e-14 Score=151.17 Aligned_cols=224 Identities=15% Similarity=0.186 Sum_probs=161.3
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhh----CC---CCCCCCCCCChHHHHHHHHcCeecEE
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPE----LP---YAPDGSSSGSYNDLIYQVFLGEFDAV 382 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~----l~---f~~~~~~~~~~~gli~~l~~g~~Di~ 382 (783)
++|+||+.. .++||.+.+. + +++.|+++|++++|++. +| ++.... ..+|..++.+|.+|++|++
T Consensus 17 ~~l~v~~~~--~~~P~~~~~~-----~-g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~-~~~~~~~~~~l~~g~~D~~ 87 (287)
T 2vha_A 17 GVIVVGHRE--SSVPFSYYDN-----Q-QKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLI-PITSQNRIPLLQNGTFDFE 87 (287)
T ss_dssp TEEEEEECS--EETTTEEECS-----S-SCEESHHHHHHHHHHHHHHHHTTCTTCEEEEE-ECCTTTHHHHHHTTSCSEE
T ss_pred CeEEEEEcC--CCCCceEECC-----C-CCcccccHHHHHHHHHHHHHhcCCCCceEEEE-ECCHHHHHHHHHCCCeeEE
Confidence 789999963 2334455432 2 77999999999999976 56 441111 2468899999999999999
Q ss_pred EeceeeecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHH
Q 036525 383 VGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFS 462 (783)
Q Consensus 383 ~~~~~~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (783)
+++++.+++|.+.++||.||+..+ ..++.+...+ ++.
T Consensus 88 ~~~~~~t~~r~~~~~~s~p~~~~~-----------------------------~~l~~~~~~~-i~s------------- 124 (287)
T 2vha_A 88 CGSTTNNVERQKQAAFSDTIFVVG-----------------------------TRLLTKKGGD-IKD------------- 124 (287)
T ss_dssp CSSCBCCHHHHTTCEEEEEEEEEE-----------------------------EEEEEETTSS-CCS-------------
T ss_pred eccccCCcchhhcccccceeeecc-----------------------------eEEEEECCCC-CCC-------------
Confidence 999999999999999999998763 0122222211 110
Q ss_pred HHHhhhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcC---CCcccceecCC
Q 036525 463 FSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLG---FDERKLVVYNS 539 (783)
Q Consensus 463 ~~~l~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~---~~~~~~~~~~~ 539 (783)
+....++.+ .+..|+....++.... ....+++.+.+
T Consensus 125 -----------l~dL~g~~v------------------------------~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 163 (287)
T 2vha_A 125 -----------FADLKGKAV------------------------------VVTSGTTSEVLLNKLNEEQKMNMRIISAKD 163 (287)
T ss_dssp -----------GGGGTTCEE------------------------------EEETTSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred -----------HHHcCCCEE------------------------------EEeCCCcHHHHHHHHhhccCCCceEEEcCC
Confidence 000000000 1222555544444321 12346778899
Q ss_pred hhHHHHHHhcCcccCceeEEecchhHHHHHHhhc--CCceEEecccccccceEEEecCCCC-ChHHHHHHHHhhhcCChH
Q 036525 540 PEDCHELFQKGSANGGIAAALDEIPYMKLLIGQH--CSKYTMIEPKFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKM 616 (783)
Q Consensus 540 ~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~--c~~l~~v~~~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~ 616 (783)
..+++++|.+|+ +|+++.+...+.+++++. ...+.+++..+...+++++++|+++ +++.||++|.++.++|.+
T Consensus 164 ~~~~~~~L~~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~ 239 (287)
T 2vha_A 164 HGDSFRTLESGR----AVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEA 239 (287)
T ss_dssp HHHHHHHHHTTS----CSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHcCC----eeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchH
Confidence 999999999999 999999999998888774 2358888877778889999999986 999999999999999999
Q ss_pred HHHHHHhcCCCCCC
Q 036525 617 KEIEDAWFKKHSSC 630 (783)
Q Consensus 617 ~~~~~kw~~~~~~c 630 (783)
+++.+||+.....|
T Consensus 240 ~~i~~k~~~~~~~~ 253 (287)
T 2vha_A 240 EKWFDKWFKNPIPP 253 (287)
T ss_dssp HHHHHHHHHSCBTT
T ss_pred HHHHHHHcCCCCCc
Confidence 99999999764333
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.51 E-value=3.1e-14 Score=149.40 Aligned_cols=218 Identities=15% Similarity=0.120 Sum_probs=162.9
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhC---CCCCCCCCCCChHHHHHHHHcCeecEEEece
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPEL---PYAPDGSSSGSYNDLIYQVFLGEFDAVVGDI 386 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l---~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~ 386 (783)
++|+|++.. .++||.+.+. + +...|+++|+++.+++++ |++.... ..+|..++.+|.+|++|++++++
T Consensus 44 ~~l~v~~~~--~~~P~~~~~~-----~-g~~~G~~~dl~~~i~~~~~~~g~~~~~~-~~~~~~~~~~l~~G~~D~~~~~~ 114 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYVDE-----K-GNNQGYDIALAKRIAKELFGDENKVQFV-LVEAANRVEFLKSNKVDIILANF 114 (292)
T ss_dssp SSEEEEECS--EETTTEEECT-----T-SCEESHHHHHHHHHHHHHHSCTTCEEEE-ECCGGGHHHHHHTTSCSEECSSC
T ss_pred CeEEEEECC--CCCCeeEECC-----C-CCEeeEhHHHHHHHHHHhccCCceEEEE-EcCHHHHHHHHhCCCeeEEeecC
Confidence 679999852 2444555432 2 779999999999999999 8872221 13589999999999999999889
Q ss_pred eeecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHh
Q 036525 387 TIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTM 466 (783)
Q Consensus 387 ~~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (783)
..+.+|.+.++|+.||+... ..++.+... .+..
T Consensus 115 ~~~~~r~~~~~~s~p~~~~~-----------------------------~~~~~~~~~-~i~~----------------- 147 (292)
T 1xt8_A 115 TQTPQRAEQVDFCSPYMKVA-----------------------------LGVAVPKDS-NITS----------------- 147 (292)
T ss_dssp BCCHHHHTTEEECCCCEEEE-----------------------------EEEEEETTC-CCCS-----------------
T ss_pred CCCcchhcceeeeccceecc-----------------------------eEEEEECCC-CCCC-----------------
Confidence 99999999999999998763 012222221 1110
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHH
Q 036525 467 VFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHEL 546 (783)
Q Consensus 467 ~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (783)
+....++-+ .+..|+....+++.. .+..++..+.+.++++++
T Consensus 148 -------~~dL~g~~i------------------------------~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 189 (292)
T 1xt8_A 148 -------VEDLKDKTL------------------------------LLNKGTTADAYFTQN-YPNIKTLKYDQNTETFAA 189 (292)
T ss_dssp -------SGGGTTSEE------------------------------EEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHH
T ss_pred -------HHHhCCCEE------------------------------EEeCCCcHHHHHHHh-CCCceEEEcCCHHHHHHH
Confidence 000011111 222366666666654 244567788999999999
Q ss_pred HhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccce-EEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 547 FQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGF-GFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 547 l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~-~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
|.+|+ +|+++.+...+.+++++..+ +.+++..+...++ +++++|++| +++.+|++|.++.++|.++++.+||+
T Consensus 190 L~~G~----vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 264 (292)
T 1xt8_A 190 LMDKR----GDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETL 264 (292)
T ss_dssp HHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHT
T ss_pred HHcCC----ccEEEecHHHHHHHHHhCCC-eEEcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhc
Confidence 99999 99999999999998888765 7787777777777 999999986 99999999999999999999999999
Q ss_pred CC
Q 036525 625 KK 626 (783)
Q Consensus 625 ~~ 626 (783)
..
T Consensus 265 ~~ 266 (292)
T 1xt8_A 265 KA 266 (292)
T ss_dssp GG
T ss_pred CC
Confidence 73
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.51 E-value=3.3e-14 Score=149.21 Aligned_cols=217 Identities=15% Similarity=0.178 Sum_probs=163.1
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhC---CCCCCCCCCCChHHHHHHHHcCeecEEEece
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPEL---PYAPDGSSSGSYNDLIYQVFLGEFDAVVGDI 386 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l---~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~ 386 (783)
++|+||+.. .|+||.+.+. + +++.|+++|+++.+++++ |++..... .+|..++.+|.+|++|++++++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~-----~-g~~~G~~~dl~~~i~~~~~~~g~~v~~~~-~~~~~~~~~l~~G~~D~~~~~~ 125 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDA-----N-GKNQGFDVEIAKDLAKDLLGSPDKVEFVL-TEAANRVEYVRSGKVDLILANF 125 (291)
T ss_dssp TCEEEEECS--EETTTEEECT-----T-SCEESHHHHHHHHHHHHHHSCGGGEEEEE-CCGGGHHHHHHTTSCSEECSSC
T ss_pred CeEEEEEcC--CCCCceEECC-----C-CCEeehHHHHHHHHHHHhccCCceEEEEE-ccHHHHHHHHhCCCeeEEEeCC
Confidence 679999852 2444554432 2 779999999999999999 87722211 3489999999999999999989
Q ss_pred eeecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHh
Q 036525 387 TIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTM 466 (783)
Q Consensus 387 ~~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (783)
..+.+|.+.++|+.||+... ..++.+... .+.
T Consensus 126 ~~~~~r~~~~~~~~p~~~~~-----------------------------~~l~~~~~~-~i~------------------ 157 (291)
T 2yjp_A 126 TQTPERAEAVDFADPYMKVA-----------------------------LGVVSPKNK-PIT------------------ 157 (291)
T ss_dssp BCCHHHHTTEEECCCCEEEC-----------------------------EEEEEETTS-CCC------------------
T ss_pred CCChHHHccceeccCeeecc-----------------------------eEEEEeCCC-CCC------------------
Confidence 99999999999999998763 012222221 111
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceecCChhHHHHH
Q 036525 467 VFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHEL 546 (783)
Q Consensus 467 ~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (783)
.+....++.+ .+..|+....++... ++..++..+.+..+++++
T Consensus 158 ------sl~dL~gk~v------------------------------~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 200 (291)
T 2yjp_A 158 ------DMAQLKDQTL------------------------------LVNKGTTADAFFTKS-HPEVKLLKFDQNTETFDA 200 (291)
T ss_dssp ------SGGGGTTSEE------------------------------EEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHH
T ss_pred ------CHHHhCCCEE------------------------------EEecCCcHHHHHHHh-CCCceEEEeCCHHHHHHH
Confidence 0001111111 222366666666654 244577788999999999
Q ss_pred HhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccce-EEEecCCCC-ChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 547 FQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGF-GFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 547 l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~-~~~~~k~sp-l~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
|.+|+ +||++.+.+.+.+++++... +.+++..+...++ +++++|++| +++.||++|.++.++|.++++.+||+
T Consensus 201 l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~ 275 (291)
T 2yjp_A 201 LKDGR----GVALAHDNALLWAWAKENPN-FEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTL 275 (291)
T ss_dssp HHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHT
T ss_pred HHcCC----ccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhc
Confidence 99999 99999999999998887765 8888877777888 999999986 99999999999999999999999999
Q ss_pred C
Q 036525 625 K 625 (783)
Q Consensus 625 ~ 625 (783)
.
T Consensus 276 ~ 276 (291)
T 2yjp_A 276 L 276 (291)
T ss_dssp H
T ss_pred c
Confidence 6
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.21 E-value=6.4e-12 Score=128.52 Aligned_cols=213 Identities=13% Similarity=0.195 Sum_probs=149.1
Q ss_pred ceEEEEecccCCccccEEEeeCCCCCCCccEEEeeHHHHHHHhhhC---CCCCCCCCCCChHHHHHHHHcCeecEEEece
Q 036525 310 LKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPEL---PYAPDGSSSGSYNDLIYQVFLGEFDAVVGDI 386 (783)
Q Consensus 310 ~~L~V~v~~~~p~~~f~~~~~~~~~~~~~~~~G~~idl~~~ia~~l---~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~ 386 (783)
++|+||+.. .++||...+. .+ +++.|+++|+++.+++++ |++..... .+|..++.+|.+|++|++++++
T Consensus 38 ~~l~vg~~~--~~~p~~~~~~----~~-g~~~G~~~~l~~~~~~~~~~pg~~v~~~~-~~~~~~~~~l~~g~~D~~~~~~ 109 (259)
T 2v25_A 38 GQLIVGVKN--DVPHYALLDQ----AT-GEIKGFEVDVAKLLAKSILGDDKKIKLVA-VNAKTRGPLLDNGSVDAVIATF 109 (259)
T ss_dssp TCEEEEECS--EETTTEEEET----TT-TEEESHHHHHHHHHHHHHHSCTTSEEEEE-CCTTTHHHHHHTTSCSEECSSC
T ss_pred CeEEEEECC--CCCCeEEEEC----CC-CeEEEeeHHHHHHHHHHhcCCCcceEEEE-cCHHHHHHHHhCCCCCEEEecC
Confidence 689999853 2334454331 12 789999999999999999 87722111 3688999999999999999888
Q ss_pred eeecccceeeecccccccccccccceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHh
Q 036525 387 TIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTM 466 (783)
Q Consensus 387 ~~t~~R~~~vdFs~p~~~s~~~~~~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (783)
..+++|.+.++|+.||+... ..++.+...+ +.
T Consensus 110 ~~~~~~~~~~~~~~p~~~~~-----------------------------~~~~~~~~~~-i~------------------ 141 (259)
T 2v25_A 110 TITPERKRIYNFSEPYYQDA-----------------------------IGLLVLKEKK-YK------------------ 141 (259)
T ss_dssp BCCHHHHTTEEECSCSEEEE-----------------------------EEEEEEGGGC-CC------------------
T ss_pred ccCHHHHhcCcccccceeCc-----------------------------eEEEEeCCCC-CC------------------
Confidence 89999999999999998763 0112222111 00
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccCCcccCCchHHH----HHHhcCCCcccceecCChhH
Q 036525 467 VFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLG----ILKQLGFDERKLVVYNSPED 542 (783)
Q Consensus 467 ~~~~~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~----~l~~~~~~~~~~~~~~~~~~ 542 (783)
.+....++-+ .+..|+.... .+...+++ .++..+.+..+
T Consensus 142 ------~~~dL~g~~i------------------------------~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 184 (259)
T 2v25_A 142 ------SLADMKGANI------------------------------GVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPS 184 (259)
T ss_dssp ------SGGGCTTCEE------------------------------EEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHH
T ss_pred ------CHHHhCCCEE------------------------------EEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHH
Confidence 0000000000 1111333333 33334442 25667889999
Q ss_pred HHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccceEEEecCCC-CChHHHHHHHHhhhcCChHHHHHH
Q 036525 543 CHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHS-PLVHDVSKAILNVTEGDKMKEIED 621 (783)
Q Consensus 543 ~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~s-pl~~~in~~il~l~e~G~~~~~~~ 621 (783)
..++|..|+ +|+++.+...+.+++++... +++..+...+++++++|++ .+++.+|++|.++.++ ++++.+
T Consensus 185 ~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~ 255 (259)
T 2v25_A 185 IKAALDAKR----VDAFSVDKSILLGYVDDKSE---ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAK 255 (259)
T ss_dssp HHHHHHTTS----SSEEEEEHHHHTTTCCTTEE---ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHH
T ss_pred HHHHHHcCC----CcEEEecHHHHHHHHHhCCC---ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 999999999 99999998888777666543 5566666778899999998 5999999999999999 999999
Q ss_pred Hhc
Q 036525 622 AWF 624 (783)
Q Consensus 622 kw~ 624 (783)
||.
T Consensus 256 k~~ 258 (259)
T 2v25_A 256 KWG 258 (259)
T ss_dssp HTT
T ss_pred HhC
Confidence 995
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.08 E-value=5.1e-06 Score=81.80 Aligned_cols=180 Identities=7% Similarity=0.002 Sum_probs=119.4
Q ss_pred ccEEEeeHHHHHHHhhhCCCCCCCCCCC-ChHHHHHHHHcCeecEEEeceeeecc------cceeeeccccccccccccc
Q 036525 338 TSVTGYCIDVFKAVIPELPYAPDGSSSG-SYNDLIYQVFLGEFDAVVGDITIVFN------RSNYVGFTLPYTESGKRNA 410 (783)
Q Consensus 338 ~~~~G~~idl~~~ia~~l~f~~~~~~~~-~~~gli~~l~~g~~Di~~~~~~~t~~------R~~~vdFs~p~~~s~~~~~ 410 (783)
.++.|+.=-|.+.+. .+++. .... .+++.++.|++|++|+++++++.+++ |...+||+.||+.+.-
T Consensus 28 ~~yeGlatgl~~~f~-gi~~~---i~~mrg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h--- 100 (231)
T 2ozz_A 28 RLYEGLASGLKAQFD-GIPFY---YAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEH--- 100 (231)
T ss_dssp HHHHHHHHHHHHTTT-TSCEE---EEECSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCE---
T ss_pred hhhhHHHHHHHHHhc-CCcEE---EEEccChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCe---
Confidence 667788777777664 33322 1225 79999999999999999999999999 9999999999996520
Q ss_pred ceeeccCChhHHHHHHHHHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcccccccccchhhhHHHHHHHH
Q 036525 411 WVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVV 490 (783)
Q Consensus 411 ~~~l~PF~~~vWl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~l~~ 490 (783)
-++-+.... ..
T Consensus 101 --------------------------~li~~~~~~--------------------------~~----------------- 111 (231)
T 2ozz_A 101 --------------------------QLICRKGES--------------------------GN----------------- 111 (231)
T ss_dssp --------------------------EEEEETTCG--------------------------GG-----------------
T ss_pred --------------------------EEEEeCCCc--------------------------cc-----------------
Confidence 011111100 00
Q ss_pred HHHHHHhhhhhhheeeccccCCcccCCchHHHHHHhcCCCcccceec-CChhHHHHHHhcCcccCceeEEec--chhHHH
Q 036525 491 LILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVY-NSPEDCHELFQKGSANGGIAAALD--EIPYMK 567 (783)
Q Consensus 491 lil~s~Yta~L~s~Lt~~~~~~~i~sgs~~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~g~~a~~~--~~~~~~ 567 (783)
+ .+-.++.||..+..+.+..+...++..+ .+..+++++|.+|+ +||++. |.+...
T Consensus 112 -------------i-----krVGvd~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~----IDA~Iwn~d~~~a~ 169 (231)
T 2ozz_A 112 -------------V-----KRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGD----VDAVIWNVVAENEL 169 (231)
T ss_dssp -------------C-----CEEEECTTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTS----CCEEEEEC-CHHHH
T ss_pred -------------c-----EEEEecCCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCC----ccEEEEcCcchhhh
Confidence 0 1226777898888887743444466677 89999999999999 999999 766544
Q ss_pred HHHhhcCCceEE--ecc---cccccceEEEecCCC-CChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 568 LLIGQHCSKYTM--IEP---KFKTAGFGFVFPLHS-PLVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 568 ~~~~~~c~~l~~--v~~---~~~~~~~~~~~~k~s-pl~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
...+ +.. +.. ........++++||+ .+++.+|+.| +...+..+.++-.
T Consensus 170 ----~~~~-l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I----~~~~v~~~Q~~V~ 223 (231)
T 2ozz_A 170 ----TMLG-LEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV----DKHALLAHQQRVV 223 (231)
T ss_dssp ----HHTT-EEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred ----cCCC-cceeccccccccccCCceEEEEECCCHHHHHHHHHHh----HHHHHHHHHHHHH
Confidence 1222 222 222 233455568999996 6888888654 3334445555555
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.82 E-value=5.4e-05 Score=79.65 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=68.5
Q ss_pred eecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhc---CCceEEecccccccceEEEecCCC--CChHHHHHHHHh
Q 036525 535 VVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQH---CSKYTMIEPKFKTAGFGFVFPLHS--PLVHDVSKAILN 609 (783)
Q Consensus 535 ~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~---c~~l~~v~~~~~~~~~~~~~~k~s--pl~~~in~~il~ 609 (783)
+.+.+..+.+.+|..|+ +||.+.+...+..+.++. ..+++++........++++++|+- .+++.||.+|.+
T Consensus 161 v~~~~~~~a~~al~~G~----vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~ 236 (321)
T 3p7i_A 161 TVNAGHETNALAVANKQ----VDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMN 236 (321)
T ss_dssp EEECCHHHHHHHHHTTS----SSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHCCC----ceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHh
Confidence 34567788999999999 999999988887777653 234777765544556789999994 399999999999
Q ss_pred hhcCChHHHHHHHhc
Q 036525 610 VTEGDKMKEIEDAWF 624 (783)
Q Consensus 610 l~e~G~~~~~~~kw~ 624 (783)
+.++|...++.+++-
T Consensus 237 ~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 237 YGKTPEEKAVLERLG 251 (321)
T ss_dssp TTCSHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHhcC
Confidence 999999888877763
No 76
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.76 E-value=4.9e-05 Score=79.68 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=67.4
Q ss_pred cCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhc---CCceEEecccccccceEEEecCCC--CChHHHHHHHHhhh
Q 036525 537 YNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQH---CSKYTMIEPKFKTAGFGFVFPLHS--PLVHDVSKAILNVT 611 (783)
Q Consensus 537 ~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~---c~~l~~v~~~~~~~~~~~~~~k~s--pl~~~in~~il~l~ 611 (783)
..+..+.+.+|..|+ +|+.+.+...+..++++. ..+++++........++++++|+. .+++.+|.+|.++.
T Consensus 154 ~g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~ 229 (310)
T 3n5l_A 154 NSSHEVNALAVANKQ----VDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYG 229 (310)
T ss_dssp ECCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHcCC----ccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcC
Confidence 467778999999999 999999988888877764 134777755444445689999994 39999999999999
Q ss_pred cCChHHHHHHHhc
Q 036525 612 EGDKMKEIEDAWF 624 (783)
Q Consensus 612 e~G~~~~~~~kw~ 624 (783)
++|.+.++.++|-
T Consensus 230 ~d~~~~~~l~~~g 242 (310)
T 3n5l_A 230 ANAEQKKVLADLQ 242 (310)
T ss_dssp CSHHHHHHHHHTT
T ss_pred CChhHHHHHHhcC
Confidence 9999988888764
No 77
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.58 E-value=0.00034 Score=71.53 Aligned_cols=153 Identities=9% Similarity=0.024 Sum_probs=97.1
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
.+.+|.+||....+... .....+.+.++|+|......+ + +..+..++...+..++++|...|.++++++..
T Consensus 52 ~~~~vdgiI~~~~~~~~-~~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 122 (276)
T 2h0a_A 52 LAYLTDGLILASYDLTE-RFEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVE 122 (276)
T ss_dssp --CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEEC
T ss_pred HhCCCCEEEEecCCCCH-HHHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEec
Confidence 34578888753332222 344556678999999864321 1 45567778888888999998889999999986
Q ss_pred eC-C-----cCC-cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHH
Q 036525 85 DN-Q-----YGE-AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANE 155 (783)
Q Consensus 85 d~-~-----~G~-~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~ 155 (783)
+. . ..+ ...++|.+++++.|+++.....+..+.+..+-...+.++.+. .+++|+ +.+...+..+++++++
T Consensus 123 ~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~ 201 (276)
T 2h0a_A 123 EEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVR 201 (276)
T ss_dssp CSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHT
T ss_pred CcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHH
Confidence 54 3 445 678899999999997653211111112233344455665544 477776 5666778889999999
Q ss_pred cCccccceEEEE
Q 036525 156 IGLMNKGCVWIM 167 (783)
Q Consensus 156 ~g~~~~~~~~i~ 167 (783)
.|+..++-+.+.
T Consensus 202 ~g~~vP~di~vv 213 (276)
T 2h0a_A 202 LGLTPGRDVRVL 213 (276)
T ss_dssp TSCTTTTSEEEE
T ss_pred cCCCCCCCeEEE
Confidence 998755544444
No 78
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=97.27 E-value=0.00035 Score=72.04 Aligned_cols=189 Identities=9% Similarity=-0.031 Sum_probs=113.7
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||....+.....+..+ .++|+|......+. +.+..+..++...+..++++|...|.++++++...
T Consensus 61 ~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~ 131 (288)
T 2qu7_A 61 SQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLAN 131 (288)
T ss_dssp HTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECC
T ss_pred HcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecC
Confidence 4589998865443222222222 78999988653321 23445677788888889999988899999999854
Q ss_pred C--CcCCcchHHHHHHHhhCCceEeEEEec--CCCC----ChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcC
Q 036525 86 N--QYGEAMIPSLTDALHAIDTRVPYRSVI--SPLA----TDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 86 ~--~~G~~~~~~~~~~l~~~g~~v~~~~~i--~~~~----~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
. .......+.|.+++++.|+++.....+ ..+. +..+-...+.++.+.++++|+.. +...+..+++++++.|
T Consensus 132 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~d~~a~g~~~al~~~g 210 (288)
T 2qu7_A 132 PNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVAT-NHLLLLGALQAIKESE 210 (288)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEEC-SHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEEC-CcHHHHHHHHHHHHhC
Confidence 3 345667889999999999876422112 1111 12222334444443488987754 4556778899999999
Q ss_pred ccccceE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 158 LMNKGCV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 158 ~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
+..++-+ .++-|..... ....+.+.... ......++.|+.++...++
T Consensus 211 ~~vP~di~vvg~d~~~~~---------~~~~p~lttv~-----------~~~~~~g~~a~~~l~~~i~ 258 (288)
T 2qu7_A 211 KEIKKDVIIVGFDDSYWN---------EIYTPKLTVIS-----------QPVKEMGQVAAKMIYKLIK 258 (288)
T ss_dssp CCBTTTBEEEEESCCTHH---------HHSSSCCCEEE-----------CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEeCChHHH---------hhcCCCccEEe-----------cCHHHHHHHHHHHHHHHHc
Confidence 8655433 4444432210 11112221111 1245678888888887775
No 79
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.22 E-value=0.0018 Score=67.61 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=119.0
Q ss_pred CCeEEEEc-cCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHc--CCeEEEEEE
Q 036525 7 AQVRVMLG-PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAF--GWREAVPIY 83 (783)
Q Consensus 7 ~~V~aiIG-p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--gw~~vaii~ 83 (783)
.+|.+||. |..+.........+.+.++|+|......+. .+.+..+..++...+..++++|... |.+++++|.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~ 130 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGT 130 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 57888874 544443334455566789999998654321 1234456677778888899998776 999999998
Q ss_pred Ee--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 84 VD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 84 ~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.. ....+...+.|++++++.|+++..... .+.+..+....+.++.+. ++++|+.. +...+..+++++++.|+
T Consensus 131 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~- 206 (313)
T 2h3h_A 131 GSLTAMNSLQRIQGFKDAIKDSEIEIVDILN--DEEDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGK- 206 (313)
T ss_dssp SCSSCHHHHHHHHHHHHHHTTSSCEEEEEEE--CSSCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTC-
T ss_pred CCCCCccHHHHHHHHHHHhcCCCCEEEEeec--CCCCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCC-
Confidence 54 344566788999999999998764332 122333444556666544 45777764 44567788999999995
Q ss_pred ccceEEEEeCCcccccccCChhhhhcccc-eeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 160 NKGCVWIMTDGMTNLLRTLEPSVIDSMQG-VIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
..+...++.|........+ ..| .+.... ......++.|+.++.+.++
T Consensus 207 p~dv~vvg~d~~~~~~~~~-------~~g~~lttv~-----------~~~~~~g~~av~~l~~~i~ 254 (313)
T 2h3h_A 207 VGKVKIVCFDTTPDILQYV-------KEGVIQATMG-----------QRPYMMGYLSVTVLYLMNK 254 (313)
T ss_dssp TTTSEEEEECCCHHHHHHH-------HHTSCSEEEE-----------CCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCHHHHHHH-------HcCCeEEEEe-----------cCHHHHHHHHHHHHHHHHh
Confidence 3344455555432111101 112 111111 1235678888888888876
No 80
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=97.16 E-value=0.0015 Score=67.16 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=113.9
Q ss_pred cCCeEEEEccCCchhHHHHHcccCC-CCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNK-SQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~-~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+.+|.+||....... ....+...+ .++|+|......+. .++...+..++...+..++++|...|.++++++..
T Consensus 61 ~~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~ 134 (289)
T 1dbq_A 61 QKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEAK-----ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPG 134 (289)
T ss_dssp HTTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECSSCC-----SSSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hCCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccCCCc-----cCcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 457888875322211 122333333 79999998653221 12334566777788888999998889999999985
Q ss_pred e--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 85 D--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 85 d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+ ....+...++|.+++++.|+++.....+..+.+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..
T Consensus 135 ~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~v 213 (289)
T 1dbq_A 135 PLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRV 213 (289)
T ss_dssp C------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCT
T ss_pred CCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCC
Confidence 4 3456778899999999999775322122212223334445556554 36787765 45567778899999999865
Q ss_pred cc-eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 161 KG-CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 161 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
++ ...++.|.... ..... .+.-.+.. .....++.|+.++...++.
T Consensus 214 P~di~vvg~d~~~~-~~~~~-------p~lttv~~------------~~~~~g~~a~~~l~~~i~~ 259 (289)
T 1dbq_A 214 PQDVSLIGYDNVRN-ARYFT-------PALTTIHQ------------PKDSLGETAFNMLLDRIVN 259 (289)
T ss_dssp TTTCEEEEEECCTT-GGGSS-------SCCEEEEC------------CSHHHHHHHHHHHHHHHHS
T ss_pred CCceEEEeeCCchH-hccCC-------CccccccC------------CHHHHHHHHHHHHHHHHcC
Confidence 44 33344333221 11111 11111211 2356788888888887763
No 81
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=97.14 E-value=0.00068 Score=70.01 Aligned_cols=192 Identities=9% Similarity=-0.011 Sum_probs=115.8
Q ss_pred cCCeEEEEccCCchhHHHHHcccCC-CCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNK-SQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~-~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+.+|.+||....+.... ....+.+ .++|+|......+. +.+..+..++...+..++++|...|.+++++|..
T Consensus 75 ~~~vdgii~~~~~~~~~-~~~~l~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~ 147 (296)
T 3brq_A 75 DLRCDAIMIYPRFLSVD-EIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTG 147 (296)
T ss_dssp HTTCSEEEEECSSSCHH-HHHHHHHTCSSCEEEESCCCSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hcCCCEEEEecCCCChH-HHHHHHhcCCCCEEEEccccCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcC
Confidence 35788888643322222 2333455 79999998643221 2334566667777788889998889999999986
Q ss_pred eC--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 85 DN--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 85 d~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+. ..++...+.|.+++++.|+++.....+..+.+..+-...+.++.+ .++++|++. +...+..+++++++.|+..
T Consensus 148 ~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~v 226 (296)
T 3brq_A 148 SMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS-NDDMAIGAMKALHERGVAV 226 (296)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEES-SHHHHHHHHHHHHHHTCCT
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHHHHHHHHcCCCC
Confidence 53 345667889999999999876432222222233333445566544 367887654 5566778899999999865
Q ss_pred cc-eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 161 KG-CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 161 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
++ ...++-|..... .... .+.-.+. ......++.|+.++...++.
T Consensus 227 P~di~vvg~d~~~~~-~~~~-------p~lttv~------------~~~~~~g~~a~~~l~~~i~~ 272 (296)
T 3brq_A 227 PEQVSVIGFDDIAIA-PYTV-------PALSSVK------------IPVTEMIQEIIGRLIFMLDG 272 (296)
T ss_dssp TTTCEEEEESCCTTG-GGSS-------SCCEEEE------------CCHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEeecCchhh-hccC-------CCceeee------------CCHHHHHHHHHHHHHHHHhC
Confidence 44 334444432211 1111 1111111 12456788888888877764
No 82
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=97.03 E-value=0.0029 Score=66.57 Aligned_cols=157 Identities=11% Similarity=-0.024 Sum_probs=101.6
Q ss_pred eEEEEccCCch-hHHHHHcccCCCCccEEeeccCCCCCCCCC-C-CeEEEeecCchhhHHHHHHHHHH--cCCeEEEEEE
Q 036525 9 VRVMLGPEDSM-PTNFIIQPGNKSQVPILSFSATSPSLTSIR-S-PYFFRGALNDSSQVGAITAIIKA--FGWREAVPIY 83 (783)
Q Consensus 9 V~aiIGp~~S~-~~~av~~~~~~~~vP~Is~~a~s~~ls~~~-~-~~~fr~~p~~~~~~~ai~~~l~~--~gw~~vaii~ 83 (783)
|.+||....+. ........+.+.++|+|......+..+... . +.+..+..++...+..++++|.. .|.+++++|.
T Consensus 64 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~ 143 (332)
T 2rjo_A 64 NLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALG 143 (332)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 99887643333 222444555667999999865433211111 1 45667888888888989999877 6999999998
Q ss_pred Ee--CCcCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhcc---CceEEEEEcChhhHHHHHHHHHHcC
Q 036525 84 VD--NQYGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 84 ~d--~~~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~---~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
.. ........++|.+++++. |+++..... .+.+..+-...+.++.+. ++++|+. .+...+..+++++++.|
T Consensus 144 g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G 220 (332)
T 2rjo_A 144 GIFSNVPAIERKAGLDAALKKFPGIQLLDFQV--ADWNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEG 220 (332)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEEeecc--CCCCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcC
Confidence 54 334567788999999999 988754322 122333444555555444 5677664 45566788999999999
Q ss_pred ccccceEEEEeC
Q 036525 158 LMNKGCVWIMTD 169 (783)
Q Consensus 158 ~~~~~~~~i~~~ 169 (783)
+. .+...++.|
T Consensus 221 ~~-~di~vvg~D 231 (332)
T 2rjo_A 221 LA-GQIPVTGMD 231 (332)
T ss_dssp CB-TTBCEECSB
T ss_pred CC-CCCEEEeec
Confidence 86 333344433
No 83
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.01 E-value=0.0019 Score=66.53 Aligned_cols=157 Identities=12% Similarity=0.088 Sum_probs=98.7
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-....... .....+.+.++|+|......+ . +.+..+..++...+..++++|...|.+++++|...
T Consensus 62 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 134 (287)
T 3bbl_A 62 SGNVDGFVLSSINYND-PRVQFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWP 134 (287)
T ss_dssp TTCCSEEEECSCCTTC-HHHHHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred cCCCCEEEEeecCCCc-HHHHHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4578888753322222 233344567999999864322 1 12334566777788888899888899999999854
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc-c---CceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT-M---QTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~---~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.. ......+.|.+++++.|+++.....+..+.+..+-...+.++.+ . ++++|+. .+...+..+++++++.|+.
T Consensus 135 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 135 EDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLT 213 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCC
Confidence 32 34567888999999999765321111112233333445566654 3 5787765 4556678889999999986
Q ss_pred ccc-eEEEEeCC
Q 036525 160 NKG-CVWIMTDG 170 (783)
Q Consensus 160 ~~~-~~~i~~~~ 170 (783)
.++ ...++-|.
T Consensus 214 vP~di~vig~d~ 225 (287)
T 3bbl_A 214 IGTDLAIIGFDD 225 (287)
T ss_dssp BTTTBEEEEESC
T ss_pred CCCCEEEEEECC
Confidence 554 33444443
No 84
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=97.01 E-value=0.0016 Score=67.32 Aligned_cols=195 Identities=10% Similarity=-0.009 Sum_probs=123.7
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcC--CeEEEEEE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFG--WREAVPIY 83 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~g--w~~vaii~ 83 (783)
.+|.+|| .|..+.........+.+.+||+|......+... ..+.+..+..++...+..++++|...| -++++++.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~ 137 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLN 137 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4788776 566665556666677788999999875443211 123455677788888999999998888 89999997
Q ss_pred EeC--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 84 VDN--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 84 ~d~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.+. ...+...++|++++++.|+++.... ...........+.++.+. ++++|+. .+...+..+++.+++.|+.
T Consensus 138 g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 138 PQPGHIGLEKRAYGIKTILQDKGIFFEELD---VGTDPNQVQSRVKSYFKIHPETNIIFC-LTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CCSCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHSHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCeEEEee---cCCChHHHHHHHHHHHHhCCCCCEEEE-cCCcchHHHHHHHHhcCCc
Confidence 543 3445678999999999999987544 122333444555564443 4566554 5566778889999999985
Q ss_pred ccc--eEEEEeCCcccccccCChhhhhcccce-eEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 160 NKG--CVWIMTDGMTNLLRTLEPSVIDSMQGV-IDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 160 ~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
.++ ...++.|....... ....|. +.... ......+|.|+.++.+.++.
T Consensus 214 vP~~dv~vig~D~~~~~~~-------~i~~~~~lttv~-----------~~~~~~g~~av~~l~~~i~g 264 (297)
T 3rot_A 214 DFNYQPQVYSFDKTPNTVS-------LIHKKLVNYVMD-----------QQPFLMGYLSITQLVLMNRY 264 (297)
T ss_dssp TCCCCCEEEEECCCHHHHH-------HHHTTSCCEEEC-----------CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEeCCCHHHHH-------HHHcCCceEEEe-----------cChHHHHHHHHHHHHHHHhC
Confidence 443 33444443221100 111222 11111 12456788899988888875
No 85
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.98 E-value=0.0011 Score=68.23 Aligned_cols=155 Identities=14% Similarity=0.001 Sum_probs=95.3
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||........ .....+.+.++|+|......+. + +..+..++...+..++++|...|.++++++..+
T Consensus 63 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 134 (290)
T 3clk_A 63 ERPVMGILLLSIALTD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGID 134 (290)
T ss_dssp SSCCSEEEEESCC-----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCC
T ss_pred hcCCCEEEEecccCCH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4578888753332222 2233445689999997643221 2 345667777888889999988899999999854
Q ss_pred --CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh-ccCceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 86 --NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 86 --~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~-~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
........+.|.+++++.|+++.....+..+.+..+-...+.++. ..++++|+. .+...+..+++++++.|+..++
T Consensus 135 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 135 QYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp CCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 345567788999999999987532111221222333334555554 356787765 4555677889999999986554
Q ss_pred e-EEEEeC
Q 036525 163 C-VWIMTD 169 (783)
Q Consensus 163 ~-~~i~~~ 169 (783)
- ..++-|
T Consensus 214 di~vvg~d 221 (290)
T 3clk_A 214 DLSIVSID 221 (290)
T ss_dssp TCEEEEEE
T ss_pred ceEEEEeC
Confidence 3 334433
No 86
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=96.98 E-value=0.0056 Score=62.77 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=96.1
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-.........+ ..+. .++|+|......+. +.+..+..++...+..++++|...|.+++++|...
T Consensus 62 ~~~vdgiI~~~~~~~~~~~-~~l~-~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 133 (285)
T 3c3k_A 62 GKMVDGVITMDALSELPEL-QNII-GAFPWVQCAEYDPL------STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHD 133 (285)
T ss_dssp TTCCSEEEECCCGGGHHHH-HHHH-TTSSEEEESSCCTT------SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCCCCEEEEeCCCCChHHH-HHHh-cCCCEEEEccccCC------CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4589888864333222223 3334 89999998653221 22334566777778888999988899999999865
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHH--Hhcc--CceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYK--LFTM--QTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~--l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.. ..+...+.|.+++++.|+++. ...-..+ ..+-...+.+ +.+. ++++|+. .+...+..+++++++.|+.
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~ 209 (285)
T 3c3k_A 134 LAYQYAQHRESGYLNRLKFHGLDYS-RISYAEN--LDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCCCC-EEEECSS--SSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCC
T ss_pred CccccHHHHHHHHHHHHHHcCCCce-EeecCCC--hHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCC
Confidence 32 345667889999999998764 1111222 2233345555 5444 5787765 4556677888999999986
Q ss_pred ccceEEEE
Q 036525 160 NKGCVWIM 167 (783)
Q Consensus 160 ~~~~~~i~ 167 (783)
.++-+-|+
T Consensus 210 vP~di~vv 217 (285)
T 3c3k_A 210 IPQDVAVV 217 (285)
T ss_dssp TTTTCEEE
T ss_pred CCCceEEE
Confidence 55444343
No 87
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=96.97 E-value=0.0018 Score=68.27 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=98.8
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-....... .....+...++|+|......+. +.+..+..++...+..++++|...|.+++++|...
T Consensus 114 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 186 (332)
T 2hsg_A 114 GKQVDGIIFMSGNVTE-EHVEELKKSPVPVVLAASIEST------NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGT 186 (332)
T ss_dssp CCSSCCEEECCSSCCH-HHHHHHTTSSSCEEEESCCCSC------TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESC
T ss_pred hCCCcEEEEecCCCCH-HHHHHHHhCCCCEEEEccccCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4578887753322222 3334456789999987643221 12334566777778888899988899999999865
Q ss_pred C---CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 86 N---QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 86 ~---~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
. ...+...++|.+++++.|+++.....+..+.+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..
T Consensus 187 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~v 265 (332)
T 2hsg_A 187 LEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNV 265 (332)
T ss_dssp TTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCH
T ss_pred cccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCC
Confidence 3 3456778999999999998653211111122223333455555444 5788774 56667788999999999865
Q ss_pred cce-EEEEeC
Q 036525 161 KGC-VWIMTD 169 (783)
Q Consensus 161 ~~~-~~i~~~ 169 (783)
++- ..++-|
T Consensus 266 P~disvvg~D 275 (332)
T 2hsg_A 266 PNDLEIIGFD 275 (332)
T ss_dssp HHHCEEEEES
T ss_pred CCCeEEEEEC
Confidence 443 344444
No 88
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.96 E-value=0.0016 Score=67.05 Aligned_cols=195 Identities=13% Similarity=0.134 Sum_probs=119.7
Q ss_pred cccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEE
Q 036525 4 LNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIY 83 (783)
Q Consensus 4 i~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~ 83 (783)
+.+.+|.+||-....... .....+.+.++|+|......+.. +.+..+..++...+..++++|...|.++++++.
T Consensus 65 ~~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 138 (292)
T 3k4h_A 65 VQGRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIG 138 (292)
T ss_dssp HHTTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHcCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEe
Confidence 334588887743222222 34555667899999876543221 113446677778888899999889999999998
Q ss_pred EeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 84 VDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 84 ~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.... ..+...++|.+++++.|+.+.....+..+.+..+-...+.++.+. ++++|+ +.+...+..+++.+++.|+.
T Consensus 139 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 139 GGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp SCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred CcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCC
Confidence 5433 345668899999999998753222222222333444556666554 567766 45666788899999999987
Q ss_pred ccceE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 160 NKGCV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 160 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
.++-+ .++-|... ...... .+.-.+. ......++.|+.++...++.
T Consensus 218 vP~di~vig~d~~~-~~~~~~-------p~lttv~------------~~~~~~g~~av~~l~~~i~~ 264 (292)
T 3k4h_A 218 VPKDVSIVSFNNAL-LSEIAS-------PPLSTVD------------VNIYQLGYEAAKALVDKVEN 264 (292)
T ss_dssp TTTTCEEEEESCCH-HHHHSS-------SCCEEEE------------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecCcc-hhhccC-------CCceEEe------------cCHHHHHHHHHHHHHHHhhC
Confidence 55433 44444321 110011 1111111 12456788999998888875
No 89
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=96.94 E-value=0.0038 Score=64.55 Aligned_cols=156 Identities=8% Similarity=-0.034 Sum_probs=97.9
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH-cCCe-EEEEEE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA-FGWR-EAVPIY 83 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~gw~-~vaii~ 83 (783)
.+|.+|| .|..+.........+...++|+|...... .. .+.+..+..++...+..++++|.. .|.+ +++++.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~ 134 (303)
T 3d02_A 60 RKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYV 134 (303)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEe
Confidence 5788865 55554444445566677899999986531 11 234455677777788889999876 8987 999887
Q ss_pred Ee--CCcCCcchHHHHHHHhhCC--ceEeEEEecCCCCChhHHHHHHHHHhccC--ceEEEEEcChhhHHHHHHHHHHcC
Q 036525 84 VD--NQYGEAMIPSLTDALHAID--TRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 84 ~d--~~~G~~~~~~~~~~l~~~g--~~v~~~~~i~~~~~~~d~~~~l~~l~~~~--~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
.. ....+...+.|++++++.+ +++... .+....+..+....+.++.+.. +++|+.. ....+..+++++++.|
T Consensus 135 g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g 212 (303)
T 3d02_A 135 GSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVSF-GSNGPIGAGRAVKEKR 212 (303)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEES-STTHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEEe-CCcchhHHHHHHHhcC
Confidence 43 3334567788999998765 444321 1121223334455666665544 5665554 4456778899999999
Q ss_pred ccccceEEEEeCC
Q 036525 158 LMNKGCVWIMTDG 170 (783)
Q Consensus 158 ~~~~~~~~i~~~~ 170 (783)
+. .+...++.+.
