BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036526
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CA9|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
Length = 192
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
+E + L M T F+W + +F++ +RQE S F + +K+ L
Sbjct: 29 LEQKVLEMEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 85
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
Y G+G G G HLSLF +A+ + + TL +LDQ +H
Sbjct: 86 YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 145
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
SFQ V+ +N E + ++ +D ++A V + G+
Sbjct: 146 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 192
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 2 LVIYPKGNKSKNAKDHISLYLAVAD-TSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
L IY G+ + H+SL+ V + W N L LLDQN + + DA
Sbjct: 83 LRIYLNGDGTGRGT-HLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVI--DAFR 139
Query: 61 KE------RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
+ +R N + + G F P+ +A N Y DD A V
Sbjct: 140 PDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 187
>pdb|1CA4|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1D00|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|G Chain G, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|H Chain H, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D0J|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
Length = 168
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
+E + L M T F+W + +F++ +RQE S F + +K+ L
Sbjct: 5 LEQKVLEMEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 61
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
Y G+G G G HLSLF +A+ + + TL +LDQ +H
Sbjct: 62 YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 121
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
SFQ V+ +N E + ++ +D ++A V + G+
Sbjct: 122 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 168
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 2 LVIYPKGNKSKNAKDHISLYLAVAD-TSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
L IY G+ + H+SL+ V + W N L LLDQN + + DA
Sbjct: 59 LRIYLNGDGTGRGT-HLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVI--DAFR 115
Query: 61 KE------RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
+ +R N + + G F P+ +A N Y DD A V
Sbjct: 116 PDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 163
>pdb|1CZY|A Chain A, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|B Chain B, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|C Chain C, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1D0A|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D01|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
Length = 168
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
+E + L M T F+W + +F + +RQE S F + +K+ L
Sbjct: 5 LEQKVLEMEASTYDGVFIWKISDFPR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 61
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
Y G+G G G HLSLF +A+ + + TL +LDQ +H
Sbjct: 62 YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 121
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
SFQ V+ +N E + ++ +D ++A V + G+
Sbjct: 122 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 168
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 2 LVIYPKGNKSKNAKDHISLYLAVAD-TSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
L IY G+ + H+SL+ V + W N L LLDQN + + DA
Sbjct: 59 LRIYLNGDGTGRGT-HLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVI--DAFR 115
Query: 61 KE------RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
+ +R N + + G F P+ +A N Y DD A V
Sbjct: 116 PDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 163
>pdb|1CZZ|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
Length = 187
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
+E + L M T F+W + +F + +RQE S F + +K+ L
Sbjct: 24 LEQKVLEMEASTYDGVFIWKISDFPR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 80
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
Y G+G G G HLSLF +A+ + + TL +LDQ +H
Sbjct: 81 YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 140
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
SFQ V+ +N E + ++ +D ++A V + G+
Sbjct: 141 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 187
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 2 LVIYPKGNKSKNAKDHISLYLAVAD-TSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
