BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036526
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 23/139 (16%)
Query: 119 AKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFE 178
A+ KF W + NFS+ + R+ S VF G +KW+I+++P GN DHLS++L
Sbjct: 49 AEDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVS 105
Query: 179 D--STLEAIKVYARYTLRILDQVGAKH-------KSFQGK-----------VSSLNEPET 218
D S YA+++L +++Q+ ++ F + +S L +P
Sbjct: 106 DAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSR 165
Query: 219 GFLVNDVCLVEAEVAVLGI 237
G+LVND LVEAEVAV +
Sbjct: 166 GYLVNDTVLVEAEVAVRKV 184
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 8/107 (7%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
+++I+PKGN DH+S+YL V+D +SL +GW A L +++Q Y+V ++
Sbjct: 85 RILIFPKGNNV----DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET-- 138
Query: 61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKE 107
+ +FN + +WGF F+PL D S GY V+DT + AEV V++
Sbjct: 139 --QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 23/135 (17%)
Query: 123 SGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDST- 181
KF W + F++L+ R+ S VF G +KW+I+++P GN DHLS++L D+
Sbjct: 52 PSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVADAAN 108
Query: 182 -LEAIKVYARYTLRILDQVGAKH-------KSFQGK-----------VSSLNEPETGFLV 222
Y++++L +++QV ++ F + +S L EP G+LV
Sbjct: 109 LPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLV 168
Query: 223 NDVCLVEAEVAVLGI 237
ND L+EAEVAV +
Sbjct: 169 NDTVLIEAEVAVRKV 183
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
+++I+PKGN DH+S+YL VAD ++L +GW + L +++Q + YS+ ++
Sbjct: 84 RILIFPKGNNV----DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET-- 137
Query: 61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKE 107
+ +FN + +WGF F+PL + + GY V+DT + AEV V++
Sbjct: 138 --QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana
GN=At5g43560 PE=1 SV=1
Length = 1055
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 126 KFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFL--AFEDSTLE 183
K W +E FS +++R VF G +KW I++YP GC +HLSLFL A + L
Sbjct: 70 KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQ--GCDVCNHLSLFLCVAHHEKLLP 127
Query: 184 AIKVYARYTLRILDQVGAKHK 204
+A++T+ + ++ K K
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSK 148
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 2 LVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDS-YSVAQDAVG 60
++IYP+G N H+SL+L VA L GW + ++ + N+D S D +
Sbjct: 100 ILIYPQGCDVCN---HLSLFLCVAHHEKLLPGW--SHFAQFTIAVSNKDPKKSKHSDTL- 153
Query: 61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCV-FGAEV-FVKERNIIEGECL 116
RF + +WG+ +FI L + G+ D C+ A+V ++ER CL
Sbjct: 154 ---HRFWKKEHDWGWKKFIELPKLKE---GFIDDSGCLTIKAQVQVIRERVDRPFRCL 205
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 123 SGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAF-EDST 181
+ + W+V+NFS L E + S +F AG W+IVL+P GC ++ S+FL +
Sbjct: 50 AHASYSWVVKNFSTL-EDKTYSPLFKAGHTTWRIVLFP--KGCNQTEYASVFLEYLPQCK 106
Query: 182 LEAIKVY 188
+EAI+ Y
Sbjct: 107 VEAIRKY 113
>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC
OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1
Length = 1304
Score = 44.7 bits (104), Expect = 6e-04, Method: Composition-based stats.
Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 41/254 (16%)
Query: 5 YPKGNKSKNAKDHISLYLAVAD--TSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKE 62
Y G K + +S++++ D + T E + +L L++Q + S+ + +
Sbjct: 1059 YSNG-KDASTSGKLSIFISNCDLLNNPFTIFLEKSISYKLTLINQKNPNESIQKSS---- 1113
Query: 63 RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKIT 122
F+ + G+ FI L + + +NG+ V++T +K R I+ S T
Sbjct: 1114 SHTFSIKEFNHGYGSFIGLFSLLNPNNGFLVNNT--------IKVR--IDAAPTSPLVNT 1163
Query: 123 SGCKFVWMVENFS---KLDERRQE---SQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLA 176
+ + + FS + ++ E S +F + KW I +YPMG +++S+FL
Sbjct: 1164 YDKYNIGLNQAFSYSVPMMSKKSEPFISPIFMSCGRKWIIKIYPMGQP--SSNYMSVFLE 1221
Query: 177 FEDS-------TLEAI-KVYARYTLRILDQVGAKHKS-------FQGKVSSLNEPETGFL 221
+ D +LE I ++Y +++ Q KS F G VS+L +P+ GFL
Sbjct: 1222 YRDEGEENVHFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIG-VSTLMDPDMGFL 1280
Query: 222 VNDVCLVEAEVAVL 235
VND ++ + L
Sbjct: 1281 VNDTIILNVSILQL 1294
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 4 IYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKER 63
IYP G S N ++S++L D + + +S+L+ + Y V +
Sbjct: 1205 IYPMGQPSSN---YMSVFLEYRDEGEENVHFSLELISQLY--PEQSIKYWV--------Q 1251
Query: 64 RRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVF 104
RFN +G+ +FI + D G+ V+DT + +
Sbjct: 1252 YRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVSIL 1292
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2
Length = 501
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 29/130 (22%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
+E + L M T F+W + +F++ +RQE S F + +K+ L
Sbjct: 338 LEQKVLEMEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 394
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
Y G+G G G HLSLF +A+ + + TL +LDQ +H
Sbjct: 395 YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 454
Query: 205 SFQGKVSSLN 214
SFQ V+ +N
Sbjct: 455 SFQRPVNDMN 464
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2 OS=Mus musculus GN=Traf2 PE=1 SV=1
Length = 501
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 127 FVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL--YPMGNGCGDGDHLSLF 174
F+W + +F++ +RQE S F + +K+ L Y G+G G G HLSLF
Sbjct: 354 FIWKISDFTR---KRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLF 410
Query: 175 LAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------KSFQGKVSSLN 214
+A+ + + TL +LD +H SFQ VS +N
Sbjct: 411 FVVMKGPNDALLQWPFNQKVTLMLLDHNNREHVIDAFRPDVTSSSFQRPVSDMN 464
>sp|Q717B3|TDPZ1_MOUSE TD and POZ domain-containing protein 1 OS=Mus musculus GN=Tdpoz1
PE=2 SV=2
Length = 365
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 127 FVWMVENFSKLD---ERRQESQVFCAGEHK---WKIVLYPMGNGCGDGDHLSLFLAFEDS 180
+ W + NFS +RR S VF + E+K W + +YP G D+LS++L S
Sbjct: 22 YKWTISNFSFCMGGIQRRITSPVFSSEENKEVAWCLRVYPKGADKESKDYLSVYLVLL-S 80
Query: 181 TLEAIKVYARYTLRILDQVGAKHKSFQGKVSS--LNEPETGF 220
L++ V+A++ I++ G K++ + + L ++GF
Sbjct: 81 HLQS-PVWAKFKFWIINSQGEKYQKTKSPIVECFLTYEQSGF 121
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis
thaliana GN=BPM3 PE=1 SV=1
Length = 408
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 143 ESQVFCAGEHKWKIVLYPMGNGCGD-GDHLSLFLAFEDSTLEAIKVYARYTLRILDQVG- 200
+S +F G + W I YP G D ++SLF+A + + + A + L ++DQ G