T Consensus 213 ~~-~dv~vig~d~ 224 (303)
T 3d02_A 213 AK-NKVAVYGMMI 224 (303)
T ss_dssp CT-TTCEEEECCC
T ss_pred CC-CCeEEEEeCC
Confidence 86 3444455443
No 90
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.94 E-value=0.0022 Score=66.37 Aligned_cols=192 Identities=11% Similarity=-0.001 Sum_probs=117.6
Q ss_pred cCCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCC--eEEEEE
Q 036525 6 NAQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGW--REAVPI 82 (783)
Q Consensus 6 ~~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw--~~vaii 82 (783)
..+|.+|| -|..+.........+.+.++|+|......+.. +.+-.+..++...+..++++|...|. ++++++
T Consensus 67 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i 141 (304)
T 3gbv_A 67 EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIF 141 (304)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEE
T ss_pred hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 45788876 44444444555556677799999987533221 12445667778888889999988887 999999
Q ss_pred EEe------CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHH
Q 036525 83 YVD------NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 83 ~~d------~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
..+ ........++|.+++++.|..+..........+...-...+.++.+ .++++|+..... +..+++.++
T Consensus 142 ~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~ 219 (304)
T 3gbv_A 142 RKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQ 219 (304)
T ss_dssp EEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHH
T ss_pred EecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHH
Confidence 843 2344667889999999988654332221111111122334444433 367888776655 677999999
Q ss_pred HcCccccceEEEEeCCcccccccCChhhhhccccee--EeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 155 EIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVI--DVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 155 ~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+.|+ .+...++-|....... ....|.. .+.. .....++.|+.++.+.++.
T Consensus 220 ~~g~--~di~vig~d~~~~~~~-------~~~~~~~~~tv~~------------~~~~~g~~av~~l~~~i~~ 271 (304)
T 3gbv_A 220 QRRK--SDFSLIGYDLLERNVT-------CLKEGTVSFLIAQ------------QPELQGFNSIKTLCDHLIF 271 (304)
T ss_dssp HTTC--CSCEEEEESCCHHHHH-------HHHHTSEEEEEEC------------CHHHHHHHHHHHHHHHHTS
T ss_pred HcCC--CCcEEEEeCCCHHHHH-------HHHcCceEEEEEe------------CHHHHHHHHHHHHHHHHhc
Confidence 9998 4455555554322111 1112333 2221 2456788888888888763
No 91
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=96.93 E-value=0.001 Score=68.59 Aligned_cols=192 Identities=8% Similarity=-0.047 Sum_probs=114.2
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-...... ......+.+.++|+|......+. +.+..+..++...+..++++|...|.+++++|..+
T Consensus 65 ~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 137 (290)
T 2rgy_A 65 GRDCDGVVVISHDLH-DEDLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGP 137 (290)
T ss_dssp HTTCSEEEECCSSSC-HHHHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred hcCccEEEEecCCCC-HHHHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 457888875332222 22333345579999998643221 12334667777778888999988899999999865
Q ss_pred C--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 86 N--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 86 ~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
. ...+...++|.+++++.|+++.....+..+.+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..+
T Consensus 138 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP 216 (290)
T 2rgy_A 138 FTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFC-ANDTMAVSALARFQQLGISVP 216 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 3 234566788999999999765322111112222233344445443 36788774 566678889999999998655
Q ss_pred ce-EEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 162 GC-VWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 162 ~~-~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+- ..++-|.... .. .....+.... ......++-|+.++...++.
T Consensus 217 ~di~vvg~D~~~~-~~--------~~~p~lttv~-----------~~~~~~g~~a~~~l~~~i~~ 261 (290)
T 2rgy_A 217 GDVSVIGYDDDYS-AA--------YAAPALTSVH-----------IPTAELTQNAVRWLINQCYG 261 (290)
T ss_dssp TTCEEEEEECCTT-ST--------TSSSCCEEEE-----------CCHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCchH-hc--------ccCCCceEEe-----------CCHHHHHHHHHHHHHHHHhC
Confidence 43 3444333221 01 1111122111 12456788888888888765
No 92
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.93 E-value=0.004 Score=63.92 Aligned_cols=155 Identities=9% Similarity=0.069 Sum_probs=102.0
Q ss_pred ccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEE
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPI 82 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii 82 (783)
.+.+.+|.+||=.........+... ...++|+|......+ .+..+..++...+..++++|...|.++++++
T Consensus 63 ~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i 133 (289)
T 3g85_A 63 ISKENSFDAAIIANISNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAI 133 (289)
T ss_dssp GSTTTCCSEEEESSCCHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEE
T ss_pred HHhccCCCEEEEecCCcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3445688888754333333333333 468999999875322 2345677788888999999988999999999
Q ss_pred EEeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 83 YVDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 83 ~~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
..+.. ..+...++|.+++++.|+.+.....+..+.+..+-...+.++.+. ++++|+ +.+...+..+++.+++.|+
T Consensus 134 ~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 212 (289)
T 3g85_A 134 LTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQI 212 (289)
T ss_dssp ECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred eCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCC
Confidence 85433 345678899999999998753221122222333444556666544 467766 4566678889999999998
Q ss_pred cccceEEEE
Q 036525 159 MNKGCVWIM 167 (783)
Q Consensus 159 ~~~~~~~i~ 167 (783)
..++-+-|+
T Consensus 213 ~vP~di~vi 221 (289)
T 3g85_A 213 SIPDDIEIV 221 (289)
T ss_dssp CTTTTCEEE
T ss_pred CCCCceEEE
Confidence 765544343
No 93
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.92 E-value=0.004 Score=65.73 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=118.9
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-.........+...+...++|+|......+. +.+..+..++..-+..++++|...|.+++++|...
T Consensus 117 ~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 190 (338)
T 3dbi_A 117 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS 190 (338)
T ss_dssp HTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred hCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 457888875333333455667778889999987643322 11223667777788888999988999999999754
Q ss_pred --CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 86 --NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 86 --~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
........++|.+++++.|+.+.....+..+.+..+-...+.++.+ .++++|+. .+...+..+++.+++.|+..+
T Consensus 191 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP 269 (338)
T 3dbi_A 191 MDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVP 269 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred CCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCC
Confidence 3344567889999999999876432222222233333344555543 45777765 556677789999999999755
Q ss_pred ceE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 162 GCV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 162 ~~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+-+ .++-|... ......+ +.-++. ......++-|+.++...++.
T Consensus 270 ~di~vvg~D~~~-~~~~~~p-------~lttv~------------~~~~~~g~~a~~~l~~~i~~ 314 (338)
T 3dbi_A 270 EQVSVIGFDDIA-IAPYTVP-------ALSSVK------------IPVTEMIQEIIGRLIFMLDG 314 (338)
T ss_dssp TTCEEEEESCCT-TGGGSSS-------CCEEEE------------CCHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECChH-HHhhcCC-------cceEEe------------cCHHHHHHHHHHHHHHHhcC
Confidence 443 44444321 1111111 111111 12456788888888887764
No 94
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=96.92 E-value=0.0031 Score=64.86 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=115.9
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-..... .......+.+.++|+|......+. +.+..+..++...+..++++|...|.++++++...
T Consensus 62 ~~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 134 (291)
T 3egc_A 62 ERRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGS 134 (291)
T ss_dssp HTTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred HCCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45788887433322 344555677889999988654321 22345667788888899999988999999999854
Q ss_pred C--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh--ccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 86 N--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF--TMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 86 ~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~--~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
. .......++|.+++++.|+.+........+.+..+....+.++. ..++++|+ +.+...+..+++.+++.|+..+
T Consensus 135 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 213 (291)
T 3egc_A 135 AGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYG 213 (291)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBT
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 3 34566788999999999876532111111111112223344444 34577766 4666678889999999998755
Q ss_pred ceE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 162 GCV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 162 ~~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+-+ .++-|.... .....+ +.-.+. ......++.|+.++...++.
T Consensus 214 ~di~vvg~d~~~~-~~~~~p-------~lttv~------------~~~~~~g~~av~~l~~~i~~ 258 (291)
T 3egc_A 214 PDVEIVSFDNLPW-MAFLDP-------PLPVVE------------QPTRRIGQEAMRMLIHMIEG 258 (291)
T ss_dssp TTBEEEEESCCGG-GGGSSS-------CCCEEE------------CCHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEecCchh-HhhcCC-------CceEEE------------ECHHHHHHHHHHHHHHHHhC
Confidence 433 444443221 111111 111111 12456788888888888874
No 95
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=96.92 E-value=0.0019 Score=68.10 Aligned_cols=154 Identities=11% Similarity=0.014 Sum_probs=96.4
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-........ ....+...++|+|......+. +.+..+..++..-+..++++|...|.+++++|..+
T Consensus 117 ~~~vdgiI~~~~~~~~~-~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 189 (332)
T 2o20_A 117 SKQVDGIVYMGSSLDEK-IRTSLKNSRTPVVLVGTIDGD------KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGS 189 (332)
T ss_dssp HTTCSEEEECSSCCCHH-HHHHHHHHCCCEEEESCCCTT------SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSC
T ss_pred hCCCCEEEEeCCCCCHH-HHHHHHhCCCCEEEEccccCC------CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 45788887533221122 223334679999988653221 22334566777778888999988899999999855
Q ss_pred C--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccccce
Q 036525 86 N--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGC 163 (783)
Q Consensus 86 ~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~ 163 (783)
. ..++...++|.+++++.|+++.....+..+.+..+-...+.++.+..+++|++ .+...+..+++.+++.|+..++-
T Consensus 190 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~d 268 (332)
T 2o20_A 190 LKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPED 268 (332)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTT
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccC
Confidence 3 23456678999999999987642212221222223333444443338898776 45566778999999999875544
Q ss_pred EEEE
Q 036525 164 VWIM 167 (783)
Q Consensus 164 ~~i~ 167 (783)
+-++
T Consensus 269 isvi 272 (332)
T 2o20_A 269 FEII 272 (332)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 4333
No 96
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=96.89 E-value=0.0053 Score=62.94 Aligned_cols=192 Identities=10% Similarity=-0.006 Sum_probs=116.4
Q ss_pred cCCeEEEEccCC-chhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHc-C-CeEEEEE
Q 036525 6 NAQVRVMLGPED-SMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAF-G-WREAVPI 82 (783)
Q Consensus 6 ~~~V~aiIGp~~-S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~-g-w~~vaii 82 (783)
+.+|.+||.... ..........+.+.++|+|......+. .+.+..+..++...+..++++|... | .++++++
T Consensus 63 ~~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i 137 (289)
T 3brs_A 63 KRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVI 137 (289)
T ss_dssp HTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred HhCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 357888875433 332234455566789999998643221 1235567788888888899998774 7 9999999
Q ss_pred EEeC--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 83 YVDN--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 83 ~~d~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
..+. ...+...+.|.+++++.|..+... +..+.+..+....+.++.+. .+++|+. .+...+..+++++++.|+
T Consensus 138 ~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~ 214 (289)
T 3brs_A 138 SFVKNSKTAMDREEGLKIGLSDDSNKIEAI--YYCDSNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSL 214 (289)
T ss_dssp ESCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCcEEee--ecCCCCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCC
Confidence 8543 345667889999999998765332 22222333444555665544 4666654 455677888999999998
Q ss_pred cccceEEEEeCCcccccccCChhhhhccc-cee-EeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 159 MNKGCVWIMTDGMTNLLRTLEPSVIDSMQ-GVI-DVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
. .+...++.|...... +... +.+ .... ......++.|+.++...++.
T Consensus 215 ~-~di~vvg~d~~~~~~--------~~~~~~~l~ttv~-----------~~~~~~g~~a~~~l~~~i~~ 263 (289)
T 3brs_A 215 E-AKVKLVCIDSSMEQI--------QYLEEGIFEAMVV-----------QKPFNIGYLGVEKALKLLKK 263 (289)
T ss_dssp T-TTSEEEEEESCSCC-------------CCSCCEEEE-----------CCHHHHHHHHHHHHHHHHHT
T ss_pred C-CCEEEEEECCCHHHH--------HHHHCCceEEEEe-----------cChHHHHHHHHHHHHHHhcC
Confidence 6 444444444322111 1111 222 1111 12456788888888877763
No 97
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.85 E-value=0.0038 Score=63.58 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=97.3
Q ss_pred cCCeEEEEc-cCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLG-PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIG-p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+.+|.+||- |.... ......+.+.++|+|......+. +.+..+..++...+..++++|...|.++++++..
T Consensus 57 ~~~vdgii~~~~~~~--~~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 128 (275)
T 3d8u_A 57 ESRPAGVVLFGSEHS--QRTHQLLEASNTPVLEIAELSSK------ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGA 128 (275)
T ss_dssp TSCCCCEEEESSCCC--HHHHHHHHHHTCCEEEESSSCSS------SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred hcCCCEEEEeCCCCC--HHHHHHHHhCCCCEEEEeeccCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 346776653 22221 23334445679999987643221 2344567777778888999998889999999986
Q ss_pred eCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 85 DNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 85 d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+.. ......++|.+++++.|+.+.....+..+.+..+-...+.++.+. .+++|+. .+...+..+++.+++.|+..
T Consensus 129 ~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~v 207 (275)
T 3d8u_A 129 RGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVLKV 207 (275)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCT
T ss_pred CCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCC
Confidence 533 445678899999999998654332222222333444455555443 4777765 45567888899999999865
Q ss_pred cceEEEE
Q 036525 161 KGCVWIM 167 (783)
Q Consensus 161 ~~~~~i~ 167 (783)
++-+.|.
T Consensus 208 P~di~vv 214 (275)
T 3d8u_A 208 PTDIAII 214 (275)
T ss_dssp TTTCEEE
T ss_pred CCceEEE
Confidence 5444333
No 98
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.85 E-value=0.0019 Score=66.14 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=113.4
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
.+.+|.+|| .........+. . .++|+|......+ .....+ .+..++...+..++++|...|.++++++..
T Consensus 57 ~~~~vdgiI-~~~~~~~~~~~---~-~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 126 (280)
T 3gyb_A 57 LSMRPDGII-IAQDIPDFTVP---D-SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRV 126 (280)
T ss_dssp HTTCCSEEE-EESCC------------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred HhCCCCEEE-ecCCCChhhHh---h-cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 345888888 32222222222 2 8999999875432 111222 356677788888999998899999999996
Q ss_pred eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 85 DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 85 d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
.........++|.+++++.|+.+.... +..+.+..+-...+.++.+. .+++|+. .+...+..+++.+++.|+..++
T Consensus 127 ~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 204 (280)
T 3gyb_A 127 GSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPE 204 (280)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTT
T ss_pred CCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 554466778899999999998775433 22223333444455555443 4677654 5566788899999999987554
Q ss_pred e-EEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 163 C-VWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 163 ~-~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
- ..++-|... ......+ +.-.+. ......++.|+.++...++
T Consensus 205 di~vvg~d~~~-~~~~~~p-------~lttv~------------~~~~~~g~~av~~l~~~i~ 247 (280)
T 3gyb_A 205 DLSIIGYDNTP-LAQTRLI-------NLTTID------------DNSIGVGYNAALLLLSMLD 247 (280)
T ss_dssp TCEEEEESCCH-HHHSTTT-------CCCEEE------------CCHHHHHHHHHHHHHHHHC
T ss_pred eeEEEEECCch-HhhccCC-------CceEEe------------cCHHHHHHHHHHHHHHHHh
Confidence 3 344444322 1111111 111111 1245678888888888876
No 99
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=96.84 E-value=0.0044 Score=64.28 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=97.5
Q ss_pred cCCeEEEEccC-CchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH-----------
Q 036525 6 NAQVRVMLGPE-DSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA----------- 73 (783)
Q Consensus 6 ~~~V~aiIGp~-~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~----------- 73 (783)
+.+|.+||-.. ...........+.+.++|+|......+...-..++.+..+..++...+..++++|..
T Consensus 57 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~ 136 (309)
T 2fvy_A 57 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 136 (309)
T ss_dssp HTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTT
T ss_pred HcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhccccccc
Confidence 45788887533 333233445556678999999865322100011345667788888888888999866
Q ss_pred -cCCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc----CceEEEEEcChhhH
Q 036525 74 -FGWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM----QTRVFIVHKLPSLG 146 (783)
Q Consensus 74 -~gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~----~~dvii~~~~~~~~ 146 (783)
.|.+++++|... ....+...+.|.+++++.|+.+.....+..+.+..+-...+.++.+. ++++|+. .+...+
T Consensus 137 g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a 215 (309)
T 2fvy_A 137 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMA 215 (309)
T ss_dssp CSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHH
T ss_pred CCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhH
Confidence 688899999854 33456678899999999998765433322222333334455555543 5777665 455667
Q ss_pred HHHHHHHHHcC
Q 036525 147 SRIFEKANEIG 157 (783)
Q Consensus 147 ~~~~~~a~~~g 157 (783)
..+++++++.|
T Consensus 216 ~g~~~al~~~g 226 (309)
T 2fvy_A 216 MGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 78999999998
No 100
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.82 E-value=0.0059 Score=62.71 Aligned_cols=154 Identities=6% Similarity=-0.023 Sum_probs=100.7
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
.+.+|.+||=....... .....+.+.++|+|......+. +.+-.+..++...+..++++|...|.++++++..
T Consensus 63 ~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 135 (288)
T 3gv0_A 63 ETGSADGVIISKIEPND-PRVRFMTERNMPFVTHGRSDMG------IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVP 135 (288)
T ss_dssp HHTCCSEEEEESCCTTC-HHHHHHHHTTCCEEEESCCCSS------CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HcCCccEEEEecCCCCc-HHHHHHhhCCCCEEEECCcCCC------CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 34577777632122122 3344556789999987643221 1223466777888889999999899999999985
Q ss_pred eCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 85 DNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 85 d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
+.. ..+...++|.+++++.|+.+.....+..+.+..+....+.++.+. .+++|+ +.+...+..+++.+++.|+..
T Consensus 136 ~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~v 214 (288)
T 3gv0_A 136 PSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKI 214 (288)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCT
T ss_pred CcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCC
Confidence 533 356678899999999998775433333333334444566666554 467766 455667788999999999875
Q ss_pred cceEEE
Q 036525 161 KGCVWI 166 (783)
Q Consensus 161 ~~~~~i 166 (783)
++-+-|
T Consensus 215 P~di~v 220 (288)
T 3gv0_A 215 GEDVDI 220 (288)
T ss_dssp TTSCEE
T ss_pred CCceEE
Confidence 544333
No 101
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=96.80 E-value=0.011 Score=62.52 Aligned_cols=199 Identities=11% Similarity=-0.008 Sum_probs=119.0
Q ss_pred CCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC-------CCCC-eEEEeecCchhhHHHHHHHHHHcC---
Q 036525 7 AQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-------IRSP-YFFRGALNDSSQVGAITAIIKAFG--- 75 (783)
Q Consensus 7 ~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~-------~~~~-~~fr~~p~~~~~~~ai~~~l~~~g--- 75 (783)
.+|.+||-.........+...+...+||+|......+.... ..++ ++..+..++...+..++++|...|
T Consensus 61 ~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~ 140 (350)
T 3h75_A 61 DKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPV 140 (350)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhh
Confidence 47877764334445566667788899999998765443321 0111 366777888888899999987666
Q ss_pred ---C-eEEEEEEEeC--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC--ceEEEEEcChhhHH
Q 036525 76 ---W-REAVPIYVDN--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFIVHKLPSLGS 147 (783)
Q Consensus 76 ---w-~~vaii~~d~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~--~dvii~~~~~~~~~ 147 (783)
- ++++++.... ...+...++|.+++++.|. +.....+..+.+.+.-...+.++.+.. +++| ++.+...+.
T Consensus 141 ~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI-~~~~d~~a~ 218 (350)
T 3h75_A 141 PAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLV-WSANDEMAL 218 (350)
T ss_dssp CSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHH
T ss_pred cCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEE-EECChHHHH
Confidence 4 8999997442 2445667899999999986 222222222223334444555555444 4554 345666788
Q ss_pred HHHHHHHHcCccccc-eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 148 RIFEKANEIGLMNKG-CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 148 ~~~~~a~~~g~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
.+++++++.|+..++ ...++.|....... ....|.+.... . .....+|.|+.++...++.
T Consensus 219 g~~~al~~~G~~vP~di~vvg~d~~~~~l~-------~~~~~~lttv~----------~-~~~~~G~~av~~l~~~l~g 279 (350)
T 3h75_A 219 GAMQAARELGRKPGTDLLFSGVNSSPEALQ-------ALIDGKLSVLE----------A-GHFTLGGWALVALHDDALG 279 (350)
T ss_dssp HHHHHHHHTTCCBTTTBEEEEESCCHHHHH-------HHHHTSSCEEE----------E-CGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCCeEEEecCCCHHHHH-------HHHcCCeeEEE----------c-CchhhHHHHHHHHHHHHcC
Confidence 899999999987554 44444443221110 11122222211 0 1345788888888887753
No 102
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=96.78 E-value=0.0059 Score=63.21 Aligned_cols=194 Identities=12% Similarity=-0.002 Sum_probs=118.9
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHc--CCeEEEEEE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAF--GWREAVPIY 83 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--gw~~vaii~ 83 (783)
.+|.+|| -|..+.........+.+.++|+|......+. .+.+..+..++...+..++++|... |.++++++.
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~ 134 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPD-----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVIT 134 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4787776 4444443444555567789999998754322 1223446677888888999999887 999999998
Q ss_pred EeC-CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 84 VDN-QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 84 ~d~-~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
... .......++|.+++++.|..+.....+..+.+..+-...+.++.+. ++++|+ +.+...+..+++.+++.|+.
T Consensus 135 ~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~- 212 (305)
T 3g1w_A 135 LPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA- 212 (305)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-
T ss_pred CCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-
Confidence 432 2334567889999998877654433332223333444455555444 456654 45566788899999999986
Q ss_pred cceEEEEeCCcccccccCChhhhhccccee-EeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVI-DVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
.+...++.|...... .....+.+ .... ......++.|+.++...++.
T Consensus 213 ~di~vig~d~~~~~~-------~~~~~~~l~ttv~-----------~~~~~~g~~av~~l~~~i~g 260 (305)
T 3g1w_A 213 GEIQIISFDTDKGTL-------DLVDEGIISATLA-----------QGTWNMGYWSLTYLFHLHHG 260 (305)
T ss_dssp TTSEEEEESCCHHHH-------HHHHTTSSCEEEE-----------ECHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCHHHH-------HHHHcCceEEEEe-----------cChHHHHHHHHHHHHHHhcC
Confidence 455556655432111 11122322 2211 12456788888888877764
No 103
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=96.77 E-value=0.0057 Score=62.82 Aligned_cols=145 Identities=6% Similarity=-0.030 Sum_probs=91.7
Q ss_pred cCCeEEEEccCC-chhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEE-eecCchhhHHHHHHHHHHc------CCe
Q 036525 6 NAQVRVMLGPED-SMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFR-GALNDSSQVGAITAIIKAF------GWR 77 (783)
Q Consensus 6 ~~~V~aiIGp~~-S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr-~~p~~~~~~~ai~~~l~~~------gw~ 77 (783)
+.+|.+||.... +.........+.+.++|+|......+. .+++.. +..++...+..++++|... |.+
T Consensus 56 ~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r 130 (290)
T 2fn9_A 56 AAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA-----RGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAK 130 (290)
T ss_dssp HTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSC-----SSSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCC-----CCceEEEEeCCHHHHHHHHHHHHHHHhcccCCccc
Confidence 357888876333 332233444556689999998653321 122223 6677777788888998776 889
Q ss_pred E--EEEEEEe--CCcCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHH
Q 036525 78 E--AVPIYVD--NQYGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIF 150 (783)
Q Consensus 78 ~--vaii~~d--~~~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~ 150 (783)
+ ++++... ....+...+.|.+++++. |+++..... .+.+..+-...+.++.+. ++++|+. .+...+..++
T Consensus 131 ~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~ 207 (290)
T 2fn9_A 131 EIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQS--AEFDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAM 207 (290)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHH
T ss_pred ceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEecc--CCCCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHH
Confidence 9 6666643 234566788899999998 887653221 122223333455555433 5787765 4556678899
Q ss_pred HHHHHcCc
Q 036525 151 EKANEIGL 158 (783)
Q Consensus 151 ~~a~~~g~ 158 (783)
+++++.|+
T Consensus 208 ~al~~~g~ 215 (290)
T 2fn9_A 208 KACEAAGR 215 (290)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 99999997
No 104
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=96.77 E-value=0.0086 Score=61.72 Aligned_cols=193 Identities=12% Similarity=0.043 Sum_probs=116.5
Q ss_pred cccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEE
Q 036525 4 LNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIY 83 (783)
Q Consensus 4 i~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~ 83 (783)
+.+.+|.+||=...... ......+.+.++|+|......+... ..+..+..++..-+..++++|...|.++++++.
T Consensus 64 l~~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 138 (295)
T 3hcw_A 64 IKQRMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKPTSDID----HQFTHIDNDNILASENLTRHVIEQGVDELIFIT 138 (295)
T ss_dssp HHTTCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG----GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHhCCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCCCcccc----CCceEEecCcHHHHHHHHHHHHHcCCccEEEEc
Confidence 34457888774222222 2344455678999998764322110 023345667777788889999889999999998
Q ss_pred EeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc-----CceEEEEEcChhhHHHHHHHHHHc
Q 036525 84 VDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM-----QTRVFIVHKLPSLGSRIFEKANEI 156 (783)
Q Consensus 84 ~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~-----~~dvii~~~~~~~~~~~~~~a~~~ 156 (783)
.... ..+...++|.+++++.|+.+.... .+.+..+....+.++.+. .+++|+ +.+...+..+++.+++.
T Consensus 139 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~ 214 (295)
T 3hcw_A 139 EKGNFEVSKDRIQGFETVASQFNLDYQIIE---TSNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYEL 214 (295)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHTTCEEEEEE---ECSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHT
T ss_pred CCccchhHHHHHHHHHHHHHHcCCCeeEEe---ccCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHc
Confidence 6533 345678899999999998875221 122333333444444332 678765 45666788899999999
Q ss_pred CccccceE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 157 GLMNKGCV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 157 g~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
|+..++-+ .++-|... ......+ ..-.+. ......++.|+.++...++.
T Consensus 215 g~~vP~di~vig~D~~~-~~~~~~p-------~lttv~------------~~~~~~g~~a~~~l~~~i~~ 264 (295)
T 3hcw_A 215 NIEIPKDVMTATFNDSY-LTEIASP-------PQTCID------------IKPRMLGQQAGSAILNILKN 264 (295)
T ss_dssp TCCTTTTEEEEEECCSH-HHHTSSS-------CCEEEE------------CCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCceEEEEeCChh-HHhhCCC-------CeeEEE------------ECHHHHHHHHHHHHHHHhcC
Confidence 99765544 44444321 1111111 111111 12456788888888887764
No 105
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=96.77 E-value=0.013 Score=61.67 Aligned_cols=193 Identities=13% Similarity=0.093 Sum_probs=112.9
Q ss_pred cCCeEEEEccCCchhHHHHHccc-CCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPG-NKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~-~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+.+|.+||-...... ....+.. +..++|+|......+. .++...+..++..-+..++++|...|.+++++|..
T Consensus 112 ~~~vdgiI~~~~~~~-~~~~~~l~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g 185 (340)
T 1qpz_A 112 QKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEAK-----ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPG 185 (340)
T ss_dssp HTTCSEEEECCSCCC-HHHHHHHHTTTTSCEEEEEESSCC-----CSSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred cCCCCEEEEeCCCCC-hHHHHHHHhhCCCCEEEEecccCC-----CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 457888874222211 1222333 3369999987653221 12233466777777888889998889999999975
Q ss_pred eCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 85 DNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 85 d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
... ..+...++|.+++++.|+.+.....+..+.+..+-...+.++.+ ..+++|+. .+...+..+++.+++.|+..
T Consensus 186 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~v 264 (340)
T 1qpz_A 186 PLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRV 264 (340)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCT
T ss_pred CCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCC
Confidence 432 34567889999999999765322122212222333345555554 35787775 45566778899999999875
Q ss_pred cceE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 161 KGCV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 161 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
++-+ .++-|.... .....+ +.-.+.. .....++.|+.++...++.
T Consensus 265 P~disvig~D~~~~-~~~~~p-------~lttv~~------------~~~~~g~~a~~~l~~~i~~ 310 (340)
T 1qpz_A 265 PQDVSLIGYDNVRN-ARYFTP-------ALTTIHQ------------PKDSLGETAFNMLLDRIVN 310 (340)
T ss_dssp TTTCEEEEEECCTT-GGGSSS-------CCEEEEC------------CHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEeECCchH-hhccCC-------ceeEEec------------CHHHHHHHHHHHHHHHHcC
Confidence 5433 344333221 111111 1112211 2456788888888877764
No 106
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=96.75 E-value=0.02 Score=57.87 Aligned_cols=191 Identities=12% Similarity=0.044 Sum_probs=117.5
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-.............+.+.++|+|......+. +.+..+..++...+..++++|...|.++++++...
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~ 129 (272)
T 3o74_A 56 ARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDP------AHFCSVISDDRDASRQLAASLLSSAPRSIALIGAR 129 (272)
T ss_dssp HTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCT------TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred HcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCc------cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecC
Confidence 357877764322211233344556789999987643321 12334667777888889999988999999999865
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc---CceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~---~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
.. ..+...++|.+++++.|+++..... ...+.++-...+.++.+. .+++|+. .+...+..+++.+++.|+.+
T Consensus 130 ~~~~~~~~R~~gf~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp 206 (272)
T 3o74_A 130 PELSVSQARAGGFDEALQGYTGEVRRYQG--EAFSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDS 206 (272)
T ss_dssp TTSHHHHHHHHHHHHHTTTCCSEEEEEEE--SSSSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGG
T ss_pred CCCccHHHHHHHHHHHHHHcCCChheeec--CCCCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCc
Confidence 43 4556788999999999987654332 122333444445554433 4787755 56667888999999999833
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
.+...++-|.... .....+ +.-.+. ......++.|+.++...++.
T Consensus 207 ~di~vvg~d~~~~-~~~~~p-------~lttv~------------~~~~~~g~~a~~~l~~~i~~ 251 (272)
T 3o74_A 207 RQLQLGTFGDNQL-LDFLPL-------PVNAMA------------QQHGQIAATALELALAAIEE 251 (272)
T ss_dssp CCCEEEEESCCGG-GGTSSS-------CEEEEE------------CCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCChHH-HHhcCC-------CceEEE------------eCHHHHHHHHHHHHHHHHhC
Confidence 3344455443221 111111 111221 12456788999999888874
No 107
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.75 E-value=0.0031 Score=64.88 Aligned_cols=194 Identities=10% Similarity=0.020 Sum_probs=119.1
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH--cCCeEEEEEE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA--FGWREAVPIY 83 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~--~gw~~vaii~ 83 (783)
.+|.+|| .|..+.........+.+.++|+|......+ +.+..+..++...+..++++|.. .|.++++++.
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~ 132 (291)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFN 132 (291)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 4787776 565555566667777888999999865332 12345677778888999999977 8999999997
Q ss_pred EeCC--cCCcchHHHHHHHhhC-CceEeEEEecCCCCC-hhHHHHHHHHHhcc-----CceEEEEEcChhhHHHHHHHHH
Q 036525 84 VDNQ--YGEAMIPSLTDALHAI-DTRVPYRSVISPLAT-DDQIEKELYKLFTM-----QTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 84 ~d~~--~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~-~~d~~~~l~~l~~~-----~~dvii~~~~~~~~~~~~~~a~ 154 (783)
.... ......++|.+++++. |++++....+..... ..+-...+.++.+. ++++|+ +.+...+..+++.++
T Consensus 133 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~ 211 (291)
T 3l49_A 133 GFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQ 211 (291)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHH
Confidence 4332 3345678899999998 677544333322222 22333445555443 567775 456677888899999
Q ss_pred HcCccccceEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 155 EIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 155 ~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+.|+. +...++.|........+ .+...-.+.... ......++.|+.++...++.
T Consensus 212 ~~g~~--di~vvg~d~~~~~~~~i----~~~~~p~lttv~-----------~~~~~~g~~av~~l~~~i~g 265 (291)
T 3l49_A 212 AAGRT--DIRTYGVDGSPEFVEMV----ADPESPAGAVAA-----------QQPSEIGKLAVQNVARHLAG 265 (291)
T ss_dssp HTTCC--SCEEEEEECCHHHHHHH----HCTTSCEEEEEE-----------CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCC--CeEEEEecCCHHHHHHH----HCCCCCeEEEEe-----------cCHHHHHHHHHHHHHHHhcC
Confidence 99985 44445444322111000 000001122211 12456788888888887763
No 108
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.75 E-value=0.012 Score=59.82 Aligned_cols=150 Identities=10% Similarity=0.014 Sum_probs=96.6
Q ss_pred CeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeCC
Q 036525 8 QVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQ 87 (783)
Q Consensus 8 ~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~ 87 (783)
+|.+||-....... .....+.+.++|+|......+ .+.+..+..++...+..++++|...|.++++++..+..
T Consensus 57 ~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 129 (277)
T 3cs3_A 57 MVDGAIILDWTFPT-KEIEKFAERGHSIVVLDRTTE------HRNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK 129 (277)
T ss_dssp TCSEEEEECTTSCH-HHHHHHHHTTCEEEESSSCCC------STTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTT
T ss_pred cccEEEEecCCCCH-HHHHHHHhcCCCEEEEecCCC------CCCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence 56666532222112 223344568999999764322 12345567777778888899998889999999986533
Q ss_pred --cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc---CceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 88 --YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 88 --~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~---~~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
......+.|.+++++.|+++. . +..+.+..+-...+.++.+. ++++|+. .+...+..+++.+++.|+..++
T Consensus 130 ~~~~~~R~~gf~~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 205 (277)
T 3cs3_A 130 GYDSQERLAVSTRELTRFGIPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVAETNYQMGK 205 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHTTSSCCBTT
T ss_pred CccHHHHHHHHHHHHHHcCCCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCC
Confidence 345668889999999998775 2 21122333444556666544 5677654 4566678899999999987655
Q ss_pred eEEEEe
Q 036525 163 CVWIMT 168 (783)
Q Consensus 163 ~~~i~~ 168 (783)
-+.|++
T Consensus 206 di~vvg 211 (277)
T 3cs3_A 206 DIRIIG 211 (277)
T ss_dssp TEEEEC
T ss_pred cEEEEE
Confidence 555544
No 109
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=96.72 E-value=0.0052 Score=63.26 Aligned_cols=190 Identities=9% Similarity=-0.003 Sum_probs=115.4
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-.........+...+.+.++|+|......+. +.+..+..++...+..++++|...|.++++++...
T Consensus 74 ~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 147 (293)
T 2iks_A 74 QRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDR------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGAL 147 (293)
T ss_dssp HTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCCT------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEEC
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccCc------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 357888875333222223444556789999998653221 22345667777788889999988899999999865
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
.. ..+...++|.+++++.|++.... +..+.+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..+
T Consensus 148 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 224 (293)
T 2iks_A 148 PELSVSFLREQGFRTAWKDDPREVHFL--YANSYEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLP 224 (293)
T ss_dssp TTSHHHHHHHHHHHHHHTTCCCCEEEE--EESSSCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCC
T ss_pred cccccHHHHHHHHHHHHHHcCCCccEE--EcCCCChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCC
Confidence 33 34567888999999999744322 11122333334455565544 4677665 455567788999999998655
Q ss_pred c-eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 162 G-CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 162 ~-~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
+ ...++-|.... . +...+.+.... ......++.|+.++...++
T Consensus 225 ~di~vvg~d~~~~-~--------~~~~p~lttv~-----------~~~~~~g~~a~~~l~~~i~ 268 (293)
T 2iks_A 225 SDLAIATFGDNEL-L--------DFLQCPVLAVA-----------QRHRDVAERVLEIVLASLD 268 (293)
T ss_dssp SSCEEEEESCCGG-G--------GGCSSEEEEEE-----------CCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCHHH-H--------hhcCCCeeEEe-----------CCHHHHHHHHHHHHHHHHh
Confidence 4 33444443221 1 12223332211 1245678888888887775
No 110
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.0068 Score=63.53 Aligned_cols=156 Identities=10% Similarity=0.116 Sum_probs=98.6
Q ss_pred cCCeEEEEccCCchh-HHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHc--CCeEEEEE
Q 036525 6 NAQVRVMLGPEDSMP-TNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAF--GWREAVPI 82 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~-~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--gw~~vaii 82 (783)
+.+|.+||....+.. .......+...++|+|......+. .+.+..+..++...+..++++|... |.++++++
T Consensus 60 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i 134 (325)
T 2x7x_A 60 DEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVEL 134 (325)
T ss_dssp HTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred HcCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEE
Confidence 357888886444332 233444556689999998643221 1234456677777888888998764 99999999
Q ss_pred EEeC--CcCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcC
Q 036525 83 YVDN--QYGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 83 ~~d~--~~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
..+. .......++|.+++++. |+++.... ..+.+..+-...+.++.+ ..+++|+. .+...+..+++++++.|
T Consensus 135 ~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~G 211 (325)
T 2x7x_A 135 TGLSGSTPAMERHQGFMAAISKFPDIKLIDKA--DAAWERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAG 211 (325)
T ss_dssp ESCTTSHHHHHHHHHHHHHHHTCTEEEEEEEE--ECTTSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTT
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCCEEEeee--cCCCCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcC
Confidence 8543 34456678999999998 88765322 112222333344555543 35787765 44556777889999999
Q ss_pred ccccceEEEEeCC
Q 036525 158 LMNKGCVWIMTDG 170 (783)
Q Consensus 158 ~~~~~~~~i~~~~ 170 (783)
+ +.+...++.|.
T Consensus 212 i-p~dv~vig~D~ 223 (325)
T 2x7x_A 212 R-EKEMIFVGIDA 223 (325)
T ss_dssp C-TTSSEEEEEEC
T ss_pred C-CCCeEEEEECC
Confidence 6 34444555543
No 111
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=96.71 E-value=0.008 Score=62.77 Aligned_cols=155 Identities=4% Similarity=-0.036 Sum_probs=97.1
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH---cCCeEEEEE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA---FGWREAVPI 82 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~---~gw~~vaii 82 (783)
.+|.+|| .|..+.....+...+.+.+||+|.+....+. . ....+.+..++...+..++++|.. .|.+++++|
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~~---~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i 134 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKP---E-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFF 134 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCG---G-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCCC---C-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 4788754 6666555455666677889999998643211 1 122333356677778888888866 578999999
Q ss_pred EEe--CCcCCcchHHHHHHHhhC--CceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHc
Q 036525 83 YVD--NQYGEAMIPSLTDALHAI--DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEI 156 (783)
Q Consensus 83 ~~d--~~~G~~~~~~~~~~l~~~--g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~ 156 (783)
... +...+...+.+.+.+++. ++++..... ...+..+-...+.++.+. ++++|+.. +...+..+++++++.
T Consensus 135 ~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~aI~~~-nD~~A~g~~~al~~~ 211 (316)
T 1tjy_A 135 YSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQF--GYNDATKSLQTAEGIIKAYPDLDAIIAP-DANALPAAAQAAENL 211 (316)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCSSCCEEEEC-STTHHHHHHHHHHHT
T ss_pred EcCCCChhHHHHHHHHHHHHHhhCCCcEEEEecc--CCCCHHHHHHHHHHHHHhCCCCCEEEEC-CCccHHHHHHHHHHc
Confidence 843 334566778889999775 556554322 122333444555555544 45666554 455677788899999
Q ss_pred CccccceEEEEeCC
Q 036525 157 GLMNKGCVWIMTDG 170 (783)
Q Consensus 157 g~~~~~~~~i~~~~ 170 (783)
| . .....++.|.
T Consensus 212 G-~-~dv~VvG~D~ 223 (316)
T 1tjy_A 212 K-R-NNLAIVGFST 223 (316)
T ss_dssp T-C-CSCEEEEBCC
T ss_pred C-C-CCEEEEEeCC
Confidence 9 5 4444555443
No 112
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.69 E-value=0.004 Score=64.12 Aligned_cols=191 Identities=13% Similarity=0.016 Sum_probs=114.3
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-....... .....+...++|+|......+ . +.+..+..++..-+..++++|...|.+++++|...
T Consensus 70 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 142 (289)
T 2fep_A 70 GKQVDGIVFMGGNITD-EHVAEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGP 142 (289)
T ss_dssp HTTCSEEEECCSCCCH-HHHHHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESC
T ss_pred hCCCCEEEEecCCCCH-HHHHHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4578888743222122 223334568999999865322 1 12334667777788889999988899999999865
Q ss_pred C---CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 86 N---QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 86 ~---~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
. .......+.|.+++++.|+++.....+..+.+..+-...+.++.+. .+++|+. .+...+..+++.+++.|+..
T Consensus 143 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~v 221 (289)
T 2fep_A 143 MAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSI 221 (289)
T ss_dssp TTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCT
T ss_pred ccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCC
Confidence 3 3456778999999999998654211111122333334455665543 5677765 45566888899999999865
Q ss_pred cc-eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 161 KG-CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 161 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
++ ...++-|..... ....+.+.... ......++.|+.++...++
T Consensus 222 P~di~vvg~D~~~~~---------~~~~p~lttv~-----------~~~~~~g~~a~~~l~~~i~ 266 (289)
T 2fep_A 222 PEDLDIIGFDNTRLS---------LMVRPQLSTVV-----------QPTYDIGAVAMRLLTKLMN 266 (289)
T ss_dssp TTTCEEEEEECCGGG---------TSSSSCCEEEE-----------CCHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECChHHH---------hhcCCceeEEe-----------CCHHHHHHHHHHHHHHHhc
Confidence 44 334444432211 11112222111 1245678888888877774
No 113
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=96.68 E-value=0.032 Score=57.16 Aligned_cols=190 Identities=11% Similarity=0.047 Sum_probs=116.2
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-.........+ ..+.+ ++|+|......+ . +.+..+..++..-+..++++|...|.++++++...
T Consensus 64 ~~~vdgiIi~~~~~~~~~~-~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (289)
T 3k9c_A 64 RERCEAAILLGTRFDTDEL-GALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGA 135 (289)
T ss_dssp TTTEEEEEEETCCCCHHHH-HHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCT
T ss_pred hCCCCEEEEECCCCCHHHH-HHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 4588888743222222333 33445 999998765332 1 22345667777888889999988999999999854
Q ss_pred CC-cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 86 NQ-YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 86 ~~-~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
.. ......++|.+++++.|+.+... .+..+.+..+-...+.++.+ ..+++|+. .+...+..+++.+++.|+..++
T Consensus 136 ~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~ 213 (289)
T 3k9c_A 136 DAPGGADRRAGFLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVVA-FNDRCATGVLDLLVRSGRDVPA 213 (289)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 33 34566789999999999875432 23323333344455566554 35677654 4566788899999999987554
Q ss_pred eE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 163 CV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 163 ~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
-+ .++-|... ......+ +.-.+. ......++.|+.++...++.
T Consensus 214 di~vig~D~~~-~~~~~~p-------~lttv~------------~~~~~~g~~a~~~l~~~i~~ 257 (289)
T 3k9c_A 214 DISVVGYDDSR-LARIPHV-------QMTTIS------------QDATHMAEAAVDGALAQISG 257 (289)
T ss_dssp TCEEEEEECCT-TTTCTTT-------CCEEEE------------CCHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCHH-HHhcCCC-------CcceEe------------cCHHHHHHHHHHHHHHHhcC
Confidence 43 34433221 1111111 111111 12456788888888887764
No 114
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=96.68 E-value=0.012 Score=59.76 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=118.1
Q ss_pred eEEEEc-cCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHc----CCeEEEEEE
Q 036525 9 VRVMLG-PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAF----GWREAVPIY 83 (783)
Q Consensus 9 V~aiIG-p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~----gw~~vaii~ 83 (783)
|.+||- |..+.........+.+.++|+|......+. .+.+..+..++...+..++++|... |.++++++.
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~ 134 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLR 134 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECB
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEE
Confidence 888774 433445556666677889999998654321 1233456677888889999999877 899999998
Q ss_pred Ee--CCcCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 84 VD--NQYGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 84 ~d--~~~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
.+ ....+...++|.+++++. |+++.. ....+.+..+....+.++.+. ++++|+. .+...+..+++.+++.|+
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 135 LRAGNASTDQREQGFLDVLRKHDKIRIIA--APYAGDDRGAARSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM 211 (276)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEE--CCBCCSSHHHHHHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC
T ss_pred cCCCchhHHHHHHHHHHHHHhCCCcEEEE--EecCCCcHHHHHHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC
Confidence 54 334567789999999998 887753 222223333444555555544 4566554 455667789999999998
Q ss_pred cccceEEEEeCCcccccccCChhhhhccccee-EeeeCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 159 MNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVI-DVRPYENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
+.+...++.|....... ....|.+ +... ......++.|+.++...++
T Consensus 212 -p~di~vig~d~~~~~~~-------~~~~~~l~ttv~-----------~~~~~~g~~a~~~l~~~i~ 259 (276)
T 3ksm_A 212 -SKQFGFIGFDQTEELEA-------AMYAGEISNLVV-----------QNPEYMGYLAVQRALDLVR 259 (276)
T ss_dssp -TTSSEEEEESCCHHHHH-------HHHTTSSSEEEE-----------CCHHHHHHHHHHHHHHHHT
T ss_pred -CCCeEEEEeCCCHHHHH-------HHHcCCceEEEE-----------eCHHHhHHHHHHHHHHHHc
Confidence 44444555554321110 1112322 1111 1235678888888887775
No 115
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=96.63 E-value=0.0023 Score=67.43 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=111.8
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+|| ....... +.+...++|+|......+. . +..+..++...+..++++|...|.+++++|...