L IY G+ + H+SL+ V + W N L LLDQN + + DA
Sbjct: 78 LRIYLNGDGTGRGT-HLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVI--DAFR 134
Query: 61 KE------RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
+ +R N + + G F P+ +A N Y DD A V
Sbjct: 135 PDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 182
>pdb|1QSC|A Chain A, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|B Chain B, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|C Chain C, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
Length = 191
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
+E + L T F+W + +F++ +RQE S F + +K L
Sbjct: 28 LEQKVLEXEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKXCLRI 84
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
Y G+G G G HLSLF +A+ + + TL +LDQ +H
Sbjct: 85 YLNGDGTGRGTHLSLFFVVXKGPNDALLRWPFNQKVTLXLLDQNNREHVIDAFRPDVTSS 144
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
SFQ V+ N E + ++ +D ++A V + G+
Sbjct: 145 SFQRPVNDXNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVDLTGL 191
>pdb|1F3V|B Chain B, Crystal Structure Of The Complex Between The N-Terminal
Domain Of Tradd And The Traf Domain Of Traf2
Length = 171
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
+E + L T F+W + +F + +RQE S F + +K L
Sbjct: 8 LEQKVLEXEASTYDGVFIWKISDFPR---KRQEAVAGRIPAIFSPAFYTSRYGYKXCLRI 64
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH--KSFQGKVSS 212
Y G+G G G HLSLF +A+ + + TL +LDQ +H +F+ V+S
Sbjct: 65 YLNGDGTGRGTHLSLFFVVXKGPNDALLRWPFNQKVTLXLLDQNNREHVIDAFRPDVTS 123
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 127 FVWMVENFSKLDERRQE----------SQVFCAGEHKWKIV--LYPMGNGCGDGDHLSLF 174
+W + ++ + R+QE SQ F G +K+ +Y G+G G G HLSLF
Sbjct: 78 LIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 134
Query: 175 LAFEDSTLEAIKVYA---RYTLRILDQVGAKH 203
+A+ + + TL ++DQ ++
Sbjct: 135 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSRR 166
>pdb|4GHU|A Chain A, Crystal Structure Of Traf3CARDIF
Length = 198
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 127 FVWMVENFSKLDERRQE----------SQVFCAGEHKWKIV--LYPMGNGCGDGDHLSLF 174
+W + ++ + R+QE SQ F G +K+ +Y G+G G G HLSLF
Sbjct: 42 LIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 98
Query: 175 LAFEDSTLEAIKVYA---RYTLRILDQ 198
+A+ + + TL ++DQ
Sbjct: 99 FVIMRGEYDALLPWPFKQKVTLMLMDQ 125
>pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1ZMS|A Chain A, Lmp1 Protein Binds To Traf3 As A Structural Cd40
pdb|2GKW|A Chain A, Key Contacts Promote Recongnito Of Baff-R By Traf3
Length = 192
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 127 FVWMVENFSKLDERRQE----------SQVFCAGEHKWKIV--LYPMGNGCGDGDHLSLF 174
+W + ++ + R+QE SQ F G +K+ +Y G+G G G HLSLF
Sbjct: 42 LIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 98
Query: 175 LAFEDSTLEAIKVYA---RYTLRILDQ 198
+A+ + + TL ++DQ
Sbjct: 99 FVIMRGEYDALLPWPFKQKVTLMLMDQ 125
>pdb|1RF3|A Chain A, Structurally Distinct Recognition Motifs In Lymphotoxin-B
Receptor And Cd40 For Traf-Mediated Signaling
Length = 200
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 127 FVWMVENFSKLDERRQE----------SQVFCAGEHKWKIV--LYPMGNGCGDGDHLSLF 174
+W + ++ + R+QE SQ F G +K+ +Y G+G G G HLSLF
Sbjct: 42 LIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 98
Query: 175 LAFEDSTLEAIKVYA---RYTLRILDQVGAKH 203
+A+ + + TL ++DQ ++
Sbjct: 99 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSRR 130
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE-------SQVFCAGEHKWKIVL--YPM 161
+EG C S K +W V ++ E SQ F +++ Y
Sbjct: 17 LEGACYS-------GKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLN 69
Query: 162 GNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH 203
G+G G G HLSL+ +++ + R TL +LDQ G K+
Sbjct: 70 GDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKN 114
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
K+++ P+ + + + +L S T W +A + L +++ D S +
Sbjct: 60 KIMVMPRFYPDRPHQKSVGFFLQCNAESDST-SWSCHAQAVLKIINYRDDEKSFS----- 113
Query: 61 KERRRFNGL----KLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVK 106
RR + L + +WGF F+ D G+ DD F EVFV+
Sbjct: 114 ---RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 158
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
K+++ P+ + + + +L S T W +A + L +++ D S +
Sbjct: 50 KIMVMPRFYPDRPHQKSVGFFLQCNAESDST-SWSCHAQAVLKIINYRDDEKSFS----- 103
Query: 61 KERRRFNGL----KLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVK 106