Sbjct: 47 QSDIFSVGGYDWAIYFYPDGKNPEDQSSYISLFIALASDSND---IRALFELTLMDQSGK 103
Query: 201 AKHK 204
KHK
Sbjct: 104 GKHK 107
>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis
thaliana GN=BPM4 PE=1 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 144 SQVFCAGEHKWKIVLYPMGNGCGDGD-HLSLFLAFEDSTLEAIKVYARYTLRILDQVG-A 201
S F G ++W I YP G D ++S+F+A + V A + L +LDQ G
Sbjct: 70 SDTFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALAS---DGTDVRALFELSLLDQSGKG 126
Query: 202 KHK 204
KHK
Sbjct: 127 KHK 129
>sp|Q1ZXR0|Y8444_DICDI TNF receptor-associated factor family protein DDB_G0268444
OS=Dictyostelium discoideum GN=DDB_G0268444 PE=2 SV=1
Length = 502
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 129 WMVENFSKLDERRQESQV----FCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEA 184
W + N+ L E R+ ++ F + K+K+V+YP G DG + SLFL + ++
Sbjct: 373 WSISNY--LTESRKYRKITSPSFKIYDKKFKLVIYPQGK--DDGSYTSLFL--KSDSINP 426
Query: 185 IKVYARYTL 193
IKV+ ++ L
Sbjct: 427 IKVFYKFVL 435
>sp|Q86K46|Y7243_DICDI TNF receptor-associated factor family protein DDB_G0277243
OS=Dictyostelium discoideum GN=DDB_G0277243 PE=3 SV=1
Length = 423
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 119 AKITSGCKFVWMVENFSK-----LDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSL 173
+ITS K W +EN+S+ + R +S FC G + + LYP G + +S+
Sbjct: 282 VEITSRYKGNWTIENWSQKLTHYPNNERLKSPYFCIGSKSFYVGLYPNGFNQTNAGFMSI 341
Query: 174 FLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGF 220
FL + + V R++ +L K F+ +GF
Sbjct: 342 FLHLYEKPSTSTTV-VRFSFELLHSDPTKSLKFEKSNKYTENKGSGF 387
>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis
thaliana GN=BPM1 PE=1 SV=1
Length = 407
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 144 SQVFCAGEHKWKIVLYPMGNGCGD-GDHLSLFLAFEDSTLEAIKVYARYTLRILDQVG-A 201
S F G + W I YP G D ++SLF+A E V A + L ++DQ G
Sbjct: 57 SDTFMVGGYSWAIYFYPDGKSPEDNSSYVSLFIALAS---EGADVRALFELTLVDQSGNG 113
Query: 202 KHK 204
KHK
Sbjct: 114 KHK 116
>sp|Q6AGR0|GLPK_LEIXX Glycerol kinase OS=Leifsonia xyli subsp. xyli (strain CTCB07)
GN=glpK PE=3 SV=1
Length = 506
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 116 LSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLS 172
L +A SG K VW++EN + ER + + W VL+ + G G H +
Sbjct: 129 LPLATYFSGTKIVWILENVEGVRERAERGDLLFGTTESW--VLWNLTGGTDGGVHAT 183
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis
thaliana GN=BPM5 PE=1 SV=1
Length = 410
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 147 FCAGEHKWKIVLYPMGNGCGD-GDHLSLFLAFEDSTLEAIKVYARYTLRILDQVG-AKHK 204
F G ++W I YP G D ++S+F+A E +V A + L ++DQ G KHK
Sbjct: 55 FSVGGYQWGIFFYPDGKNPEDNSSYVSVFIALAS---EGTEVRALFELALVDQSGKGKHK 111
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1
SV=1
Length = 1230
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 127 FVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGN 163
F W + ++++L + S F G+ +W I+L+P GN
Sbjct: 42 FTWNIPDWNELTNPKYNSPRFRIGDFEWDILLFPQGN 78
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 25/106 (23%)
Query: 2 LVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG- 60
++++P+GN +K +++YL L + +D D Y AQ A+G
Sbjct: 71 ILLFPQGNHNKG----VAVYLEPHPEEKLD-----ETTGEMVPVDP--DWYCCAQFAIGI 119
Query: 61 -------------KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPV 93
K RFN L +WGF I L S G P+