T Consensus 114 ~~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 181 (330)
T 3ctp_A 114 SHRVAGII-ASRSQCE----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGP 181 (330)
T ss_dssp HTTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred hCCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 45788888 4332221 3345789999998654321 1 224556677777888899988899999999865
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
.. .++...++|.+++++.|+.+. ...+..+.+..+-...+.++.+ .++++|++. +...+..+++++++.|+..++
T Consensus 182 ~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~ 259 (330)
T 3ctp_A 182 EVFEATELRYKGFLDGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFVF-NDIAAATVMRALKKRGVSIPQ 259 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEES-SHHHHHHHHHHHHHTTCCTTT
T ss_pred ccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCC
Confidence 33 456678899999999998775 3333212121121122334333 367887764 455677889999999987554
Q ss_pred eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 163 CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
-+-+++-...... +.....+.... ......++.|+.++.+.++.
T Consensus 260 disvvg~D~~~~~--------~~~~p~lttv~-----------~~~~~~g~~a~~~l~~~i~g 303 (330)
T 3ctp_A 260 EVQIIGFDNSFIG--------ELLYPSLTTIN-----------QPIEALAYTIIELLIKIING 303 (330)
T ss_dssp TCEEECSBCCTHH--------HHSSSCCBEEE-----------CCHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECChHHH--------hcCCCCcceEE-----------CCHHHHHHHHHHHHHHHhcC
Confidence 4444332211110 11111121111 12456788888888887763
No 116
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=96.52 E-value=0.0039 Score=64.47 Aligned_cols=196 Identities=4% Similarity=-0.106 Sum_probs=116.8
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcC-----CeEEE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFG-----WREAV 80 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~g-----w~~va 80 (783)
.+|.+|| .|..+.........+. .+||+|......+.......+.+..+..++...+..++++|...| .++++
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~ 140 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIA 140 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEE
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 4677776 5544442233344455 899999985433222222345677788888888899999998888 89999
Q ss_pred EEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHH-hccCceEEEEEcChhhHHHHHHHHHHcC
Q 036525 81 PIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKL-FTMQTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 81 ii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l-~~~~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
++... ........++|.+++++.|+++.... ..+.+...-...+.++ +...+++ | +++...+..+++.+++.|
T Consensus 141 ~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g 216 (304)
T 3o1i_D 141 LLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSAD 216 (304)
T ss_dssp EECCCC-----CHHHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTT
T ss_pred EEECCCCcchHHHHHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcC
Confidence 99743 33456678999999999998876533 2222322333334433 3346788 5 456778888999999999
Q ss_pred ccccceEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 158 LMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 158 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+. .+...++.+...... ....+|.+.... .-..+ ..++.|+.++.+.++.
T Consensus 217 ~~-~di~vvg~d~~p~~~-------~~i~~g~~~~~~---------~~~~~-~~g~~av~~l~~~i~g 266 (304)
T 3o1i_D 217 KT-HDIGLVSVYLSHGVY-------RGLLRNKVLFAP---------TDKMV-QQGRLSVMQAAHYLRH 266 (304)
T ss_dssp CG-GGSEEBCSSCCHHHH-------HHHTTTSCCBCC---------BCCHH-HHHHHHHHHHHHHHTT
T ss_pred CC-CCeEEEEeCCCHHHH-------HHHHcCcceEEE---------ecCHH-HHHHHHHHHHHHHHcC
Confidence 85 333333332111110 111223221111 01223 7789999988888864
No 117
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=96.47 E-value=0.0052 Score=63.41 Aligned_cols=158 Identities=11% Similarity=0.137 Sum_probs=100.2
Q ss_pred cccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEE
Q 036525 4 LNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIY 83 (783)
Q Consensus 4 i~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~ 83 (783)
+.+.+|.+||=....... .....+.+.++|+|......+ .+.+-.+..++..-+..++++|...|.++++++.
T Consensus 61 l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 133 (294)
T 3qk7_A 61 VETRRVDALIVAHTQPED-FRLQYLQKQNFPFLALGRSHL------PKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVS 133 (294)
T ss_dssp HHHTCCSEEEECSCCSSC-HHHHHHHHTTCCEEEESCCCC------SSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHcCCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEECCCCC------CCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEe
Confidence 344578887632222122 344456678999998865321 1223446777888888899999889999999998
Q ss_pred EeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 84 VDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 84 ~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.... ..+...++|.+++++.|+.+.....+..+.+..+-...+.++.+ ..+++|+. .+...+..+++.+++.|+.
T Consensus 134 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 134 TDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp ESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCS
T ss_pred CCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCC
Confidence 6543 34567889999999999775321111112223333344555544 35677664 5666788899999999997
Q ss_pred ccceE-EEEeC
Q 036525 160 NKGCV-WIMTD 169 (783)
Q Consensus 160 ~~~~~-~i~~~ 169 (783)
.++-+ .++-|
T Consensus 213 vP~di~vig~D 223 (294)
T 3qk7_A 213 GGEGISLIAYD 223 (294)
T ss_dssp STTSCEEEEET
T ss_pred CCCceEEEeec
Confidence 65433 44444
No 118
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=96.45 E-value=0.01 Score=61.57 Aligned_cols=158 Identities=8% Similarity=-0.005 Sum_probs=96.3
Q ss_pred CCeEEEEccCCc-hhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcC---CeEEEEE
Q 036525 7 AQVRVMLGPEDS-MPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFG---WREAVPI 82 (783)
Q Consensus 7 ~~V~aiIGp~~S-~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~g---w~~vaii 82 (783)
.+|.+||-...+ .........+...++|+|......+.. ...+++..+..++...+..++++|...| .++++++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i 134 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVEL 134 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 478887753333 222334444566899999876432211 1111345567777777888888987766 7999999
Q ss_pred EEeC--CcCCcchHHHHHHHhhCCc-eEeEEEecCCCCChhHHHHHHHHHhc-----cCceEEEEEcChhhHHHHHHHHH
Q 036525 83 YVDN--QYGEAMIPSLTDALHAIDT-RVPYRSVISPLATDDQIEKELYKLFT-----MQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 83 ~~d~--~~G~~~~~~~~~~l~~~g~-~v~~~~~i~~~~~~~d~~~~l~~l~~-----~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
.... ...+...++|++++++.|. ++.... ..+.+..+-...+.++.+ ..+++|+. .+...+..++++++
T Consensus 135 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~ 211 (306)
T 2vk2_A 135 QGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ--SGDFTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIK 211 (306)
T ss_dssp ECSTTCHHHHHHHHHHHHHTTTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHH
T ss_pred EcCCCChhHHHHHHHHHHHHhhCCCeEEEEec--cCCCcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHH
Confidence 8543 2345667889999999885 333211 112222333344455443 35787765 45566778999999
Q ss_pred HcCccccc-eEEEEeC
Q 036525 155 EIGLMNKG-CVWIMTD 169 (783)
Q Consensus 155 ~~g~~~~~-~~~i~~~ 169 (783)
+.|+..++ ...++-|
T Consensus 212 ~~G~~vP~di~vig~D 227 (306)
T 2vk2_A 212 EAGLKPGKDILTGSID 227 (306)
T ss_dssp HTTCCBTTTBEEEEEE
T ss_pred HcCCCCCCCeEEEeec
Confidence 99986554 3344444
No 119
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.38 E-value=0.0037 Score=53.29 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=61.1
Q ss_pred HHHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcc-c-ccccccchhhhHHHHHHHHHHHHHHhhhhhhhee
Q 036525 428 FFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILTQSYTASLTSLL 505 (783)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~L 505 (783)
.+++.+++++.+|+..+ +....++.+++|+++.++...| + ..|.+..+|++.++|+++++.+.+...+.+.+.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777787643 2334578999999999999777 3 3688999999999999999999999999999888
Q ss_pred ecc
Q 036525 506 TVQ 508 (783)
Q Consensus 506 t~~ 508 (783)
+..
T Consensus 94 ~~~ 96 (103)
T 2k1e_A 94 VRR 96 (103)
T ss_dssp GGH
T ss_pred HHH
Confidence 653
No 120
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=96.36 E-value=0.031 Score=57.52 Aligned_cols=143 Identities=10% Similarity=0.067 Sum_probs=92.5
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCC----C--CCCCeEEEeecCchhhHHHHHHHHHHc--CC
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLT----S--IRSPYFFRGALNDSSQVGAITAIIKAF--GW 76 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls----~--~~~~~~fr~~p~~~~~~~ai~~~l~~~--gw 76 (783)
.+.+|++||... +.....+... ..++|+|......+... + ....++..+. +..-+...+++|... |.
T Consensus 59 ~~~~vDgII~~~-~~~~~~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~ 133 (295)
T 3lft_A 59 VANGNDLVVGIA-TPAAQGLASA--TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNV 133 (295)
T ss_dssp TTSSCSEEEEES-HHHHHHHHHH--CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTC
T ss_pred HhcCCCEEEECC-cHHHHHHHHc--CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCC
Confidence 356888888653 2233333332 47899998765444321 1 1123444443 334467777888777 99
Q ss_pred eEEEEEEEeCC-cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHH
Q 036525 77 REAVPIYVDNQ-YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANE 155 (783)
Q Consensus 77 ~~vaii~~d~~-~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~ 155 (783)
+++++|+.... .++...+.+++++++.|+++...... +..+....+.++. .++|+|++.... .+...++.+.+
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~-~~~dai~~~~D~-~a~g~~~~l~~ 207 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP----STNEIASTVTVMT-SKVDAIWVPIDN-TIASGFPTVVS 207 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHT-TTCSEEEECSCH-HHHHTHHHHHH
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHH-hcCCEEEECCch-hHHHHHHHHHH
Confidence 99999997654 34667889999999999988765432 2346777777776 478998886543 34445666777
Q ss_pred cCc
Q 036525 156 IGL 158 (783)
Q Consensus 156 ~g~ 158 (783)
.|.
T Consensus 208 ~~~ 210 (295)
T 3lft_A 208 SNQ 210 (295)
T ss_dssp HTT
T ss_pred HHH
Confidence 664
No 121
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=96.32 E-value=0.048 Score=57.20 Aligned_cols=183 Identities=12% Similarity=0.095 Sum_probs=110.6
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
..+|.+||-... ...+...++|+|......+. +.+..+..++..-+..++++|...|.++++++...
T Consensus 117 ~~~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 183 (333)
T 3jvd_A 117 SIQAAGIIHVPV-------VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGE 183 (333)
T ss_dssp HHTCSEEEECCC-------TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESC
T ss_pred hCCCCEEEEcch-------HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 346777764322 45567789999998653321 12234566777788888899988899999999865
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC-ceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~-~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
.. ..+...++|.+++++.|+..... . .+.+.++-...+.++.+.. +++|+. .+...+..+++.+++.|+..++
T Consensus 184 ~~~~~~~~R~~Gf~~al~~~g~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 259 (333)
T 3jvd_A 184 ESLSTTQERMRGISHAASIYGAEVTFH--F-GHYSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPH 259 (333)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCEEEEE--E-CCSSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCccHHHHHHHHHHHHHHCCCCEEEe--c-CCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 33 34567889999999999872111 0 1223334444555554333 787764 5566777899999999987554
Q ss_pred eE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 163 CV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 163 ~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
-+ .++-|... ......+ +.-.+. ......++.|+.++...++.
T Consensus 260 disvig~D~~~-~~~~~~p-------~lttv~------------~~~~~~g~~Av~~L~~~i~~ 303 (333)
T 3jvd_A 260 DVVIGGYDDPE-WYSFVGA-------GITTFV------------PPHEEMGKEAVRLLVDLIEN 303 (333)
T ss_dssp TCEEEEESCCG-GGGGSTT-------SCEEEE------------CCHHHHHHHHHHHHHHHHHS
T ss_pred ceEEEEECChH-HHHhcCC-------CceEEe------------cCHHHHHHHHHHHHHHHhcC
Confidence 43 44444322 1111111 111111 12456788888888887764
No 122
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=96.31 E-value=0.017 Score=59.26 Aligned_cols=190 Identities=11% Similarity=0.028 Sum_probs=116.5
Q ss_pred CCeEEEEc-cCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH-c-CCe-----E
Q 036525 7 AQVRVMLG-PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA-F-GWR-----E 78 (783)
Q Consensus 7 ~~V~aiIG-p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~-gw~-----~ 78 (783)
.+|.+||- |..+.........+.+.++|+|......+. .+.+..+..++...+..++++|.. + |.+ +
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~ 137 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGR 137 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEE
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCce
Confidence 47777764 434443334555666789999998654332 123455677888888888998876 5 777 9
Q ss_pred EEEEEEe--CCcCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHH
Q 036525 79 AVPIYVD--NQYGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKA 153 (783)
Q Consensus 79 vaii~~d--~~~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a 153 (783)
++++... ....+...++|.+++++. |+++..... .+.+..+-...+.++.+. ++++|+. .+...+..+++.+
T Consensus 138 i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al 214 (293)
T 3l6u_A 138 IVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVS--GNYDPVTSERVMRQVIDSGIPFDAVYC-HNDDIAMGVLEAL 214 (293)
T ss_dssp EEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeecc--CCCCHHHHHHHHHHHHHhCCCCCEEEE-CCchHHHHHHHHH
Confidence 9999843 334456788999999999 988765432 222333444555555543 4566654 5666678899999
Q ss_pred HHcCccccceEEEEeCCcccccccCChhhhhcccc-eeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 036525 154 NEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQG-VIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVE 224 (783)
Q Consensus 154 ~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~ 224 (783)
++.|+. +...++.|....... ....| .+.... ......++.|+.++...++
T Consensus 215 ~~~g~~--di~vig~d~~~~~~~-------~~~~~~~lttv~-----------~~~~~~g~~a~~~l~~~i~ 266 (293)
T 3l6u_A 215 KKAKIS--GKIVVGIDGNRAILE-------AVDMKSMDATVV-----------QSAEEMMKVAFSALKLHTK 266 (293)
T ss_dssp HHTTCC--CCEEEEEECCHHHHH-------HHHTTSSCEEEE-----------CCHHHHHHHHHHHHHHHHT
T ss_pred HhCCCC--CeEEEEecCCHHHHH-------HHHcCCccEEEe-----------CCHHHHHHHHHHHHHHHHc
Confidence 999985 444444443221100 00112 111111 1245678888888888775
No 123
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=96.26 E-value=0.04 Score=56.14 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=95.2
Q ss_pred cCCeEEEEc-cCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHc-C-CeEEEEE
Q 036525 6 NAQVRVMLG-PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAF-G-WREAVPI 82 (783)
Q Consensus 6 ~~~V~aiIG-p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~-g-w~~vaii 82 (783)
+.+|.+||- |..+.........+.+.++|+|......+ . .+.+..+..++...+..++++|... | .++++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i 129 (283)
T 2ioy_A 55 QQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSAN---G--GDVVCHIASDNVKGGEMAAEFIAKALKGKGNVVEL 129 (283)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---S--SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HcCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCC---C--cceeEEEecChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 357888763 44333323344445678999998764321 1 1223345566677788888988766 5 8999999
Q ss_pred EEeCC--cCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcC
Q 036525 83 YVDNQ--YGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 83 ~~d~~--~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
..... ..+...++|++++++. |+++..... .+.+..+-...+.++.+. .+++|+ +.+...+..+++.+++.|
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G 206 (283)
T 2ioy_A 130 EGIPGASAARDRGKGFDEAIAKYPDIKIVAKQA--ADFDRSKGLSVMENILQAQPKIDAVF-AQNDEMALGAIKAIEAAN 206 (283)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCSCCCEEE-ESSHHHHHHHHHHHHHTT
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCCEEEeecc--CCCCHHHHHHHHHHHHHhCCCccEEE-ECCchHHHHHHHHHHHCC
Confidence 85432 2355678899999998 887654322 122333334445555443 456654 455567888899999999
Q ss_pred ccccceEEEEeCC
Q 036525 158 LMNKGCVWIMTDG 170 (783)
Q Consensus 158 ~~~~~~~~i~~~~ 170 (783)
+ .+...++-|.
T Consensus 207 ~--~di~viG~D~ 217 (283)
T 2ioy_A 207 R--QGIIVVGFDG 217 (283)
T ss_dssp C--CCCEEEEEEC
T ss_pred C--CCcEEEEeCC
Confidence 7 4444555553
No 124
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=96.26 E-value=0.015 Score=60.45 Aligned_cols=156 Identities=8% Similarity=0.010 Sum_probs=98.1
Q ss_pred cCCeEEEEc-cCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHH-HcCCeEEEEEE
Q 036525 6 NAQVRVMLG-PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIK-AFGWREAVPIY 83 (783)
Q Consensus 6 ~~~V~aiIG-p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~gw~~vaii~ 83 (783)
+.+|.+||- |............+.+.+||+|......+. . +....+..++...+..++++|. ..|.+++++|.
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~ 130 (313)
T 3m9w_A 56 NRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---A--DIDFYISFDNEKVGELQAKALVDIVPQGNYFLMG 130 (313)
T ss_dssp HTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---S--CCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---C--CceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 347877763 444433345556677889999998754322 1 1113456677788888999987 89999999998
Q ss_pred EeCC--cCCcchHHHHHHHhhC----CceEeEEEecCCCCChhHHHHHHHHHhc---cCceEEEEEcChhhHHHHHHHHH
Q 036525 84 VDNQ--YGEAMIPSLTDALHAI----DTRVPYRSVISPLATDDQIEKELYKLFT---MQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 84 ~d~~--~G~~~~~~~~~~l~~~----g~~v~~~~~i~~~~~~~d~~~~l~~l~~---~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
.... ..+...++|++++++. ++++..... ..+.+..+-...+.++.+ .++++|+. .+...+..++++++
T Consensus 131 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~ 208 (313)
T 3m9w_A 131 GSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAVVA-SNDATAGGAIQALS 208 (313)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEEE-SSHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEEE-CCCchHHHHHHHHH
Confidence 4432 3445678889999887 566654432 212222333344444443 35677655 45567788999999
Q ss_pred HcCccccceEEEEeC
Q 036525 155 EIGLMNKGCVWIMTD 169 (783)
Q Consensus 155 ~~g~~~~~~~~i~~~ 169 (783)
+.|+. .+...++.|
T Consensus 209 ~~G~~-~di~vig~d 222 (313)
T 3m9w_A 209 AQGLS-GKVAISGQD 222 (313)
T ss_dssp TTTCT-TTSEECCCS
T ss_pred HcCCC-CCcEEEecC
Confidence 99985 334444444
No 125
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=96.25 E-value=0.012 Score=62.32 Aligned_cols=193 Identities=9% Similarity=0.001 Sum_probs=115.5
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||=..... .......+...++|+|...... . .+....+..++..-+..++++|...|.+++++|...
T Consensus 122 ~~~vdGiIi~~~~~-~~~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 194 (344)
T 3kjx_A 122 SWRPSGVIIAGLEH-SEAARAMLDAAGIPVVEIMDSD---G---KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTK 194 (344)
T ss_dssp TTCCSEEEEECSCC-CHHHHHHHHHCSSCEEEEEECS---S---CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESS
T ss_pred hCCCCEEEEECCCC-CHHHHHHHHhCCCCEEEEeCCC---C---CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 34677765321111 1234455667899999875211 1 122345667777888889999988899999999865
Q ss_pred C---CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 86 N---QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 86 ~---~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
. .......++|.+++++.|+.+.....+..+.+..+-...+.++.+ .++++|+ +.+...+..+++.+++.|+..
T Consensus 195 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~v 273 (344)
T 3kjx_A 195 MPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDI 273 (344)
T ss_dssp TTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred cccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCC
Confidence 3 334566789999999999876544433322232333344444433 3677776 456667888999999999976
Q ss_pred cceEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 161 KGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
++-+-|++-..........+ ..-.+. ......++.|+.++...++.
T Consensus 274 P~disvvg~D~~~~~~~~~p-------~lttv~------------~~~~~~g~~av~~l~~~i~~ 319 (344)
T 3kjx_A 274 PGQIGLAGFNNVELLQGLPR-------KLATMD------------ACRLEIGRKAAEIIAKRLED 319 (344)
T ss_dssp TTTCEEECSBCCGGGGGSSS-------CCBEEB------------CCHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEECChHHHhccCC-------CccEEe------------CCHHHHHHHHHHHHHHHhcC
Confidence 65444443221111111111 111111 12456788888888887764
No 126
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=96.13 E-value=0.013 Score=60.61 Aligned_cols=191 Identities=15% Similarity=0.083 Sum_probs=114.0
Q ss_pred ccCCeEEEEccCCchhHH-HHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEE
Q 036525 5 NNAQVRVMLGPEDSMPTN-FIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIY 83 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~-av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~ 83 (783)
.+.+|.+||=........ .+..+ .+ ++|+|......+. .+..+..++..-+..++++|...|.++++++.
T Consensus 68 ~~~~vdgiI~~~~~~~~~~~~~~l-~~-~iPvV~i~~~~~~-------~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 138 (303)
T 3kke_A 68 SEGRVDGVLLQRREDFDDDMLAAV-LE-GVPAVTINSRVPG-------RVGSVILDDQKGGGIATEHLITLGHSRIAFIS 138 (303)
T ss_dssp HSCSSSEEEECCCTTCCHHHHHHH-HT-TSCEEEESCCCTT-------CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HhCCCcEEEEecCCCCcHHHHHHH-hC-CCCEEEECCcCCC-------CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 345788876432222222 33334 44 9999998754332 12235667777888889999889999999998
Q ss_pred EeC--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHH-----hcc--CceEEEEEcChhhHHHHHHHHH
Q 036525 84 VDN--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKL-----FTM--QTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 84 ~d~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l-----~~~--~~dvii~~~~~~~~~~~~~~a~ 154 (783)
... ...+...++|.+++++.|+.+........+.+.++-...+.++ .+. .+++|+. .+...+..+++.++
T Consensus 139 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~ 217 (303)
T 3kke_A 139 GTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTAL 217 (303)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHH
T ss_pred CCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHH
Confidence 543 3445678899999999998753211111122333334455565 443 5677655 45566788899999
Q ss_pred HcCccccc-eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 155 EIGLMNKG-CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 155 ~~g~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+.|+..++ ...++-|.... .....+ ..-.+. ......++.|+.++...++.
T Consensus 218 ~~G~~vP~di~vig~D~~~~-~~~~~p-------~lttv~------------~~~~~~g~~av~~L~~~i~~ 269 (303)
T 3kke_A 218 RLGLRVPEDLSIVGINTTWV-SDTVYP-------ALTTVR------------LPLQRLGEVAADVLMEHLGG 269 (303)
T ss_dssp HTTCCTTTTCEEEEESCCHH-HHHSSS-------CCEEEE------------CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCCCceEEEEEcChhH-hhcCCC-------CeeEEe------------cCHHHHHHHHHHHHHHHhcC
Confidence 99987554 33444443211 111110 111111 12456788888888877753
No 127
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=96.07 E-value=0.021 Score=59.03 Aligned_cols=128 Identities=11% Similarity=0.112 Sum_probs=84.2
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCC------CCCCCeEEEeecCchhhHHHHHHHHHHc--CCe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLT------SIRSPYFFRGALNDSSQVGAITAIIKAF--GWR 77 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls------~~~~~~~fr~~p~~~~~~~ai~~~l~~~--gw~ 77 (783)
+++|++||.... .....+.. ...++|+|......+... ....+++..+. +...+...+++|... |.+
T Consensus 67 ~~~vDgII~~~~-~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~ 141 (302)
T 2qh8_A 67 GENPDVLVGIAT-PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVK 141 (302)
T ss_dssp HTCCSEEEEESH-HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCC
T ss_pred hCCCCEEEECCh-HHHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCc
Confidence 468888886532 23333333 267999998775444321 11134555554 223356677888776 999
Q ss_pred EEEEEEEeCC-cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 78 EAVPIYVDNQ-YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 78 ~vaii~~d~~-~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
++++|+.... .++...+.+++++++.|+++...... +..+....+.++. .++|+|++....
T Consensus 142 ~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~-~~~dai~~~~D~ 203 (302)
T 2qh8_A 142 SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIA-EKSDVIYALIDN 203 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHG-GGCSEEEECSCH
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHh-ccCCEEEECCcH
Confidence 9999996543 35677889999999999988655432 2346777788886 478998886544
No 128
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.07 E-value=0.011 Score=52.16 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=59.3
Q ss_pred HHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcc-c-ccccccchhhhHHHHHHHHHHHHHHhhhhhhheee
Q 036525 429 FIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILTQSYTASLTSLLT 506 (783)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt 506 (783)
+++.+.+++.+|+..+ ++...++.+++|+++.++...| + ..|.+..+|++.++|+++++.+.+...+.+++.++
T Consensus 40 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~ 115 (122)
T 2ih3_C 40 LLAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 115 (122)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677776432 2334579999999999999776 3 36899999999999999999999999999998875
Q ss_pred c
Q 036525 507 V 507 (783)
Q Consensus 507 ~ 507 (783)
.
T Consensus 116 ~ 116 (122)
T 2ih3_C 116 G 116 (122)
T ss_dssp H
T ss_pred H
Confidence 4
No 129
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=96.07 E-value=0.057 Score=54.75 Aligned_cols=149 Identities=12% Similarity=0.065 Sum_probs=95.3
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||=..... ......+.+.++|+|......+. .. +..+..++..-+..++++|...|.++++++...
T Consensus 61 ~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 132 (276)
T 3jy6_A 61 SRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMDA---CP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSE 132 (276)
T ss_dssp TTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCTT---CS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred hCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccCC---CC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 45787776433333 45555667789999998643321 11 234566778888899999999999999999976
Q ss_pred CC-c--CCcchHHHHHHHhhCCceEeEEEecCCC--CChhHHHHHHHHHhc-cCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 86 NQ-Y--GEAMIPSLTDALHAIDTRVPYRSVISPL--ATDDQIEKELYKLFT-MQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 86 ~~-~--G~~~~~~~~~~l~~~g~~v~~~~~i~~~--~~~~d~~~~l~~l~~-~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.. + .+...++|.+++++.+. + .+... .....+......+.. .++++|+. .+...+..+++.+++.|+.
T Consensus 133 ~~~~~~~~~R~~gf~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 133 LELSRTRQERYRGILAAAQDVDV-L----EVSESSYNHSEVHQRLTQLITQNDQKTVAFA-LKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp STTCHHHHHHHHHHHTTCSEEEE-E----EECSSSCCHHHHHHHHHHHHHSSSSCEEEEE-SSHHHHHHHSHHHHHSSSC
T ss_pred CCCCchHHHHHHHHHHHHHhCCc-E----EEeccccCCcHHHHHHHHHHhcCCCCcEEEE-eCcHHHHHHHHHHHHcCCC
Confidence 54 2 25567788888887753 2 12211 112234444444443 45677654 5667788899999999997
Q ss_pred ccceEEEEe
Q 036525 160 NKGCVWIMT 168 (783)
Q Consensus 160 ~~~~~~i~~ 168 (783)
.++-+-|++
T Consensus 207 vP~di~vig 215 (276)
T 3jy6_A 207 DNQTVTATG 215 (276)
T ss_dssp CSSSEEEEE
T ss_pred CCCcEEEEE
Confidence 665444443
No 130
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=95.99 E-value=0.035 Score=58.85 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=97.8
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||=..... .......+...++|+|...... . .+....+..++..-+..++++|...|.+++++|...
T Consensus 124 ~~~vdGiI~~~~~~-~~~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~ 196 (355)
T 3e3m_A 124 RRRPEAMVLSYDGH-TEQTIRLLQRASIPIVEIWEKP---A---HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEK 196 (355)
T ss_dssp HTCCSEEEEECSCC-CHHHHHHHHHCCSCEEEESSCC---S---SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred hCCCCEEEEeCCCC-CHHHHHHHHhCCCCEEEECCcc---C---CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccC
Confidence 34677765322221 1234445667899999874221 1 122345667777788888999988999999999975
Q ss_pred CCc---CCcchHHHHHHHhhCCceEeEEEecCC-CCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 86 NQY---GEAMIPSLTDALHAIDTRVPYRSVISP-LATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 86 ~~~---G~~~~~~~~~~l~~~g~~v~~~~~i~~-~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
... .....++|.+++++.|+.+.....+.. ..+..+-...+.++.+ ..+++|+. .+...+..+++.+++.|+.
T Consensus 197 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~ 275 (355)
T 3e3m_A 197 DDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-VSDMPAFGLLSRLKSIGVA 275 (355)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCC
T ss_pred cccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCC
Confidence 432 456789999999999987652222221 2222233344444443 36777664 5666778899999999987
Q ss_pred ccceEEEEe
Q 036525 160 NKGCVWIMT 168 (783)
Q Consensus 160 ~~~~~~i~~ 168 (783)
.++-+-|++
T Consensus 276 vP~disvig 284 (355)
T 3e3m_A 276 VPEQVSVVG 284 (355)
T ss_dssp TTTTCEEEC
T ss_pred CCCceEEEE
Confidence 665444443
No 131
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.97 E-value=0.051 Score=58.98 Aligned_cols=159 Identities=9% Similarity=-0.014 Sum_probs=99.1
Q ss_pred ccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEE
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPI 82 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii 82 (783)
.+.+.+|++||-.. ........+.+.++|+|......+... ..+.+-.+..++..-+..++++|...|.+++++|
T Consensus 71 ~l~~~~vDGiIi~~---~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i 145 (412)
T 4fe7_A 71 KIKDWLGDGVIADF---DDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFY 145 (412)
T ss_dssp ----CCCSEEEEET---TCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHhcCCCCEEEEec---CChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34456788887522 233445566788999999875433211 1133455677788888889999999999999999
Q ss_pred EEeCCc----CCcchHHHHHHHhhCCceEeEEEecCCCC-ChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHH
Q 036525 83 YVDNQY----GEAMIPSLTDALHAIDTRVPYRSVISPLA-TDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANE 155 (783)
Q Consensus 83 ~~d~~~----G~~~~~~~~~~l~~~g~~v~~~~~i~~~~-~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~ 155 (783)
...... .+...++|.+++++.|+............ +..+-...+.++.+ .++++|+. .+...+..+++.+++
T Consensus 146 ~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~-~nD~~A~g~~~al~~ 224 (412)
T 4fe7_A 146 GLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIA-VTDARARHILQVCEH 224 (412)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEEE-SSHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEEE-EecHHHHHHHHHHHH
Confidence 865443 45678899999999997653222111111 11222334444332 35677654 566678888999999
Q ss_pred cCccccceEEEE
Q 036525 156 IGLMNKGCVWIM 167 (783)
Q Consensus 156 ~g~~~~~~~~i~ 167 (783)
.|+..++-+-|+
T Consensus 225 ~G~~vP~disvi 236 (412)
T 4fe7_A 225 LHIPVPEKLCVI 236 (412)
T ss_dssp HTCCTTTTSEEE
T ss_pred cCCCCCceEEEE
Confidence 998655443333
No 132
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=95.93 E-value=0.038 Score=55.26 Aligned_cols=148 Identities=11% Similarity=-0.025 Sum_probs=94.2
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-...+... .+...+.++|+|...... +.+..+..++...+..++++|...|.++++++...
T Consensus 56 ~~~vdgiI~~~~~~~~---~~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 124 (255)
T 1byk_A 56 RRNIDGVVLFGFTGIT---EEMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVP 124 (255)
T ss_dssp TTTCCEEEEECCTTCC---TTTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred hcCCCEEEEecCcccc---HHHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 4578777632222111 123445689998875421 12345667777788889999988899999999854
Q ss_pred ---CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 86 ---NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 86 ---~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
....+...++|.+++++.|+.+.. +..+.+..+-...+.++.+.++++|++ .+...+..+++.+++.|+ .+
T Consensus 125 ~~~~~~~~~R~~gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~d 198 (255)
T 1byk_A 125 HSDVTTGKRRHEAYLAFCKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DT 198 (255)
T ss_dssp TTSTTTTHHHHHHHHHHHHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CS
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--Cc
Confidence 234566788999999999986532 222223223333444554456887665 455678889999999997 44
Q ss_pred eEEEEeCC
Q 036525 163 CVWIMTDG 170 (783)
Q Consensus 163 ~~~i~~~~ 170 (783)
...++-|.
T Consensus 199 i~vig~d~ 206 (255)
T 1byk_A 199 LQLASVGN 206 (255)
T ss_dssp CEEEEECC
T ss_pred EEEEEeCC
Confidence 44555543
No 133
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=95.89 E-value=0.02 Score=60.35 Aligned_cols=151 Identities=9% Similarity=0.041 Sum_probs=91.1
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEee-ccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH-cC-CeEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSF-SATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA-FG-WREAVPI 82 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~-~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-~g-w~~vaii 82 (783)
+.+|.+||-+..+.........+.+.++|+|.. ....+.......+.+..+..++...+..++++|.. +| .+++++|
T Consensus 102 ~~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i 181 (342)
T 1jx6_A 102 KSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVL 181 (342)
T ss_dssp HTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEE
Confidence 347888876544432233344455678999877 32222110001233445667777888888999877 47 9999999
Q ss_pred EEeCC-cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 83 YVDNQ-YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 83 ~~d~~-~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
..... ......++|.+++++.|+ +.....+..+.+..+-...+.++.+ .++++|+. .+...+..+++++++.|+
T Consensus 182 ~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 182 YFSEGYISDVRGDTFIHQVNRDNN-FELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 258 (342)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEECCCSSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred EcCCcchhhHHHHHHHHHHHhCCC-cEEEEEecCCCCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC
Confidence 75433 345567889999998886 2222222222233333344555443 34677664 455668888999999997
No 134
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.84 E-value=0.019 Score=51.85 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeec
Q 036525 430 IFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTV 507 (783)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~ 507 (783)
++.+.+++.+++..+ +.....+.+++||++.++...| ...|.+..+|++.++|+++++.+.+...+.+.+.+..
T Consensus 20 ~~~a~~~~~~e~~~~----~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 20 LAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHHTTSSCT----TCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHHhcCCC----CcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665432 2334578999999999998776 3468899999999999999999999999999888743
No 135
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=95.82 E-value=0.035 Score=58.65 Aligned_cols=154 Identities=10% Similarity=0.001 Sum_probs=93.3
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||-....... .....+...++|+|......+. .+.+..+..++..-+..++++|...|.+++++|...
T Consensus 120 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~-----~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 193 (348)
T 3bil_A 120 SHGVDGIICVPNEECA-NQLEDLQKQGMPVVLVDRELPG-----DSTIPTATSNPQPGIAAAVELLAHNNALPIGYLSGP 193 (348)
T ss_dssp HTTCSCEEECCCGGGH-HHHHHHHHC-CCEEEESSCCSC-----C-CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred hCCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEEcccCCC-----CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 3578877753333222 3334455679999988653221 012223556666777888899988899999999854
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC-ceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFIVHKLPSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~-~dvii~~~~~~~~~~~~~~a~~~g~~~~~ 162 (783)
.. ..+...++|.+++++.|+..... +..+.+..+-...+.++.+.. + + |++.+...+..+++++++.|+..++
T Consensus 194 ~~~~~~~~R~~Gf~~al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-a-i~~~nD~~A~g~~~al~~~G~~vP~ 269 (348)
T 3bil_A 194 MDTSTGRERLEDFKAACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK-T-LFAGDSMMTIGVIEACHKAGLVIGK 269 (348)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-E-EEESSHHHHHHHHHHHHHTTCCBTT
T ss_pred CCCccHHHHHHHHHHHHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC-E-EEEcChHHHHHHHHHHHHcCCCCCC
Confidence 32 34566889999999998733221 121222233334455554433 5 4 4456667788899999999987554
Q ss_pred eE-EEEeC
Q 036525 163 CV-WIMTD 169 (783)
Q Consensus 163 ~~-~i~~~ 169 (783)
-+ .++-|
T Consensus 270 disvvG~D 277 (348)
T 3bil_A 270 DVSVIGFD 277 (348)
T ss_dssp TBEEEEES
T ss_pred CeEEEEeC
Confidence 33 44444
No 136
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=95.74 E-value=0.027 Score=58.04 Aligned_cols=202 Identities=11% Similarity=0.019 Sum_probs=115.2
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHH-HcCCe-----EE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIK-AFGWR-----EA 79 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~~gw~-----~v 79 (783)
.+|.+|| -|..+.........+.+.++|+|......+.......+.+..+..++...+..++++|. .+|-+ ++
T Consensus 56 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i 135 (306)
T 8abp_A 56 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKES 135 (306)
T ss_dssp TTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccce
Confidence 4788776 45445455555666778899999987432222111111334456667777777777774 43443 88
Q ss_pred EEEE-EeC--CcCCcchHHHHHHHhhCCc---eEeEEEecCCCCChhHHHHHHHHHhccC--ceE-EEEEcChhhHHHHH
Q 036525 80 VPIY-VDN--QYGEAMIPSLTDALHAIDT---RVPYRSVISPLATDDQIEKELYKLFTMQ--TRV-FIVHKLPSLGSRIF 150 (783)
Q Consensus 80 aii~-~d~--~~G~~~~~~~~~~l~~~g~---~v~~~~~i~~~~~~~d~~~~l~~l~~~~--~dv-ii~~~~~~~~~~~~ 150 (783)
+++. ... ...+...+.|.+++++.|. +++.... ...+..+-...+.++.+.. +++ +|++.+...+..++
T Consensus 136 ~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~ 213 (306)
T 8abp_A 136 AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT--KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 213 (306)
T ss_dssp EEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC--SSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHH
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeecc--CCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHH
Confidence 8886 332 3345667889999999874 2433221 2223334445566665554 455 45566777788899
Q ss_pred HHHHHcCccccceEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 151 EKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
+.+++.|+...+...++.|... ....+.+ ....+.+.... ......++.|+.++.+.+++
T Consensus 214 ~al~~~g~~v~di~vvG~D~~~-~~~~~~~---~~~~~~~ttv~-----------~~~~~~G~~a~~~l~~~i~~ 273 (306)
T 8abp_A 214 RATEGQGFKAADIIGIGINGVD-AVSELSK---AQATGFYGSLL-----------PSPDVHGYKSSEMLYNWVAK 273 (306)
T ss_dssp HHHHHTTCCGGGEEEEEESSGG-GHHHHTS---SSCCSEEEEEE-----------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCceEEEEeCcHH-HHHHHHc---CCCcceEEEec-----------CCHHHHHHHHHHHHHHHHhc
Confidence 9999999865334445545433 2111110 00011222211 12356788899988888854
No 137
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.64 E-value=0.021 Score=52.50 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=59.7
Q ss_pred HHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcc-c-ccccccchhhhHHHHHHHHHHHHHHhhhhhhheee
Q 036525 429 FIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILTQSYTASLTSLLT 506 (783)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt 506 (783)
+++.+++++.+|+..+ ++...++.+++|+++.++...| + ..|.+..+|++.++|+++++.+.+...+.+++.++
T Consensus 63 i~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~ 138 (155)
T 2a9h_A 63 LLAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFV 138 (155)
T ss_dssp HHHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677776542 2233478999999999999776 3 36889999999999999999999999999998886
Q ss_pred cc
Q 036525 507 VQ 508 (783)
Q Consensus 507 ~~ 508 (783)
..
T Consensus 139 ~~ 140 (155)
T 2a9h_A 139 GR 140 (155)
T ss_dssp SC
T ss_pred HH
Confidence 54
No 138
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=95.63 E-value=0.043 Score=57.67 Aligned_cols=152 Identities=11% Similarity=0.005 Sum_probs=94.6
Q ss_pred cCCeEEEEc-cCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLG-PEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIG-p~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+.+|.+||= |..... .....+...++|+|......+ .+.. .+..++..-+..++++|...|.++++++..
T Consensus 116 ~~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~------~~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 186 (339)
T 3h5o_A 116 QHRPDGVLITGLSHAE--PFERILSQHALPVVYMMDLAD------DGRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGA 186 (339)
T ss_dssp TTCCSEEEEECSCCCT--THHHHHHHTTCCEEEEESCCS------SSCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cCCCCEEEEeCCCCCH--HHHHHHhcCCCCEEEEeecCC------CCCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 357777652 222211 334445678999998753211 1222 566777788888999998899999999986
Q ss_pred eC-CcCCcchHHHHHHHhhCCceEe-EEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 85 DN-QYGEAMIPSLTDALHAIDTRVP-YRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 85 d~-~~G~~~~~~~~~~l~~~g~~v~-~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
.. .......++|.+++++.|+... .........+..+-...+.++.+ ..+++|+. .+...+..+++.+++.|+..
T Consensus 187 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~v 265 (339)
T 3h5o_A 187 QLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAV 265 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCT
T ss_pred CCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCC
Confidence 53 3345567889999999987321 11111222222333344455443 36787764 56667888999999999976
Q ss_pred cceEEEE
Q 036525 161 KGCVWIM 167 (783)
Q Consensus 161 ~~~~~i~ 167 (783)
++-+-|+
T Consensus 266 P~disvv 272 (339)
T 3h5o_A 266 PERLAIA 272 (339)
T ss_dssp TTTCEEE
T ss_pred CCCEEEE
Confidence 6544444
No 139
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=95.58 E-value=0.01 Score=60.99 Aligned_cols=156 Identities=10% Similarity=0.107 Sum_probs=97.2
Q ss_pred cCCeEEEEc-cCCch---hHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEE
Q 036525 6 NAQVRVMLG-PEDSM---PTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVP 81 (783)
Q Consensus 6 ~~~V~aiIG-p~~S~---~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vai 81 (783)
+.+|.+||= |..+. ........+.+.++|+|......+.. .+..+..++...+..++++|...|.+++++
T Consensus 69 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~------~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~ 142 (298)
T 3tb6_A 69 SQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL------AAPSFTLDDVKGGMMAAEHLLSLGHTHMMG 142 (298)
T ss_dssp HTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC------SSCEEEECHHHHHHHHHHHHHHTTCCSEEE
T ss_pred HCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCC------CCCEEEeCcHHHHHHHHHHHHHCCCCcEEE
Confidence 457877764 33322 34455555677899999986543221 122356677788889999998899999999
Q ss_pred EEEeCC-cCCcchHHHHHHHhhCCceEeEEEecCCCCCh--hHHHHHHHHHhcc--C--ceEEEEEcChhhHHHHHHHHH
Q 036525 82 IYVDNQ-YGEAMIPSLTDALHAIDTRVPYRSVISPLATD--DQIEKELYKLFTM--Q--TRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 82 i~~d~~-~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~--~d~~~~l~~l~~~--~--~dvii~~~~~~~~~~~~~~a~ 154 (783)
+..... ......+.|.+++++.|+.+.....+...... ......+.++.+. + +++|+. .+...+..+++.++
T Consensus 143 i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~ 221 (298)
T 3tb6_A 143 IFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILC-YNDEIALKVIDMLR 221 (298)
T ss_dssp EEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEEC-SSHHHHHHHHHHHH
T ss_pred EcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEE-eCcHHHHHHHHHHH
Confidence 985433 34566788999999998775322111111111 0112334444333 3 677654 45667888999999
Q ss_pred HcCccccceEEEEe
Q 036525 155 EIGLMNKGCVWIMT 168 (783)
Q Consensus 155 ~~g~~~~~~~~i~~ 168 (783)
+.|+..++-+-|++
T Consensus 222 ~~g~~vP~di~vvg 235 (298)
T 3tb6_A 222 EMDLKVPEDMSIVG 235 (298)
T ss_dssp HTTCCTTTTCEEEC
T ss_pred HcCCCCCCceEEEe
Confidence 99987655444443
No 140
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=95.55 E-value=0.12 Score=52.18 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=93.4
Q ss_pred cCCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHc--CCeEEEEE
Q 036525 6 NAQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAF--GWREAVPI 82 (783)
Q Consensus 6 ~~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~--gw~~vaii 82 (783)
+.+|.+|| -|..+.........+.+.++|+|......+. .+....+..++..-+..++++|... |.+++++|
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i 129 (271)
T 2dri_A 55 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK-----GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 129 (271)
T ss_dssp TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-----SCCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCCC-----CceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 45788876 3433332223344455679999987643221 1112235566777778888888665 56899999
Q ss_pred EEeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 83 YVDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 83 ~~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
..... ..+...++|++++++.|+++..... .+.+...-...+.++.+ ..+++|+ +.+...+..+++.+++.|+
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 130 QGIAGTSAARERGEGFQQAVAAHKFNVLASQP--ADFDRIKGLNVMQNLLTAHPDVQAVF-AQNDEMALGALRALQTAGK 206 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred ECCCCCccHhHHHHHHHHHHhcCCCEEEEecC--CCCCHHHHHHHHHHHHHhCCCccEEE-ECCCcHHHHHHHHHHHcCC
Confidence 85432 2355678899999999987654321 11222232334444433 3467654 4556678889999999997
Q ss_pred cccceEEEEeCC
Q 036525 159 MNKGCVWIMTDG 170 (783)
Q Consensus 159 ~~~~~~~i~~~~ 170 (783)
.+...++-|.