RR + L + +WGF F+ D G+ DD F EVFV+
Sbjct: 104 ---RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
K+++ P+ + + + +L S T W +A + L +++ D S +
Sbjct: 50 KIMVMPRFYPDRPHQKSVGFFLQCNAESDST-SWSCHAQAVLKIINYRDDEKSFS----- 103
Query: 61 KERRRFNGL----KLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVK 106
RR + L + +WGF F+ D G+ DD F EVFV+
Sbjct: 104 ---RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
K+++ P+ + + + +L S T W +A + L +++ D S +
Sbjct: 48 KIMVMPRFYPDRPHQKSVGFFLQCNAESDST-SWSCHAQAVLKIINYRDDEKSFS----- 101
Query: 61 KERRRFNGLKL----EWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVK 106
RR + L +WGF F+ D G+ DD F EVFV+
Sbjct: 102 ---RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 146
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
K+++ P+ + + + +L S T W +A + L +++ D S +
Sbjct: 50 KIMVMPRFYPDRPHQKSVGFFLQCNAESDST-SWSCHAQAVLKIINYRDDEKSFS----- 103
Query: 61 KERRRFNGLKL----EWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVK 106
RR + L +WGF F+ D G+ DD F EVFV+
Sbjct: 104 ---RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
K+++ P+ + + + +L S T W +A + L +++ D S +
Sbjct: 36 KIMVMPRFYPDRPHQKSVGFFLQCNAESDST-SWSCHAQAVLKIINYRDDEKSFS----- 89
Query: 61 KERRRFNGLKL----EWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVK 106
RR + L +WGF F+ D G+ DD F EVFV+
Sbjct: 90 ---RRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 134
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 123 SGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTL 182
S K +W+++N ++ ++ + + W I GN D + S L + +TL
Sbjct: 143 SAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTL 202
Query: 183 E----AIKVYARYTLRILDQVGAKHKSFQGKVSS------LNEPETGFLVNDVCLVEAEV 232
+ K++ + +L ++ + +F G V S LN P TG C+ + +
Sbjct: 203 QWDEKMCKIFNITNMSVLPEIKSNCSNF-GLVKSEHVPDYLNIPITG------CIGDQQS 255
Query: 233 AVLG 236
A +G
Sbjct: 256 ACIG 259
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 123 SGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTL 182
S K +W+++N ++ ++ + + W I GN D + S L + +TL
Sbjct: 139 SAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGNCYTDVTNASRTLLMDINTL 198
Query: 183 E----AIKVYARYTLRILDQVGAKHKSFQGKVSS------LNEPETGFLVNDVCLVEAEV 232
+ K++ + +L ++ + +F G V S LN P TG C+ + +
Sbjct: 199 QWDEKMCKIFNITNMSVLPEIKSNCSNF-GLVKSEHVPDYLNIPITG------CIGDQQS 251
Query: 233 AVLG 236
A +G
Sbjct: 252 ACIG 255
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 84 FNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVEN 133
F DA++G+ + VF E+ V + + I + AKI+ K WM EN
Sbjct: 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKIS---KVYWMCEN 283
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 86 DASNGYPVDDTCVF-------------GAEVFVKERNIIEGECLSMAKITSGCKFVWMVE 132
D + G PV + V+ G E K ++I+ L +A SG K W+++
Sbjct: 88 DKTTGKPVYNAIVWQDTRTQKIVDELGGDEGAEKYKSIV---GLPLATYFSGPKIKWILD 144
Query: 133 NFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLS 172
N E+ ++ + W VL+ M G G H++
Sbjct: 145 NVEGAREKAEKGDLLFGNTDTW--VLWNMTGGTEGGVHVT 182
>pdb|1RO5|A Chain A, Crystal Structure Of The Ahl Synthase Lasi
Length = 201
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 152 HKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLR 194
H W++ + + +G L F D TLEA++ ARY+L+
Sbjct: 98 HIWELSRFAINSGQKGS------LGFSDCTLEAMRALARYSLQ 134
>pdb|3RB7|A Chain A, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|B Chain B, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|E Chain E, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|G Chain G, Crystal Structure Of Cbd12 From Calx1.2
Length = 298
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 167 DGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAK 202
D DH +F AF DS E + R+ L+++ GA+
Sbjct: 118 DDDHAGIF-AFTDSVFEITESVGRFELKVMRYSGAR 152
>pdb|3RB5|A Chain A, Crystal Structure Of Calcium Binding Domain Cbd12 Of
Calx1.1
pdb|3RB5|B Chain B, Crystal Structure Of Calcium Binding Domain Cbd12 Of
Calx1.1
Length = 298
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 167 DGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAK 202
D DH +F AF DS E + R+ L+++ GA+
Sbjct: 118 DDDHAGIF-AFTDSVFEITESVGRFELKVMRYSGAR 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,231,139
Number of Sequences: 62578
Number of extensions: 293182
Number of successful extensions: 621
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 32
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)