Sbjct: 120 SRPGNGDTINLINKSHHRFNALDTDWGFANLIDLNNLKHPSKGRPL 165
>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis
thaliana GN=BPM2 PE=1 SV=1
Length = 406
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 144 SQVFCAGEHKWKIVLYPMGNGCGDGD-HLSLFLAFEDSTLEAIKVYARYTLRILDQVG-A 201
S F G + W I YP G D ++SLF+A E V A + L ++DQ G
Sbjct: 56 SDTFMVGGYSWAIYFYPDGKSPEDNSVYVSLFIALAS---EGADVRALFELTLVDQSGNE 112
Query: 202 KHK 204
+HK
Sbjct: 113 RHK 115
>sp|Q09879|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp5 PE=3 SV=3
Length = 1108
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 126 KFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAI 185
+F W ++++ +LD RR S F G ++KI +P G G S+FL + S E +
Sbjct: 57 RFTWHIKSWHELD-RRAVSPQFAVGSRQFKITYFPQGTLQSAG-FTSIFLEYIPSEEEKL 114
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis
thaliana GN=BPM6 PE=1 SV=1
Length = 415
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 144 SQVFCAGEHKWKIVLYPMGNGCGD-GDHLSLFLAFEDSTLEAIKVYARYTLRILDQVG-A 201
S F G ++W I +YP G D ++S+F+ E +V A + L ++DQ G
Sbjct: 59 SDNFSVGGYQWTIFVYPDGKNPEDNSSYVSVFIVLAS---ECTEVRALFELSLVDQSGKG 115
Query: 202 KHK 204
KHK
Sbjct: 116 KHK 118
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 137 LDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLF-LAFEDSTLEAIKVYARYTLRI 195
LD+ RQ+ F + E WK+ ++ G+HL L +T+ + YARY+L+
Sbjct: 16 LDKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKS 75
Query: 196 LDQV 199
+D V
Sbjct: 76 IDPV 79
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 OS=Mus musculus GN=Traf3 PE=1 SV=2
Length = 567
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 127 FVWMVENFSKLDERRQE----------SQVFCAGEHKWKIV--LYPMGNGCGDGDHLSLF 174
+W + ++ + R+QE SQ F G +K+ +Y G+G G G HLSLF
Sbjct: 417 LIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 473
Query: 175 LAFEDSTLEAIKVYA---RYTLRILDQVGAK 202
+A+ + + TL ++DQ ++
Sbjct: 474 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSR 504
>sp|O68008|BACC_BACLI Bacitracin synthase 3 OS=Bacillus licheniformis GN=bacC PE=3 SV=1
Length = 6359
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 17 HISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFD 76
H S+ A+ D L F ++ N + + +VA+ E + + L +
Sbjct: 381 HFSISAALDDQLKLLFIYDENVYDTTIIETLEKHIITVAEQVAEDETQTLRDINLVSKEE 440
Query: 77 QFIPLEAFNDASNGYPVD 94
Q L+ FND GYP D
Sbjct: 441 QHRILDTFNDTKTGYPKD 458
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2
Length = 568
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 127 FVWMVENFSKLDERRQE----------SQVFCAGEHKWKIV--LYPMGNGCGDGDHLSLF 174
+W + ++ + R+QE SQ F G +K+ +Y G+G G G HLSLF
Sbjct: 418 LIWKIRDYKR---RKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 474
Query: 175 LAFEDSTLEAIKVYA---RYTLRILDQVGAK 202
+A+ + + TL ++DQ ++
Sbjct: 475 FVIMRGEYDALLPWPFKQKVTLMLMDQGSSR 505
>sp|O43818|U3IP2_HUMAN U3 small nucleolar RNA-interacting protein 2 OS=Homo sapiens
GN=RRP9 PE=1 SV=1
Length = 475
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 24/150 (16%)
Query: 1 KLVIYPKGNKSKNAK-----DHI--------SLYLAVADTSSLTFGWEVNAVSRLFLLDQ 47
KL + P+ K K H+ YLA D S L WE + L+
Sbjct: 180 KLHVIPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTG 239
Query: 48 NQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKE 107
++D+ S G RR D+ + + +N A N Y +FG + V