T Consensus 207 --~dv~vvGfD~ 216 (271)
T 2dri_A 207 --SDVMVVGFDG 216 (271)
T ss_dssp --CSCEEEEEEC
T ss_pred --CCcEEEEecC
Confidence 4444555443
No 141
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=95.29 E-value=0.034 Score=57.40 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=112.4
Q ss_pred cccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEE
Q 036525 4 LNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIY 83 (783)
Q Consensus 4 i~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~ 83 (783)
+.+.+|.+||=....... .....+...++|+|...... .. +.+..+..++..-+..++++|...|.++++++.
T Consensus 79 l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 151 (305)
T 3huu_A 79 IQSKSVDGFILLYSLKDD-PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQ 151 (305)
T ss_dssp HHTTCCSEEEESSCBTTC-HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHhCCCCEEEEeCCcCCc-HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 344578887632222122 34445567899999976432 11 223346677777888899999889999999998
Q ss_pred EeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHH-h--ccCceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 84 VDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKL-F--TMQTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 84 ~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l-~--~~~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
.... ..+...++|.+++++.|+.+.. .+. . ....-...+.++ . ..++++|+. .+...+..+++.+++.|+
T Consensus 152 ~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~-~-~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 226 (305)
T 3huu_A 152 ESGHYAVTEDRSVGFKQYCDDVKISNDC--VVI-K-SMNDLRDFIKQYCIDASHMPSVIIT-SDVMLNMQLLNVLYEYQL 226 (305)
T ss_dssp ESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEE-C-SHHHHHHHC--------CCCSEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CCcccchhHHHHHHHHHHHHHcCCCccc--EEe-c-CcHHHHHHHHHhhhcCCCCCCEEEE-CChHHHHHHHHHHHHcCC
Confidence 6544 3456788999999999987754 221 1 111122334444 3 246777664 566678889999999998
Q ss_pred cccc-eEEEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Q 036525 159 MNKG-CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEK 225 (783)
Q Consensus 159 ~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~Al~~ 225 (783)
..++ ...++-|... ......+ ..-.+.. .....++.|+.++...++.
T Consensus 227 ~vP~di~vig~D~~~-~~~~~~p-------~lttv~~------------~~~~~g~~av~~l~~~i~~ 274 (305)
T 3huu_A 227 RIPEDIQTATFNTSF-LTENATP-------SQTSVNI------------NPDVLGFTAGNTIIDVLRN 274 (305)
T ss_dssp CTTTTCEEEEESCSH-HHHTSSS-------CCEEEEC------------CHHHHHHHHHHHHHHHHCC
T ss_pred CCCcceEEEEECCcc-hhhhcCC-------cceEEec------------CHHHHHHHHHHHHHHHhhC
Confidence 7554 3344444322 1111111 1111211 2456788888888877753
No 142
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=95.24 E-value=0.12 Score=53.67 Aligned_cols=154 Identities=10% Similarity=0.102 Sum_probs=87.7
Q ss_pred cCCeEEEEccCCchhHHHHHcccCC-CCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHH----HHHHHHcCC-eEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNK-SQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAI----TAIIKAFGW-REA 79 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~-~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai----~~~l~~~gw-~~v 79 (783)
+.++.+||..... ...++..++.+ .++|++......+ . .+.+-.... +..++..+ +.++.+.|. ++|
T Consensus 60 ~~~~dgIi~~~~~-~~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~I 132 (318)
T 2fqx_A 60 DENMGLVVACGSF-LVEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAV 132 (318)
T ss_dssp HTTCSEEEEESTT-THHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCEEEECChh-HHHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEE
Confidence 4578888864322 12234445544 3899988754221 0 123322333 34444444 466767787 899
Q ss_pred EEEEEe-CCcCCcchHHHHHHHhhCCceEeEEEecCCCCCh-hHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcC
Q 036525 80 VPIYVD-NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATD-DQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 80 aii~~d-~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~-~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
++|... ....+.....|.+.+++.|..+.....+.-+..+ ..-.....++.+.++|+|+.. ....+.-+++++++.|
T Consensus 133 g~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g 211 (318)
T 2fqx_A 133 GFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRR 211 (318)
T ss_dssp EEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHH
T ss_pred EEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhh
Confidence 999743 2334556788999999888755433333212111 222234455555689987654 4455777888999988
Q ss_pred ccccceEEEEe
Q 036525 158 LMNKGCVWIMT 168 (783)
Q Consensus 158 ~~~~~~~~i~~ 168 (783)
+. +.-+++++
T Consensus 212 ~~-P~dv~viG 221 (318)
T 2fqx_A 212 LN-GQDVWVIG 221 (318)
T ss_dssp HT-TCCCEEEE
T ss_pred hc-cCCcEEEE
Confidence 86 44444443
No 143
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.20 E-value=0.039 Score=49.57 Aligned_cols=56 Identities=9% Similarity=0.246 Sum_probs=49.0
Q ss_pred CccchhHHHHHHHhhhcc-c-ccccccchhhhHHHHHHHHHHHHHHhhhhhhheeecc
Q 036525 453 HQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQ 508 (783)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~ 508 (783)
.++.+++|+++.++...| + -.|.+..+|++.++|+++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998766 3 3689999999999999999999999999999888643
No 144
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=95.14 E-value=0.033 Score=56.46 Aligned_cols=146 Identities=8% Similarity=0.023 Sum_probs=87.1
Q ss_pred cCCeEEEEccCCchhHHHHHc-ccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQ-PGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~-~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+.+|.+||-...+ ..... .+.+.++|+|......+.. . .+..++...+..++++|...|.++++++..
T Consensus 62 ~~~~dgiIi~~~~---~~~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 130 (277)
T 3e61_A 62 SHNCTGMISTAFN---ENIIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHE 130 (277)
T ss_dssp HTTCSEEEECGGG---HHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hCCCCEEEEecCC---hHHHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 3578777643222 22334 5567799999987543211 1 566777788888999998899999999985
Q ss_pred eC--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh-ccCceEEEEEcChhhHHHHHHHHHHcCcccc
Q 036525 85 DN--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFIVHKLPSLGSRIFEKANEIGLMNK 161 (783)
Q Consensus 85 d~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~-~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~ 161 (783)
.. .......++|.+++++.|+.+.. . +..+.+..+-... +. ..++++|+. .+...+..+++.+++.|+..+
T Consensus 131 ~~~~~~~~~R~~gf~~~l~~~~~~~~~-~-~~~~~~~~~~~~~---l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 204 (277)
T 3e61_A 131 NLLIDAFHQRVQGIKYILDQQRIDYKM-L-EATLLDNDKKFID---LIKELSIDSIIC-SNDLLAINVLGIVQRYHFKVP 204 (277)
T ss_dssp CTTSHHHHHHHHHHHHHHHC---CEEE-E-EGGGGGSHHHHHH---HHHHHTCCEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCccc-e-ecCCCCHHHHHHH---hhcCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 43 34456788999999999987765 2 2111111121122 33 357787765 456678889999999998755
Q ss_pred ceEEEEe
Q 036525 162 GCVWIMT 168 (783)
Q Consensus 162 ~~~~i~~ 168 (783)
+-+-|++
T Consensus 205 ~di~vig 211 (277)
T 3e61_A 205 AEIQIIG 211 (277)
T ss_dssp TTCEEEC
T ss_pred CceEEEe
Confidence 5444443
No 145
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.12 E-value=0.077 Score=52.69 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCC-------CChhHHHHHHHH-H-hccCc
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPL-------ATDDQIEKELYK-L-FTMQT 134 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~-------~~~~d~~~~l~~-l-~~~~~ 134 (783)
+.++++.++..|.++|+++.. |.....+.+++.+++.|++|+........ .+...+...+.+ + ...++
T Consensus 105 ~~A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCC
Confidence 677888888999999999974 88888899999999999998765543211 123456666777 6 66788
Q ss_pred eEEEEEcChhhHHHHHH
Q 036525 135 RVFIVHKLPSLGSRIFE 151 (783)
Q Consensus 135 dvii~~~~~~~~~~~~~ 151 (783)
|+||+.|..-....++.
T Consensus 182 daivL~CT~l~~l~~i~ 198 (240)
T 3ixl_A 182 DGILLSSGGLLTLDAIP 198 (240)
T ss_dssp SEEEEECTTSCCTTHHH
T ss_pred CEEEEeCCCCchhhhHH
Confidence 88888776543333333
No 146
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=94.82 E-value=0.062 Score=54.57 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=94.6
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccC-CCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSAT-SPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV 84 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~-s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~ 84 (783)
+.+|.+||=.. .....+...++|+|..... .+ .+.+ .+..++..-+..++++|. .|.++++++..
T Consensus 65 ~~~vdgiIi~~------~~~~~~~~~~iPvV~~~~~~~~------~~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~ 130 (277)
T 3hs3_A 65 NNNVDGIITSA------FTIPPNFHLNTPLVMYDSANIN------DDIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHW 130 (277)
T ss_dssp HTTCSEEEEEC------CCCCTTCCCSSCEEEESCCCCC------SSSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEES
T ss_pred hCCCCEEEEcc------hHHHHHHhCCCCEEEEcccccC------CCCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeC
Confidence 34677776322 1223456779999987643 21 1234 677778888888888888 99999999985
Q ss_pred e--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHHcCccc
Q 036525 85 D--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 85 d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~~g~~~ 160 (783)
. ....+...++|.+++++.|+++... ... +.. + ...+.++.+ .++++|+. .+...+..+++.+++.|+..
T Consensus 131 ~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~-~~~--~-~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~v 204 (277)
T 3hs3_A 131 PLSLPTIRERIEAMTAEASKLKIDYLLE-ETP-ENN--P-YISAQSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKI 204 (277)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECC-SSC--H-HHHHHHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCT
T ss_pred CCcCccHHHHHHHHHHHHHHCCCCCCCC-Ccc-CCc--h-HHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCC
Confidence 4 3344567889999999999988655 332 222 2 344444443 46777654 55667888999999999975
Q ss_pred cceEEEE
Q 036525 161 KGCVWIM 167 (783)
Q Consensus 161 ~~~~~i~ 167 (783)
++-+-|+
T Consensus 205 P~di~vi 211 (277)
T 3hs3_A 205 PDDFQLV 211 (277)
T ss_dssp TTTCEEE
T ss_pred CCceEEE
Confidence 5544444
No 147
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=94.67 E-value=0.25 Score=50.35 Aligned_cols=161 Identities=11% Similarity=0.014 Sum_probs=95.0
Q ss_pred cCCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCC-C-CCCCeEEEeecCchhhHHHHHHHHHHc-C--CeEE
Q 036525 6 NAQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLT-S-IRSPYFFRGALNDSSQVGAITAIIKAF-G--WREA 79 (783)
Q Consensus 6 ~~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls-~-~~~~~~fr~~p~~~~~~~ai~~~l~~~-g--w~~v 79 (783)
..+|.+|| -|..+.........+.+.++|+|......+... . ...++.-.+..++..-+..++++|... | .+++
T Consensus 57 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I 136 (288)
T 1gud_A 57 NKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEV 136 (288)
T ss_dssp TSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEE
Confidence 35788876 343332222233344567999998764321100 0 000110345667777788888988766 8 8999
Q ss_pred EEEEEeCCc--CCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHH
Q 036525 80 VPIYVDNQY--GEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 80 aii~~d~~~--G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~ 154 (783)
++|...... .+...++|++++++. |+++..... .+.+..+-...+.++.+. .+++|+. .+...+.-+++.++
T Consensus 137 ~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~ 213 (288)
T 1gud_A 137 AIIEGKAGNASGEARRNGATEAFKKASQIKLVASQP--ADWDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQAVA 213 (288)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHH
T ss_pred EEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEeec--CCccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHHHH
Confidence 999854332 345678899999988 887654321 122222333344454433 4676554 45567888999999
Q ss_pred HcCccccceEEEEeCC
Q 036525 155 EIGLMNKGCVWIMTDG 170 (783)
Q Consensus 155 ~~g~~~~~~~~i~~~~ 170 (783)
+.|+. .+...++-|.
T Consensus 214 ~~G~~-~dv~vvGfD~ 228 (288)
T 1gud_A 214 NAGKT-GKVLVVGTDG 228 (288)
T ss_dssp HTTCT-TTSEEEEESC
T ss_pred hcCCC-CCeEEEEeCC
Confidence 99984 4455555554
No 148
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=94.64 E-value=0.012 Score=60.87 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=94.3
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||=....... ....+...++|+|......+.. +.+..+..++..-+..++++|...|.++++++...
T Consensus 68 ~~~vdGiIi~~~~~~~--~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 140 (301)
T 3miz_A 68 SHRIDGVLYVTMYRRI--VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLN 140 (301)
T ss_dssp HTTCSEEEEEEEEEEE--CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECC
T ss_pred hCCCCEEEEecCCccH--HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 3467776632112111 4455677899999876533211 02234567777888889999988999999999854
Q ss_pred CC--cCCcchHHHHHHHhhCCceEeEEEec-----CCCCChhHH-HHHHHHHhc--cCceEEEEEcChhhHHHHHHHHHH
Q 036525 86 NQ--YGEAMIPSLTDALHAIDTRVPYRSVI-----SPLATDDQI-EKELYKLFT--MQTRVFIVHKLPSLGSRIFEKANE 155 (783)
Q Consensus 86 ~~--~G~~~~~~~~~~l~~~g~~v~~~~~i-----~~~~~~~d~-~~~l~~l~~--~~~dvii~~~~~~~~~~~~~~a~~ 155 (783)
.. ..+...++|.+++++.|+.+.....+ ..+... .+ ...+.++.+ ..+++|+. .+...+..+++.+++
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~ 218 (301)
T 3miz_A 141 PILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAEN-NYVFAAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMA 218 (301)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCE-ECHHHHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccc-cHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHH
Confidence 43 34567889999999998765322211 111111 11 134444443 35777764 455678889999999
Q ss_pred cCccccceEEEE
Q 036525 156 IGLMNKGCVWIM 167 (783)
Q Consensus 156 ~g~~~~~~~~i~ 167 (783)
.|+..++-+-|+
T Consensus 219 ~g~~vP~di~vi 230 (301)
T 3miz_A 219 LGLRIPQDVSIV 230 (301)
T ss_dssp TTCCHHHHCEEE
T ss_pred cCCCCCCCeeEE
Confidence 998755444343
No 149
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=94.50 E-value=0.22 Score=52.48 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=91.0
Q ss_pred cCCeEEEE--ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEE
Q 036525 6 NAQVRVML--GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIY 83 (783)
Q Consensus 6 ~~~V~aiI--Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~ 83 (783)
+.+|.+|| +|..... .....+...++|+|...... ....+ .+..++..-+..++++|...|.+++++|.
T Consensus 116 ~~~vdGiIi~~~~~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~ 186 (349)
T 1jye_A 116 AQRVSGLIINYPLDDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLA 186 (349)
T ss_dssp TTTCSCEEEESCCCHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HCCCCEEEEecCCCChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 34677665 4543322 22223445789999875321 11223 34556666777788888888999999998
Q ss_pred EeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 84 VDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 84 ~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.... ..+...++|.+++++.|+++..... .+.+..+-...+.++.+. .+++|+. .+...+..+++.+++.|+.
T Consensus 187 g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~ 263 (349)
T 1jye_A 187 GPLSSVSARLRLAGWHKYLTRNQIQPIAERE--GDWSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLR 263 (349)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTCCCSEEEE--CCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCCcccccc--CCCChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCC
Confidence 5433 2355678899999999986543221 112222222334444333 5777765 4556688899999999987
Q ss_pred ccceEEEE
Q 036525 160 NKGCVWIM 167 (783)
Q Consensus 160 ~~~~~~i~ 167 (783)
.++-+-|+
T Consensus 264 vP~disvv 271 (349)
T 1jye_A 264 VGADISVV 271 (349)
T ss_dssp BTTTBEEE
T ss_pred CCCcEEEE
Confidence 65544444
No 150
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.86 E-value=0.12 Score=41.57 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=45.4
Q ss_pred ccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhhee
Q 036525 454 QVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLL 505 (783)
Q Consensus 454 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~L 505 (783)
++.+++|+++.++...| ...|.+..+|++..++.+.++.+.....+.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999998776 34688999999999999999999999998887654
No 151
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=93.64 E-value=0.078 Score=56.35 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=110.0
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
+.+|.+||=...+... .....+...++|+|...... .....+ .+..++..-+..++++|...|.+++++|...
T Consensus 126 ~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~ 198 (366)
T 3h5t_A 126 NAAVDGVVIYSVAKGD-PHIDAIRARGLPAVIADQPA---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIR 198 (366)
T ss_dssp TCCCSCEEEESCCTTC-HHHHHHHHHTCCEEEESSCC---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEEC
T ss_pred hCCCCEEEEecCCCCh-HHHHHHHHCCCCEEEECCcc---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecc
Confidence 4467666522112112 23344556799999876422 112223 3567777788889999999999999999832
Q ss_pred -------------------CCcCCcchHHHHHHHhhCCceEeEEEec-CCCCChhHHHHHHHHHhc--cCceEEEEEcCh
Q 036525 86 -------------------NQYGEAMIPSLTDALHAIDTRVPYRSVI-SPLATDDQIEKELYKLFT--MQTRVFIVHKLP 143 (783)
Q Consensus 86 -------------------~~~G~~~~~~~~~~l~~~g~~v~~~~~i-~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~ 143 (783)
....+...++|.+++++.|+.+.....+ ....+..+-...+.++.+ ..+++||. .+.
T Consensus 199 ~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD 277 (366)
T 3h5t_A 199 LDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLC-TVD 277 (366)
T ss_dssp CSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEE-SSH
T ss_pred cccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCc
Confidence 2334566789999999999864211111 111222233334445433 35787665 455
Q ss_pred hhHHHHHHHHHHcCccccceE-EEEeCCcccccccCChhhhhcccceeEeeeCCCCCCcccccchHHHHHHHHHHHHHHH
Q 036525 144 SLGSRIFEKANEIGLMNKGCV-WIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEA 222 (783)
Q Consensus 144 ~~~~~~~~~a~~~g~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~aYDAv~~la~A 222 (783)
..+..+++.+++.|+..++-+ .++-|..... . .-+.-++.. .....++-|+.++...
T Consensus 278 ~~A~g~~~al~~~G~~vP~disvigfD~~~~~---------~-~~~lttv~q------------~~~~~G~~Av~~L~~~ 335 (366)
T 3h5t_A 278 ALAFGVLEYLKSVGKSAPADLSLTGFDGTHMA---------L-ARDLTTVIQ------------PNKLKGFKAGETLLKM 335 (366)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEEEECCHHH---------H-HTTCCEEEC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEECCChhh---------c-CCCccEEEe------------CHHHHHHHHHHHHHHH
Confidence 677789999999999755443 3443322111 0 011112211 2456788888888887
Q ss_pred HHH
Q 036525 223 VEK 225 (783)
Q Consensus 223 l~~ 225 (783)
++.
T Consensus 336 i~g 338 (366)
T 3h5t_A 336 IDK 338 (366)
T ss_dssp HTT
T ss_pred hcC
Confidence 753
No 152
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=93.50 E-value=1.4 Score=45.07 Aligned_cols=140 Identities=13% Similarity=0.074 Sum_probs=80.9
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCC-CccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHH-HHHHH-cCCeEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKS-QVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAIT-AIIKA-FGWREAVPI 82 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~-~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~-~~l~~-~gw~~vaii 82 (783)
+.+|.+||.... ....++..++.++ ++|++...... . .+.+-..... ..++..++ .++.+ .+-+++++|
T Consensus 61 ~~~vdgIi~~~~-~~~~~~~~~~~~~p~~p~v~id~~~---~---~~~~~~v~~d-~~~g~~lag~la~~l~~~~~Ig~i 132 (296)
T 2hqb_A 61 DGGVNLIFGHGH-AFAEYFSTIHNQYPDVHFVSFNGEV---K---GENITSLHFE-GYAMGYFGGMVAASMSETHKVGVI 132 (296)
T ss_dssp HTTCCEEEECST-HHHHHHHTTTTSCTTSEEEEESCCC---C---SSSEEEEEEC-CHHHHHHHHHHHHHTCSSSEEEEE
T ss_pred HCCCCEEEEcCH-hHHHHHHHHHHHCCCCEEEEEecCc---C---CCCEEEEEec-hHHHHHHHHHHHHhhccCCeEEEE
Confidence 458999997533 2334466666554 89998865321 1 1233333333 33433333 33434 366899999
Q ss_pred EEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCCh-hHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcC
Q 036525 83 YVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATD-DQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 83 ~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~-~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g 157 (783)
....... ....|++.+++.|.. .....+.-+..+ ..-.....++.+.++|+|+.. ....+.-+++++++.|
T Consensus 133 ~g~~~~~--r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 133 AAFPWQP--EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPA-GDGYHVPVVEAIKDQG 204 (296)
T ss_dssp ESCTTCH--HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECC-CTTTHHHHHHHHHHHT
T ss_pred cCcCchh--hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEEC-CCCCCHHHHHHHHHcC
Confidence 8543322 788999999998875 322222211111 222334455656689987654 4455677788999988
No 153
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=93.09 E-value=0.11 Score=43.34 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=50.1
Q ss_pred CccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeecccc
Q 036525 453 HQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQL 510 (783)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~ 510 (783)
..+.+++|+++.++...| ...|.+..+|++.++|.++++.+.....+.+++.++.++.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 358899999999998776 3368899999999999999999999999999988876544
No 154
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=92.84 E-value=0.74 Score=47.27 Aligned_cols=145 Identities=11% Similarity=0.109 Sum_probs=90.5
Q ss_pred ccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC------CCCCeEEEeecCchhhHHHHHHHHHHc--
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS------IRSPYFFRGALNDSSQVGAITAIIKAF-- 74 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~------~~~~~~fr~~p~~~~~~~ai~~~l~~~-- 74 (783)
|++ +++++||+- .+..+.+++.. ..++|+|-.+.++|.-.. ...+++..+. +..-.....++++++
T Consensus 65 l~~-~~~DlIiai-~t~aa~a~~~~--~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P 138 (302)
T 3lkv_A 65 FVG-ENPDVLVGI-ATPTAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILP 138 (302)
T ss_dssp HHT-TCCSEEEEE-SHHHHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHST
T ss_pred HHh-cCCcEEEEc-CCHHHHHHHhh--cCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCC
Confidence 444 588888863 34455555543 357999887777665431 2235565443 222344556666553
Q ss_pred CCeEEEEEEEeCCc-CCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhh---HHHHH
Q 036525 75 GWREAVPIYVDNQY-GEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSL---GSRIF 150 (783)
Q Consensus 75 gw~~vaii~~d~~~-G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~---~~~~~ 150 (783)
+.++|++||...+- .....+.+++.+++.|++++.... .+..++...+..+. .+.|++++...... ...+.
T Consensus 139 ~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~----~~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~ 213 (302)
T 3lkv_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATA----LKSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMI 213 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEEC----SSGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEec----CChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHH
Confidence 78999999965543 345678889999999999876543 23446766666664 57899988766542 33444
Q ss_pred HHHHHcCc
Q 036525 151 EKANEIGL 158 (783)
Q Consensus 151 ~~a~~~g~ 158 (783)
..+.+.+.
T Consensus 214 ~~~~~~~i 221 (302)
T 3lkv_A 214 VAANQAKT 221 (302)
T ss_dssp HHHHHTTC
T ss_pred HHHhhcCC
Confidence 55555553
No 155
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=92.62 E-value=0.38 Score=49.88 Aligned_cols=151 Identities=9% Similarity=0.050 Sum_probs=93.6
Q ss_pred CCeEEEE-ccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHH-------cCCeE
Q 036525 7 AQVRVML-GPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKA-------FGWRE 78 (783)
Q Consensus 7 ~~V~aiI-Gp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~-------~gw~~ 78 (783)
.+|.+|| -|..+.........+...++|+|......+.. .+....+..++...+..++++|.. .|.++
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~----~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~ 133 (330)
T 3uug_A 58 KGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS----GDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFN 133 (330)
T ss_dssp HTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC----TTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEE
T ss_pred cCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC----CceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceE
Confidence 4677776 55555455556666778899999987543321 122234566777788888888876 68899
Q ss_pred EEEEEEeC--CcCCcchHHHHHHHhhC---C-ceEeEEE-----ecCCCCChhHHHHHHHHHhc-----cCceEEEEEcC
Q 036525 79 AVPIYVDN--QYGEAMIPSLTDALHAI---D-TRVPYRS-----VISPLATDDQIEKELYKLFT-----MQTRVFIVHKL 142 (783)
Q Consensus 79 vaii~~d~--~~G~~~~~~~~~~l~~~---g-~~v~~~~-----~i~~~~~~~d~~~~l~~l~~-----~~~dvii~~~~ 142 (783)
++++.... ...+...++|.+++++. | +++.... ....+.+...-...+.++.+ ..+++|+ +.+
T Consensus 134 i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~n 212 (330)
T 3uug_A 134 IELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL-SPY 212 (330)
T ss_dssp EEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSS
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECC
Confidence 99997433 23355678888888886 3 5543211 00011121222333444433 4667654 455
Q ss_pred hhhHHHHHHHHHHcCccccc
Q 036525 143 PSLGSRIFEKANEIGLMNKG 162 (783)
Q Consensus 143 ~~~~~~~~~~a~~~g~~~~~ 162 (783)
...+..+++.+++.|+..++
T Consensus 213 d~~A~g~~~al~~~g~~vP~ 232 (330)
T 3uug_A 213 DGLSIGIISSLKGVGYGTKD 232 (330)
T ss_dssp HHHHHHHHHHHHHTTCSSSS
T ss_pred CchHHHHHHHHHHcCCCCCC
Confidence 66788899999999986554
No 156
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=92.50 E-value=0.019 Score=53.55 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=55.7
Q ss_pred HHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeec
Q 036525 433 GFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTV 507 (783)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~ 507 (783)
++++|.+++.. .+....++.+++||++.++...| ...|.+..+|++.++|+++++++.+...+.+++.++.
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555432 22334578899999999998776 3468999999999999999999999999999998874
No 157
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=92.48 E-value=0.22 Score=42.94 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeec
Q 036525 454 QVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTV 507 (783)
Q Consensus 454 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~ 507 (783)
++.+++|+++.++...| ...|.+..+|++.++|.++++.+.....+.+.+.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999776 3368899999999999999999999999999887754
No 158
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=91.18 E-value=0.92 Score=48.34 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
...+.++++.+|.+++.+|+...-...+..+.+.+.|++.|+++..-..+..+++.+.+...+..+++.++|+||..+.+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 98 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGG 98 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 44567777888999999998765444457889999999999988655556667777788888889999999999988776
Q ss_pred h--hHHHHHHHHH
Q 036525 144 S--LGSRIFEKAN 154 (783)
Q Consensus 144 ~--~~~~~~~~a~ 154 (783)
. |+..++....
T Consensus 99 sv~D~aK~ia~~~ 111 (383)
T 3ox4_A 99 SPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5 6777776655
No 159
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.03 E-value=0.4 Score=49.72 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=50.3
Q ss_pred cCccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeecccc
Q 036525 452 KHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQL 510 (783)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~ 510 (783)
..++.+++||++.++...| ...|.+..+|++.+++.++++++.+..++.+.+.++.+..
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998776 3367888999999999999999999999999888876543
No 160
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=90.92 E-value=0.41 Score=43.42 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=47.4
Q ss_pred CccchhHHHHHHHhhhcc-cc-cccccchhhhHHHHHHHHHHHHHHhhhhhhheeec
Q 036525 453 HQVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWCFVVLILTQSYTASLTSLLTV 507 (783)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~ 507 (783)
.++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.....+.+.+.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999777 33 67899999999999999999999999988876654
No 161
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=90.86 E-value=1.2 Score=47.52 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcCC--cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 66 AITAIIKAFGWREAVPIYVDNQYGE--AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 66 ai~~~l~~~gw~~vaii~~d~~~G~--~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
.+.++++.+|.+++.+|+....+.. +..+.+.+.|++.|+++..-..+..+++.+.+...+..+++.++|+||..+.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3667788888899999886666555 58999999999999887544445556667788888888999999999977665
Q ss_pred h--hHHHHHHHH
Q 036525 144 S--LGSRIFEKA 153 (783)
Q Consensus 144 ~--~~~~~~~~a 153 (783)
. |+..++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 4 777777665
No 162
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=90.60 E-value=1.4 Score=46.09 Aligned_cols=155 Identities=9% Similarity=0.059 Sum_probs=93.1
Q ss_pred ccccCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC--CCCCeEEEeecCchhhHHHHHHHHHHcCCeEEE
Q 036525 3 LLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS--IRSPYFFRGALNDSSQVGAITAIIKAFGWREAV 80 (783)
Q Consensus 3 Li~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~--~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~va 80 (783)
+..+.++.+||............+.+.+.+++.|-..+....-.. ..+.. ..+..++..-+..++++|...|.++++
T Consensus 82 ~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia 160 (371)
T 3qi7_A 82 LADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFI 160 (371)
T ss_dssp GGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEE
T ss_pred HhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEE
Confidence 456677888886544333344455566556665544432111000 00011 245666666677788999999999999
Q ss_pred EEEEeCCc----CCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh---------cc-CceEEEEEcChhhH
Q 036525 81 PIYVDNQY----GEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF---------TM-QTRVFIVHKLPSLG 146 (783)
Q Consensus 81 ii~~d~~~----G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~---------~~-~~dvii~~~~~~~~ 146 (783)
+|....+. .....+.+++++++.|+.+..... + +.+.+.-.....++. +. .+++ |.+++-..+
T Consensus 161 ~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~-~-d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TA-IFatND~mA 237 (371)
T 3qi7_A 161 HYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNT-P-NINTEEDKNKVKQFLNEDIEKQVKKYGKDIN-VFGVNEYMD 237 (371)
T ss_dssp EEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEE-C-CCSSTHHHHHHHHHHHHHHHHHHHHHCSCCE-EEESSHHHH
T ss_pred EEeccccccchhHHHHHHHHHHHHHHcCCCceeecC-C-CCchHHHHHHHHHHHhccccchhhccCCCcE-EEECCHHHH
Confidence 99864432 233678899999999998865533 2 222222222333322 22 3354 556677889
Q ss_pred HHHHHHHHHcCcccc
Q 036525 147 SRIFEKANEIGLMNK 161 (783)
Q Consensus 147 ~~~~~~a~~~g~~~~ 161 (783)
..+++++++.|+..|
T Consensus 238 iG~ikal~e~Gi~VP 252 (371)
T 3qi7_A 238 EVILTKALELKYIVA 252 (371)
T ss_dssp HHHHHHHHHHCCBBC
T ss_pred HHHHHHHHHcCCccC
Confidence 999999999997544
No 163
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=90.16 E-value=0.48 Score=46.25 Aligned_cols=73 Identities=8% Similarity=0.184 Sum_probs=55.9
Q ss_pred HHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcc-c-ccccccchhhhHHHHHHHHHHHHHHhhhhhhheee
Q 036525 430 IFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILTQSYTASLTSLLT 506 (783)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt 506 (783)
++.+.+++.+|+... ++...++.+++|+++.++...| + ..|.+..+|++.+++++.++.+.+...+.+++.++
T Consensus 145 ~~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 145 LYGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp HHHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566665321 1233578999999999998766 3 36889999999999999999999999999988764
No 164
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=89.75 E-value=0.62 Score=47.69 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=49.4
Q ss_pred ccCccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeecc
Q 036525 451 AKHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQ 508 (783)
Q Consensus 451 ~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~ 508 (783)
...++.+++||++.++...| ...|.+..+|++.+++.++++++.+..++.+.+.++.+
T Consensus 79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 79 RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34578999999999998766 33678889999999999999999999999888887654
No 165
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=88.79 E-value=0.82 Score=51.62 Aligned_cols=48 Identities=6% Similarity=0.002 Sum_probs=39.8
Q ss_pred CccchhHHHHHHHhhhcc-c-ccccccchhhhHHHHHHHHHHHHHHhhhh
Q 036525 453 HQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILTQSYTAS 500 (783)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~l~~~w~l~~lil~s~Yta~ 500 (783)
.++.+++||++.++...| + ..|.+..+|++.++|.++++.+.....+.
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999998776 3 35788899999999999998877766665
No 166
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=88.62 E-value=1.7 Score=42.22 Aligned_cols=80 Identities=5% Similarity=-0.080 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCC-------CChhHHHHHHHHHhcc--Cc
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTM--QT 134 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~-------~~~~d~~~~l~~l~~~--~~ 134 (783)
..++++.++..|.++|+++. .|+....+.+.+.+++.|+++......... .+...+...+.++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 67777778888889999995 566676778888999999998665543322 1223456666666666 78
Q ss_pred eEEEEEcChhhH
Q 036525 135 RVFIVHKLPSLG 146 (783)
Q Consensus 135 dvii~~~~~~~~ 146 (783)
|+||+.|..-..
T Consensus 173 daIvLgCT~l~~ 184 (223)
T 2dgd_A 173 DAVYIACTALST 184 (223)
T ss_dssp SEEEECCTTSCC
T ss_pred CEEEEeCCcccH
Confidence 888887665443
No 167
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=88.04 E-value=4.4 Score=42.52 Aligned_cols=142 Identities=10% Similarity=-0.032 Sum_probs=83.8
Q ss_pred cCCeEEEEccCCchhHHHHHcccCCC-CccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHH-H-cCCeEEEEE
Q 036525 6 NAQVRVMLGPEDSMPTNFIIQPGNKS-QVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIK-A-FGWREAVPI 82 (783)
Q Consensus 6 ~~~V~aiIGp~~S~~~~av~~~~~~~-~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~-~-~gw~~vaii 82 (783)
++++.+||+. +.....++..++.++ ++|++...... . .+++-.... +..++.-++-++. . -+-++|++|
T Consensus 84 ~~g~d~Ii~~-g~~~~~~~~~vA~~~Pdv~fv~id~~~---~---~~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfV 155 (356)
T 3s99_A 84 RAGNKLIFTT-SFGYMDPTVKVAKKFPDVKFEHATGYK---T---ADNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYI 155 (356)
T ss_dssp HTTCSEEEEC-SGGGHHHHHHHHTTCTTSEEEEESCCC---C---BTTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HCCCCEEEEC-CHHHHHHHHHHHHHCCCCEEEEEeccc---c---CCcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEE
Confidence 4589999987 445566777777775 78888764321 1 233333333 3344444444431 2 234799999
Q ss_pred EEeC-CcCCcchHHHHHHHhhCCceEeEEEecCCCCCh-hHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 83 YVDN-QYGEAMIPSLTDALHAIDTRVPYRSVISPLATD-DQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 83 ~~d~-~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~-~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
.... .........|.+.++..+..+.....+.-+-.+ ..=......+.+.++|+|+.+.... -++++|++.|+
T Consensus 156 gg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 156 GSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 8533 223345778888888877665444433322122 1222344556677999988876553 57889999884
No 168
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=87.97 E-value=0.3 Score=51.11 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=45.6
Q ss_pred ccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeecccc
Q 036525 454 QVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQL 510 (783)
Q Consensus 454 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~ 510 (783)
++.+++||++.++...| ...|.+..+|++.++|.++++++.....+.+++.++....
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998776 3367889999999999999999999999999888876443
No 169
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=87.69 E-value=2 Score=45.69 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-
Q 036525 66 AITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS- 144 (783)
Q Consensus 66 ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~- 144 (783)
.+.++++.+|.+++.+++....+..+..+.+.+.|++.|+++.....+..+++.+.+...+..+++.++|+||..+.+.
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv 100 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSP 100 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 3667777788899988885544444578899999999998875444455666777888888889999999999776654
Q ss_pred -hHHHHHHHHH
Q 036525 145 -LGSRIFEKAN 154 (783)
Q Consensus 145 -~~~~~~~~a~ 154 (783)
|+..++....
T Consensus 101 ~D~aK~iA~~~ 111 (386)
T 1rrm_A 101 QDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7777776655
No 170
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=86.19 E-value=2.6 Score=42.48 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCC-------CChhHHHHHHHHHhccCceE
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTMQTRV 136 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~-------~~~~d~~~~l~~l~~~~~dv 136 (783)
+.++++.++..|.++|+++. .|.....+.+.+.+++.|++|......... .+...+...+.++...++|+
T Consensus 134 ~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 45666667778889999995 566666778899999999998765543321 12234666666776678888
Q ss_pred EEEE-cChhh
Q 036525 137 FIVH-KLPSL 145 (783)
Q Consensus 137 ii~~-~~~~~ 145 (783)
||+. |..-.
T Consensus 211 IvLg~CT~l~ 220 (273)
T 2xed_A 211 LVISCAVQMP 220 (273)
T ss_dssp EEEESSSSSC
T ss_pred EEEcCCCCcc
Confidence 8888 65543
No 171
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=85.72 E-value=2 Score=46.07 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcCC-cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh
Q 036525 66 AITAIIKAFGWREAVPIYVDNQYGE-AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS 144 (783)
Q Consensus 66 ai~~~l~~~gw~~vaii~~d~~~G~-~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~ 144 (783)
.+.++++.+|.+++.+|+.+...-. +..+.+.+.|++.|+++..-..+.++++.+.+...+..+++.++|+||..+.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 4667778889899998885343333 468889999999998875433344456667788888889999999999776654
Q ss_pred --hHHHHHHHH
Q 036525 145 --LGSRIFEKA 153 (783)
Q Consensus 145 --~~~~~~~~a 153 (783)
|+..++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 777777654
No 172
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=85.47 E-value=3.7 Score=41.78 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=60.2
Q ss_pred HHHHhcCCCcccce-ecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecc--cccccceEEEec----
Q 036525 522 GILKQLGFDERKLV-VYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEP--KFKTAGFGFVFP---- 594 (783)
Q Consensus 522 ~~l~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~--~~~~~~~~~~~~---- 594 (783)
..++..++....+. .+.+..+..+++.+|+ +||++...++......+. . ++++.. .+......++++
T Consensus 122 ~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~ 195 (308)
T 2x26_A 122 RALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG-G-VRVLKDGTDLNQTGSFYLAARPYA 195 (308)
T ss_dssp HHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS-S-EEEEEESTTSCCCCEEEEEEHHHH
T ss_pred HHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC-C-cEEEecCCCcCCcceEEEEcHHHH
Confidence 34555666543332 3556788999999999 999998888777665543 2 444432 222222233433
Q ss_pred -CCCCChHHHHHHHHh----hhcCC-hHHHHHHHhcC
Q 036525 595 -LHSPLVHDVSKAILN----VTEGD-KMKEIEDAWFK 625 (783)
Q Consensus 595 -k~spl~~~in~~il~----l~e~G-~~~~~~~kw~~ 625 (783)
++..+.+.|++++.+ +.+++ ...++..+|++
T Consensus 196 ~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 196 EKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 234578888888776 45554 46667777774
No 173
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=85.30 E-value=1.6 Score=44.95 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=48.6
Q ss_pred ccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccc
Q 036525 454 QVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQ 509 (783)
Q Consensus 454 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~ 509 (783)
++.+++|+++.++...| ...|.+..+|++.+++++.++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999776 336789999999999999999999999999988876543
No 174
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=85.11 E-value=0.73 Score=48.57 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=56.6
Q ss_pred HHHHHHhhheeecccCCCCCCCccCccchhHHHHHHHhhhcc-c-ccccccchhhhHHHHHHHHHHHHHHhhhhhhheee
Q 036525 429 FIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWCFVVLILTQSYTASLTSLLT 506 (783)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt 506 (783)
+++.+++.+.+++..++ ....++.+++|+++.++...| + ..|.+..+|++.++++++++++.+...+.+++.+.
T Consensus 140 ~~~~a~~~~~~e~~~~~----~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 140 LFAVALAAYVIERDIQP----EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHHHTTTCH----HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCC----cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667764322 112368899999999998776 3 36789999999999999999999999999987764
No 175
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=84.19 E-value=2.8 Score=43.60 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=63.2
Q ss_pred HHHHhcCCCcc--cceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccc-ccc-ceEEEecCC-
Q 036525 522 GILKQLGFDER--KLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKF-KTA-GFGFVFPLH- 596 (783)
Q Consensus 522 ~~l~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~-~~~-~~~~~~~k~- 596 (783)
.++++.++... +++.+ +..+...+|.+|+ +||++...++......+...+.......+ ... ..+++++++
T Consensus 172 ~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (341)
T 3un6_A 172 ELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGEL 246 (341)
T ss_dssp HHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHH
T ss_pred HHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHH
Confidence 35556666433 33333 5678899999999 99999988887666555432222222222 222 256777654
Q ss_pred ---CC-----ChHHHHHHHHhhhcCChHHHHHHHhcC
Q 036525 597 ---SP-----LVHDVSKAILNVTEGDKMKEIEDAWFK 625 (783)
Q Consensus 597 ---sp-----l~~~in~~il~l~e~G~~~~~~~kw~~ 625 (783)
.| +++.+++++..+.+++.-.++..+|++
T Consensus 247 ~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 247 LDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 33 677778888888888755577788885
No 176
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=83.97 E-value=3.8 Score=43.27 Aligned_cols=89 Identities=10% Similarity=0.001 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcC-CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYG-EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G-~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
..+.++++.+| +++.+|+....+- .+..+.+.+.|++.|+++..-..+..+++.+.+...+..+++.++|+||..+.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 108 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGG 108 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESH
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 34566677778 8999888664444 346889999999999887554545666677788888888999999999977665
Q ss_pred h--hHHHHHHHHH
Q 036525 144 S--LGSRIFEKAN 154 (783)
Q Consensus 144 ~--~~~~~~~~a~ 154 (783)
. |+..++....
T Consensus 109 sv~D~AK~iA~~~ 121 (371)
T 1o2d_A 109 SPMDFAKAVAVLL 121 (371)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4 6777766553
No 177
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=83.64 E-value=1.6 Score=46.43 Aligned_cols=82 Identities=9% Similarity=0.116 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-
Q 036525 66 AITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS- 144 (783)
Q Consensus 66 ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~- 144 (783)
.+.++++.+| +++.+|+....+. ...+.+.+.|++ |+++.+ ..+..+++.+++...+..+++.++|+||..+.+.
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 118 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKT 118 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 3667778888 9998888655554 367778888998 988844 4456666777888888888889999999888776
Q ss_pred -hHHHHHH
Q 036525 145 -LGSRIFE 151 (783)
Q Consensus 145 -~~~~~~~ 151 (783)
|+..++.
T Consensus 119 ~D~AK~iA 126 (387)
T 3uhj_A 119 ADTAKIVA 126 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6666665
No 178
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=82.25 E-value=2.9 Score=43.21 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=34.8
Q ss_pred HHHHHhcCCCc--ccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhc
Q 036525 521 LGILKQLGFDE--RKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQH 573 (783)
Q Consensus 521 ~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 573 (783)
..+++..+... .+++.+....+...+|.+|+ +||++...++......+.
T Consensus 155 ~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 155 NFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ----IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS----CSEEEEETTHHHHHHHTT
T ss_pred HHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC----ccEEEecchhHHHHHhCC
Confidence 34556666643 34456667789999999999 999998888776555443
No 179
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=78.88 E-value=3 Score=46.23 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=45.6
Q ss_pred cCccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhhee
Q 036525 452 KHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLL 505 (783)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~L 505 (783)
..++..++|+++.++...| ...|.+..+|++.++++++++++.+.+.|.+.+.+
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f 428 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF 428 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999998766 33678888999999999999999999998887644
No 180
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=77.97 E-value=11 Score=40.15 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=64.2
Q ss_pred CeEEEEEEEeCCcC--CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh------hhHH
Q 036525 76 WREAVPIYVDNQYG--EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP------SLGS 147 (783)
Q Consensus 76 w~~vaii~~d~~~G--~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~------~~~~ 147 (783)
-++|+|+| ++.|| +..++.+.+.+.+.|++++........ ..+....+..+. +++.|++.+.+ +...
T Consensus 265 ~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~--~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 265 KGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE--RPAISEILKDIP--DSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp TTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHH
T ss_pred ccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC--CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHH
Confidence 35899998 67787 456899999999999988765554433 336666666554 56677776544 2455
Q ss_pred HHHHHHHHcCccccceEEEEeCCccc
Q 036525 148 RIFEKANEIGLMNKGCVWIMTDGMTN 173 (783)
Q Consensus 148 ~~~~~a~~~g~~~~~~~~i~~~~~~~ 173 (783)
.++..........+....+++.+|..
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHhcccCCCEEEEEECCCCCc
Confidence 67777777766566666788888874
No 181
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=77.96 E-value=6.5 Score=40.87 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=46.3
Q ss_pred HHHHHhcCCCcccceec-CChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccc---cccceEEEecCC
Q 036525 521 LGILKQLGFDERKLVVY-NSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKF---KTAGFGFVFPLH 596 (783)
Q Consensus 521 ~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~---~~~~~~~~~~k~ 596 (783)
...++..++....+... .+..+...+|.+|+ +||++...+..... .+...+.......+ .....+++++++
T Consensus 135 ~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~~~~~~~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 209 (348)
T 3uif_A 135 SNLLQSEGLTFKDFKIVNVNPQVGAAALASGT----VDGFFSLFDSYILE-DRGVGKIIWSTKTAPVDWKLMGGVWARND 209 (348)
T ss_dssp HHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS----SSEEEESTTHHHHH-HTTSEEEEEEGGGSCGGGSCCEEEEEEHH
T ss_pred HHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC----CCEEEechHHHHHH-hcCCcEEEEeccccCCCCcceeEEEECHH
Confidence 44555666654443332 36778999999999 99998887765432 22211111111112 123456777764
Q ss_pred ----C-CChHHHHHHHHhh
Q 036525 597 ----S-PLVHDVSKAILNV 610 (783)
Q Consensus 597 ----s-pl~~~in~~il~l 610 (783)
. .+.+.|.+++.+-
T Consensus 210 ~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 210 FVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHH
Confidence 3 3555565555443
No 182
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=77.69 E-value=6.3 Score=40.03 Aligned_cols=79 Identities=9% Similarity=0.069 Sum_probs=59.8
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhh-HHHHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSL-GSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~-~~~~~~~a 153 (783)
++|+++..+ +.|...+.+.+++++++.|.++..... ..+.......+..+.+.++|.||+...... ....++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 788899999999999999998865432 223334556778888899999998765543 46778888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 88885
No 183
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=77.18 E-value=3 Score=41.85 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=46.4
Q ss_pred CccchhHHHHHHHhhhcc-cc-cccccc-------hhhhHHHHHHHHHHHHHHhhhhhhheeecccc
Q 036525 453 HQVGTSFWFSFSTMVFSQ-RE-RVISNL-------ARFVVIVWCFVVLILTQSYTASLTSLLTVQQL 510 (783)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~-------~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~ 510 (783)
..+.+++|+++.++...| ++ .|.+.. +|++.++|+++++.+.....+.+++.+...++
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l 266 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKF 266 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998776 33 455543 59999999999999999999999888765443
No 184
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=75.64 E-value=5.2 Score=42.17 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=65.5
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh--
Q 036525 67 ITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-- 144 (783)
Q Consensus 67 i~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-- 144 (783)
+.++++.+| +++.+|+....+. ...+.+.+.|++.|+++.. ..+....+.+.+...+..+++.++|+||..+.+.
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 99 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL 99 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 566777778 8998888554443 5678889999999988753 3344344445677777888889999999776654
Q ss_pred hHHHHHHHHHHcCccccceEEEEeC
Q 036525 145 LGSRIFEKANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 145 ~~~~~~~~a~~~g~~~~~~~~i~~~ 169 (783)
|+..++... .| ..++-|-|.
T Consensus 100 D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 100 DTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHH--HT---CEEEEEESS
T ss_pred HHHHHHHHh--cC---CCEEEeccc
Confidence 777776633 23 345555555
No 185
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=75.57 E-value=10 Score=38.63 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=66.4
Q ss_pred HhcCCCcccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEe---cc----------c--------
Q 036525 525 KQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMI---EP----------K-------- 583 (783)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v---~~----------~-------- 583 (783)
+..+.+. ..++|....+.+.+|..|+ +|+++.+......+++.. + ++.+ ++ .
T Consensus 151 ~~~G~~~-~~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g-~-lr~Lav~~~~r~~~~pdvPt~~e~G~~~ 223 (301)
T 2qpq_A 151 VSAKTHM-VHVPYKGCGPALNDVLGSQ----IGLAVVTASSAIPFIKAG-K-LQALAVTSKERSALLPEVPTVAEQGVAG 223 (301)
T ss_dssp HHHTCCC-EEEECSSHHHHHHHHHTTS----SSCEEEEHHHHHHHHHTT-S-EEEEEECSSSCCTTCTTSCBSGGGTCTT
T ss_pred HHhCCCe-EEeccCChHHHHHHHHCCC----ccEEEEcHHHHHHHHhcC-C-eEEEEEcCCccccccCCCCChHHhCCCc
Confidence 3445432 3468999999999999999 999998877665555432 1 3332 10 0
Q ss_pred c-cccceEEEecCCCC--ChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 584 F-KTAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 584 ~-~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
+ ....++++.|||-| +++.++++|.++.+++.+++..+++-
T Consensus 224 ~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g 267 (301)
T 2qpq_A 224 YELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLG 267 (301)
T ss_dssp CCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred eEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 1 12346899999954 99999999999999999888777663
No 186
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=75.44 E-value=5.6 Score=41.68 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=65.9
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh--
Q 036525 67 ITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-- 144 (783)
Q Consensus 67 i~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-- 144 (783)
+.++++.+|.+++.+|+....+. ...+.+.+.|++.|+++...... ++.+.+.+... ..+++.++|+||..+.+.
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~ 101 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNIDFDEIGTN-AFKIPAEVDALIGIGGGKAI 101 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCCBHHHHHHH-HTTSCTTCCEEEEEESHHHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHH-HHhhhcCCCEEEEECChHHH
Confidence 66777778888998888655443 56788888999899887543323 34555667766 777888999999776654
Q ss_pred hHHHHHHHHHHcCccccceEEEEeCCc
Q 036525 145 LGSRIFEKANEIGLMNKGCVWIMTDGM 171 (783)
Q Consensus 145 ~~~~~~~~a~~~g~~~~~~~~i~~~~~ 171 (783)
|+..++... .| ..++-|-|...
T Consensus 102 D~aK~vA~~--~~---~p~i~IPTT~~ 123 (354)
T 3ce9_A 102 DAVKYMAFL--RK---LPFISVPTSTS 123 (354)
T ss_dssp HHHHHHHHH--HT---CCEEEEESCCS
T ss_pred HHHHHHHhh--cC---CCEEEecCccc
Confidence 677776633 33 34555555543
No 187
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=74.36 E-value=15 Score=37.67 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=65.8
Q ss_pred HhcCCCcccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEe---c--------c--cc-------
Q 036525 525 KQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMI---E--------P--KF------- 584 (783)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v---~--------~--~~------- 584 (783)
+..+.+- ..++|....+.+.+|..|+ +|+++.+......+++.. + ++.+ + + .+
T Consensus 160 ~~~Gi~~-~~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~~~~i~~g-~-lr~Lav~~~~r~~~~pdvPt~~E~G~~~ 232 (312)
T 2f5x_A 160 EALGVNL-LTIPYKGTAPAMNDLLGKQ----VDLMCDQTTNTTQQITSG-K-VKAYAVTSLKRVPTLPDLPTMDESGYKG 232 (312)
T ss_dssp HHHTCCC-EEEECSSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTT-S-SEEEEECSSSCCTTSTTSCBTTTTTCTT
T ss_pred HHHCCCe-EEeccCChHHHHHHHHcCC----ccEEEechHHHHHHHHcC-C-eEEEEEcCccchhhcCCCCCHhhcCCCC
Confidence 3445432 3468999999999999999 999999877665555432 1 2222 1 0 01
Q ss_pred --cccceEEEecCCCC--ChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 585 --KTAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 585 --~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
....++++.|||-| +++.++++|.++.+++.+++..+++-
T Consensus 233 ~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 276 (312)
T 2f5x_A 233 FEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLG 276 (312)
T ss_dssp CCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred eeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 12246889999954 99999999999999998887766553
No 188
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=74.22 E-value=8.3 Score=38.74 Aligned_cols=84 Identities=8% Similarity=0.031 Sum_probs=60.5
Q ss_pred CCeEEEEEEEe---CCcCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHH
Q 036525 75 GWREAVPIYVD---NQYGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRI 149 (783)
Q Consensus 75 gw~~vaii~~d---~~~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~ 149 (783)
.-++|+++..+ +.|...+...+++++++. |..+..........+.......+..+.+.++|.||+..... .....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 44688888854 567788899999999998 77776544322223334556778888889999999876554 45677
Q ss_pred HHHHHHcCc
Q 036525 150 FEKANEIGL 158 (783)
Q Consensus 150 ~~~a~~~g~ 158 (783)
++.+.+.|+
T Consensus 87 ~~~~~~~~i 95 (304)
T 3gbv_A 87 TDALNELGI 95 (304)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 888888885
No 189
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=73.77 E-value=14 Score=34.05 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=49.5
Q ss_pred CeEEEEEEEeCCcCC---cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc-CceEEEEEcCh
Q 036525 76 WREAVPIYVDNQYGE---AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFIVHKLP 143 (783)
Q Consensus 76 w~~vaii~~d~~~G~---~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~-~~dvii~~~~~ 143 (783)
--+|+||...|+-|+ .....+.+.+++.|.++.....++. +.+++...+.+..+. ++|+||..+..
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 348999998888764 2357888999999999988777762 345777888777655 68999988644
No 190
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=72.66 E-value=9.1 Score=38.21 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=59.3
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh-hhHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP-SLGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~-~~~~~~~~~a 153 (783)
++|+++.. ++.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+.... ......++++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 57888886 4557778899999999999998866532 2333445667788888899999987654 4566778888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88885
No 191
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=71.50 E-value=8 Score=40.08 Aligned_cols=81 Identities=7% Similarity=0.076 Sum_probs=59.0
Q ss_pred CCeEEEEEEEe---CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc--cCceEEEEEcChhhHHHH
Q 036525 75 GWREAVPIYVD---NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFIVHKLPSLGSRI 149 (783)
Q Consensus 75 gw~~vaii~~d---~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~--~~~dvii~~~~~~~~~~~ 149 (783)
+-.+|+++..+ +.|.....+.+++++++.|.++..... ..+.......+.++.+ .++|.||+.........+
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~ 78 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQI 78 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHH
Confidence 34689999864 367888999999999999998865431 2233344556777766 599999998655567778
Q ss_pred HHHHHHcCc
Q 036525 150 FEKANEIGL 158 (783)
Q Consensus 150 ~~~a~~~g~ 158 (783)
++.+.+.|+
T Consensus 79 ~~~~~~~gi 87 (350)
T 3h75_A 79 LRLSQGSGI 87 (350)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHhCCC
Confidence 888888885
No 192
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=69.41 E-value=27 Score=35.55 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=42.3
Q ss_pred HHHHHhcCCCcccceec-CChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEEecccccccceEEEecCC
Q 036525 521 LGILKQLGFDERKLVVY-NSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLH 596 (783)
Q Consensus 521 ~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~ 596 (783)
..+++..++....+... .+..+...+|.+|+ +||++...++......+...++......+......+++++.
T Consensus 147 ~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 147 LRVLAKSGLSMRDITPLYLSPANARAAFAAGQ----VDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp HHHHHHTTCCGGGSEEEECCHHHHHHHHHTTC----CSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred HHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCC----CCEEEEccHHHHHHHhcCCcEEEecccccCCCccEEEECHH
Confidence 34555566654333322 26788999999999 99998888877666554321122223333333445566553
No 193
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=69.38 E-value=8.9 Score=40.13 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS 144 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~ 144 (783)
..+.++++.+|.+++.+|+....+ +..+.+.+.|++.+..+ + ..+.++++.+.+...+..+++.++|+||-.+.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 100 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMHVPIESARDATARAREAGADCAVAVGGGS 100 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcH
Confidence 446778888999999999865544 35777888888765332 2 2233445556777788888889999999887776
Q ss_pred --hHHHHHHHHHHcCccccceEEEEeCC
Q 036525 145 --LGSRIFEKANEIGLMNKGCVWIMTDG 170 (783)
Q Consensus 145 --~~~~~~~~a~~~g~~~~~~~~i~~~~ 170 (783)
|+..++... .+ ..++-|-|..
T Consensus 101 viD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 101 TTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred HHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 666666543 33 3455565554
No 194
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=69.19 E-value=11 Score=39.50 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS 144 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~ 144 (783)
..+.++++.+|.+++.+|+..... +..+.+.+.|++.+..+ + ..+.++.+.+.+...+..+++.++|+||-.+.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 98 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGS 98 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcH
Confidence 347778888999999988865543 45778888888765433 2 2233455556777888888899999999887775
Q ss_pred --hHHHHHHHHHHcCccccceEEEEeCC
Q 036525 145 --LGSRIFEKANEIGLMNKGCVWIMTDG 170 (783)
Q Consensus 145 --~~~~~~~~a~~~g~~~~~~~~i~~~~ 170 (783)
|+..++... .+ ..++-|-|..
T Consensus 99 ~iD~aK~iA~~--~~---~p~i~IPTTa 121 (353)
T 3hl0_A 99 TTGLGKAIALR--TD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHH--HC---CEEEEEECSS
T ss_pred HHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 666666442 33 3455555554
No 195
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=67.89 E-value=15 Score=37.58 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=65.9
Q ss_pred HhcCCCcccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhc-CCceEEecc---------------cc----
Q 036525 525 KQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQH-CSKYTMIEP---------------KF---- 584 (783)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~---------------~~---- 584 (783)
+..+.+- ..++|....+.+.+|..|+ +|+++........+++.. .+-+.+.++ .+
T Consensus 164 ~~~Gi~~-~~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~ 238 (314)
T 2dvz_A 164 MATGTDI-VHVPYKGSGPAVADAVGGQ----IELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLN 238 (314)
T ss_dssp HHHTCCC-EEEECSSHHHHHHHHHHTS----SSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGC
T ss_pred HHhCCCe-EEcccCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceE
Confidence 3344432 3468999999999999999 999999877665555432 111211110 01
Q ss_pred cccceEEEecCCCC--ChHHHHHHHHhhhcCChHHHHHHHhc
Q 036525 585 KTAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 624 (783)
Q Consensus 585 ~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~~~~kw~ 624 (783)
....++++.|+|-| .++.+++++.++.+++.+++..+++-
T Consensus 239 ~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 239 QPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp CCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred EeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 12246899999954 99999999999999998888776653
No 196
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=67.40 E-value=14 Score=39.38 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcCC-cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-
Q 036525 67 ITAIIKAFGWREAVPIYVDNQYGE-AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS- 144 (783)
Q Consensus 67 i~~~l~~~gw~~vaii~~d~~~G~-~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~- 144 (783)
+.++++ +| +++.+|+.+..... +..+.+.+.|+ |+++..-..+.++++.+.+...+..+++.++|+||..|.+.
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 555666 67 89888885443332 35777777776 77654333344455666778888888999999999776654
Q ss_pred -hHHHHHHHH
Q 036525 145 -LGSRIFEKA 153 (783)
Q Consensus 145 -~~~~~~~~a 153 (783)
|+..++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 777777655
No 197
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=66.93 E-value=13 Score=37.86 Aligned_cols=79 Identities=9% Similarity=0.042 Sum_probs=58.8
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a 153 (783)
++|+++..+ +.|...+...+.+++++.|.++..... ..+...-...+..+.+.++|.||+..... .....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888864 678888999999999999998865441 22333445677777788999999876543 456778888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88885
No 198
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=66.39 E-value=9.7 Score=38.36 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=58.6
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a 153 (783)
++++++.. ++.|.....+.+++++++.|..+.... ....+.......+..+.+.++|.||+..... .....++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 57888884 467788889999999999999886532 2223334556777888888999988876443 356678888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88885
No 199
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=64.95 E-value=41 Score=26.69 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=27.0
Q ss_pred EEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceE
Q 036525 53 FFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRV 107 (783)
Q Consensus 53 ~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v 107 (783)
..-+...|...++..+++++.+|..-..+||+.| +...+.|..+.+..|.+|
T Consensus 53 ivvvvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfev 104 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEV 104 (134)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCE
T ss_pred EEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceE
Confidence 3444445555555555555555555555555332 234555555555555554
No 200
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=64.36 E-value=19 Score=35.82 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=58.3
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh----hHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS----LGSRIF 150 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~----~~~~~~ 150 (783)
++|+++..+ +.|...+.+.+++++++.|..+..... ..+...-...+..+.+.++|.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST---NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999854 567788999999999999998865432 22333455677888889999999876432 345677
Q ss_pred HHHHHcCc
Q 036525 151 EKANEIGL 158 (783)
Q Consensus 151 ~~a~~~g~ 158 (783)
+++.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 78888885
No 201
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=64.32 E-value=13 Score=37.03 Aligned_cols=81 Identities=9% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHH
Q 036525 75 GWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFE 151 (783)
Q Consensus 75 gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~ 151 (783)
.-++|+++..+ +.|...+...+++++++.|.++..... ..+.......+..+.+.++|.||+..... .....++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 34688888854 567788899999999999998865432 23334455677888888999888875443 4457788
Q ss_pred HHHHcCc
Q 036525 152 KANEIGL 158 (783)
Q Consensus 152 ~a~~~g~ 158 (783)
++.+.|+
T Consensus 84 ~~~~~~i 90 (293)
T 3l6u_A 84 EAKKAGI 90 (293)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8888885
No 202
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=64.29 E-value=10 Score=41.14 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS 144 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~ 144 (783)
..+.++++.+|.+++.||+....+. ...+.+.+.|++.|+++.. ..+....+.+.+...+..+++ ++|+||..|.+.
T Consensus 80 ~~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS 156 (450)
T 1ta9_A 80 TRSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK 156 (450)
T ss_dssp GGHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH
T ss_pred HHHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH
Confidence 3466777778866998888655443 5788889999999988753 334434454566666666677 999999776654
Q ss_pred --hHHHHHHHHHHcCccccceEEEEeC
Q 036525 145 --LGSRIFEKANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 145 --~~~~~~~~a~~~g~~~~~~~~i~~~ 169 (783)
|+..++... .| ..++-|-|.
T Consensus 157 viD~AK~iA~~--~g---iP~I~IPTT 178 (450)
T 1ta9_A 157 TMDSAKYIAHS--MN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHH--TT---CCEEEEESS
T ss_pred HHHHHHHHHHh--cC---CCEEEEeCC
Confidence 677776532 33 345556555
No 203
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=64.23 E-value=7 Score=39.53 Aligned_cols=48 Identities=13% Similarity=-0.047 Sum_probs=35.6
Q ss_pred ccEEEeeHHHHHHHhhhCCCCCCCCCCCChHHHHHHHHcCeecEEEec
Q 036525 338 TSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGD 385 (783)
Q Consensus 338 ~~~~G~~idl~~~ia~~l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~ 385 (783)
..+.|+.+.+-+.+.++.|++......+....++.+|.+|++|+++++
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~v~~~~~~~~~~~~~~l~~G~~D~~~~~ 62 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSY 62 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEEEEEECCSSTTHHHHHHHHTSCSEEEEC
T ss_pred cccHHHHHHHHcChHHHcCCcEEEecCCCCchHHHHHHCCCCCEEecC
Confidence 446688888888888888876222222345589999999999999887
No 204
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=64.15 E-value=19 Score=35.49 Aligned_cols=78 Identities=6% Similarity=0.025 Sum_probs=58.3
Q ss_pred CeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHH
Q 036525 76 WREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKA 153 (783)
Q Consensus 76 w~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a 153 (783)
-++|+++..+ +.|...+...+.+++++.|..+..... ..+...-...+..+.+.++|.||+..... ...++.+
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA---NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC---TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 4678888864 557788899999999999998865432 22333445677888889999999887665 6777788
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 88775
No 205
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=63.91 E-value=19 Score=35.85 Aligned_cols=84 Identities=4% Similarity=-0.025 Sum_probs=53.1
Q ss_pred HHHcCCeEEEEEEEe----CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhH
Q 036525 71 IKAFGWREAVPIYVD----NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLG 146 (783)
Q Consensus 71 l~~~gw~~vaii~~d----~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~ 146 (783)
|+.-.-.+|+++..+ +.|.....+.+.+++++.|.++.... ...+.......+..+.+.++|.||+.......
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 90 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV 90 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh
Confidence 433344689998854 56778889999999999998875432 22233344566777778899998887653322
Q ss_pred HHHHHHHHH-cCc
Q 036525 147 SRIFEKANE-IGL 158 (783)
Q Consensus 147 ~~~~~~a~~-~g~ 158 (783)
..+..+.+ .|+
T Consensus 91 -~~~~~l~~~~~i 102 (296)
T 3brq_A 91 -DEIDDIIDAHSQ 102 (296)
T ss_dssp -HHHHHHHHTCSS
T ss_pred -HHHHHHHhcCCC
Confidence 34566666 664
No 206
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=63.67 E-value=9.6 Score=38.77 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=40.8
Q ss_pred ccchhHHHHHHHhhhcc--cccccccchh------hhHHHHHHHHHHHHHHhhhhhhhee
Q 036525 454 QVGTSFWFSFSTMVFSQ--RERVISNLAR------FVVIVWCFVVLILTQSYTASLTSLL 505 (783)
Q Consensus 454 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R------~l~~~w~l~~lil~s~Yta~L~s~L 505 (783)
.+.+++|+++.++...| ...|.+..+| ++.++|+++++.+.+...+.+...+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~ 283 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL 283 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998776 3356666666 5999999999988888777666555
No 207
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=63.35 E-value=15 Score=36.60 Aligned_cols=79 Identities=6% Similarity=0.048 Sum_probs=55.4
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a 153 (783)
++|+++.. ++.|.....+.+++++++.|.++..... ..+.......+..+.+.++|.||+..... .....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 47888885 4678888899999999999998865331 22223445567777788999988875433 334567777
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77774
No 208
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=63.17 E-value=19 Score=36.81 Aligned_cols=85 Identities=5% Similarity=-0.023 Sum_probs=57.5
Q ss_pred HHHcCCeEEEEEEEe----CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhH
Q 036525 71 IKAFGWREAVPIYVD----NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLG 146 (783)
Q Consensus 71 l~~~gw~~vaii~~d----~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~ 146 (783)
++.-.-+.++++..+ +.|...+...+.+++++.|..+..... ..+...-...+..+.+.+.|.||+.......
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 132 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV 132 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCSSSCH
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCCh
Confidence 333345689999865 557778899999999999998865431 2222344456778888899999987655444
Q ss_pred HHHHHHHHHcCc
Q 036525 147 SRIFEKANEIGL 158 (783)
Q Consensus 147 ~~~~~~a~~~g~ 158 (783)
..+...+.+.|+
T Consensus 133 ~~~~~~~~~~~i 144 (338)
T 3dbi_A 133 DEIDDIIDAHSQ 144 (338)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHHcCCC
Confidence 556666777764
No 209
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=61.30 E-value=8.9 Score=37.78 Aligned_cols=79 Identities=14% Similarity=0.044 Sum_probs=57.1
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
+.|+++..+ +.|...+.+.+.+++++.|..+..... ..+.......+..+.+.++|.||+..........++++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 578888854 567788899999999999998865432 223334556778888889999988765433355667777
Q ss_pred HcCc
Q 036525 155 EIGL 158 (783)
Q Consensus 155 ~~g~ 158 (783)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7775
No 210
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=61.12 E-value=15 Score=37.27 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=47.0
Q ss_pred cCccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhhee
Q 036525 452 KHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLL 505 (783)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~L 505 (783)
...+.+++||++.++...| ...|.+..+|++.+++.++++.+.....+.+...+
T Consensus 113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 113 AWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998776 44789999999999999999999999998887766
No 211
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.54 E-value=69 Score=26.24 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=65.5
Q ss_pred EEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc
Q 036525 53 FFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM 132 (783)
Q Consensus 53 ~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~ 132 (783)
+|-+..+|...-+.+++-++..|. +|.++|+|.+-- ....-.+++++.|..|... ....||..-+..|-..
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqdek--rrrerleefekqgvdvrtv------edkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDEK--RRRERLEEFEKQGVDVRTV------EDKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCHH--HHHHHHHHHHTTTCEEEEC------CSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchHH--HHHHHHHHHHHcCCceeee------ccHHHHHHHHHHHHHh
Confidence 455666777777888888888886 678899776532 2233345677889877432 2456899888887544
Q ss_pred --CceEEEEEc-Ch-hhHHHHHHHHHHcCc
Q 036525 133 --QTRVFIVHK-LP-SLGSRIFEKANEIGL 158 (783)
Q Consensus 133 --~~dvii~~~-~~-~~~~~~~~~a~~~g~ 158 (783)
+-|++++.+ .. .-...|+..|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 345555443 33 347889999999995
No 212
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=60.14 E-value=33 Score=31.36 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=49.2
Q ss_pred cCCeEEEEEEEeCCcCC---cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcCh
Q 036525 74 FGWREAVPIYVDNQYGE---AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKLP 143 (783)
Q Consensus 74 ~gw~~vaii~~d~~~G~---~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~~ 143 (783)
+.--+|+||...|+-|+ .....+.+.+++.|.++.....++. +.+++...+.+..+ .++|+||..+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34468999998777653 3357788899999999988777762 34477777777664 378999988644
No 213
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=59.81 E-value=14 Score=36.87 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=56.0
Q ss_pred cCCeEEEEEEEe-------CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhH
Q 036525 74 FGWREAVPIYVD-------NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLG 146 (783)
Q Consensus 74 ~gw~~vaii~~d-------~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~ 146 (783)
-+-++|+++..+ +.|...+.+.+.+++++.|..+... ............+..+.+.++|.||+......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~- 81 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN- 81 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-
Confidence 344688888866 5677888999999999999887542 22222233456677788889999988654432
Q ss_pred HHHHHHHHHcCc
Q 036525 147 SRIFEKANEIGL 158 (783)
Q Consensus 147 ~~~~~~a~~~g~ 158 (783)
...++.+.+.|+
T Consensus 82 ~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 DRIIQYLHEQNF 93 (292)
T ss_dssp CHHHHHHHHTTC
T ss_pred hHHHHHHHHCCC
Confidence 256777777775
No 214
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=58.71 E-value=23 Score=35.50 Aligned_cols=79 Identities=8% Similarity=0.130 Sum_probs=55.2
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCc-eEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDT-RVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEK 152 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~-~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~ 152 (783)
++|+++.. ++.|.......+++++++.|. ++..... ..+.......+..+.+.++|.||+..... .....+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 46888875 456777889999999999997 7754321 22223445667777788999998876443 34567788
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 887774
No 215
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=57.93 E-value=11 Score=37.71 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=55.0
Q ss_pred HHHHHcCCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhH
Q 036525 69 AIIKAFGWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLG 146 (783)
Q Consensus 69 ~~l~~~gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~ 146 (783)
+-|+.-.-++|+++..+ +.|...+.+.+.+++++.|.++..... ..+.......+..+.+.++|.||+.......
T Consensus 13 r~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 13 AGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp -----CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred HHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 33444445689998853 567778899999999999988865331 2222334556777888899998887644322
Q ss_pred HHHHHHHHHcCc
Q 036525 147 SRIFEKANEIGL 158 (783)
Q Consensus 147 ~~~~~~a~~~g~ 158 (783)
..+++.+.+.|+
T Consensus 90 ~~~~~~~~~~~i 101 (293)
T 2iks_A 90 HPFYQRWANDPF 101 (293)
T ss_dssp CHHHHTTTTSSS
T ss_pred HHHHHHHHhCCC
Confidence 335556666664
No 216
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=57.42 E-value=11 Score=37.93 Aligned_cols=87 Identities=10% Similarity=-0.009 Sum_probs=56.0
Q ss_pred HHHHHHcCCeEEEEEEEe-------CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEE
Q 036525 68 TAIIKAFGWREAVPIYVD-------NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVH 140 (783)
Q Consensus 68 ~~~l~~~gw~~vaii~~d-------~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~ 140 (783)
++-|+.-.-+.|+++..+ +.|...+...+.+++++.|..+... ............+..+.+.+.|.||+.
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 334444455789999876 5677888999999999999887542 222222234556777888899999887
Q ss_pred cChhhHHHHHHHHHHcCc
Q 036525 141 KLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 141 ~~~~~~~~~~~~a~~~g~ 158 (783)
..... ...+..+.+.|+
T Consensus 91 ~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SCBTT-CHHHHHHHHTTC
T ss_pred CCcCC-cHHHHHHHHcCC
Confidence 54432 256677777775
No 217
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=57.41 E-value=12 Score=38.06 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=55.5
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a 153 (783)
++|+++.. ++.|.....+.+++++++.|.++.... +...+...-...+..+.+.++|.|++..... .....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57888874 456778888999999999998775321 1122223445667778888999988865443 346678888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
++.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 88885
No 218
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=57.35 E-value=22 Score=35.42 Aligned_cols=79 Identities=6% Similarity=-0.048 Sum_probs=54.4
Q ss_pred CeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHH
Q 036525 76 WREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKA 153 (783)
Q Consensus 76 w~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a 153 (783)
-+.|+++..+ +.|...+...+++++++.|..+.... ...+.......+..+.+.++|.||+...... ...++.+
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l 91 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEF 91 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHH
Confidence 3578888864 66778889999999999999876532 1223334456677788889999888764322 3355666
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 92 ~~~~i 96 (289)
T 2fep_A 92 KRSPV 96 (289)
T ss_dssp HHSSS
T ss_pred HhcCC
Confidence 67774
No 219
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=57.24 E-value=25 Score=35.97 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=54.5
Q ss_pred eEEEEEEEe---CCcCCcchHHHHHHHhhCCceEeEEEecCC-CCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHH
Q 036525 77 REAVPIYVD---NQYGEAMIPSLTDALHAIDTRVPYRSVISP-LATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 77 ~~vaii~~d---~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~-~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
++|+++..+ +.|.......+.+++++.|.++.....-.. ..+...-...+..+.+.++|.||+..........+++
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 478888865 577788899999999999987654421111 0122334466777778899999985443333456677
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 777774
No 220
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=56.92 E-value=12 Score=37.56 Aligned_cols=81 Identities=7% Similarity=0.034 Sum_probs=57.7
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh-hhHHHHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP-SLGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~-~~~~~~~~~a 153 (783)
.+|+++..+ +.|...+.+.+++++++.|.++.....-.. .+.......+..+.+.++|.||+.... ......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 467888754 678888999999999999998865431100 133345567788888999988886543 3446678888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 88885
No 221
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=56.87 E-value=38 Score=31.25 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=48.3
Q ss_pred cCCeEEEEEEEeCC----------cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc-CceEEEEEcC
Q 036525 74 FGWREAVPIYVDNQ----------YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFIVHKL 142 (783)
Q Consensus 74 ~gw~~vaii~~d~~----------~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~-~~dvii~~~~ 142 (783)
+.--+|+||...|+ .-......+.+.+++.|.++.....++. +.+++...+.+..+. ++|+||..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 44568888886652 2244567888999999999988777763 344777778776654 5999998864
Q ss_pred h
Q 036525 143 P 143 (783)
Q Consensus 143 ~ 143 (783)
.
T Consensus 91 ~ 91 (178)
T 2pjk_A 91 T 91 (178)
T ss_dssp C
T ss_pred C
Confidence 3
No 222
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=56.69 E-value=28 Score=32.41 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=47.9
Q ss_pred CCeEEEEEEEeCCc----CCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 75 GWREAVPIYVDNQY----GEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 75 gw~~vaii~~d~~~----G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
.--+|+||...|+- -......+.+.+++.|.++.....++. +.+.+...+.+..+.++|+|+..+-.
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~DlVIttGGt 99 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA--DEVDIRNALNTAVIGGVDLVVSVGGT 99 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS--CHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 34578888865442 244567888899999999988877763 34467777777655679999988643
No 223
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=55.24 E-value=24 Score=35.30 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=57.8
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh-hhHHHHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP-SLGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~-~~~~~~~~~a 153 (783)
.+|+++..+ +.|.....+.+++++++.|.++..... .+.......+..+.+.++|.||+.... ......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 467888754 567788899999999999988864432 233455667888888899998887654 3456678888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88885
No 224
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=55.23 E-value=54 Score=31.95 Aligned_cols=94 Identities=6% Similarity=-0.051 Sum_probs=69.4
Q ss_pred HHHHHHHHHHcCCeEEEEEEEe------------CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc
Q 036525 64 VGAITAIIKAFGWREAVPIYVD------------NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT 131 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d------------~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~ 131 (783)
....++.++..|.+.|=+...+ ........+.+++.+++.|+++....... +...+++...+...+.
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~~~~~~~~~~i~~A~~ 102 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYV-AEKSSDWEKMFKFAKA 102 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEEC-CSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccC-CccHHHHHHHHHHHHH
Confidence 4556777888999888776422 11223347889999999999987765442 3344578888888888
Q ss_pred cCceEEEEEcChhhHHHHHHHHHHcCc
Q 036525 132 MQTRVFIVHKLPSLGSRIFEKANEIGL 158 (783)
Q Consensus 132 ~~~dvii~~~~~~~~~~~~~~a~~~g~ 158 (783)
.+++.|+++........+...|++.|+
T Consensus 103 lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 103 MDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred cCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 999999998766777888888888886
No 225
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=55.12 E-value=21 Score=35.75 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=55.2
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a 153 (783)
.+|+++.. ++.|.....+.+++++++.|.++.... +...+.......+.++.+.++|.||+..... .....++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 57888874 456788889999999999998875321 1122333445667778788999988876543 344667788
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87774
No 226
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=54.90 E-value=30 Score=36.27 Aligned_cols=85 Identities=7% Similarity=-0.079 Sum_probs=58.6
Q ss_pred HHHHHHHHcCC---eEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC---ceEEEE
Q 036525 66 AITAIIKAFGW---REAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ---TRVFIV 139 (783)
Q Consensus 66 ai~~~l~~~gw---~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~---~dvii~ 139 (783)
.+.++++.++. +++.+|....-... .+.+.+++.|+++.....+..+++.+.+...+..+++.+ +|+||-
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIa 115 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVG 115 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 36777777763 77777775433322 467788877887755455566677777888888888777 999998
Q ss_pred EcChh--hHHHHHHHHH
Q 036525 140 HKLPS--LGSRIFEKAN 154 (783)
Q Consensus 140 ~~~~~--~~~~~~~~a~ 154 (783)
.+.+. |+..++....
T Consensus 116 vGGGS~iD~AK~iA~~~ 132 (375)
T 3rf7_A 116 LGGGSTMDLAKAVSLML 132 (375)
T ss_dssp EESHHHHHHHHHHHHHT
T ss_pred eCCcHHHHHHHHHHHHH
Confidence 87775 6676665543
No 227
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=54.64 E-value=34 Score=31.08 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=45.5
Q ss_pred EEEEEEEeCC--cC---CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc-CceEEEEEcCh
Q 036525 78 EAVPIYVDNQ--YG---EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFIVHKLP 143 (783)
Q Consensus 78 ~vaii~~d~~--~G---~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~-~~dvii~~~~~ 143 (783)
+|+||...|+ .| ......+.+.+++.|.++.....++. +.+.+...+.+..+. ++|+||..+-.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPD--EPPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 6777775554 22 34457888999999999988777763 344777888777654 78999988644
No 228
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=54.34 E-value=22 Score=35.75 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=54.6
Q ss_pred HHHHHHcCCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhh
Q 036525 68 TAIIKAFGWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSL 145 (783)
Q Consensus 68 ~~~l~~~gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~ 145 (783)
++-|+.-.-+.|+++..+ +.|...+...+.+++++.|..+..... ..+...-...+..+.+.+.|.||+......
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI---DAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC---CSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 334444444678888854 567788999999999999998865432 222334556778888899999998765443
Q ss_pred HHHHHHHHHHcCc
Q 036525 146 GSRIFEKANEIGL 158 (783)
Q Consensus 146 ~~~~~~~a~~~g~ 158 (783)
....+..+.+ |+
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2225666666 74
No 229
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=53.90 E-value=32 Score=35.02 Aligned_cols=63 Identities=8% Similarity=0.076 Sum_probs=47.3
Q ss_pred eEEEEEEE----eC-CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 77 REAVPIYV----DN-QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 77 ~~vaii~~----d~-~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
.+|++|++ ++ .|.....+.+++.+++.|.++..... . ...+....+..+.+.+.|.||+.+..
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~--~--~~~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTA--S--TDAEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEEC--C--SGGGHHHHHHHHHHTTCSEEEEESTT
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeC--C--CHHHHHHHHHHHHHcCCCEEEECChh
Confidence 57899986 23 57777788999999999988766543 1 23456677888888999999987643
No 230
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=52.98 E-value=44 Score=32.52 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc
Q 036525 64 VGAITAIIKAFGWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK 141 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~ 141 (783)
....++.++..|.+.|=+.... .+......+.+++.+++.|+++........ ...+.+...+...+..+++.|+++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecC
Confidence 4567777888999888765421 122234467899999999999876543221 3445777888888888999998877
Q ss_pred ChhhHHHHHHHHHHcCc
Q 036525 142 LPSLGSRIFEKANEIGL 158 (783)
Q Consensus 142 ~~~~~~~~~~~a~~~g~ 158 (783)
.......+...|++.|+
T Consensus 111 ~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 111 NYELLPYVDKKVKEYDF 127 (257)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66778888888888886
No 231
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=52.70 E-value=24 Score=34.76 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=53.5
Q ss_pred CeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHH-H
Q 036525 76 WREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFE-K 152 (783)
Q Consensus 76 w~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~-~ 152 (783)
-+.|+++..+ +.|...+.+.+.+++++.|..+..... ..+.......+..+.+.++|.||+.... ...++ .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~ 81 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENT 81 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHH
Confidence 3578888864 667788899999999999998865332 2233345567778888999999997732 33466 7
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 777775
No 232
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=52.63 E-value=22 Score=34.26 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEe
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVP 108 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~ 108 (783)
++.++.+...+-++|+++.. .+... ...+++.+++.|+++.
T Consensus 104 ~a~~~~~~~~~~~rigvlaT--~~T~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 104 DAVAEEILKRGVRKVLLLGT--KTTMT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp HHHHHHHHHTTCCEEEEESS--TTTTS-CHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEeC--HHHHh-hhHHHHHHHHCCCEEE
Confidence 44555555567789999974 33222 3456788888887763
No 233
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=52.60 E-value=12 Score=39.27 Aligned_cols=95 Identities=7% Similarity=-0.049 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS 144 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~ 144 (783)
+.+.++++.+|.+++.+|+....+| ..+.+.+.|+ ..+++. .+.++++.+.+...+..+++.++|+||-.+.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~---~~~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE---VAIWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC---CSEEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC---CCEEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 4577888899999998888554332 2333333333 223333 234455666788888888999999999887775
Q ss_pred --hHHHHHHHHHHcCccccceEEEEeCC
Q 036525 145 --LGSRIFEKANEIGLMNKGCVWIMTDG 170 (783)
Q Consensus 145 --~~~~~~~~a~~~g~~~~~~~~i~~~~ 170 (783)
|+..++... .+ ..++-|-|..
T Consensus 100 ~iD~aK~iA~~--~~---~P~i~IPTTa 122 (364)
T 3iv7_A 100 TIGLAKAIAMT--TA---LPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred HHHHHHHHHhc--cC---CCEEEEcCCc
Confidence 666666443 33 3455555554
No 234
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=52.08 E-value=26 Score=34.86 Aligned_cols=84 Identities=7% Similarity=0.015 Sum_probs=52.5
Q ss_pred HHHHHcCCeEEEEEEE-eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHH
Q 036525 69 AIIKAFGWREAVPIYV-DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGS 147 (783)
Q Consensus 69 ~~l~~~gw~~vaii~~-d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~ 147 (783)
+-|+.-.-+.|+++.. ++.|...+.+.+++++++.|..+.....-. .. +-...+..+.+.+.|.||+.......
T Consensus 5 r~L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~-~~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (289)
T 3k9c_A 5 QKLRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP---SR-AEKVAVQALMRERCEAAILLGTRFDT- 79 (289)
T ss_dssp --------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT---TB-CHHHHHHHHTTTTEEEEEEETCCCCH-
T ss_pred hhhhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC---CH-HHHHHHHHHHhCCCCEEEEECCCCCH-
Confidence 3344444567888872 245667888999999999999887654321 11 24567778888899999988654433
Q ss_pred HHHHHHHHcCc
Q 036525 148 RIFEKANEIGL 158 (783)
Q Consensus 148 ~~~~~a~~~g~ 158 (783)
..++.+.+ |+
T Consensus 80 ~~~~~~~~-~i 89 (289)
T 3k9c_A 80 DELGALAD-RV 89 (289)
T ss_dssp HHHHHHHT-TS
T ss_pred HHHHHHHc-CC
Confidence 45556655 64
No 235
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=51.70 E-value=81 Score=27.46 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=55.5
Q ss_pred EEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh----hHHHHHHHH
Q 036525 78 EAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS----LGSRIFEKA 153 (783)
Q Consensus 78 ~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~----~~~~~~~~a 153 (783)
+|.+.....+...-....+...|+..|.+|.+--.. .+ ....+..+++.++|+|.+++... ....++++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~---~p---~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL---SP---QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE---EC---HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC---CC---HHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 555555555555555667778889999999865431 12 23455666678899999887543 356677788
Q ss_pred HHcCccccceEEEEeCC
Q 036525 154 NEIGLMNKGCVWIMTDG 170 (783)
Q Consensus 154 ~~~g~~~~~~~~i~~~~ 170 (783)
++.|.. .-.+|++...
T Consensus 79 ~~~g~~-~i~v~vGG~~ 94 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGNI 94 (137)
T ss_dssp HHTTCT-TCEEEEEESC
T ss_pred HhcCCC-CCEEEEECCC
Confidence 888753 3345666543
No 236
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=51.41 E-value=38 Score=33.43 Aligned_cols=70 Identities=7% Similarity=-0.117 Sum_probs=41.2
Q ss_pred ecCChhHHHHHHhcCcccCceeEEecch-hHHHHHHhhcCCceEEecc-------c--ccccceEEEecCC-CC-ChHHH
Q 036525 536 VYNSPEDCHELFQKGSANGGIAAALDEI-PYMKLLIGQHCSKYTMIEP-------K--FKTAGFGFVFPLH-SP-LVHDV 603 (783)
Q Consensus 536 ~~~~~~~~~~~l~~g~~~~g~~a~~~~~-~~~~~~~~~~c~~l~~v~~-------~--~~~~~~~~~~~k~-sp-l~~~i 603 (783)
.+.+..+..++|.+|+ +||++... +... +. +. + ++.+.+ . ......+++++++ .| +.+.|
T Consensus 129 ~~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~-~~-g-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~ 200 (280)
T 1zbm_A 129 VEMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YA-DY-G-LKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEF 200 (280)
T ss_dssp EECCGGGHHHHHHTTS----SSEEEECSGGGGT-GG-GG-T-CEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHH
T ss_pred EecCHHHHHHHHHcCC----CCEEEEechHHhH-HH-hc-C-CeEeccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHH
Confidence 3456688999999999 99987443 4433 22 22 1 222211 0 1111236788887 44 77777
Q ss_pred HHHHHhhhcC
Q 036525 604 SKAILNVTEG 613 (783)
Q Consensus 604 n~~il~l~e~ 613 (783)
++++.+..+.
T Consensus 201 ~~a~~~a~~~ 210 (280)
T 1zbm_A 201 LRAMRESIAF 210 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 237
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=51.36 E-value=40 Score=30.32 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=52.6
Q ss_pred eEEEEEEEeCCcC--CcchHHHHHHHhhCCceEeEEEecCCCCChh-HHHHHHHHHhccCceEEEEEcChh--hH--HHH
Q 036525 77 REAVPIYVDNQYG--EAMIPSLTDALHAIDTRVPYRSVISPLATDD-QIEKELYKLFTMQTRVFIVHKLPS--LG--SRI 149 (783)
Q Consensus 77 ~~vaii~~d~~~G--~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~-d~~~~l~~l~~~~~dvii~~~~~~--~~--~~~ 149 (783)
+++.|+| .+.+| +.+++.+.+.+++.|.++..... ... +....+..+. ..|.||+.++.- .. ..+
T Consensus 5 ~kv~IvY-~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~-----~~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~ 76 (159)
T 3fni_A 5 TSIGVFY-VSEYGYSDRLAQAIINGITKTGVGVDVVDL-----GAAVDLQELRELVG--RCTGLVIGMSPAASAASIQGA 76 (159)
T ss_dssp CEEEEEE-CTTSTTHHHHHHHHHHHHHHTTCEEEEEES-----SSCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHH
T ss_pred CEEEEEE-ECCChHHHHHHHHHHHHHHHCCCeEEEEEC-----cCcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHH
Confidence 5888888 44556 56788888889888887644332 122 3333444443 467777765432 22 356
Q ss_pred HHHHHHcCccccceEEEEeCCcc
Q 036525 150 FEKANEIGLMNKGCVWIMTDGMT 172 (783)
Q Consensus 150 ~~~a~~~g~~~~~~~~i~~~~~~ 172 (783)
+.......+.......+++.+|.