Sbjct: 240 HRDAVS------GLAFRRGTHQLYSTSHDRSV--KVWNVAENSYV---ETLFGHQDAVAA 288
Query: 108 RNIIEGECLSMAKITSGCKFVWMVENFSKL 137
+ + EC A G VW + S+L
Sbjct: 289 LDALSRECCVTAGGRDGTVRVWKIPEESQL 318
>sp|O94972|TRI37_HUMAN E3 ubiquitin-protein ligase TRIM37 OS=Homo sapiens GN=TRIM37 PE=1
SV=2
Length = 964
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 128 VWMVENFSKLDERRQE--SQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAI 185
+++ENFS L +R S W++ +YP GNG G +LS+FL E
Sbjct: 280 TFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETS 339
Query: 186 KVYARYTL 193
K R +
Sbjct: 340 KYEYRVEM 347
>sp|Q6PCX9|TRI37_MOUSE E3 ubiquitin-protein ligase TRIM37 OS=Mus musculus GN=Trim37 PE=2
SV=1
Length = 961
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 128 VWMVENFSKLDERRQE--SQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAI 185
+++ENFS L +R S W++ +YP GNG G +LS+FL E
Sbjct: 280 TFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETS 339
Query: 186 KVYARYTL 193
K R +
Sbjct: 340 KYEYRVEM 347
>sp|Q972V9|URE23_SULTO Urease subunit gamma/beta OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=ureAB PE=3 SV=2
Length = 219
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 42 LFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLE-AFNDASNGYPVDDTCVFG 100
+FL + Q+ ++ A RRR GLKL + I ++ A G ++D + G
Sbjct: 1 MFLTPREQEKLLISWAAEVARRRRVKGLKLNYAEAMAIIVDYILEKAREGVKMED-IIKG 59
Query: 101 AEVFVKERNIIEG--ECLSMAKITS----GCKFVWMVENFSKLDERRQESQVFCAGE 151
A+ + E +++EG E L + ++ + G K V V N K ++ + + GE
Sbjct: 60 AQELLTENDVMEGVPELLDLVQVEATFPDGTKLV-TVRNPIKSSKKTLNTYIIKQGE 115
>sp|Q54C11|Y3202_DICDI TNF receptor-associated factor family protein DDB_G0293202
OS=Dictyostelium discoideum GN=DDB_G0293202 PE=2 SV=1
Length = 437
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 126 KFVWMVENFSKLDERRQ---ESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTL 182
K VW ++NFSK ++ S V G H + + LYP G + LSL+L
Sbjct: 305 KSVWDIKNFSKRQFQKGFYFSSPVITVGHHSFHLWLYPNGET-SPSNSLSLYLVL----T 359
Query: 183 EAIKVYARYTLRILDQVG 200
+ K + +++ I + G
Sbjct: 360 KGEKTFVNFSISIKNHNG 377
>sp|Q60MK8|UBP7_CAEBR Ubiquitin carboxyl-terminal hydrolase 7 OS=Caenorhabditis briggsae
GN=usp-7 PE=3 SV=1
Length = 1129
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 66 FNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGC 125
F+ +++WGF + + +GY +DD +I C A + +G
Sbjct: 132 FHNTEVDWGFSNYDQYDTLTSPKDGYVIDD--------------VIRLRCRFTADVPTGA 177
Query: 126 KFVW 129
++W
Sbjct: 178 NYMW 181
>sp|Q5SCX8|RPOB_HUPLU DNA-directed RNA polymerase subunit beta OS=Huperzia lucidula
GN=rpoB PE=3 SV=1
Length = 1080
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 45 LDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDT------CV 98
L+QN+D Y + F ++LE F +FI + N ++DT +
Sbjct: 5 LEQNEDIYVLPD---------FRKIQLE-AFHRFINQGIMEELDNFPKIEDTDQEFEFQL 54
Query: 99 FGAEVFVKERNIIEGECLSMAKITSGCKF 127
FG + ++ E ++ EG+ L + IT+ CK
Sbjct: 55 FGEKYYLLEPSVKEGDSLYESIITNSCKL 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,539,927
Number of Sequences: 539616
Number of extensions: 3639076
Number of successful extensions: 6433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 6396
Number of HSP's gapped (non-prelim): 76
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)