T Consensus 77 l~~l~~~~~~~k~va~fgs~g~~ 99 (159)
T 3fni_A 77 LSTILGSVNEKQAVGIFETGGGD 99 (159)
T ss_dssp HHHHHHHCCTTSEEEEECCSSSC
T ss_pred HHHHHhhcccCCEEEEEEcCCCC
Confidence 66666655555555566666665
No 238
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.89 E-value=21 Score=24.57 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhcccc
Q 036525 663 IIFLAVFVHQHRNVLR 678 (783)
Q Consensus 663 ~vfl~E~~~~~~~~~r 678 (783)
+++++-++++||++.+
T Consensus 27 i~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 27 VALGIGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHhhhhHhhc
Confidence 3344445555555544
No 239
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=50.28 E-value=22 Score=34.93 Aligned_cols=80 Identities=9% Similarity=-0.029 Sum_probs=55.9
Q ss_pred EEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC-ceEEEEEcCh-hhHHHHHHHH
Q 036525 78 EAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFIVHKLP-SLGSRIFEKA 153 (783)
Q Consensus 78 ~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~-~dvii~~~~~-~~~~~~~~~a 153 (783)
+|+++.. ++.|.....+.+++++++.|.++..... ....+.......+..+.+.+ +|.||+.... ......++++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRST-KDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCC-SSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 5777774 4667888899999999999988754321 01122233446677777888 9999987643 4556778888
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88885
No 240
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=50.25 E-value=34 Score=31.10 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=45.7
Q ss_pred eEEEEEEEeCCc--C---CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 77 REAVPIYVDNQY--G---EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 77 ~~vaii~~d~~~--G---~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
.+|+||...|+- | ......+.+.+++.|.++.....++. + +.+...+.+..+.++|+|+..+-.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D--d-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD--G-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS--S-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC--H-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 477888765542 2 34567888899999999987777652 3 477777777665679999988643
No 241
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=49.74 E-value=23 Score=35.29 Aligned_cols=79 Identities=9% Similarity=-0.019 Sum_probs=53.5
Q ss_pred CeEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHH---HHHHHhccCceEEEEEcChhhHHHHH
Q 036525 76 WREAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEK---ELYKLFTMQTRVFIVHKLPSLGSRIF 150 (783)
Q Consensus 76 w~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~---~l~~l~~~~~dvii~~~~~~~~~~~~ 150 (783)
-++|+++.. ++.|.....+.+.+++++.|..+.... ...+...-.. .+..+.+.++|.||+...... ...+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 83 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVAT---GCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDL 83 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEEC---CCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHH
Confidence 357888875 356778889999999999998875432 1222223344 677788889999988764433 3455
Q ss_pred HHHHHcCc
Q 036525 151 EKANEIGL 158 (783)
Q Consensus 151 ~~a~~~g~ 158 (783)
+.+.+.|+
T Consensus 84 ~~l~~~~i 91 (290)
T 2rgy_A 84 DELHRMHP 91 (290)
T ss_dssp HHHHHHCS
T ss_pred HHHhhcCC
Confidence 66666674
No 242
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=49.66 E-value=41 Score=34.06 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=53.8
Q ss_pred CeEEEEEEEe-CCcCCcchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhh-HHHHHHH
Q 036525 76 WREAVPIYVD-NQYGEAMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSL-GSRIFEK 152 (783)
Q Consensus 76 w~~vaii~~d-~~~G~~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~-~~~~~~~ 152 (783)
-.+|+++..+ +.|.......+.+++++. |.++..... ..+.......+..+.+.++|.||+...... ....+++
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 3578888754 445566788888999988 988765431 222234455677777889999988765433 3456777
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 777774
No 243
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=49.34 E-value=27 Score=35.57 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=54.9
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC--ceEEEEEcChhh-HHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFIVHKLPSL-GSRIFE 151 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~--~dvii~~~~~~~-~~~~~~ 151 (783)
++|+++.. ++.|...+...+++++++.|.++..... ..+.......+..+.+.+ +|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 47888885 4567778889999999999988765431 222233445677777788 999888765443 446777
Q ss_pred HHHHcCc
Q 036525 152 KANEIGL 158 (783)
Q Consensus 152 ~a~~~g~ 158 (783)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7777774
No 244
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=48.99 E-value=32 Score=34.05 Aligned_cols=79 Identities=6% Similarity=0.105 Sum_probs=53.8
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh-hhHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP-SLGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~-~~~~~~~~~a 153 (783)
++|+++.. ++.|...+.+.+.+++++.|..+..... ..+...-...+..+.+.++|.||+.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 46788875 4567778899999999999988765431 2222233456777778899998886543 3334567778
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 78775
No 245
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=48.12 E-value=33 Score=33.62 Aligned_cols=79 Identities=8% Similarity=0.065 Sum_probs=53.6
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a 153 (783)
+.|+++.. ++.|.......+.+++++.|.++..... ..+...-...+..+.+.++|.||+..... .....++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 57888875 3667778899999999999988765321 12222334566777788999988865433 233567777
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77774
No 246
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=47.64 E-value=18 Score=36.06 Aligned_cols=80 Identities=8% Similarity=-0.022 Sum_probs=56.4
Q ss_pred CCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHH
Q 036525 75 GWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 75 gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
.-++|+++..+ +.|...+...+++++++.|.++..... ..+.......+..+.+.++|.||+..... ....++.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 44688888854 556778899999999999998865432 22333455677788889999999876544 3455666
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 83 ~~~~~i 88 (291)
T 3egc_A 83 ELPKTF 88 (291)
T ss_dssp SSCTTS
T ss_pred hhccCC
Confidence 666664
No 247
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=47.57 E-value=41 Score=34.96 Aligned_cols=77 Identities=6% Similarity=0.097 Sum_probs=53.6
Q ss_pred CCeEEEEEEEe----CCcCCcchHHHHHHHhhCC--ceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHH
Q 036525 75 GWREAVPIYVD----NQYGEAMIPSLTDALHAID--TRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSR 148 (783)
Q Consensus 75 gw~~vaii~~d----~~~G~~~~~~~~~~l~~~g--~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~ 148 (783)
.-.+|++|+.+ ..|.....+.+++..++.| +++.+.+..+ ...++...+..+.+.+.|+||..+.. ....
T Consensus 25 ~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~---~~~d~~~~l~~l~~~g~d~Ii~~g~~-~~~~ 100 (356)
T 3s99_A 25 EKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVA---EGADAERSIKRIARAGNKLIFTTSFG-YMDP 100 (356)
T ss_dssp -CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCC---TTHHHHHHHHHHHHTTCSEEEECSGG-GHHH
T ss_pred CCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCC---CHHHHHHHHHHHHHCCCCEEEECCHH-HHHH
Confidence 34689999963 3577778888998889988 7766544322 23478889999999999988876543 3334
Q ss_pred HHHHHHH
Q 036525 149 IFEKANE 155 (783)
Q Consensus 149 ~~~~a~~ 155 (783)
+.+.|.+
T Consensus 101 ~~~vA~~ 107 (356)
T 3s99_A 101 TVKVAKK 107 (356)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 5555554
No 248
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=47.46 E-value=33 Score=34.55 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=53.4
Q ss_pred EEEEEEEeCC-cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHHHH
Q 036525 78 EAVPIYVDNQ-YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKANE 155 (783)
Q Consensus 78 ~vaii~~d~~-~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a~~ 155 (783)
+|+++..+.. |.....+.+++++++.|.++.... +...+.......+..+.+.++|.||+..... .....++++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777774322 778889999999999998875432 1122223445667777788999998865433 34466778888
Q ss_pred cCc
Q 036525 156 IGL 158 (783)
Q Consensus 156 ~g~ 158 (783)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 775
No 249
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=47.43 E-value=28 Score=34.97 Aligned_cols=79 Identities=5% Similarity=0.009 Sum_probs=54.0
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhh-HHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSL-GSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~-~~~~~~~a 153 (783)
.+|+++.. ++.|.......+++++++.|..+..... ..+.......+..+.+.++|.||+...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 47788875 4567777889999999999988765431 222234455677777889999988765432 24566777
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77774
No 250
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=47.02 E-value=47 Score=33.84 Aligned_cols=81 Identities=10% Similarity=0.002 Sum_probs=55.4
Q ss_pred cCCeEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHH
Q 036525 74 FGWREAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFE 151 (783)
Q Consensus 74 ~gw~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~ 151 (783)
-.-+.|+++.. ++.|...+...+.+++++.|..+.... ...+...-...+..+.+.+.|.||+....... ..+.
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~ 135 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGN---SHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFER 135 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHH
Confidence 34467888885 466788899999999999999886533 12233345567778888899998887644322 4566
Q ss_pred HHHHcCc
Q 036525 152 KANEIGL 158 (783)
Q Consensus 152 ~a~~~g~ 158 (783)
.+.+.|+
T Consensus 136 ~l~~~~i 142 (339)
T 3h5o_A 136 ILSQHAL 142 (339)
T ss_dssp HHHHTTC
T ss_pred HHhcCCC
Confidence 6777774
No 251
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=46.99 E-value=51 Score=34.71 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=62.8
Q ss_pred HHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCC---CCChhHHHHHHHHHhccCc---eEEEEEcCh
Q 036525 70 IIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISP---LATDDQIEKELYKLFTMQT---RVFIVHKLP 143 (783)
Q Consensus 70 ~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~---~~~~~d~~~~l~~l~~~~~---dvii~~~~~ 143 (783)
+++.++.+++.+|+...-+. ...+.+.+.|++.|+++.... ++. ..+.+.+...+..+++.++ |+||..+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 44455778999888665554 377888999999998764322 332 2244567777777877777 688877766
Q ss_pred h--hHHHHHHHHHHcCccccceEEEEeC
Q 036525 144 S--LGSRIFEKANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 144 ~--~~~~~~~~a~~~g~~~~~~~~i~~~ 169 (783)
. |...++......| ..++-|-|.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 5 6777776555555 345555554
No 252
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=46.76 E-value=47 Score=32.73 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=53.1
Q ss_pred CCeEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHH
Q 036525 75 GWREAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 75 gw~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
.-++|+++.. ++.|.....+.+++++++.|..+.... ...+...-...+..+.+.++|.||+....... ..++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN---TESDLARSRSCLTLLSGKMVDGVITMDALSEL-PELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHHH
Confidence 3457888885 466778889999999999999876543 12222334456777888899999887543322 34555
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+. .|+
T Consensus 83 l~-~~i 87 (285)
T 3c3k_A 83 II-GAF 87 (285)
T ss_dssp HH-TTS
T ss_pred Hh-cCC
Confidence 55 664
No 253
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=46.52 E-value=26 Score=34.95 Aligned_cols=78 Identities=10% Similarity=-0.042 Sum_probs=54.9
Q ss_pred CeEEEEEEE------eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHH
Q 036525 76 WREAVPIYV------DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRI 149 (783)
Q Consensus 76 w~~vaii~~------d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~ 149 (783)
-+.|+++.. ++.|...+...+.+++++.|..+.....- + .......+..+.+.+.|.||+....... ..
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~--~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDE--P--GEKYQSLIHLVETRRVDALIVAHTQPED-FR 80 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEEC--T--TCCCHHHHHHHHHTCCSEEEECSCCSSC-HH
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCC--C--hhhHHHHHHHHHcCCCCEEEEeCCCCCh-HH
Confidence 467888887 45677788999999999999988765532 1 1233456667777899998887654322 56
Q ss_pred HHHHHHcCc
Q 036525 150 FEKANEIGL 158 (783)
Q Consensus 150 ~~~a~~~g~ 158 (783)
++.+.+.|+
T Consensus 81 ~~~l~~~~i 89 (294)
T 3qk7_A 81 LQYLQKQNF 89 (294)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 677777775
No 254
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=46.41 E-value=88 Score=28.21 Aligned_cols=92 Identities=10% Similarity=-0.029 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecC--C--CCChhHHHHHHHHHh-ccCceEEEEE
Q 036525 66 AITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVIS--P--LATDDQIEKELYKLF-TMQTRVFIVH 140 (783)
Q Consensus 66 ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~--~--~~~~~d~~~~l~~l~-~~~~dvii~~ 140 (783)
.+.+.+...|--..+..| .+..+......+.++|.+.|.++....... . ..+..|+.=.+.-+. ....|.+++.
T Consensus 37 ~l~~~~~~~g~l~~~~~Y-~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLv 115 (165)
T 2qip_A 37 QFWYVATQEKEVVSAKAY-AIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILV 115 (165)
T ss_dssp HHHHHHTTTEEEEEEEEE-ECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEE
T ss_pred HHHHHHhcCCEEEEEEEE-EccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEE
Confidence 444555444433445555 333333566788899999999886532221 1 123335432222221 2567888888
Q ss_pred cChhhHHHHHHHHHHc-Cc
Q 036525 141 KLPSLGSRIFEKANEI-GL 158 (783)
Q Consensus 141 ~~~~~~~~~~~~a~~~-g~ 158 (783)
+.-.|...+++.+++. |.
T Consensus 116 SgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 116 SGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp CCCGGGHHHHHHHHHHHCC
T ss_pred ECChhHHHHHHHHHHHcCc
Confidence 8888999999999994 84
No 255
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=46.25 E-value=33 Score=35.33 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=52.8
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
++|+++..+ +.|...+.+.+.+++++.|..+..... ..+.......+..+.+.++|.||+...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 468888854 567778899999999999988765431 222233455677788889998888765443 24566677
Q ss_pred HcCc
Q 036525 155 EIGL 158 (783)
Q Consensus 155 ~~g~ 158 (783)
+.|+
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 7774
No 256
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=45.92 E-value=30 Score=33.91 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=52.8
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
++|+++.. ++.|...+...+.+++++.|.++.... ...+...-...+..+...++|.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 47888875 355777888999999999998875432 1222334456677888889998888754322 24566676
Q ss_pred HcCc
Q 036525 155 EIGL 158 (783)
Q Consensus 155 ~~g~ 158 (783)
+.|+
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6664
No 257
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=45.90 E-value=81 Score=26.10 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=40.6
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~ 156 (783)
.....+.+.+++.|..|... . +....+..+.+..+|+|++... ..++..++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV-------M--SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE-------S--SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE-------C--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 45777888888888755321 1 3345666777788999999754 44688888888886
No 258
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=45.60 E-value=83 Score=33.13 Aligned_cols=94 Identities=14% Similarity=0.010 Sum_probs=62.0
Q ss_pred HHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhC------CceEeEEEecCC---CCChhHHHHHHHHHhccC--c---eE
Q 036525 71 IKAFGWREAVPIYVDNQYGEAMIPSLTDALHAI------DTRVPYRSVISP---LATDDQIEKELYKLFTMQ--T---RV 136 (783)
Q Consensus 71 l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~------g~~v~~~~~i~~---~~~~~d~~~~l~~l~~~~--~---dv 136 (783)
++.++.+++.+|+....+.. ..+.+.+.|++. |.++.. ..++. ..+.+.+......+++.+ + |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678889998886544332 567777777776 766642 33444 234456777777888888 7 99
Q ss_pred EEEEcChh--hHHHHHHHHHHcCccccceEEEEeC
Q 036525 137 FIVHKLPS--LGSRIFEKANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 137 ii~~~~~~--~~~~~~~~a~~~g~~~~~~~~i~~~ 169 (783)
||..+.+. |...++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 88776654 78888776666663 45556665
No 259
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=45.53 E-value=29 Score=34.40 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=53.3
Q ss_pred cCCeEEEEEEEe--C--CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHH
Q 036525 74 FGWREAVPIYVD--N--QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRI 149 (783)
Q Consensus 74 ~gw~~vaii~~d--~--~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~ 149 (783)
-.-+.|+++..+ + .|...+...+.+++++.|..+..... ..........+..+.+.++|.||+...... ...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 81 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPH---IHAKDSMVPIRYILETGSADGVIISKIEPN-DPR 81 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCB---SSGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHH
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecC---CcchhHHHHHHHHHHcCCccEEEEecCCCC-cHH
Confidence 344688888864 3 67888899999999999988765322 112222334445566789999888754322 245
Q ss_pred HHHHHHcCc
Q 036525 150 FEKANEIGL 158 (783)
Q Consensus 150 ~~~a~~~g~ 158 (783)
++.+.+.|+
T Consensus 82 ~~~l~~~~i 90 (288)
T 3gv0_A 82 VRFMTERNM 90 (288)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhCCC
Confidence 677777775
No 260
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=45.51 E-value=30 Score=35.25 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=52.7
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
++|+++.. ++.|...+...+.+++++.|..+.... ...+...-...+..+.+.++|.||+....... ..++.+.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 57899885 467888899999999999998876532 11122233456677777889988886543322 4566666
Q ss_pred HcCc
Q 036525 155 EIGL 158 (783)
Q Consensus 155 ~~g~ 158 (783)
+.|+
T Consensus 137 ~~~i 140 (332)
T 2hsg_A 137 KSPV 140 (332)
T ss_dssp TSSS
T ss_pred hCCC
Confidence 6664
No 261
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=45.32 E-value=53 Score=30.14 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=41.2
Q ss_pred eEEEEEEEeCCc--C---CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc
Q 036525 77 REAVPIYVDNQY--G---EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK 141 (783)
Q Consensus 77 ~~vaii~~d~~~--G---~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~ 141 (783)
-+|++|...|+- | ......+.+.+++.|+++.....++. +.+.+...+.+..+ .+|+||..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHH-HCSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHh-cCCEEEEcC
Confidence 367777755441 3 34567788888899998887777662 33466666666543 378888775
No 262
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=45.31 E-value=53 Score=30.16 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=43.2
Q ss_pred EEEEEEEeCC-------cC---CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh-ccCceEEEEEcCh
Q 036525 78 EAVPIYVDNQ-------YG---EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFIVHKLP 143 (783)
Q Consensus 78 ~vaii~~d~~-------~G---~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~-~~~~dvii~~~~~ 143 (783)
+|+||...|. .| ....+.+.+.|++.|.+|.....++. +.+.+...+.+.. ..++|+|+..+..
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~D--d~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 6788875431 11 22346788999999999988887762 2346666666554 4578999987644
No 263
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=45.23 E-value=57 Score=33.57 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=47.0
Q ss_pred cCccchhHHHHHHHhhhcc-cc-ccc--ccchhhhHHHHHHHHHHHHHHhhhhhhheeecccc
Q 036525 452 KHQVGTSFWFSFSTMVFSQ-RE-RVI--SNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQL 510 (783)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~~-~~-~~~--s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~ 510 (783)
..++..++||++.++...| +. .|. +..+|+++.+-.+.++++.+.-++-+.+-++.++.
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3578899999999999776 32 343 56799999999999999999988888777765543
No 264
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=45.18 E-value=57 Score=33.29 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=55.5
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~ 154 (783)
+.|+++.. ++.|...+.+.+++++++.|..+.... ...+.......+..+.+.++|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV---TDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE---CTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 47888885 466778889999999999999885433 12233345567778888899999887644332 5666777
Q ss_pred HcCc
Q 036525 155 EIGL 158 (783)
Q Consensus 155 ~~g~ 158 (783)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7775
No 265
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.92 E-value=1.1e+02 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=16.5
Q ss_pred CeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525 51 PYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD 85 (783)
Q Consensus 51 ~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d 85 (783)
.+-.|+.-+....-+.+-.++++++.+-|.++.+|
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvdd 60 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 34445555544444445555555554444444433
No 266
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=44.75 E-value=1.6e+02 Score=29.16 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC-
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL- 142 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~- 142 (783)
...+++..+..|...+.++.+...| .+..+.+...-+..++.|.....+- + .+ ++...+..++|.|++...
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~f-~Gs~~~L~~ir~~v~lPVl~Kdfi~---d--~~--qi~ea~~~GAD~VlLi~a~ 152 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPSF-QGAPEFLTAARQACSLPALRKDFLF---D--PY--QVYEARSWGADCILIIMAS 152 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTT-CCCHHHHHHHHHTSSSCEEEESCCC---S--TH--HHHHHHHTTCSEEEEETTT
T ss_pred HHHHHHHHHHCCCCEEEEecccccc-CCCHHHHHHHHHhcCCCEEECCccC---C--HH--HHHHHHHcCCCEEEEcccc
Confidence 3456666777899999888744444 4667777666666777776544321 1 12 577788999999888763
Q ss_pred --hhhHHHHHHHHHHcCc
Q 036525 143 --PSLGSRIFEKANEIGL 158 (783)
Q Consensus 143 --~~~~~~~~~~a~~~g~ 158 (783)
..+...++..++++||
T Consensus 153 L~~~~l~~l~~~a~~lGl 170 (272)
T 3tsm_A 153 VDDDLAKELEDTAFALGM 170 (272)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 3468889999999997
No 267
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=44.23 E-value=91 Score=25.97 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=39.9
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|..|... . +....+..+++..+|+|++.... .++..++++.++..
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA-------H--NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-------S--SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCcEEEEe-------C--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 45667778888888766421 1 33455666777889999997654 35788888888765
No 268
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=44.14 E-value=46 Score=33.81 Aligned_cols=80 Identities=11% Similarity=-0.006 Sum_probs=53.8
Q ss_pred CCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHH
Q 036525 75 GWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 75 gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
.-++|+++..+ +.|...+...+.+++++.|..+.... ...+.......+..+.+.++|.||+...... ...+..
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN---SDNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE---CCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34689999854 56778889999999999999876542 1222233455677778889999888764222 234555
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 138 l~~~~i 143 (332)
T 2o20_A 138 LKNSRT 143 (332)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 666664
No 269
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=44.00 E-value=32 Score=31.36 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=41.5
Q ss_pred EEEEEEEeCCc--C---CcchHHHHHH----HhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 78 EAVPIYVDNQY--G---EAMIPSLTDA----LHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 78 ~vaii~~d~~~--G---~~~~~~~~~~----l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
+++||...|+- | ......+.+. +++.|.++.....++. +.+.+...+.+..+.++|+|+..+-.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~~DlVittGG~ 79 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQGARFIITAGGT 79 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 67777754443 1 2345678888 8999999887777762 34477777877765568999988643
No 270
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=43.73 E-value=27 Score=34.25 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHH-----HcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCce
Q 036525 61 SSQVGAITAIIK-----AFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTR 135 (783)
Q Consensus 61 ~~~~~ai~~~l~-----~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~d 135 (783)
...++.+++.+. ...-++|.++. |....+.+.+.|++.|.+|.....|.......+.......+.....|
T Consensus 113 ~~~~e~L~~~l~~~~~~~~~~~~vL~~r-----g~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d 187 (254)
T 4es6_A 113 GDDSEALLALPAFQDSLRVHDPKVLIMR-----GEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLN 187 (254)
T ss_dssp CCSHHHHHTCHHHHHHTCSSSCEEEEEE-----CSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCC
T ss_pred CCCHHHHHHhHhhcccccCCCCEEEEEc-----CCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCC
Confidence 345677887775 33457777665 33445677889999999886555443222111112223344556677
Q ss_pred EEEEEcChhhHHHHHHHHHH
Q 036525 136 VFIVHKLPSLGSRIFEKANE 155 (783)
Q Consensus 136 vii~~~~~~~~~~~~~~a~~ 155 (783)
+|+ ++++..+..|+..+.+
T Consensus 188 ~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 188 GLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp EEE-CCSHHHHHHHHHHHGG
T ss_pred EEE-EcCHHHHHHHHHHhhH
Confidence 655 5677777777776644
No 271
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=43.69 E-value=1.3e+02 Score=27.09 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=57.7
Q ss_pred eEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh----hhHHHHHHH
Q 036525 77 REAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP----SLGSRIFEK 152 (783)
Q Consensus 77 ~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~----~~~~~~~~~ 152 (783)
.+|.+.....+.-.-....+...|+..|.+|.+-.. .. .....+..+++.+||+|.+++.. .....++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~---~~---p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL---RQ---TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS---BC---CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC---CC---CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 466666666666566677788889999998864321 12 23345667778899999998753 357778888
Q ss_pred HHHcCccccceEEEEeC
Q 036525 153 ANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 153 a~~~g~~~~~~~~i~~~ 169 (783)
.++.|.. .-.+|+++.
T Consensus 93 L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHTTCT-TSCEEEEEC
T ss_pred HHhcCCC-CCEEEEeCC
Confidence 8888752 234566654
No 272
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=42.99 E-value=16 Score=37.64 Aligned_cols=51 Identities=6% Similarity=-0.084 Sum_probs=34.5
Q ss_pred ccEEEeeHHHHHHHhhh----CCCCCCCCCCCChHHHHHHHHcCeecEEEeceee
Q 036525 338 TSVTGYCIDVFKAVIPE----LPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITI 388 (783)
Q Consensus 338 ~~~~G~~idl~~~ia~~----l~f~~~~~~~~~~~gli~~l~~g~~Di~~~~~~~ 388 (783)
+.+..+...+.+.+.+. +|.+..-...+...+.+..|.+|++|+++.....
T Consensus 43 G~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~ 97 (327)
T 4ddd_A 43 GVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDL 97 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHH
Confidence 44556666777777776 5655211223557788999999999999876543
No 273
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=42.72 E-value=40 Score=33.77 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=47.4
Q ss_pred eEEEEEEEe---C-CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 77 REAVPIYVD---N-QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 77 ~~vaii~~d---~-~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
.+|++|+++ + .|.....+.+++.+++.|.++..... .....+....+..+.+.+.|.||+.+..
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEG---VNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECC---CCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 578888852 3 78888899999999999988765332 1233466678888888999999987654
No 274
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=42.69 E-value=7.3 Score=37.56 Aligned_cols=35 Identities=23% Similarity=0.058 Sum_probs=30.8
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEeec
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFS 39 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~ 39 (783)
.+.+|..|+||.+|+-......+++++++|+||.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 44578999999999999999999999999999864
No 275
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=42.18 E-value=36 Score=33.52 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=48.1
Q ss_pred HHHHHcCCeEEEEEEEe--CCcCCcchHHHHHHHhhCCce-EeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc
Q 036525 69 AIIKAFGWREAVPIYVD--NQYGEAMIPSLTDALHAIDTR-VPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK 141 (783)
Q Consensus 69 ~~l~~~gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~-v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~ 141 (783)
+-|+.-.-+.|+++..+ +.|.....+.+.+++++.|.. +... ....+...-...+..+.+.++|.||+..
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33444455789999865 667788899999999999998 5432 2222333445667788889999999877
No 276
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=41.88 E-value=53 Score=33.69 Aligned_cols=82 Identities=7% Similarity=-0.032 Sum_probs=50.7
Q ss_pred CCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHH
Q 036525 75 GWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 75 gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
.-+.|+++..+ +.|...+...+.+++++.|..+..... . ..........+..+.+.+.|.||+.........+...
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~ 137 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVE 137 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHH
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHH
Confidence 34578888864 456677889999999999998865431 1 1112234456777888899988886432222223344
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 138 ~~~~~i 143 (349)
T 1jye_A 138 AACTNV 143 (349)
T ss_dssp HHTTTS
T ss_pred HhhCCC
Confidence 445553
No 277
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=41.82 E-value=59 Score=33.38 Aligned_cols=80 Identities=9% Similarity=-0.018 Sum_probs=55.0
Q ss_pred CCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHH
Q 036525 75 GWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 75 gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
.-+.|+++..+ +.|...+...+.+++++.|..+..... ..+...-...+..+.+.++|.||+...... ...+..
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~ 144 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT---AYSPEREEQLVETMLRRRPEAMVLSYDGHT-EQTIRL 144 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEECSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34578888853 556778899999999999998865431 223334456677788889999888765433 255667
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 145 l~~~~i 150 (355)
T 3e3m_A 145 LQRASI 150 (355)
T ss_dssp HHHCCS
T ss_pred HHhCCC
Confidence 777775
No 278
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=41.59 E-value=1.2e+02 Score=28.47 Aligned_cols=89 Identities=11% Similarity=-0.093 Sum_probs=60.1
Q ss_pred eEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh----hhHHHHHHH
Q 036525 77 REAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP----SLGSRIFEK 152 (783)
Q Consensus 77 ~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~----~~~~~~~~~ 152 (783)
.+|.+.....+...-....+...++..|.+|.+-. .+.+ ....+..+++.+||+|.+.+.. .....++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~vp---~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VDIE---PGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SSBC---HHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CCCC---HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 46766666666666667778888999999986532 1222 3345566677899999998753 357788888
Q ss_pred HHHcCccccceEEEEeCCc
Q 036525 153 ANEIGLMNKGCVWIMTDGM 171 (783)
Q Consensus 153 a~~~g~~~~~~~~i~~~~~ 171 (783)
.++.|....-.+++++..+
T Consensus 163 l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp HHHTTCGGGCEEEEESTTC
T ss_pred HHhcCCCCCCeEEEECCCC
Confidence 8888864334566665544
No 279
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=41.35 E-value=53 Score=29.50 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=49.2
Q ss_pred EEEEEEEeCCcC--CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhH--HHHHH
Q 036525 78 EAVPIYVDNQYG--EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLG--SRIFE 151 (783)
Q Consensus 78 ~vaii~~d~~~G--~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~--~~~~~ 151 (783)
++.|+| .+.+| +.+++.+.+.+++.|+++.... .. +.+....+.++. ..|.|++.++. ... ..++.
T Consensus 2 kv~IvY-~S~tGnT~~~A~~ia~~l~~~g~~v~~~~---~~--~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~fl~ 73 (161)
T 3hly_A 2 SVLIGY-LSDYGYSDRLSQAIGRGLVKTGVAVEMVD---LR--AVDPQELIEAVS--SARGIVLGTPPSQPSEAVATALS 73 (161)
T ss_dssp CEEEEE-CTTSTTHHHHHHHHHHHHHHTTCCEEEEE---TT--TCCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHHHH
T ss_pred EEEEEE-ECCChHHHHHHHHHHHHHHhCCCeEEEEE---CC--CCCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHHHH
Confidence 467777 44455 5677888888888887764332 11 223333444443 34666665432 222 46777
Q ss_pred HHHHcCccccceEEEEeCCcc
Q 036525 152 KANEIGLMNKGCVWIMTDGMT 172 (783)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~~~~ 172 (783)
......+.......+++.+|.
T Consensus 74 ~l~~~~l~gk~v~~fgs~g~~ 94 (161)
T 3hly_A 74 TIFAAAHNKQAIGLFDSYGGD 94 (161)
T ss_dssp HHHHHCCTTSEEEEECCCCSS
T ss_pred HHHhhhhCCCEEEEEEcCCCC
Confidence 766655555555566666664
No 280
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.31 E-value=95 Score=26.28 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=39.4
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...+++.|..|.. . . +....+..+.+..+|+|++.... .++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~----~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRR---A----A--SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E----S--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEE---e----C--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 4567778888888876632 1 1 33445666777889999987543 46778888887753
No 281
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=41.27 E-value=26 Score=34.99 Aligned_cols=54 Identities=7% Similarity=0.223 Sum_probs=45.3
Q ss_pred cCccchhHHHHHHHhhhcc--cccccccchhhhHHHHHHHHHHHHHHhhhhhhhee
Q 036525 452 KHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWCFVVLILTQSYTASLTSLL 505 (783)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~L 505 (783)
...+.+++|+++.++...| ...|.+..+|++.+++.++++.+...+.+.+...+
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999998776 34689999999999999999988888888776544
No 282
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.01 E-value=36 Score=23.34 Aligned_cols=12 Identities=0% Similarity=0.119 Sum_probs=5.3
Q ss_pred HHHHHHhhcccc
Q 036525 667 AVFVHQHRNVLR 678 (783)
Q Consensus 667 ~E~~~~~~~~~r 678 (783)
+-++++||++.+
T Consensus 30 ~~~~~RRRr~~~ 41 (44)
T 2l2t_A 30 FAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHTTCSSC
T ss_pred HHHHhhhhhhhh
Confidence 334444444443
No 283
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=40.99 E-value=81 Score=26.68 Aligned_cols=57 Identities=9% Similarity=-0.056 Sum_probs=39.8
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~ 156 (783)
.....+.+.+++.|..+... . +....+..+++..+|+|++... ..++..++++.++.
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV-------H--SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-------C--SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCeEEEE-------C--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 45677888888888775321 1 3445666777888999999754 34677888888873
No 284
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=40.23 E-value=1e+02 Score=26.81 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=41.2
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|..|... . +....+..+++..+|+|++... ..++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV-------R--NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE-------S--SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe-------C--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45777888888888765321 1 3445667778889999999764 346778888888764
No 285
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=40.01 E-value=1.2e+02 Score=26.26 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=44.0
Q ss_pred EEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 80 VPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 80 aii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.+|.+|+. .....+...|++.|.+++... . +-...+..+++..+|+|++... .-++..++++.++..
T Consensus 15 ILiVDD~~---~~r~~l~~~L~~~G~~~v~~a------~--~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 15 ILIVDDFS---TMRRIVKNLLRDLGFNNTQEA------D--DGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp EEEECSCH---HHHHHHHHHHHHTTCCCEEEE------S--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred EEEEeCCH---HHHHHHHHHHHHcCCcEEEEE------C--CHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 34444444 456777888888887654322 1 2334566777788999998654 447888888888644
No 286
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=39.60 E-value=34 Score=33.91 Aligned_cols=78 Identities=9% Similarity=-0.064 Sum_probs=51.5
Q ss_pred eEEEEEEEe------CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHH
Q 036525 77 REAVPIYVD------NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIF 150 (783)
Q Consensus 77 ~~vaii~~d------~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~ 150 (783)
++|+++..+ +.|...+.+.+++++++.|.++.... ...+...-...+..+.+.++|.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 467777644 46777888999999999998875422 11121223456777888899999887643322 456
Q ss_pred HHHHHcCc
Q 036525 151 EKANEIGL 158 (783)
Q Consensus 151 ~~a~~~g~ 158 (783)
+.+.+.|+
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66777774
No 287
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=39.54 E-value=47 Score=32.69 Aligned_cols=65 Identities=6% Similarity=-0.022 Sum_probs=46.3
Q ss_pred CeEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 76 WREAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 76 w~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
-++|+++.. ++.|.....+.+.+++++.|.++.... ...+.......+..+.+.++|.||+....
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 357888885 466777888999999999998876532 22233344566778888899998886543
No 288
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=39.31 E-value=1.3e+02 Score=29.31 Aligned_cols=85 Identities=8% Similarity=0.080 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh-
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP- 143 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~- 143 (783)
..+++..+.. ..-+.++. |..|..+..+.+...-+..++.|.....+ .+ .+ ++...+..++|+|.+.+..
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi---~~--~~--qi~ea~~~GAD~ilLi~a~l 134 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY---ID--TV--QVKLASSVGADAILIIARIL 134 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC---CS--TH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC---CC--HH--HHHHHHHcCCCEEEEecccC
Confidence 3344444433 55666665 66677777888887777778777655432 12 33 5677889999999987765
Q ss_pred --hhHHHHHHHHHHcCc
Q 036525 144 --SLGSRIFEKANEIGL 158 (783)
Q Consensus 144 --~~~~~~~~~a~~~g~ 158 (783)
.+...++..++++||
T Consensus 135 ~~~~l~~l~~~a~~lGl 151 (251)
T 1i4n_A 135 TAEQIKEIYEAAEELGM 151 (251)
T ss_dssp CHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 478999999999997
No 289
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=39.28 E-value=14 Score=35.58 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=41.3
Q ss_pred HHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHH-hhCCceEeEEEe--c-CCCC--ChhHHHHHHHHHhccCceEEEEEc
Q 036525 68 TAIIKAFGWREAVPIYVDNQYGEAMIPSLTDAL-HAIDTRVPYRSV--I-SPLA--TDDQIEKELYKLFTMQTRVFIVHK 141 (783)
Q Consensus 68 ~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l-~~~g~~v~~~~~--i-~~~~--~~~d~~~~l~~l~~~~~dvii~~~ 141 (783)
++.+...| ++|+++...... ...+.+.+ ++.|.++..... + .... ....+...+.++.+.++|+||+.|
T Consensus 108 ~~~a~~~~-~rigVlat~~t~----~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgC 182 (228)
T 2eq5_A 108 SALALAYG-RRVGVLNLTEET----PKVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGC 182 (228)
T ss_dssp HHHHHTTC-SSEEEECSSSCC----CHHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHhC-CeEEEEecCccc----HHHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 33333466 889999864332 24577788 777766422100 0 0000 112355566667667899999877
Q ss_pred Chhh
Q 036525 142 LPSL 145 (783)
Q Consensus 142 ~~~~ 145 (783)
..-.
T Consensus 183 T~~~ 186 (228)
T 2eq5_A 183 TGMS 186 (228)
T ss_dssp THHH
T ss_pred CCcc
Confidence 6544
No 290
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=38.82 E-value=36 Score=35.40 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=55.2
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEE--ecCCCCChhHHHHHHHHHhccCc---eEEEEEc
Q 036525 67 ITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRS--VISPLATDDQIEKELYKLFTMQT---RVFIVHK 141 (783)
Q Consensus 67 i~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~--~i~~~~~~~d~~~~l~~l~~~~~---dvii~~~ 141 (783)
+.++++.+ +++.+|+....+.. ..+.+.+.| +.| ++.... ....+.+.+.+...+..+++.++ |+||..+
T Consensus 24 l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavG 98 (354)
T 1xah_A 24 IGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVG 98 (354)
T ss_dssp HHHHHTTC--SCEEEEEEHHHHHH-HHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEE
T ss_pred HHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEEC
Confidence 44555555 78888885543322 566677777 666 443221 12223355677778888888888 8888776
Q ss_pred Chh--hHHHHHHHHHHcCccccceEEEEeCC
Q 036525 142 LPS--LGSRIFEKANEIGLMNKGCVWIMTDG 170 (783)
Q Consensus 142 ~~~--~~~~~~~~a~~~g~~~~~~~~i~~~~ 170 (783)
.+. |+..++......| ..++-|-|..
T Consensus 99 GGsv~D~ak~vA~~~~rg---ip~i~IPTT~ 126 (354)
T 1xah_A 99 GGATGDFAGFVAATLLRG---VHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHHBTTC---CEEEEEECST
T ss_pred ChHHHHHHHHHHHHhccC---CCEEEECCcc
Confidence 654 7777777665555 3455566654
No 291
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=38.04 E-value=82 Score=29.30 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=46.1
Q ss_pred cCCeEEEEEEEeCCc--C---CcchHHHHHHHhh---CCceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcCh
Q 036525 74 FGWREAVPIYVDNQY--G---EAMIPSLTDALHA---IDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKLP 143 (783)
Q Consensus 74 ~gw~~vaii~~d~~~--G---~~~~~~~~~~l~~---~g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~~ 143 (783)
+.--+|+||...|+- | ......+.+.+++ .|.++.....++. +.+++...+.+..+ .++|+||..+..
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVIttGGt 88 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPD--EIEEIKETLIDWCDEKELNLILTTGGT 88 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCCC
Confidence 444578888865541 2 3345678888887 7999988777763 34477777777654 379999988644
No 292
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.95 E-value=1.4e+02 Score=25.20 Aligned_cols=56 Identities=7% Similarity=-0.072 Sum_probs=39.4
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHH
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANE 155 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~ 155 (783)
.....+...++..|.+|... . +....+..+++..+|+|++.... .++..++++.++
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIISA-------D--SGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-------S--SHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEEe-------C--CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 55777888888888765321 1 33456667777889999997653 367788888887
No 293
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=37.74 E-value=18 Score=35.83 Aligned_cols=81 Identities=5% Similarity=0.009 Sum_probs=53.4
Q ss_pred eEEEEEEEe----CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHH
Q 036525 77 REAVPIYVD----NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFE 151 (783)
Q Consensus 77 ~~vaii~~d----~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~ 151 (783)
++|+++..+ +.|.....+.+++++++.|.++..... ....+.......+..+.+.++|.||+..... .....++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAP-EKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCC-SSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecC-CCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 578888753 567788899999999999988754221 0012223445667777788999988875443 3335566
Q ss_pred HHHHcCc
Q 036525 152 KANEIGL 158 (783)
Q Consensus 152 ~a~~~g~ 158 (783)
++.+.|+
T Consensus 85 ~~~~~~i 91 (289)
T 3brs_A 85 EIKDAGI 91 (289)
T ss_dssp TTGGGTC
T ss_pred HHHHCCC
Confidence 6666664
No 294
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=37.55 E-value=2e+02 Score=25.56 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=40.9
Q ss_pred eEEEEEEEeCCcC------CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh-ccCceEEEEEcChhhH
Q 036525 77 REAVPIYVDNQYG------EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFIVHKLPSLG 146 (783)
Q Consensus 77 ~~vaii~~d~~~G------~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~-~~~~dvii~~~~~~~~ 146 (783)
++|.++.+.-..| ......+.+.+++.|..+.....=-.+.+..+....+.+.. ..+||+|++.....|.
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~ 79 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGANDG 79 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCHHHH
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeecccC
Confidence 4666666444444 35567778888877655433221112344455555555543 3499999998777664
No 295
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=37.23 E-value=1.3e+02 Score=29.40 Aligned_cols=86 Identities=7% Similarity=0.068 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC---
Q 036525 66 AITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--- 142 (783)
Q Consensus 66 ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--- 142 (783)
.++++.+ -|..-+.++. |..|..+..+.+.+.-+...+.|.....+- + . -++.+.+..++|+|++...
T Consensus 68 ~iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFii---d--~--yQI~eAr~~GADaILLI~a~L~ 138 (258)
T 4a29_A 68 EYAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFIV---K--E--SQIDDAYNLGADTVLLIVKILT 138 (258)
T ss_dssp HHHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCCC---S--H--HHHHHHHHHTCSEEEEEGGGSC
T ss_pred HHHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeeccccc---c--H--HHHHHHHHcCCCeeehHHhhcC
Confidence 3455544 4777777776 666777888888888777777776554332 2 2 3677888899999888654
Q ss_pred hhhHHHHHHHHHHcCccc
Q 036525 143 PSLGSRIFEKANEIGLMN 160 (783)
Q Consensus 143 ~~~~~~~~~~a~~~g~~~ 160 (783)
..+...+...|.++||..
T Consensus 139 ~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 139 ERELESLLEYARSYGMEP 156 (258)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 356889999999999843
No 296
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=36.77 E-value=30 Score=34.29 Aligned_cols=79 Identities=5% Similarity=0.056 Sum_probs=48.1
Q ss_pred CeEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEE-EecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHH
Q 036525 76 WREAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYR-SVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEK 152 (783)
Q Consensus 76 w~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~-~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~ 152 (783)
-++|+++.. ++.|...+...+++++++.|.++... .. ..+.......+..+.+.++|.||+...... ...++.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 83 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSG---SADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQL 83 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCC---CCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHH
Confidence 357888875 46677888999999999999887653 21 111122334667777889999888765432 245566
Q ss_pred HHHcCc
Q 036525 153 ANEIGL 158 (783)
Q Consensus 153 a~~~g~ 158 (783)
+.+.|+
T Consensus 84 l~~~~i 89 (290)
T 3clk_A 84 LQSSDV 89 (290)
T ss_dssp HHCC--
T ss_pred HHhCCC
Confidence 666664
No 297
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=36.75 E-value=1.1e+02 Score=28.64 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=63.9
Q ss_pred cEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEec
Q 036525 34 PILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVI 113 (783)
Q Consensus 34 P~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i 113 (783)
.+||-+++...+.+...-=+.-...+.....+++... +.++ ++++++.-.+.. ..++.+.+.+ |.++.....
T Consensus 54 VIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~a-~~~~-~kIavvg~~~~~--~~~~~~~~ll---~~~i~~~~~- 125 (196)
T 2q5c_A 54 AIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNA-KRFG-NELALIAYKHSI--VDKHEIEAML---GVKIKEFLF- 125 (196)
T ss_dssp EEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHH-GGGC-SEEEEEEESSCS--SCHHHHHHHH---TCEEEEEEE-
T ss_pred EEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHHH-HhhC-CcEEEEeCcchh--hHHHHHHHHh---CCceEEEEe-
Confidence 4566665555554322222444445555555555544 3444 488888754432 2244444444 566654332
Q ss_pred CCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 114 SPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 114 ~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.+.++....+.++++.+.++|+-.+. ..+.|++.|++
T Consensus 126 ---~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 126 ---SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp ---CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred ---CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 23458899999999999999877443 35677889974
No 298
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=36.66 E-value=1.1e+02 Score=25.75 Aligned_cols=55 Identities=7% Similarity=0.016 Sum_probs=31.8
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~ 156 (783)
.....+...++..|..|.. . . +....+..+.+..+|+|+ ....++..++++.++.
T Consensus 29 ~~~~~l~~~L~~~g~~v~~---~---~---~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFMADV---T---E---SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E---S---CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEE---e---C---CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 3456666777777765531 1 1 223444555566778777 4445566677776665
No 299
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=36.52 E-value=56 Score=33.65 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=47.9
Q ss_pred cCccchhHHHHHHHhhhcc-cc-c--ccccchhhhHHHHHHHHHHHHHHhhhhhhheeeccccC
Q 036525 452 KHQVGTSFWFSFSTMVFSQ-RE-R--VISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQ 511 (783)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~~-~~-~--~~s~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~~~~~ 511 (783)
..++..++||++.++...| +. . +.+..+++++.+-.+.++++.+.-++-+.+-++.++.+
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3578899999999999776 32 2 35778999999999999999999998888777665443
No 300
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=36.46 E-value=1.5e+02 Score=24.82 Aligned_cols=58 Identities=14% Similarity=0.011 Sum_probs=39.1
Q ss_pred cchHHHHHHHhh-CCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHA-IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~-~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~ 156 (783)
.....+...+++ .|.+++... . +....+..+++..+|+|++.... .++..++++.++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~------~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKIA------Y--NPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE------C--SHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEEE------C--CHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 456777888888 787733222 1 33445666677789999998653 3577888888874
No 301
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=36.28 E-value=1.5e+02 Score=24.95 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=40.3
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc-ChhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK-LPSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~-~~~~~~~~~~~a~~~g 157 (783)
.....+...+++.|.+|... . +....+..+.+..+|+|++.. ...+...++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIWA-------K--NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEEE-------S--SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEE-------C--CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 56777888888888876421 1 334566777778899999986 2235677788887764
No 302
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=36.20 E-value=58 Score=29.58 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=42.9
Q ss_pred eEEEEEEEeCCc--CC---cchHHHHHHHhhC-----CceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcCh
Q 036525 77 REAVPIYVDNQY--GE---AMIPSLTDALHAI-----DTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKLP 143 (783)
Q Consensus 77 ~~vaii~~d~~~--G~---~~~~~~~~~l~~~-----g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~~ 143 (783)
-+|+||...|+- |+ .....+.+.+++. |.++.....++. +.+.+...+.+..+ .++|+||..+-.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD--EVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 477887755442 11 1134667777777 998887777662 34467777777664 579999998644
No 303
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=35.99 E-value=91 Score=30.84 Aligned_cols=86 Identities=5% Similarity=-0.053 Sum_probs=53.6
Q ss_pred HHHHHHcCCeEEEEEEEe--CCcCC-cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh
Q 036525 68 TAIIKAFGWREAVPIYVD--NQYGE-AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS 144 (783)
Q Consensus 68 ~~~l~~~gw~~vaii~~d--~~~G~-~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~ 144 (783)
|+-|+.-.-+.|+++..+ +.|.. .+...+.+++++.|..+..... ..+...-...+..+.+.+.|.||+.....
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 344444455789999864 45666 8999999999999998865432 22333455677788888999888765443
Q ss_pred hHHHHHHHHHHcCc
Q 036525 145 LGSRIFEKANEIGL 158 (783)
Q Consensus 145 ~~~~~~~~a~~~g~ 158 (783)
.. .+..+.+.|+
T Consensus 82 ~~--~~~~~~~~~i 93 (301)
T 3miz_A 82 RI--VDPESGDVSI 93 (301)
T ss_dssp EE--CCCCCTTCCC
T ss_pred cH--HHHHHHhCCC
Confidence 22 3444445553
No 304
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.81 E-value=1.5e+02 Score=24.38 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=39.4
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+...+++.|.++... . +....+..+++..+|+|++... ..++..++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~-------~--~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA-------E--NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-------S--SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEEe-------C--CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 45667778888888776421 1 3345666777888999998654 346778888887653
No 305
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=35.60 E-value=89 Score=31.69 Aligned_cols=67 Identities=6% Similarity=-0.044 Sum_probs=47.5
Q ss_pred cCCeEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 74 FGWREAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 74 ~gw~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
-.-++|+++.. ++.|...+...+++++++.|..+.... ...+.......+..+.+.++|.||+....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34468999985 366777889999999999998886532 12233344556777888899998886543
No 306
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=35.49 E-value=33 Score=34.30 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=40.7
Q ss_pred CccchhHHHHHHHhhhcc-c-cc--ccc----cchhhhHHHHHHHHHHHHHHhhhhhhheeec
Q 036525 453 HQVGTSFWFSFSTMVFSQ-R-ER--VIS----NLARFVVIVWCFVVLILTQSYTASLTSLLTV 507 (783)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~-~-~~--~~s----~~~R~l~~~w~l~~lil~s~Yta~L~s~Lt~ 507 (783)
.++.+++|..+.+++..| + +. |.. .+.+++..+.++.++++.+.++|-+.+.+..
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998766 3 21 322 2347777788888899999999999887754
No 307
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.37 E-value=40 Score=33.53 Aligned_cols=79 Identities=6% Similarity=-0.029 Sum_probs=53.5
Q ss_pred CeEEEEEEE-------eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHH
Q 036525 76 WREAVPIYV-------DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSR 148 (783)
Q Consensus 76 w~~vaii~~-------d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~ 148 (783)
-+.|+++.. ++.|...+...+.+++++.|..+.... .......-...+..+.+.++|.||+...... ..
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTV---SNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECC---CCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEc---CCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 357888872 466778899999999999998875422 1222223345667778889999988754322 24
Q ss_pred HHHHHHHcCc
Q 036525 149 IFEKANEIGL 158 (783)
Q Consensus 149 ~~~~a~~~g~ 158 (783)
.++.+.+.|+
T Consensus 83 ~~~~l~~~~i 92 (295)
T 3hcw_A 83 IKQMLIDESM 92 (295)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 5666777775
No 308
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=35.37 E-value=72 Score=31.71 Aligned_cols=34 Identities=6% Similarity=0.215 Sum_probs=23.2
Q ss_pred cccCCeEEEEccCCchhHHHHHcccCCCCccEEe
Q 036525 4 LNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILS 37 (783)
Q Consensus 4 i~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is 37 (783)
+.+.++.+|+=+-.+..+.++-.+-+..++|+|.
T Consensus 65 L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 65 LKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 3456888888765555555666666677888886
No 309
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=35.03 E-value=1.6e+02 Score=27.91 Aligned_cols=90 Identities=11% Similarity=0.004 Sum_probs=60.4
Q ss_pred eEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEE--EcChh----hHHHHH
Q 036525 77 REAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIV--HKLPS----LGSRIF 150 (783)
Q Consensus 77 ~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~--~~~~~----~~~~~~ 150 (783)
.+|.+-....+...-....+...|+..|.+|.+--. +.+ ....+..+++.+||+|.+ .+... ....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---~vp---~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV---DVL---NENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS---SCC---HHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC---CCC---HHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 466666666666666677778889999999865321 222 345567777889999999 55443 467788
Q ss_pred HHHHHcCccccceEEEEeCCcc
Q 036525 151 EKANEIGLMNKGCVWIMTDGMT 172 (783)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~~~~ 172 (783)
++.++.|+...-.+|+++...+
T Consensus 167 ~~l~~~~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGAPVS 188 (215)
T ss_dssp HHHHHTTCGGGSEEEEESSSCC
T ss_pred HHHHHcCCCCCCEEEEECCCCC
Confidence 8899988643445677765543
No 310
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=34.98 E-value=33 Score=34.19 Aligned_cols=80 Identities=8% Similarity=0.018 Sum_probs=55.2
Q ss_pred eEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhh-HHHHHHHH
Q 036525 77 REAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSL-GSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~-~~~~~~~a 153 (783)
++|+++..+ +.|...+...+++++++.|.++..... ....+...-...+..+.+.++|.||+...... ....++++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEA-GGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEEC-SSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 578888854 667788899999999999998865432 11013334556777888889999988754433 24456777
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
. .|+
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 6 774
No 311
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=34.74 E-value=2e+02 Score=27.85 Aligned_cols=89 Identities=6% Similarity=0.028 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCCeEEEEEE---------------EeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHH
Q 036525 63 QVGAITAIIKAFGWREAVPIY---------------VDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELY 127 (783)
Q Consensus 63 ~~~ai~~~l~~~gw~~vaii~---------------~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~ 127 (783)
.+..++..|...|..++.++- ..++-|+..++.+.+.+++.+-.+.... ++...+.++....+
T Consensus 39 lG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~-~~~~~~~~~~~~~~- 116 (251)
T 1zud_1 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA-LQQRLTGEALKDAV- 116 (251)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE-ECSCCCHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE-EeccCCHHHHHHHH-
Confidence 466788888889999998873 3345577888999999988643332222 22222333333322
Q ss_pred HHhccCceEEEEEcChhhHHHHHH-HHHHcC
Q 036525 128 KLFTMQTRVFIVHKLPSLGSRIFE-KANEIG 157 (783)
Q Consensus 128 ~l~~~~~dvii~~~~~~~~~~~~~-~a~~~g 157 (783)
.+.|+||.+.........+. .+.+.+
T Consensus 117 ----~~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 117 ----ARADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp ----HHCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred ----hcCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 25799998876666555554 444555
No 312
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=34.62 E-value=1e+02 Score=31.43 Aligned_cols=94 Identities=5% Similarity=0.003 Sum_probs=49.3
Q ss_pred eEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCC-cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh
Q 036525 52 YFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGE-AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF 130 (783)
Q Consensus 52 ~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~-~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~ 130 (783)
.+|.++++.+.....|.. .+++.+|+ |..-|. ...+.+.+.+++.|+++.....- ... +......++.
T Consensus 11 ~~~~~~~~~~~~~~~m~~------~~~~~vi~-Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~--~~~--~~~~~~~~~~ 79 (332)
T 2bon_A 11 SLYKKAGSETLYIQGMAE------FPASLLIL-NGKSTDNLPLREAIMLLREEGMTIHVRVTW--EKG--DAARYVEEAR 79 (332)
T ss_dssp -------------------------CCEEEEE-CSSSTTCHHHHHHHHHHHTTTCCEEEEECC--STT--HHHHHHHHHH
T ss_pred eeeeeccCcchhhhhhhh------cceEEEEE-CCCCCCCchHHHHHHHHHHcCCcEEEEEec--Ccc--hHHHHHHHHH
Confidence 345555555544444432 26777777 333333 45567788888999887655432 122 3444445555
Q ss_pred ccCceEEEEEcChhhHHHHHHHHHHc
Q 036525 131 TMQTRVFIVHKLPSLGSRIFEKANEI 156 (783)
Q Consensus 131 ~~~~dvii~~~~~~~~~~~~~~a~~~ 156 (783)
..++|+||+.+.......+++.+.+.
T Consensus 80 ~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 80 KFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEEccchHHHHHHHHHhhc
Confidence 56789999988888888888888743
No 313
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=34.56 E-value=1e+02 Score=26.08 Aligned_cols=56 Identities=5% Similarity=-0.083 Sum_probs=40.3
Q ss_pred cchHHHHHHHhh-CCceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcC---hhhHHHHHHHHHH
Q 036525 91 AMIPSLTDALHA-IDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKL---PSLGSRIFEKANE 155 (783)
Q Consensus 91 ~~~~~~~~~l~~-~g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~---~~~~~~~~~~a~~ 155 (783)
.....+...+++ .|.+|... . +....+..+++ ..+|+|++... ..++..++++.++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~-------~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV-------E--NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE-------C--SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE-------C--CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 456778888888 78776521 1 34456677777 88999999765 4468888888887
No 314
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=34.51 E-value=1.1e+02 Score=26.74 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=36.8
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|..+.... . +....+..+++. .+|+|++... ..++..++++.++..
T Consensus 47 ~~~~~l~~~L~~~g~~v~~~~-----~---~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNIIDTA-----A---DGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----S---SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCeEEEEE-----C---CHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 456777778888887664221 1 233445555555 6788888654 345677777777765
No 315
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=34.17 E-value=37 Score=33.69 Aligned_cols=33 Identities=3% Similarity=0.199 Sum_probs=23.2
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEe
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILS 37 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is 37 (783)
.+.++.+|+=+-.+..+.++-.+-+..++|+|.
T Consensus 62 ~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 62 LDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 346888888765665555666666778899887
No 316
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.45 E-value=75 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 036525 654 AGIAAILALIIFLAVFVHQHRNV 676 (783)
Q Consensus 654 l~~g~~ls~~vfl~E~~~~~~~~ 676 (783)
..+|+++.+++.++-++|.||++
T Consensus 17 ~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 17 AVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhheehhh
Confidence 34455555555555556655554
No 317
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=33.32 E-value=1.4e+02 Score=26.48 Aligned_cols=64 Identities=8% Similarity=-0.088 Sum_probs=41.1
Q ss_pred EeCCcCCcchHHHHHHHhhCCceEeEEEecCCC-CChhHHHHHHHHHhcc-Cc-eEEEEEcChhhHH
Q 036525 84 VDNQYGEAMIPSLTDALHAIDTRVPYRSVISPL-ATDDQIEKELYKLFTM-QT-RVFIVHKLPSLGS 147 (783)
Q Consensus 84 ~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~-~~~~d~~~~l~~l~~~-~~-dvii~~~~~~~~~ 147 (783)
..|+-|..+-+.+.+.|++.|.+|...-..+.+ .+..|+...+.+...+ .. +.|++|+++.-..
T Consensus 7 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~s 73 (149)
T 2vvr_A 7 GCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGIS 73 (149)
T ss_dssp EECTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHH
T ss_pred EeCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHHH
Confidence 467778999999999999999998765433322 1234555555444333 33 5677777765433
No 318
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=33.24 E-value=26 Score=34.88 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=22.6
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEe
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILS 37 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is 37 (783)
.+.++.+|+=+-.+..+.++-.+-+..++|+|.
T Consensus 71 ~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 71 LTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 355888887765565555555666677888887
No 319
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=33.05 E-value=1.2e+02 Score=24.99 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=38.0
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|..+.. . . +....+..+++..+|+|++.... .++..++++.++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~----~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTVL---A----A--DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRG 77 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E----S--CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCceEEE---e----C--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 4567777888888876642 1 1 33456667777889999987543 35677788887765
No 320
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.92 E-value=1.3e+02 Score=25.05 Aligned_cols=58 Identities=12% Similarity=0.022 Sum_probs=38.4
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccC-ceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~-~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|.++... . +....+..+.+.. +|+|++... ..++..++++.++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~------~---~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA------D---GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE------S---SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe------C---CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 45677788888888776431 1 2334455555565 899998754 346788888888764
No 321
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=32.74 E-value=1.5e+02 Score=25.12 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=45.5
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcCccccceEEEEe
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIGLMNKGCVWIMT 168 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g~~~~~~~~i~~ 168 (783)
.....+.+.+++.|........ . +....+..+.+..+|+|++.... .++..++++.++.+....-.+.+.+
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~~-----~--~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEFV-----D--NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-----S--SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCeeEEEE-----C--CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 4577788888888876332221 1 34456677778889999997653 3577888888874322222344444
Q ss_pred C
Q 036525 169 D 169 (783)
Q Consensus 169 ~ 169 (783)
+
T Consensus 89 ~ 89 (144)
T 3kht_A 89 D 89 (144)
T ss_dssp T
T ss_pred C
Confidence 4
No 322
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.74 E-value=1.2e+02 Score=25.43 Aligned_cols=58 Identities=10% Similarity=-0.074 Sum_probs=39.0
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh-------hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP-------SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~-------~~~~~~~~~a~~~g 157 (783)
.....+...+++.|.+|... . +....+..+.+..+|+|++.... .+...++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVITL---S------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEEE---C------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEEEe---C------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 45677888888888766421 1 23445566667789999997653 35677788877753
No 323
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=32.73 E-value=24 Score=34.08 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceE
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRV 107 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v 107 (783)
++.++.+...+-++|+++...... ....+++.+++.|.++
T Consensus 105 ~~~~~~a~~~~~~rigvlaT~~T~---~~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 105 EETAKKVKELGFKKAGLLATTGTI---VSGVYEKEFSKYGVEI 144 (228)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHHH---HHTHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCeEEEEecHHHh---hhhHHHHHHHHCCCeE
Confidence 344444444467788888643211 1234566677777765
No 324
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=32.72 E-value=67 Score=31.67 Aligned_cols=81 Identities=12% Similarity=0.022 Sum_probs=53.4
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-hHHHHHHHH
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS-LGSRIFEKA 153 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~-~~~~~~~~a 153 (783)
+.|+++.. ++.|...+.+.+.+++++.|..+..... ....+...-...+..+...++|.||+..... .....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 46788875 4667778889999999999988765331 0112222334567777788999988865433 233567777
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77774
No 325
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.66 E-value=1.3e+02 Score=25.87 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=40.0
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|..|... . +....+..+++..+|+|++.... .++..++++.++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHFA-------R--DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEEE-------S--SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEEE-------C--CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 45777888888888665321 1 33455666777889999997643 35777888887754
No 326
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=32.41 E-value=1.1e+02 Score=28.52 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=42.3
Q ss_pred eEEEEEEEeCCcC-----CcchHHHHHHHhhCCce--EeEEEecCCCCChhHHHHHHHHHhcc-CceEEEEEcCh
Q 036525 77 REAVPIYVDNQYG-----EAMIPSLTDALHAIDTR--VPYRSVISPLATDDQIEKELYKLFTM-QTRVFIVHKLP 143 (783)
Q Consensus 77 ~~vaii~~d~~~G-----~~~~~~~~~~l~~~g~~--v~~~~~i~~~~~~~d~~~~l~~l~~~-~~dvii~~~~~ 143 (783)
-+|+||...|+-- ......+.+.+++.|.+ +.....++ .+.+.+...|.++.+. ++|+|+..+..
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4678877655532 23456788889999887 55555554 2334677777776653 78999988644
No 327
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.35 E-value=1.8e+02 Score=23.51 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=37.9
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...++..|.+++... . +....+..+.+..+|++++.... .++..++++.++.+
T Consensus 13 ~~~~~l~~~l~~~g~~vv~~~-----~---~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~ 73 (120)
T 1tmy_A 13 FMRMMLKDIITKAGYEVAGEA-----T---NGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID 73 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----S---SHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCcEEEEEE-----C---CHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhC
Confidence 456677778888887753322 1 22344555666789999987543 35677788777754
No 328
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=32.18 E-value=1.5e+02 Score=25.12 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=37.9
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHH
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANE 155 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~ 155 (783)
.....+...++..|..|.. .. +....+..+++..+|+|++.... .++..++++.++
T Consensus 19 ~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 19 PALAASISALSQEGFDIIQ---CG------NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGGHHHHHHHHHHTEEEEE---ES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEE---eC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 4567777888888876542 11 33345566666789999997643 367788888887
No 329
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=31.64 E-value=15 Score=38.59 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh-
Q 036525 66 AITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS- 144 (783)
Q Consensus 66 ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~- 144 (783)
.+.++++.+| +++.+|+....+.....+.+.+.|++.|..+ ..+.-..+.+.+......+++ ++|+||..+.+.
T Consensus 32 ~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~---~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv 106 (376)
T 1kq3_A 32 ILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNK---QIFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKT 106 (376)
T ss_dssp GHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEE---EECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHH
T ss_pred HHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeE---EEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHH
Confidence 3667777788 8999998554333333555666666666332 223323343456666666667 999999776654
Q ss_pred -hHHHHHHHHHHcCccccceEEEEeC
Q 036525 145 -LGSRIFEKANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 145 -~~~~~~~~a~~~g~~~~~~~~i~~~ 169 (783)
|+..++... .| ..++-|-|.
T Consensus 107 ~D~aK~iA~~--~~---~p~i~IPTT 127 (376)
T 1kq3_A 107 LDTAKAVAYK--LK---KPVVIVPTI 127 (376)
T ss_dssp HHHHHHHHHH--TT---CCEEEEESS
T ss_pred HHHHHHHHHh--cC---CCEEEecCc
Confidence 677776532 33 345555555
No 330
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=31.28 E-value=1e+02 Score=25.64 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=39.1
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|..+.... . +.. ..+..+++..+|+|++.... .++..++++.++..
T Consensus 12 ~~~~~l~~~L~~~g~~v~~~~--~-~~~-----~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 12 LAIAAIRNLLIKNDIEILAEL--T-EGG-----SAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQ 72 (134)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE--S-SST-----THHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCcEEEEEc--C-CHH-----HHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcC
Confidence 457778888888886664222 1 111 24455666789999997653 46778888888765
No 331
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=31.18 E-value=85 Score=31.35 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=24.5
Q ss_pred cccCCeEEEEccCCchhHHHHHcccCCCCccEEee
Q 036525 4 LNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSF 38 (783)
Q Consensus 4 i~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~ 38 (783)
+++.++.+|+=+-.+..+.++-.+-+..++|+|+.
T Consensus 80 l~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 80 QERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 34468888887756655556666667789999873
No 332
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=30.98 E-value=16 Score=34.74 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=27.9
Q ss_pred eEEEEccCCchhHHHHHcccCCCCccEEeec
Q 036525 9 VRVMLGPEDSMPTNFIIQPGNKSQVPILSFS 39 (783)
Q Consensus 9 V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~ 39 (783)
+..|+||.+|+-..-...+++++++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999999999999999999999965
No 333
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=30.70 E-value=1.7e+02 Score=30.32 Aligned_cols=109 Identities=7% Similarity=-0.074 Sum_probs=66.3
Q ss_pred CCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCC---CChhHHHHHH
Q 036525 50 SPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPL---ATDDQIEKEL 126 (783)
Q Consensus 50 ~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~---~~~~d~~~~l 126 (783)
.||-+......- ..+.++++.. +++.+|+....+. ..+.+.+.|++.|+++... .++.. .+.+.+...+
T Consensus 22 ~~~~I~~G~g~l---~~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~ 93 (368)
T 3qbe_A 22 PPYPVVIGTGLL---DELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIW 93 (368)
T ss_dssp SCEEEEEESCCH---HHHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHH
T ss_pred CCceEEEcCCHH---HHHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHH
Confidence 355555555432 3355566543 8998888655443 4788899999999876433 23322 2334555666
Q ss_pred HHHhcc---CceEEEEEcChh--hHHHHHHHHHHcCccccceEEEEeC
Q 036525 127 YKLFTM---QTRVFIVHKLPS--LGSRIFEKANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 127 ~~l~~~---~~dvii~~~~~~--~~~~~~~~a~~~g~~~~~~~~i~~~ 169 (783)
..+++. +.|+||..+.+. |...++......|+ .++-|-|.
T Consensus 94 ~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 138 (368)
T 3qbe_A 94 EVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGV---SIVHLPTT 138 (368)
T ss_dssp HHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCC---cEEEECCC
Confidence 666654 468888877665 77777766555553 34445554
No 334
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=30.65 E-value=56 Score=27.98 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=45.0
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc--ChhhHHHHHHHHHHcCc
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK--LPSLGSRIFEKANEIGL 158 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~--~~~~~~~~~~~a~~~g~ 158 (783)
+|.+|+. .....+...|++.|.+|+.. +. +-...+..+++..+|+|++.. ...++..++++.++.++
T Consensus 12 LiVdD~~---~~~~~l~~~L~~~G~~v~~~------a~--~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 12 LVVEDES---MIAMLIEDTLCELGHEVAAT------AS--RMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNV 80 (123)
T ss_dssp EEESSST---TTSHHHHHHHHHHCCCCCBC------SC--CHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCC
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEE------EC--CHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 4444444 45677788888889776321 11 344567778888999999864 44467778888887664
No 335
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=30.05 E-value=1.3e+02 Score=27.61 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=41.5
Q ss_pred EEEEEEEeCCc--C---CcchHHHHHHHh---hCCceEeEEEecCCCCChhHHHHHHHHHhcc-CceEEEEEcCh
Q 036525 78 EAVPIYVDNQY--G---EAMIPSLTDALH---AIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFIVHKLP 143 (783)
Q Consensus 78 ~vaii~~d~~~--G---~~~~~~~~~~l~---~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~-~~dvii~~~~~ 143 (783)
+|+||...|+- | ......+.+.++ +.|.++ ....++ .+.+++...+.+..+. ++|+||..+..
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~--Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIP--DERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 67777765541 1 223466777666 899998 555555 2344777778776653 79999988643
No 336
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=30.01 E-value=68 Score=30.49 Aligned_cols=54 Identities=9% Similarity=0.064 Sum_probs=35.1
Q ss_pred EEEEEEEeCCcCCcchHHHHHHHhh-C-CceEeEEEecCCCCChhHHHHHHHHHhccCceEEEE
Q 036525 78 EAVPIYVDNQYGEAMIPSLTDALHA-I-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIV 139 (783)
Q Consensus 78 ~vaii~~d~~~G~~~~~~~~~~l~~-~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~ 139 (783)
++-+++.++......++.+.+.|++ . |++|..... ++...+.++.+.+.|+++.
T Consensus 100 ~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~~--------~~~~~~~~~~~g~~d~~~~ 155 (229)
T 3o6p_A 100 TMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSPV--------PFSVRLDRSNKGDFDAVIG 155 (229)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEEE--------CHHHHHHHHHHTCCSEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEec--------CHHHHHHHhhcCCceEEEe
Confidence 6777776655556788899999999 8 998876542 2233344455455565543
No 337
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.89 E-value=99 Score=26.07 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=40.9
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh----hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP----SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~----~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|.+|... . +....+..+++..+|+|++.... .++..++++.++.+
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF-------A--SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE-------S--SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcEEEEe-------C--CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 45777888888888766421 1 33455666777889999997653 45778888888875
No 338
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.51 E-value=95 Score=29.79 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=60.8
Q ss_pred cEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEec
Q 036525 34 PILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVI 113 (783)
Q Consensus 34 P~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i 113 (783)
.+||-+++...+.+...-=+.-...+.....+++... +.++ ++++++.-.+. ...+....+-.|+++.....
T Consensus 66 VIISRGgta~~Lr~~~~iPVV~I~vs~~Dil~aL~~a-~~~~-~kIavVg~~~~-----~~~~~~i~~ll~~~i~~~~~- 137 (225)
T 2pju_A 66 AIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLAKA-GKLT-SSIGVVTYQET-----IPALVAFQKTFNLRLDQRSY- 137 (225)
T ss_dssp EEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHT-TCTT-SCEEEEEESSC-----CHHHHHHHHHHTCCEEEEEE-
T ss_pred EEEeCChHHHHHHhhCCCCEEEecCCHHHHHHHHHHH-HhhC-CcEEEEeCchh-----hhHHHHHHHHhCCceEEEEe-
Confidence 4556555554444321222334444544444444443 3344 57888864432 23333333334666654432
Q ss_pred CCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCcc
Q 036525 114 SPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 114 ~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~ 159 (783)
.+.++....+.++++.+.++||-.+. ..+.|++.||+
T Consensus 138 ---~~~ee~~~~i~~l~~~G~~vVVG~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 138 ---ITEEDARGQINELKANGTEAVVGAGL------ITDLAEEAGMT 174 (225)
T ss_dssp ---SSHHHHHHHHHHHHHTTCCEEEESHH------HHHHHHHTTSE
T ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCHH------HHHHHHHcCCc
Confidence 24568899999999999999876433 35667888874
No 339
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.46 E-value=1.9e+02 Score=22.86 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=38.5
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.++..|..+... . +....+..+.+..+|++++.... .+...++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~---~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL---V------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe---c------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 45677788888888766421 1 23344555666789999987644 35677888888764
No 340
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=29.38 E-value=2.1e+02 Score=29.15 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=50.7
Q ss_pred CeEEEEEEEeCCcCC----cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHH
Q 036525 76 WREAVPIYVDNQYGE----AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFE 151 (783)
Q Consensus 76 w~~vaii~~d~~~G~----~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~ 151 (783)
.+++.+|+ |-.-|. ...+.+.+.|++.|+++.....- ... +......++...++|+|++.+--.....++.
T Consensus 24 m~~i~vI~-NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~--~~~--~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~ 98 (337)
T 2qv7_A 24 RKRARIIY-NPTSGKEQFKRELPDALIKLEKAGYETSAYATE--KIG--DATLEAERAMHENYDVLIAAGGDGTLNEVVN 98 (337)
T ss_dssp CEEEEEEE-CTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC--STT--HHHHHHHHHTTTTCSEEEEEECHHHHHHHHH
T ss_pred cceEEEEE-CCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec--Ccc--hHHHHHHHHhhcCCCEEEEEcCchHHHHHHH
Confidence 46788877 444453 33567888888999877654421 112 4444555666678899999888888888888
Q ss_pred HHHHc
Q 036525 152 KANEI 156 (783)
Q Consensus 152 ~a~~~ 156 (783)
.+.+.
T Consensus 99 ~l~~~ 103 (337)
T 2qv7_A 99 GIAEK 103 (337)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 87443
No 341
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=29.19 E-value=90 Score=29.44 Aligned_cols=86 Identities=13% Similarity=0.044 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCC--cCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQ--YGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK 141 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~--~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~ 141 (783)
...+.+++..++-++|++|-.... -.....+.+.+++++.|.++.... +. ..+.+++... |+ ++|+|++.+
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~-~~~~~~~~~~---l~--~ad~I~l~G 87 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IA-TESLGEITTK---LR--KNDFIYVTG 87 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TT-TSCHHHHHHH---HH--HSSEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ec-CCChHHHHHH---HH--hCCEEEECC
Confidence 334444554455588888852111 113467888999999998765432 11 1233344433 33 368888876
Q ss_pred ChhhHHHHHHHHHHcCc
Q 036525 142 LPSLGSRIFEKANEIGL 158 (783)
Q Consensus 142 ~~~~~~~~~~~a~~~g~ 158 (783)
+ +...+++.+++.|+
T Consensus 88 -G-~~~~l~~~L~~~gl 102 (206)
T 3l4e_A 88 -G-NTFFLLQELKRTGA 102 (206)
T ss_dssp -S-CHHHHHHHHHHHTH
T ss_pred -C-CHHHHHHHHHHCCh
Confidence 3 33355566665555
No 342
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=29.08 E-value=1.3e+02 Score=28.44 Aligned_cols=88 Identities=15% Similarity=0.014 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCC-eEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHH-HHHHHhccCceEEEEEc
Q 036525 64 VGAITAIIKAFGW-REAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEK-ELYKLFTMQTRVFIVHK 141 (783)
Q Consensus 64 ~~ai~~~l~~~gw-~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~-~l~~l~~~~~dvii~~~ 141 (783)
.+++.+..+.-.. -.|+++.+|..- ....+.+++.|+.+.....-.. .+..++.. .+..|++.++|+|++.+
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~-----a~v~~~A~~~gIp~~~~~~~~~-~~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPG-----AKVVERVKVHEIPVCALDPKTY-PSKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSS-----SHHHHHHHTTTCCEEECCGGGS-SSHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCC-----cHHHHHHHHcCCCEEEeChhhc-CchhhhHHHHHHHHHhcCCCEEEEeC
Confidence 4555555543222 267777766432 1355677888988743221111 12334543 45678889999999999
Q ss_pred ChhhHHHHHHHHHHcC
Q 036525 142 LPSLGSRIFEKANEIG 157 (783)
Q Consensus 142 ~~~~~~~~~~~a~~~g 157 (783)
+..-...-+.+....|
T Consensus 90 y~~Il~~~~l~~~~~~ 105 (211)
T 3p9x_A 90 YMRLVGPTLLGAYEGR 105 (211)
T ss_dssp CCSCCCHHHHHHHTTS
T ss_pred chhhcCHHHHhhccCC
Confidence 9875544443444333
No 343
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=28.72 E-value=2.2e+02 Score=23.74 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=38.5
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...++..|..+.. . . +....+..+.+..+|+|++.... .++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~--~-~------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPIT--A-F------SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDP 73 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEE--E-S------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCceEEE--e-C------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 4567777888888876542 1 1 23345556667789999987643 35777888887753
No 344
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=28.59 E-value=2.6e+02 Score=27.85 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEEe--------------CCcCCcchHHHHHHHhhCCceEeEEEecCCCCCh-hHHHHHH
Q 036525 62 SQVGAITAIIKAFGWREAVPIYVD--------------NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATD-DQIEKEL 126 (783)
Q Consensus 62 ~~~~ai~~~l~~~gw~~vaii~~d--------------~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~-~d~~~~l 126 (783)
..+-.++.+|...|..++.++-.| ++-|+..++.+.+.+++.+-.+..+. ++...+. +++...+
T Consensus 46 GlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~-~~~~l~~~~~~~~~~ 124 (292)
T 3h8v_A 46 GVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEV-HNYNITTVENFQHFM 124 (292)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEE-ECCCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEE-ecccCCcHHHHHHHh
Confidence 457778888888888888776432 35788899999999998765544332 2222332 3444444
Q ss_pred HHHh------ccCceEEEEEcChhhHHHHHHH-HHHcC
Q 036525 127 YKLF------TMQTRVFIVHKLPSLGSRIFEK-ANEIG 157 (783)
Q Consensus 127 ~~l~------~~~~dvii~~~~~~~~~~~~~~-a~~~g 157 (783)
..+. ..+.|+|+-+...-.++..+.+ +.+.|
T Consensus 125 ~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~ 162 (292)
T 3h8v_A 125 DRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELG 162 (292)
T ss_dssp HHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred hhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhC
Confidence 3332 1578999988877777666644 45555
No 345
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=28.51 E-value=76 Score=31.18 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=46.2
Q ss_pred CeEEEEEEEe-CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh
Q 036525 76 WREAVPIYVD-NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 76 w~~vaii~~d-~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~ 143 (783)
-++|+++..+ +.|.......+.+++++.|.++.... ...+.......+..+.+.++|.||+....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS---SEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE---CTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 3578888864 56777888999999999998876532 12222344566777878899988886543
No 346
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=28.16 E-value=1.2e+02 Score=30.59 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=49.9
Q ss_pred EEEEEEEeCC----cCCcchHHHHHHHhh-------CCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhH
Q 036525 78 EAVPIYVDNQ----YGEAMIPSLTDALHA-------IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLG 146 (783)
Q Consensus 78 ~vaii~~d~~----~G~~~~~~~~~~l~~-------~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~ 146 (783)
+|+++.+... +|......++.++++ .|.++..... ....+...-...+.++.+.+.++||........
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~-d~~~~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 82 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEY-DDACDPKQAVAVANKIVNDGIKYVIGHLCSSST 82 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEE-ECTTCHHHHHHHHHHHHHTTCCEEECCSSHHHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe-CCCCCHHHHHHHHHHHHhCCCCEEEcCCCcHHH
Confidence 6788886532 566778888888877 5554433221 112222334456677777889998876555556
Q ss_pred HHHHHHHHHcCc
Q 036525 147 SRIFEKANEIGL 158 (783)
Q Consensus 147 ~~~~~~a~~~g~ 158 (783)
..+...+.+.++
T Consensus 83 ~~~~~~~~~~~i 94 (346)
T 1usg_A 83 QPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 666677777774
No 347
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=28.00 E-value=1.4e+02 Score=30.69 Aligned_cols=88 Identities=9% Similarity=0.143 Sum_probs=64.7
Q ss_pred ecCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceE
Q 036525 57 ALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 136 (783)
Q Consensus 57 ~p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dv 136 (783)
.|+....++.+.++++..+.++|.|..+.+. ..+.|+++++..+++|+. .. .+ .+++....-+.+|+
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~---~~--pe----~a~ID~~I~~~A~~ 327 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHR---QE--PD----DMYTSLAIMGRADL 327 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEEC---CS--SC----CHHHHHHHHHHSSE
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEE---eC--Cc----hhHHHHHHHHhCCE
Confidence 4777778888888888889999887774333 578899999887777642 22 22 35666666788999
Q ss_pred EEEEcChhhHHHHHHHHHHcC
Q 036525 137 FIVHKLPSLGSRIFEKANEIG 157 (783)
Q Consensus 137 ii~~~~~~~~~~~~~~a~~~g 157 (783)
+|-.+...-...+.++=.-.|
T Consensus 328 FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 328 FVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp EEECTTCHHHHHHHHHHHHSS
T ss_pred eecCccccccHHHHHHHHhcC
Confidence 999888887777776655566
No 348
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=27.86 E-value=2.2e+02 Score=23.88 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=38.5
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh--ccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF--TMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~--~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.++..|..+... . +....+..+. +..+|+|++.... .++..++++.++..
T Consensus 14 ~~~~~l~~~l~~~g~~v~~~------~---~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 75 (143)
T 3jte_A 14 TILQNIKFLLEIDGNEVLTA------S---SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT 75 (143)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------S---SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCceEEEe------C---CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 45777888888888765321 1 2334455555 5689999997643 35777888888764
No 349
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=27.79 E-value=1.8e+02 Score=24.89 Aligned_cols=59 Identities=3% Similarity=-0.057 Sum_probs=39.6
Q ss_pred cchHHHHHHHhh-CCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHA-IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~-~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...+++ .|..+.... . +....+..+++..+|+|++.... .++..++++.++..
T Consensus 16 ~~~~~l~~~L~~~~~~~v~~~~------~--~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 77 (153)
T 3cz5_A 16 IVREGYRRLIERRPGYAVVAEA------A--DAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWD 77 (153)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEE------S--SHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCCCcEEEEEe------C--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 456778888887 676654222 1 33455666777889999987543 35777888888764
No 350
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=27.28 E-value=24 Score=34.68 Aligned_cols=76 Identities=8% Similarity=-0.031 Sum_probs=39.6
Q ss_pred EEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHc
Q 036525 79 AVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEI 156 (783)
Q Consensus 79 vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~ 156 (783)
|+++.. ++.|.......+.+++++.|.++.... ...+...-...+..+.+.++|.||+....... ..++.+.+.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~~~~~ 77 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFP---ILSLARLKRYLENTTLAYLTDGLILASYDLTE-RFEEGRLPT 77 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECC---CCSCCCCC---------CCCSEEEEESCCCC-------CCSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEe---CCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-HHHHHHhhc
Confidence 566764 366777889999999999998875422 11111123345667777889998887654332 345555555
Q ss_pred Cc
Q 036525 157 GL 158 (783)
Q Consensus 157 g~ 158 (783)
|+
T Consensus 78 ~i 79 (276)
T 2h0a_A 78 ER 79 (276)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 351
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=27.14 E-value=1.7e+02 Score=24.40 Aligned_cols=58 Identities=10% Similarity=-0.032 Sum_probs=37.3
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh---hhHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP---SLGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~---~~~~~~~~~a~~~ 156 (783)
.....+...+++.|.++.... . +....+..+.+..+|+|++.... .++..++++.++.
T Consensus 20 ~~~~~l~~~L~~~g~~v~~~~-----~---~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 20 LAAATLRIQLESLGYDVLGVF-----D---NGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG 80 (140)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-----S---SHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeeEEEE-----C---CHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC
Confidence 456677777887787764321 1 23345555666779999987543 3566777777765
No 352
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=27.00 E-value=62 Score=33.75 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHH-------------h-h------CCc----eEeEEEecCCCCCh
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDAL-------------H-A------IDT----RVPYRSVISPLATD 119 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l-------------~-~------~g~----~v~~~~~i~~~~~~ 119 (783)
+-++..++++.|.+||+||--|-..|.+..+.|.+.= . . .|. --.....++.+.++
T Consensus 159 AiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d 238 (369)
T 1zz1_A 159 SVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGN 238 (369)
T ss_dssp HHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSSTTCCCTTCCCCGGGTTCEEEEEECTTCBH
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceEEeeecCCCCCH
Confidence 3334444456799999999999999998887776421 1 1 110 02224455666677
Q ss_pred hHHHHHHHH-----HhccCceEEEEEc
Q 036525 120 DQIEKELYK-----LFTMQTRVFIVHK 141 (783)
Q Consensus 120 ~d~~~~l~~-----l~~~~~dvii~~~ 141 (783)
.+|...+.+ +++-+||+||+.+
T Consensus 239 ~~yl~~~~~~v~p~l~~f~PdlIvvsa 265 (369)
T 1zz1_A 239 AAYLHAMDQVVLPALRAYRPQLIIVGS 265 (369)
T ss_dssp HHHHHHHHHTHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 777766654 4567899888854
No 353
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=27.00 E-value=2.3e+02 Score=23.25 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=38.7
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc-CceEEEEEcCh---hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFIVHKLP---SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~-~~dvii~~~~~---~~~~~~~~~a~~~g 157 (783)
.....+...++..|..+.. .. +....+..+.+. .+|+|++.... .++..++++.++..
T Consensus 16 ~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 16 ILLLDFESTLTDAGFLVTA---VS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREID 77 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEE---EC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcC
Confidence 4567778888888877642 11 233455666666 89999987543 35677888887764
No 354
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=26.51 E-value=2.2e+02 Score=24.27 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=39.9
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...++..|.+|... . +....+..+.+..+|+|++.... .+...++++.++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNIITF-------T--SPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE-------S--CHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEEe-------C--CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 55777888888888766421 1 33456667777889999997543 35677788887754
No 355
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=26.32 E-value=2.1e+02 Score=23.50 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=38.3
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+...++ .|..+... . +....+..+.+..+|+|++... ..++..++++.++..
T Consensus 15 ~~~~~l~~~l~-~~~~v~~~-------~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 15 TMRETLRLLLS-GEFDCTTA-------A--DGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEP 73 (133)
T ss_dssp HHHHHHHHHHT-TTSEEEEE-------S--SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHh-CCcEEEEE-------C--CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45666777777 66665321 1 3445566777788999999754 346788888888864
No 356
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=26.02 E-value=1.3e+02 Score=28.66 Aligned_cols=73 Identities=12% Similarity=-0.070 Sum_probs=47.6
Q ss_pred cCCeEEEEEEEeCCcCC--cchHHHHHHHhhCCceEeEEEecCC----CCChhHHHHHHHHHhcc-Cc-eEEEEEcChhh
Q 036525 74 FGWREAVPIYVDNQYGE--AMIPSLTDALHAIDTRVPYRSVISP----LATDDQIEKELYKLFTM-QT-RVFIVHKLPSL 145 (783)
Q Consensus 74 ~gw~~vaii~~d~~~G~--~~~~~~~~~l~~~g~~v~~~~~i~~----~~~~~d~~~~l~~l~~~-~~-dvii~~~~~~~ 145 (783)
+--.++++|..++.-|. .+.+.+.+.|++.|.+|...-.... ..+..|+...+.+...+ .. +.|++|+++..
T Consensus 17 ~~~mkiali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGTGiG 96 (231)
T 3c5y_A 17 FQGMKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGTGMG 96 (231)
T ss_dssp --CCEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESSSHH
T ss_pred hhcceEEEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHH
Confidence 34578999998888887 7779999999999999876544321 11234565555444333 33 57777777654
Q ss_pred H
Q 036525 146 G 146 (783)
Q Consensus 146 ~ 146 (783)
.
T Consensus 97 ~ 97 (231)
T 3c5y_A 97 S 97 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 357
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=25.99 E-value=2.3e+02 Score=25.13 Aligned_cols=66 Identities=9% Similarity=-0.105 Sum_probs=42.1
Q ss_pred EEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCC-ChhHHHHHHHHH-hccCc-eEEEEEcChhhHH
Q 036525 82 IYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLA-TDDQIEKELYKL-FTMQT-RVFIVHKLPSLGS 147 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~-~~~d~~~~l~~l-~~~~~-dvii~~~~~~~~~ 147 (783)
....|+.|..+-+.+.+.|++.|.+|...-..+.+. +..|+...+.+. .+... +.|++|+++.-..
T Consensus 4 ~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~s 72 (149)
T 3he8_A 4 GIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGIS 72 (149)
T ss_dssp EEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHH
T ss_pred EEEECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHH
Confidence 344678889999999999999999987654433222 234565555443 33344 4677777765433
No 358
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.99 E-value=2.2e+02 Score=23.87 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=38.6
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+...++..|..|. .. . +....+..+.+..+|+|++... ..++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~--~~-~------~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (137)
T 3cfy_A 15 SLAILYKQYVKDEPYDIF--HV-E------TGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQND 74 (137)
T ss_dssp THHHHHHHHTTTSSSEEE--EE-S------SHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCceEE--Ee-C------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 456778888888887653 11 1 2334555666678999998754 346777888888764
No 359
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=25.69 E-value=2.1e+02 Score=25.78 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=40.1
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCC-ChhHHHHHHHH-HhccCc-eEEEEEcChhhH
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLA-TDDQIEKELYK-LFTMQT-RVFIVHKLPSLG 146 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~-~~~d~~~~l~~-l~~~~~-dvii~~~~~~~~ 146 (783)
|....|..|..+.+.+.+.|++.|.+|...-..+.+. +..|+...+.+ +.+... +.|++|+++.-.
T Consensus 24 IaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~ 92 (166)
T 3s5p_A 24 VAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGI 92 (166)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred EEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHH
Confidence 3344678899999999999999999997655433221 22355555544 334444 466667666443
No 360
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=25.63 E-value=2.3e+02 Score=25.73 Aligned_cols=66 Identities=8% Similarity=-0.129 Sum_probs=41.7
Q ss_pred EEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCC-ChhHHHHHHHHH-hccCc-eEEEEEcChhhH
Q 036525 81 PIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLA-TDDQIEKELYKL-FTMQT-RVFIVHKLPSLG 146 (783)
Q Consensus 81 ii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~-~~~d~~~~l~~l-~~~~~-dvii~~~~~~~~ 146 (783)
|....|..|..+.+.+.+.|++.|.+|...-..+.+. +..|+...+.+. .+..+ +.|++|+++.-.
T Consensus 23 IaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 91 (169)
T 3ph3_A 23 IGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGI 91 (169)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred EEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 3344677888999999999999999987654433222 234565555443 33344 466677666443
No 361
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=25.53 E-value=2.6e+02 Score=24.94 Aligned_cols=68 Identities=6% Similarity=-0.094 Sum_probs=43.2
Q ss_pred EEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCC-CChhHHHHHHHHHhcc-Cc-eEEEEEcChhhH
Q 036525 79 AVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPL-ATDDQIEKELYKLFTM-QT-RVFIVHKLPSLG 146 (783)
Q Consensus 79 vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~-~~~~d~~~~l~~l~~~-~~-dvii~~~~~~~~ 146 (783)
|-|....|.-|..+-+.+.+.|++.|.+|...-..+.. .+..|+...+.+...+ .. +.|++|+++.-.
T Consensus 13 ~~i~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 83 (155)
T 1o1x_A 13 VKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGM 83 (155)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred eeEEEeeCchHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH
Confidence 34445577889999999999999999998765443221 1234555555443333 33 567777766543
No 362
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=25.04 E-value=2.8e+02 Score=23.50 Aligned_cols=83 Identities=10% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCeEEEEEEEeCCcCCcchHHHHHHHhhCC-ceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEE--cChhhHHHHHH
Q 036525 75 GWREAVPIYVDNQYGEAMIPSLTDALHAID-TRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVH--KLPSLGSRIFE 151 (783)
Q Consensus 75 gw~~vaii~~d~~~G~~~~~~~~~~l~~~g-~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~--~~~~~~~~~~~ 151 (783)
+.++.-++..|++- .....+.+.+++.| ..++.... +....+..+++..+|+|++. ....++..+++
T Consensus 12 ~~~~~~iLivdd~~--~~~~~l~~~L~~~~~~~~v~~~~--------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~ 81 (152)
T 3eul_A 12 QPEKVRVVVGDDHP--LFREGVVRALSLSGSVNVVGEAD--------DGAAALELIKAHLPDVALLDYRMPGMDGAQVAA 81 (152)
T ss_dssp --CCEEEEEECSSH--HHHHHHHHHHHHHSSEEEEEEES--------SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHH
T ss_pred CCceEEEEEEcCCH--HHHHHHHHHHhhCCCeEEEEEeC--------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q ss_pred HHHHcCccccceEEEEeC
Q 036525 152 KANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~ 169 (783)
+.++.. ..-.+.+.++
T Consensus 82 ~l~~~~--~~~~ii~~s~ 97 (152)
T 3eul_A 82 AVRSYE--LPTRVLLISA 97 (152)
T ss_dssp HHHHTT--CSCEEEEEES
T ss_pred HHHhcC--CCCeEEEEEc
No 363
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=24.90 E-value=1.8e+02 Score=24.76 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=50.7
Q ss_pred CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh-cc-CceEEEEEcChhhHHHHHHHHHHcCccccceEEEE
Q 036525 90 EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF-TM-QTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIM 167 (783)
Q Consensus 90 ~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~-~~-~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 167 (783)
.+..+.+++++++.|..|..+. |....+.+-- .. .+-.|+..|++..+..+++.-.+.|+..|-.+.+.
T Consensus 16 ~e~~~~l~~al~~~Gf~v~~~~---------d~~~~~~~~G~~~~~~~~il~~cnp~~a~~~l~~~p~~g~~lPcrv~v~ 86 (130)
T 1q9u_A 16 NETIERLEESLKQEGFGVLWQF---------SVTEKLQEKGLDFSTPMVILEVCNPQEAARVLNENLLVGYFLPCKLVVY 86 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---------EHHHHHHHTTCCCCSCEEEEEEECHHHHHHHHHHCGGGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEE---------CHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHhCHHHHhhcCeEEEEE
Confidence 4567888999999999986653 3444444432 22 45578889999999999999999998777655554
No 364
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.86 E-value=2.4e+02 Score=22.45 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=37.8
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...++..|..+.. .. +....+..+.+..+|++++.... .++..++++.++..
T Consensus 12 ~~~~~l~~~l~~~~~~v~~---~~------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 71 (116)
T 3a10_A 12 NIRELLKEELQEEGYEIDT---AE------NGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKK 71 (116)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEE---eC------CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccC
Confidence 4567777888888876531 11 23345556667789999987543 35677777777654
No 365
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=24.57 E-value=2.9e+02 Score=23.40 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=51.0
Q ss_pred CcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHH-HH-hccCceEEEEEcChhhHHHHHHHHHHcCccccceEEEE
Q 036525 90 EAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELY-KL-FTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIM 167 (783)
Q Consensus 90 ~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~-~l-~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 167 (783)
.+..+.+++++++.|..|..+. |....+. ++ ....+-.|+..|++..+..+++.-.+.|+..|-.+.+.
T Consensus 13 ~e~~~~l~~al~~~Gf~v~~~i---------d~~~~l~~k~g~~~~~~~il~~cnP~~a~~~l~~~p~~g~~lPcrv~V~ 83 (129)
T 1j3m_A 13 AEARAQVEAALKEEGFGILTEI---------DVAATLKAKLGLEKPPYLILGACNPNLAARALEALPEIGLLLPCNVVLR 83 (129)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---------EHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHCGGGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---------CHHHHHHHhcCCCCCCeEEEEECCHHHHHHHHHhCHHHHhhcCcEEEEE
Confidence 4668889999999999987653 3334332 22 12455678889999999999999999998877665554
Q ss_pred e
Q 036525 168 T 168 (783)
Q Consensus 168 ~ 168 (783)
.
T Consensus 84 e 84 (129)
T 1j3m_A 84 E 84 (129)
T ss_dssp E
T ss_pred E
Confidence 3
No 366
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=24.55 E-value=1e+02 Score=29.51 Aligned_cols=63 Identities=8% Similarity=-0.007 Sum_probs=44.9
Q ss_pred eEEEEEEE--eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC
Q 036525 77 REAVPIYV--DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL 142 (783)
Q Consensus 77 ~~vaii~~--d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~ 142 (783)
+.|+++.. ++.|.......+.+++++.|..+..... ..+...-...+..+.+.++|.||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES---QFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC---CCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 46888875 3567778889999999999988765431 222334456677888889998888764
No 367
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=24.43 E-value=1.6e+02 Score=28.38 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHcCCe--------------EEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEE
Q 036525 62 SQVGAITAIIKAFGWR--------------EAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRS 111 (783)
Q Consensus 62 ~~~~ai~~~l~~~gw~--------------~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~ 111 (783)
.-.+...++|+.-||+ ++.+++. +......++.+++.|++.|++|....
T Consensus 100 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~i~~ 162 (259)
T 3pam_A 100 LNAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQ-SLEEEKVALAFQSNLSRLGIHAEIRT 162 (259)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEES-SHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeC-CchHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3455566777888885 3444443 33445677788888888888876543
No 368
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=24.37 E-value=25 Score=34.93 Aligned_cols=87 Identities=10% Similarity=0.019 Sum_probs=43.4
Q ss_pred hhHHHHHHHHH-----HcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceE
Q 036525 62 SQVGAITAIIK-----AFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 136 (783)
Q Consensus 62 ~~~~ai~~~l~-----~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dv 136 (783)
..++.+++.+. ...-++|.++. |....+.+.+.|++.|.+|.....|.......+.......+...+.|+
T Consensus 122 ~~~e~L~~~l~l~~~~~~~g~~vLi~r-----g~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~ 196 (269)
T 3re1_A 122 DDSEALLDHPRLKQAIAVPGSRVLIMR-----GNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNG 196 (269)
T ss_dssp ----CGGGCHHHHHHHCSSSCEEEEEE-----CSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCE
T ss_pred CCHHHHHHhhhhcccccCCCCEEEEEc-----cCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCE
Confidence 34555666553 23446776655 334455677788888887755444322111111111223344456676
Q ss_pred EEEEcChhhHHHHHHHHH
Q 036525 137 FIVHKLPSLGSRIFEKAN 154 (783)
Q Consensus 137 ii~~~~~~~~~~~~~~a~ 154 (783)
|+ ++++..+..|+..+.
T Consensus 197 v~-ftS~s~v~~~~~~~~ 213 (269)
T 3re1_A 197 LV-VSSGQGFEHLLQLAG 213 (269)
T ss_dssp EE-CSSHHHHTTTHHHHG
T ss_pred EE-EcCHHHHHHHHHHhh
Confidence 44 556666666666554
No 369
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=24.37 E-value=1.3e+02 Score=30.56 Aligned_cols=79 Identities=9% Similarity=-0.025 Sum_probs=51.2
Q ss_pred eEEEEEEEeC----CcCCcchHHHHHHHhhCC---------ceEeEEEecCCCCChhHHHHHHHHHh-ccCceEEEEEcC
Q 036525 77 REAVPIYVDN----QYGEAMIPSLTDALHAID---------TRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFIVHKL 142 (783)
Q Consensus 77 ~~vaii~~d~----~~G~~~~~~~~~~l~~~g---------~~v~~~~~i~~~~~~~d~~~~l~~l~-~~~~dvii~~~~ 142 (783)
-+|+++.+.. .+|......++.++++.+ +++.... ...+...-...+.++. +.+.++||....
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d---~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYAD---SRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE---CTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEec---CCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 4788888653 357777888887777642 3443222 1223334456667777 788898887766
Q ss_pred hhhHHHHHHHHHHcCc
Q 036525 143 PSLGSRIFEKANEIGL 158 (783)
Q Consensus 143 ~~~~~~~~~~a~~~g~ 158 (783)
......+...+.+.++
T Consensus 82 s~~~~~~~~~~~~~~i 97 (358)
T 3hut_A 82 STVSMAAGSIYGKEGM 97 (358)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHCCC
Confidence 6667777777777775
No 370
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.27 E-value=2.2e+02 Score=22.94 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=38.3
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChh---hHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPS---LGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~---~~~~~~~~a~~~ 156 (783)
.....+.+.++..|.++... . +....+..+++..+|++++..... +...++++.++.
T Consensus 16 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 16 ALSATLRSALEGRGFTVDET---T------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp HHHHHHHHHHHHHTCEEEEE---C------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCceEEEe---c------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 45677788888888766421 1 233445566667899999876433 677888888876
No 371
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=24.22 E-value=1.5e+02 Score=30.88 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=49.0
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHH---------------------HhhCC-----ceEeEEEecCCCCChh
Q 036525 67 ITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDA---------------------LHAID-----TRVPYRSVISPLATDD 120 (783)
Q Consensus 67 i~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~---------------------l~~~g-----~~v~~~~~i~~~~~~~ 120 (783)
.+++++..|.+||+||--|-..|.+..+.|.+. ..+.| .--.....++.+.++.
T Consensus 150 Aa~~l~~~g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~ 229 (375)
T 1c3p_A 150 GIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDN 229 (375)
T ss_dssp HHHHHHHTTCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHH
T ss_pred HHHHHHHhCCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHH
Confidence 344566667799999999999999888877652 01111 0112244456677777
Q ss_pred HHHHHHHH-----HhccCceEEEEEcC
Q 036525 121 QIEKELYK-----LFTMQTRVFIVHKL 142 (783)
Q Consensus 121 d~~~~l~~-----l~~~~~dvii~~~~ 142 (783)
+|...+.+ +.+-+||+||+.+-
T Consensus 230 ~yl~a~~~~l~p~l~~F~PdlIvvsaG 256 (375)
T 1c3p_A 230 EFLFALEKSLEIVKEVFEPEVYLLQLG 256 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCCSEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 77765543 34678998888653
No 372
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=23.99 E-value=57 Score=32.33 Aligned_cols=33 Identities=6% Similarity=0.240 Sum_probs=23.1
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEe
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILS 37 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is 37 (783)
.+.++.+|+=+-.+..+.++-.+-+...+|+|.
T Consensus 64 ~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 64 VDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 345888887765665555566666778899886
No 373
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.88 E-value=1.7e+02 Score=24.87 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEEE-EeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC-------hh-hHHHH
Q 036525 79 AVPIY-VDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL-------PS-LGSRI 149 (783)
Q Consensus 79 vaii~-~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~-------~~-~~~~~ 149 (783)
|.|+| +.+-..+.+++.+.+.+++.|.++.....-. .+..++ .+.|.|++.++ +. ....+
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~--~~~~~l---------~~~d~iiig~pty~~g~~p~~~~~~f 69 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSD--VNIDEL---------LNEDILILGCSAMTDEVLEESEFEPF 69 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGG--CCHHHH---------TTCSEEEEEECCBTTTBCCTTTHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhh--CCHHHH---------hhCCEEEEEcCccCCCCCChHHHHHH
Q ss_pred HHHHHHcCccccceEEEEeCCcc
Q 036525 150 FEKANEIGLMNKGCVWIMTDGMT 172 (783)
Q Consensus 150 ~~~a~~~g~~~~~~~~i~~~~~~ 172 (783)
+.+.... +....+..+++.+|.
T Consensus 70 l~~l~~~-l~~k~~~~f~t~g~~ 91 (138)
T 5nul_A 70 IEEISTK-ISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHGGG-CTTCEEEEEEEESSS
T ss_pred HHHHHhh-cCCCEEEEEEecCCC
No 374
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.73 E-value=1.8e+02 Score=24.24 Aligned_cols=58 Identities=12% Similarity=-0.064 Sum_probs=38.6
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|..+... . +....+..+++..+|+|++.... .++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~~~~v~~~-------~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 18 DAREWLSTIISNHFPEVWSA-------G--DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp HHHHHHHHHHHTTCSCEEEE-------S--SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcEEEEE-------C--CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45677778888766554321 1 33445666677789999997643 35778888888765
No 375
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=23.60 E-value=2.6e+02 Score=22.93 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=34.7
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc-CceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~-~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|...+... . +....+..+.+. .+|+|++... ..++..++++.++..
T Consensus 16 ~~~~~l~~~L~~~g~~~v~~~-----~---~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~ 77 (129)
T 3h1g_A 16 TMRRIIKNTLSRLGYEDVLEA-----E---HGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS 77 (129)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE-----S---SHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCCcEEEEe-----C---CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 456677778888776532221 1 223344455444 6888887543 345777888877643
No 376
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=23.51 E-value=4.8e+02 Score=24.78 Aligned_cols=78 Identities=8% Similarity=0.012 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeC---CcCCcchHHHHHHHhhCCceEeEEE-ecCCCCChh----HHHHHHHHHhccCce
Q 036525 64 VGAITAIIKAFGWREAVPIYVDN---QYGEAMIPSLTDALHAIDTRVPYRS-VISPLATDD----QIEKELYKLFTMQTR 135 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~---~~G~~~~~~~~~~l~~~g~~v~~~~-~i~~~~~~~----d~~~~l~~l~~~~~d 135 (783)
....++.++..|.+-|-+..... .......+.+++.+++.|+++.... .++.+..+. .+...+...+..+++
T Consensus 21 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~ 100 (272)
T 2q02_A 21 IEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGAR 100 (272)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 35567777889999887753111 1123568889999999999985433 333332222 334444555567888
Q ss_pred EEEEEc
Q 036525 136 VFIVHK 141 (783)
Q Consensus 136 vii~~~ 141 (783)
.|+++.
T Consensus 101 ~v~~~~ 106 (272)
T 2q02_A 101 ALVLCP 106 (272)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 777653
No 377
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=23.43 E-value=1.4e+02 Score=28.85 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHcCCe--------------EEEEEEEe-CCcCCcchHHHHHHHhhCCceEeEEE
Q 036525 62 SQVGAITAIIKAFGWR--------------EAVPIYVD-NQYGEAMIPSLTDALHAIDTRVPYRS 111 (783)
Q Consensus 62 ~~~~ai~~~l~~~gw~--------------~vaii~~d-~~~G~~~~~~~~~~l~~~g~~v~~~~ 111 (783)
.-.+...++|+.-||+ ++-+++.+ +......++.+++.|++.|++|..+.
T Consensus 99 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~ 163 (258)
T 3lvu_A 99 TNLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEK 163 (258)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CCHHHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEEe
Confidence 3455566778888886 34455544 23445667778888888887776553
No 378
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=23.42 E-value=2.3e+02 Score=23.76 Aligned_cols=59 Identities=7% Similarity=-0.089 Sum_probs=37.6
Q ss_pred cchHHHHHHHhhC-CceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...++.. |..++... . +....+..+.+..+|+|++.... .++..++++.++..
T Consensus 20 ~~~~~l~~~L~~~~~~~~v~~~------~--~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 81 (143)
T 2qv0_A 20 LAQQELSWLINTHSQMEIVGSF------D--DGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFA 81 (143)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEE------S--CHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhCCCceEEEEe------C--CHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccC
Confidence 4566677777765 65543321 1 33445666677789999987543 35777888887753
No 379
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=23.30 E-value=3.9e+02 Score=25.68 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEEEEeC---------------CcCCcchHHHHHHHhhCC--ceEeEEEecCCCCChhHHHH
Q 036525 62 SQVGAITAIIKAFGWREAVPIYVDN---------------QYGEAMIPSLTDALHAID--TRVPYRSVISPLATDDQIEK 124 (783)
Q Consensus 62 ~~~~ai~~~l~~~gw~~vaii~~d~---------------~~G~~~~~~~~~~l~~~g--~~v~~~~~i~~~~~~~d~~~ 124 (783)
..+..++..|...|..++.++-.|. +-|+..++.+.+.+++.+ .++.. ++...+..+..
T Consensus 41 g~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~---~~~~~~~~~~~- 116 (249)
T 1jw9_B 41 GLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITP---VNALLDDAELA- 116 (249)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE---ECSCCCHHHHH-
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEE---EeccCCHhHHH-
Confidence 4577788888888999988875442 456677888888888754 33322 22222322332
Q ss_pred HHHHHhccCceEEEEEcChhhHHHHH-HHHHHcC
Q 036525 125 ELYKLFTMQTRVFIVHKLPSLGSRIF-EKANEIG 157 (783)
Q Consensus 125 ~l~~l~~~~~dvii~~~~~~~~~~~~-~~a~~~g 157 (783)
++. .+.|+||.+.........+ +.+++.|
T Consensus 117 ---~~~-~~~DvVi~~~d~~~~~~~l~~~~~~~~ 146 (249)
T 1jw9_B 117 ---ALI-AEHDLVLDCTDNVAVRNQLNAGCFAAK 146 (249)
T ss_dssp ---HHH-HTSSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred ---HHH-hCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 222 3689999888766665555 4455555
No 380
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=23.25 E-value=82 Score=31.46 Aligned_cols=33 Identities=0% Similarity=0.055 Sum_probs=22.0
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEe
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILS 37 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is 37 (783)
.+.++.+|+=+-.+..+.++-.+-+..++|+|.
T Consensus 81 ~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 81 MEFDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp TTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 345788887665555544555566667888887
No 381
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.20 E-value=2.6e+02 Score=29.90 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCC----------hhHHHHHHHHHhccCc
Q 036525 65 GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLAT----------DDQIEKELYKLFTMQT 134 (783)
Q Consensus 65 ~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~----------~~d~~~~l~~l~~~~~ 134 (783)
+++.++-.+++-|+|+|.. +. ...-.+.+.|.+.|++++.......+.. ..|+...-..+++.+|
T Consensus 302 ~~~~d~~~~l~Gkrv~i~~-~~----~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~~~v~~~D~~~le~~i~~~~p 376 (458)
T 3pdi_B 302 DAMLDTHFMLSSARTAIAA-DP----DLLLGFDALLRSMGAHTVAAVVPARAAALVDSPLPSVRVGDLEDLEHAARAGQA 376 (458)
T ss_dssp HHHHHHHHHHTTCEEEEEC-CH----HHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTTSSCEEESHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCEEEEEC-Cc----HHHHHHHHHHHHCCCEEEEEEECCCChhhhhCccCcEEeCCHHHHHHHHHhcCC
Confidence 4444544567888988743 33 3455677788899999987665321110 0244433334455566
Q ss_pred eEEEEEcC
Q 036525 135 RVFIVHKL 142 (783)
Q Consensus 135 dvii~~~~ 142 (783)
|+++-...
T Consensus 377 Dllig~~~ 384 (458)
T 3pdi_B 377 QLVIGNSH 384 (458)
T ss_dssp SEEEECTT
T ss_pred CEEEEChh
Confidence 66655443
No 382
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.08 E-value=2.8e+02 Score=22.77 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=38.2
Q ss_pred cchHHHHHHHhhCCc--eEeEEEecCCCCChhHHHHHHHHHhc-------cCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDT--RVPYRSVISPLATDDQIEKELYKLFT-------MQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~--~v~~~~~i~~~~~~~d~~~~l~~l~~-------~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+.+.+++.|. .+. .. . +....+..+.+ ..+|+|++.... .++..++++.++..
T Consensus 13 ~~~~~l~~~L~~~~~~~~v~--~~-----~--~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 13 ADIRLIQEALANSTVPHEVV--TV-----R--DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp HHHHHHHHHHHTCSSCCEEE--EE-----C--SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCCCceEE--EE-----C--CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 457778888888887 332 11 1 33445566665 679999987543 35777888888754
No 383
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.05 E-value=2.9e+02 Score=23.09 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=38.8
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcCh---hhHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKLP---SLGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~~---~~~~~~~~~a~~~ 156 (783)
.....+...+++.|..|... . +....+..+++ ..+|+|++.... .++..++++.++.
T Consensus 16 ~~~~~l~~~L~~~g~~v~~~-------~--~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 16 FQAKTIANILNKYGYTVEIA-------L--TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI 76 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-------S--SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEe-------c--ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC
Confidence 45777888888888776421 1 33445666666 689999997643 4677778777764
No 384
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=23.03 E-value=99 Score=31.80 Aligned_cols=90 Identities=20% Similarity=0.087 Sum_probs=55.4
Q ss_pred CeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCc---eEEEEEcChh--hHHHHH
Q 036525 76 WREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQT---RVFIVHKLPS--LGSRIF 150 (783)
Q Consensus 76 w~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~---dvii~~~~~~--~~~~~~ 150 (783)
.+++.+++....+. ...+.+.+.|++.++.+..........+.+.+...+..+++.++ |+||..+.+. |+..++
T Consensus 26 ~~~~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~ 104 (343)
T 3clh_A 26 KQKALIISDSIVAG-LHLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFA 104 (343)
T ss_dssp SSCEEEEEEHHHHT-TTHHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHH
T ss_pred CCEEEEEECCcHHH-HHHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHH
Confidence 37888888554433 35677777776665443221112222345567778888888888 9999776654 777777
Q ss_pred HHHHHcCccccceEEEEeC
Q 036525 151 EKANEIGLMNKGCVWIMTD 169 (783)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~ 169 (783)
......| ..++-|-|.
T Consensus 105 A~~~~rg---ip~i~IPTT 120 (343)
T 3clh_A 105 SSIYFRG---IDFINIPTT 120 (343)
T ss_dssp HHHBTTC---CEEEEEECS
T ss_pred HHHhccC---CCEEEeCCc
Confidence 6665555 345555555
No 385
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=22.68 E-value=3.5e+02 Score=24.67 Aligned_cols=66 Identities=6% Similarity=-0.144 Sum_probs=42.0
Q ss_pred EEEeCCcCCcchHHHHHHHhh--CCceEeEEEecCCCC-ChhHHHHHHHH-HhccCc-eEEEEEcChhhHH
Q 036525 82 IYVDNQYGEAMIPSLTDALHA--IDTRVPYRSVISPLA-TDDQIEKELYK-LFTMQT-RVFIVHKLPSLGS 147 (783)
Q Consensus 82 i~~d~~~G~~~~~~~~~~l~~--~g~~v~~~~~i~~~~-~~~d~~~~l~~-l~~~~~-dvii~~~~~~~~~ 147 (783)
....|..|..+-+.+.+.|++ .|.+|...-..+.+. +..||...+.+ +.+..+ +.|++|+++.-..
T Consensus 26 aIgsDhaG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG~s 96 (179)
T 3k7p_A 26 AIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGSGIGMS 96 (179)
T ss_dssp EEEECTGGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHH
T ss_pred EEEECchHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccCcHHHh
Confidence 344678899999999999999 999887654433222 23456555544 334444 4677777665433
No 386
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=22.66 E-value=36 Score=33.59 Aligned_cols=84 Identities=6% Similarity=-0.071 Sum_probs=51.6
Q ss_pred HHHcCCeEEEEEEE---eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHH
Q 036525 71 IKAFGWREAVPIYV---DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGS 147 (783)
Q Consensus 71 l~~~gw~~vaii~~---d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~ 147 (783)
++.-.-+.|+++.. ++.|...+...+.+++++.|..+.....-. +.. +....+..+.+.++|.||+........
T Consensus 6 L~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~--~~~~~~~~l~~~~vdgiIi~~~~~~~~ 82 (289)
T 3g85_A 6 KNSQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPY-KTD--CLHLEKGISKENSFDAAIIANISNYDL 82 (289)
T ss_dssp -----CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEE-CTT--CGGGCGGGSTTTCCSEEEESSCCHHHH
T ss_pred cccCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCC-Cch--hHHHHHHHHhccCCCEEEEecCCcccH
Confidence 33344568999987 356778889999999999998875433211 111 223456667788999999877655443
Q ss_pred HHHHHHHHcCc
Q 036525 148 RIFEKANEIGL 158 (783)
Q Consensus 148 ~~~~~a~~~g~ 158 (783)
.+. ++.+.|+
T Consensus 83 ~~~-~~~~~~i 92 (289)
T 3g85_A 83 EYL-NKASLTL 92 (289)
T ss_dssp HHH-HHCCCSS
T ss_pred HHH-HhccCCC
Confidence 333 3334453
No 387
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.66 E-value=2.6e+02 Score=23.08 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=37.3
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+...++..|.++. . .. +....+..+.+..+|+|++... ..++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~--~-~~------~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 73 (132)
T 3crn_A 14 AILDSTKQILEFEGYEVE--I-AA------TAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLR 73 (132)
T ss_dssp HHHHHHHHHHHHTTCEEE--E-ES------SHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCceEE--E-eC------CHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhC
Confidence 456777778887887653 1 11 2234556666778999998653 335677777777654
No 388
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=22.49 E-value=2.7e+02 Score=23.61 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=42.6
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHh---------ccCceEEEEEc--ChhhHHHHHHHHHHcCcc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLF---------TMQTRVFIVHK--LPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~---------~~~~dvii~~~--~~~~~~~~~~~a~~~g~~ 159 (783)
.....+.+.+++.|........ . +....+..++ +..+|+|++.. ...++..++++.++....
T Consensus 15 ~~~~~l~~~L~~~g~~~~v~~~----~---~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~ 87 (152)
T 3heb_A 15 GHARLIEKNIRRAGVNNEIIAF----T---DGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHT 87 (152)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEE----S---SHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCCcceEEEe----C---CHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccc
Confidence 4577888888888873222221 1 2334455553 56799999864 344678888888874322
Q ss_pred ccceEEEEeC
Q 036525 160 NKGCVWIMTD 169 (783)
Q Consensus 160 ~~~~~~i~~~ 169 (783)
..-.+.+.++
T Consensus 88 ~~~pii~~t~ 97 (152)
T 3heb_A 88 RRSPVVILTT 97 (152)
T ss_dssp TTSCEEEEES
T ss_pred cCCCEEEEec
Confidence 2223444444
No 389
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.19 E-value=2.9e+02 Score=22.06 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=36.5
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...++..|..+.. .. +....+..+.+..+|++++.... .++..++++.++..
T Consensus 11 ~~~~~l~~~l~~~g~~v~~---~~------~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~ 70 (121)
T 2pl1_A 11 LLRHHLKVQIQDAGHQVDD---AE------DAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSND 70 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCEEEE---eC------CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 4566777778877876531 11 23344556666788999886543 35667777777654
No 390
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.13 E-value=2.7e+02 Score=22.41 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=36.8
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHc
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEI 156 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~ 156 (783)
.....+...++..|..+.. . . +....+..+++..+|++++.... .++..++++.++.
T Consensus 12 ~~~~~l~~~L~~~~~~v~~--~-~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 12 LNMKLFHDLLEAQGYETLQ--T-R------EGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEE--E-S------CHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCcEEEE--e-C------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4567777888888876532 1 1 22344555666789999987543 3567788888774
No 391
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=22.07 E-value=97 Score=30.64 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=44.8
Q ss_pred eEEEEEE-EeCCcCCcchHHHHHHHhhCCc---eEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC
Q 036525 77 REAVPIY-VDNQYGEAMIPSLTDALHAIDT---RVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL 142 (783)
Q Consensus 77 ~~vaii~-~d~~~G~~~~~~~~~~l~~~g~---~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~ 142 (783)
++|+++- .++.|-....+.+++.+++.|. .+..... ..+.....-...+.++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5788772 2456777889999999999998 6543221 11223334566788888899999998763
No 392
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=21.67 E-value=2.3e+02 Score=26.94 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=36.3
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC--hhhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL--PSLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~--~~~~~~~~~~a~~~g 157 (783)
.....+...++..|.+|.. . . +....+..+.+..+|+|++... ..++..++++.++.+
T Consensus 34 ~~~~~l~~~L~~~g~~v~~--~-----~--~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 34 NIVELLSVSLKFQGFEVYT--A-----T--NGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADG 93 (250)
T ss_dssp HHHHHHHHHHHHTTCEEEE--E-----S--SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEEE--E-----C--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4566677777777766531 1 1 2334555566677888888744 335777777777765
No 393
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=21.64 E-value=1.7e+02 Score=26.60 Aligned_cols=93 Identities=8% Similarity=-0.045 Sum_probs=48.8
Q ss_pred cCchhhHHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhc----cC
Q 036525 58 LNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFT----MQ 133 (783)
Q Consensus 58 p~~~~~~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~----~~ 133 (783)
+.-..|++.+++.++..+..--.|+.+.-.-.+..++.+.+. .....+.....+.+. .+....+..+.+ .+
T Consensus 27 ~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~Ra~qTa~~l~~~--~~~~~~~~~~~L~~~---~~~~~~~~~l~~~~~~~~ 101 (172)
T 3f2i_A 27 QEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLAS--GLSCQLEESNHLAPN---GNIFNWLDYWLKPKNFPE 101 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHT--TSCSCEEECGGGSTT---CCHHHHHHHTHHHHCCCT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHhc--CCCCCeEECcccCCc---cCHHHHHHHHHHhccCCC
Confidence 344578999999998765433233433322222222322222 122233333333222 244444555542 55
Q ss_pred ceEEEEEcChhhHHHHHHHHHH
Q 036525 134 TRVFIVHKLPSLGSRIFEKANE 155 (783)
Q Consensus 134 ~dvii~~~~~~~~~~~~~~a~~ 155 (783)
.+.+++.+..+....++.....
T Consensus 102 ~~~vllVgH~P~l~~l~~~L~~ 123 (172)
T 3f2i_A 102 NAQIAIVGHEPCLSNWTEILLW 123 (172)
T ss_dssp TCEEEEEECTTHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHHHhc
Confidence 6778888888888877777654
No 394
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.53 E-value=1.4e+02 Score=29.03 Aligned_cols=72 Identities=13% Similarity=-0.038 Sum_probs=45.7
Q ss_pred CeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHH
Q 036525 76 WREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKA 153 (783)
Q Consensus 76 w~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a 153 (783)
-++|+++..+ +.|.....+.+.+++++.|..+..... ..+.. . + .+.+.|.||+....... ..++.+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~--~---~----~~~~vdgiI~~~~~~~~-~~~~~l 76 (277)
T 3cs3_A 8 TNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSG-KKSHL--F---I----PEKMVDGAIILDWTFPT-KEIEKF 76 (277)
T ss_dssp CCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEES-TTTTT--C---C----CTTTCSEEEEECTTSCH-HHHHHH
T ss_pred CcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeC-CCCHH--H---H----hhccccEEEEecCCCCH-HHHHHH
Confidence 3578888853 678788899999999999988765332 11111 0 0 01188988887653322 445666
Q ss_pred HHcCc
Q 036525 154 NEIGL 158 (783)
Q Consensus 154 ~~~g~ 158 (783)
.+.|+
T Consensus 77 ~~~~i 81 (277)
T 3cs3_A 77 AERGH 81 (277)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 66664
No 395
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=21.35 E-value=99 Score=30.94 Aligned_cols=33 Identities=3% Similarity=0.143 Sum_probs=23.0
Q ss_pred ccCCeEEEEccCCchhHHHHHcccCCCCccEEe
Q 036525 5 NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILS 37 (783)
Q Consensus 5 ~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is 37 (783)
.+.++.+|+=+-.+..+.++-.+-+..++|+|.
T Consensus 83 ~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 83 LKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 345788887665665555666666777898887
No 396
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=21.30 E-value=2.5e+02 Score=27.64 Aligned_cols=88 Identities=7% Similarity=0.112 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc--
Q 036525 64 VGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK-- 141 (783)
Q Consensus 64 ~~ai~~~l~~~gw~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~-- 141 (783)
...+++-.+.-|...+.++. |..|..+..+.+.+.-+..++.|..... -.+ ++ ++...+..++|.|++..
T Consensus 74 p~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kdf---iid--~~--qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKDF---VVQ--PY--QIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEESC---CCS--HH--HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECcc---ccC--HH--HHHHHHHcCCCEEEEeccc
Confidence 34466666677988888776 4455455566666655556777764432 122 22 46677789999998842
Q ss_pred -ChhhHHHHHHHHHHcCcc
Q 036525 142 -LPSLGSRIFEKANEIGLM 159 (783)
Q Consensus 142 -~~~~~~~~~~~a~~~g~~ 159 (783)
...+...++..+++.||.
T Consensus 146 l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 146 LEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 456788889999999974
No 397
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.09 E-value=2.7e+02 Score=24.82 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=42.4
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEc--ChhhHHHHHHHHHHcCccccceEEEEe
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHK--LPSLGSRIFEKANEIGLMNKGCVWIMT 168 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~--~~~~~~~~~~~a~~~g~~~~~~~~i~~ 168 (783)
.....+...+++.|..|. .. . +....+..+.+..+|+|++.. ...++..++++.++..- .-.+.+.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~--~~-----~--~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~--~~~ii~lt 86 (184)
T 3rqi_A 18 VFAGTLARGLERRGYAVR--QA-----H--NKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQP--DARILVLT 86 (184)
T ss_dssp HHHHHHHHHHHHTTCEEE--EE-----C--SHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCT--TCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEE--Ee-----C--CHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCC--CCCEEEEe
Confidence 456777788888887652 11 1 334566677778899999864 34457777777777542 22344444
Q ss_pred C
Q 036525 169 D 169 (783)
Q Consensus 169 ~ 169 (783)
+
T Consensus 87 ~ 87 (184)
T 3rqi_A 87 G 87 (184)
T ss_dssp S
T ss_pred C
Confidence 4
No 398
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=21.08 E-value=1.9e+02 Score=27.36 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=38.9
Q ss_pred cCCe-EEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEec-CCCC-Chh---H----HHHHHHHHhccCceEEEEEcCh
Q 036525 74 FGWR-EAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVI-SPLA-TDD---Q----IEKELYKLFTMQTRVFIVHKLP 143 (783)
Q Consensus 74 ~gw~-~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i-~~~~-~~~---d----~~~~l~~l~~~~~dvii~~~~~ 143 (783)
+||+ ++++|..+++- .....+.+.+.. ++.+... .+ +.+. +.+ + +...+.++.+. +|+|++.|++
T Consensus 2 ~~~~~~IG~i~p~s~~--~~e~~~~~~~~~-~v~~~~~-r~~~~~~~~~~~~~~~~~~l~~~a~~L~~~-~d~ivi~Cnt 76 (223)
T 2dgd_A 2 PGGRGRIGVILPANNA--GMEYDLWKMAPE-GVSIHST-RMKPTKGCEPENVEEFEKELKYSYSLLAEV-SDIIIYGRTY 76 (223)
T ss_dssp CCSSEEEEEEEETTCC--SHHHHHHHHCCT-TEEEEEE-EECCCSSSSCSCHHHHHHHHHHHHHHHTTT-CSEEEECCCT
T ss_pred CCCCceEEEEECCCcc--cHHHHHHHHccC-CeEEEEE-eeecCCCCCHHHHHHHHHHHHHHHHHhhcc-CCEEEEcCCH
Confidence 6888 99999987654 344445555432 4444332 33 3321 111 2 23445666777 9999999875
Q ss_pred h
Q 036525 144 S 144 (783)
Q Consensus 144 ~ 144 (783)
.
T Consensus 77 ~ 77 (223)
T 2dgd_A 77 G 77 (223)
T ss_dssp T
T ss_pred H
Confidence 5
No 399
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=21.06 E-value=1.6e+02 Score=29.99 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCeEEEEEEEeC----CcCCcchHHHHHHHhhCC-------ceEeEEEecCCCCChhHHHHHHHHHhc-cCceEEEEEcC
Q 036525 75 GWREAVPIYVDN----QYGEAMIPSLTDALHAID-------TRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFIVHKL 142 (783)
Q Consensus 75 gw~~vaii~~d~----~~G~~~~~~~~~~l~~~g-------~~v~~~~~i~~~~~~~d~~~~l~~l~~-~~~dvii~~~~ 142 (783)
.--+|+++.+.. .+|......++.++++.| +++.... ...+...-...+.++.+ .+.++||....
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d---~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 91 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVD---DESAPPKATELTTKLIQSEKADVLIGTVH 91 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEE---CTTCHHHHHHHHHCCCCCSCCSEEEECSS
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEec---CCCCHHHHHHHHHHHHhcCCceEEEcCCc
Confidence 456899998754 467888889999999887 3332221 12222233445566665 48899888777
Q ss_pred hhhHHHHHHHHHHcCc
Q 036525 143 PSLGSRIFEKANEIGL 158 (783)
Q Consensus 143 ~~~~~~~~~~a~~~g~ 158 (783)
......+...+.+.++
T Consensus 92 s~~~~~~~~~~~~~~i 107 (375)
T 4evq_A 92 SGVAMAMVKIAREDGI 107 (375)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHcCc
Confidence 7777777777777775
No 400
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=21.02 E-value=4.9e+02 Score=25.39 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=59.4
Q ss_pred HHHHHHHHH-HcCC-eEEEEEEEeCCcCCcchHHHHHH--------HhhC-CceEeEEEecCCCCChhHHHHHHHHHhcc
Q 036525 64 VGAITAIIK-AFGW-REAVPIYVDNQYGEAMIPSLTDA--------LHAI-DTRVPYRSVISPLATDDQIEKELYKLFTM 132 (783)
Q Consensus 64 ~~ai~~~l~-~~gw-~~vaii~~d~~~G~~~~~~~~~~--------l~~~-g~~v~~~~~i~~~~~~~d~~~~l~~l~~~ 132 (783)
.+.+..+++ ..+- .+|.+-....+...-....+... |+.. |.+|.+--. +. .....+..+++.
T Consensus 106 ~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~---~v---p~e~iv~aa~e~ 179 (262)
T 1xrs_B 106 MEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS---QV---ANEDFIKKAVEL 179 (262)
T ss_dssp HHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS---SB---CHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC---CC---CHHHHHHHHHHc
Confidence 344555554 3443 34444444444444444555545 8888 988865321 12 234556677788
Q ss_pred CceEEEEEcChh-------hHHHHHHHHHHcCccccceEEEEeCC
Q 036525 133 QTRVFIVHKLPS-------LGSRIFEKANEIGLMNKGCVWIMTDG 170 (783)
Q Consensus 133 ~~dvii~~~~~~-------~~~~~~~~a~~~g~~~~~~~~i~~~~ 170 (783)
++|+|.+.+... ....++.++++.|+...-.++++...
T Consensus 180 ~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~ 224 (262)
T 1xrs_B 180 EADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPR 224 (262)
T ss_dssp TCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTT
T ss_pred CCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence 999999987433 36667888888887543445555553
No 401
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=20.82 E-value=1.5e+02 Score=29.34 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=22.6
Q ss_pred cccCCeEEEEccCCchhHHHHHcccCCCCccEEe
Q 036525 4 LNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILS 37 (783)
Q Consensus 4 i~~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is 37 (783)
+.+.++.+|+=+-.+..+.++-.+-+..++|+|.
T Consensus 82 L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 82 FEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp HTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred HHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 3456788887665555555555566667888885
No 402
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=20.67 E-value=3.4e+02 Score=21.95 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=37.4
Q ss_pred cchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh--hhHHHHHHHHHHcC
Q 036525 91 AMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP--SLGSRIFEKANEIG 157 (783)
Q Consensus 91 ~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~--~~~~~~~~~a~~~g 157 (783)
.....+...++..|..+.. .. +....+..+.+..+|++++.... .++..++++.++.+
T Consensus 14 ~~~~~l~~~l~~~~~~v~~---~~------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (126)
T 1dbw_A 14 PVRKSLAFMLTMNGFAVKM---HQ------SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLK 73 (126)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCcEEEE---eC------CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 3566777778777876532 11 22345566677789999987543 35677788887754
No 403
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=20.39 E-value=34 Score=20.48 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=14.2
Q ss_pred CccchhHHHHHHHhhhcc
Q 036525 453 HQVGTSFWFSFSTMVFSQ 470 (783)
Q Consensus 453 ~~~~~~~~~~~~~l~~~~ 470 (783)
..+..++||++++++..+
T Consensus 7 ~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheecc
Confidence 457789999999988544
No 404
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.31 E-value=1.8e+02 Score=28.98 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=41.2
Q ss_pred CeEEEEEE-EeCCcCCcchHHHHHHHhhCCce----EeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC
Q 036525 76 WREAVPIY-VDNQYGEAMIPSLTDALHAIDTR----VPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL 142 (783)
Q Consensus 76 w~~vaii~-~d~~~G~~~~~~~~~~l~~~g~~----v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~ 142 (783)
-.||+|+- .++..=....++|+++|++.|.. |.+... ....+......+++++.+.++|+|+..+.
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~-~a~gd~~~~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYK-TAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEE-ECTTCHHHHHHHHHHHHTTCCSEEEEESH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEE-eCCCCHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 35788774 23333345667899999988742 333322 12223345667788999999999887543
No 405
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=20.19 E-value=3e+02 Score=24.80 Aligned_cols=85 Identities=8% Similarity=-0.120 Sum_probs=50.7
Q ss_pred hHHHHHHhcCCCcccceecCChhHHHHHHhcCcccCceeEEecchhHHHHHHhhcCCceEE--ecccccccceEEEecCC
Q 036525 519 FVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTM--IEPKFKTAGFGFVFPLH 596 (783)
Q Consensus 519 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~c~~l~~--v~~~~~~~~~~~~~~k~ 596 (783)
....++...++... ....++.....+.+..|. ..+++.... ........ .+.. +.+......++++.+|+
T Consensus 120 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~g~----gi~~~p~~~-~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~ 191 (222)
T 4ab5_A 120 LPKKILIPKNINPP-RRHSELTIAIIQLVASRR----GIAALPYWT-VMPYLEKG--YVVHRQITADGLQSKLYAAIRTE 191 (222)
T ss_dssp HHHHTTGGGTCCCC-EEECSCHHHHHHHHHTTS----CBEEEEHHH-HHHHHHTT--SCEEEEESTTCCEEEEEEEEEGG
T ss_pred HHHHHHHHcCCCCC-eEecCCHHHHHHHHHcCC----eEEEcchHH-hHHHhhcC--cEEEEecCCCccceEEEEEEeCC
Confidence 34455555666555 667888999999999997 566665433 33323222 1332 33333456778888888
Q ss_pred CCChHHHHHHHHhhh
Q 036525 597 SPLVHDVSKAILNVT 611 (783)
Q Consensus 597 spl~~~in~~il~l~ 611 (783)
......+...+..+.
T Consensus 192 ~~~~~~~~~f~~~l~ 206 (222)
T 4ab5_A 192 DTDKSYLNNFCQIIR 206 (222)
T ss_dssp GTTCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 666555555554443
No 406
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.18 E-value=63 Score=32.82 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=47.6
Q ss_pred cCCeEEEEEEEe--CCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcC
Q 036525 74 FGWREAVPIYVD--NQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKL 142 (783)
Q Consensus 74 ~gw~~vaii~~d--~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~ 142 (783)
-.-+.|+++..+ +.|...+...+++++++.|..+..... .. ...-...+..+.+.+.|.||+...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEA---NS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---CS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECC---CC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 344679999854 557788899999999999998865432 22 334556777888889999998766
No 407
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.14 E-value=3.9e+02 Score=25.86 Aligned_cols=87 Identities=10% Similarity=-0.125 Sum_probs=57.6
Q ss_pred CeEEEEEEEeCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcCh----hhHHHHHH
Q 036525 76 WREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLP----SLGSRIFE 151 (783)
Q Consensus 76 w~~vaii~~d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~----~~~~~~~~ 151 (783)
-.+|.+.....+...-....+...|+..|.+|.+-..- .+.+ ..+..+++.+||+|.+.+.. .....+++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~---vp~e---~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD---VPAE---EVLAAVQKEKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE---CCSH---HHHHHHHHHCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC---CCHH---HHHHHHHHcCCCEEEEEeeccCCHHHHHHHHH
Confidence 34666666666666666777788889999998654421 1222 34456667889999987743 35778888
Q ss_pred HHHHcCccccceEEEEeCC
Q 036525 152 KANEIGLMNKGCVWIMTDG 170 (783)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~~ 170 (783)
+.++.|.. -.+++++..
T Consensus 197 ~l~~~~~~--~~v~vGG~~ 213 (258)
T 2i2x_B 197 MLLENGIK--IPFACGGGA 213 (258)
T ss_dssp HHHTTTCC--CCEEEESTT
T ss_pred HHHhcCCC--CcEEEECcc
Confidence 89888864 334555443
Done!