Query 036526
Match_columns 241
No_of_seqs 267 out of 1851
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 99.9 3.5E-27 1.2E-31 181.4 14.0 119 122-241 16-154 (155)
2 3ivv_A Speckle-type POZ protei 99.9 3E-26 1E-30 174.2 11.5 114 121-236 7-144 (145)
3 4gjh_A TNF receptor-associated 99.9 5.4E-25 1.9E-29 172.8 5.9 117 121-237 20-175 (178)
4 1lb6_A TNF receptor-associated 99.9 6E-24 2E-28 164.1 9.6 115 122-236 2-157 (160)
5 1d00_A Tumor necrosis factor r 99.9 2.1E-24 7.3E-29 167.9 6.0 115 122-236 16-167 (168)
6 1ca9_A TRAF2, protein (TNF rec 99.9 1E-24 3.4E-29 173.4 4.1 115 122-236 40-191 (192)
7 4ghu_A TNF receptor-associated 99.9 5.6E-24 1.9E-28 169.4 5.3 117 121-237 36-189 (198)
8 2foj_A Ubiquitin carboxyl-term 99.9 1E-22 3.5E-27 156.3 10.5 103 1-108 48-151 (155)
9 2gkw_A TNF receptor-associated 99.9 8.7E-24 3E-28 167.8 3.5 116 122-237 37-189 (192)
10 1flk_A TNF receptor associated 99.9 3.2E-23 1.1E-27 168.7 4.1 117 122-238 73-226 (228)
11 3ivv_A Speckle-type POZ protei 99.9 2.3E-22 8E-27 152.7 8.4 96 1-105 47-142 (145)
12 3hqi_A Speckle-type POZ protei 99.9 9.2E-22 3.1E-26 167.4 11.4 113 122-236 4-140 (312)
13 2f1z_A Ubiquitin carboxyl-term 99.8 2.9E-21 1E-25 175.2 10.8 118 122-240 28-165 (522)
14 4gjh_A TNF receptor-associated 99.8 1.3E-20 4.6E-25 147.7 4.8 103 1-105 63-172 (178)
15 1d00_A Tumor necrosis factor r 99.8 1.4E-19 4.9E-24 140.5 5.1 103 1-105 58-165 (168)
16 1ca9_A TRAF2, protein (TNF rec 99.8 2.7E-19 9.1E-24 142.0 5.0 103 1-105 82-189 (192)
17 1lb6_A TNF receptor-associated 99.8 1.2E-18 4.2E-23 134.2 7.6 104 1-107 44-158 (160)
18 4ghu_A TNF receptor-associated 99.7 2.8E-19 9.5E-24 142.3 3.2 105 1-108 79-190 (198)
19 3hqi_A Speckle-type POZ protei 99.7 2.6E-18 8.9E-23 146.0 9.5 99 1-108 43-142 (312)
20 2gkw_A TNF receptor-associated 99.7 4.2E-19 1.4E-23 140.7 3.6 102 1-105 79-186 (192)
21 2f1z_A Ubiquitin carboxyl-term 99.7 3.8E-18 1.3E-22 154.7 7.0 102 1-107 60-162 (522)
22 1flk_A TNF receptor associated 99.7 1.9E-18 6.5E-23 140.5 4.3 102 1-105 115-222 (228)
23 4gwm_A Meprin A subunit beta; 99.0 2.3E-09 8E-14 97.3 10.3 108 122-234 403-565 (592)
24 4gwm_A Meprin A subunit beta; 98.2 1.2E-06 4E-11 79.8 5.7 88 15-104 448-564 (592)
25 3v0r_A Major allergen ALT A 1; 33.9 8.6 0.0003 27.4 -0.0 28 122-149 9-38 (133)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.95 E-value=3.5e-27 Score=181.39 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=98.7
Q ss_pred ccCcEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCC-CCCCeEEEEEEecCCCCC-CceEEEEEEEEEEcCC
Q 036526 122 TSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGC-GDGDHLSLFLAFEDSTLE-AIKVYARYTLRILDQV 199 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~-~~~~~ls~~L~~~~~~~~-~~~~~~~f~~~l~~~~ 199 (241)
...++|+|+|+|||.++ +.++|+.|.+||++|+|++||+|+.. +..+|||+||+|..+..+ .|+++|+|+|+|+||.
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~l~l~~~~ 94 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR 94 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEEEEECCSS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEEEEEEcCC
Confidence 35689999999999996 78999999999999999999999765 357899999999765444 7999999999999998
Q ss_pred CCc-ce------eeE--------eeeeecc---CCCCCeEeCCEEEEEEEEEEEeeeccC
Q 036526 200 GAK-HK------SFQ--------GKVSSLN---EPETGFLVNDVCLVEAEVAVLGISTAM 241 (241)
Q Consensus 200 ~~~-~~------~f~--------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~~~~~ 241 (241)
++. +. .|. .+||+++ ++++|||+||+|+|+|+|+|.+++|++
T Consensus 95 ~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 95 DDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp CGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 764 21 343 2689988 348999999999999999999999975
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.94 E-value=3e-26 Score=174.22 Aligned_cols=114 Identities=26% Similarity=0.435 Sum_probs=97.7
Q ss_pred eccCcEEEEEEccccccC---CceEeeCcEEECCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEE
Q 036526 121 ITSGCKFVWMVENFSKLD---ERRQESQVFCAGEH---KWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLR 194 (241)
Q Consensus 121 ~~~~~~~~~~I~nfs~~~---~~~~~S~~f~~gg~---~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~ 194 (241)
+...++|+|+|.|||.++ ++.++||+|.+||+ +|+|++||+|+..+..+|+|+||+|.+. +.|+++|+|+|+
T Consensus 7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~--~~w~v~a~f~l~ 84 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFS 84 (145)
T ss_dssp CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC--SSSEEEEEEEEE
T ss_pred cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC--CCCcEEEEEEEE
Confidence 367789999999999987 47899999999996 9999999999876667899999999873 379999999999
Q ss_pred EEcCCCCcce--------eeE-------eeeeecc---CCCCCeEeCCEEEEEEEEEEEe
Q 036526 195 ILDQVGAKHK--------SFQ-------GKVSSLN---EPETGFLVNDVCLVEAEVAVLG 236 (241)
Q Consensus 195 l~~~~~~~~~--------~f~-------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~ 236 (241)
|+||.++.+. +|. .+||+++ +++++||+||+|+|+|+|+|++
T Consensus 85 llnq~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 85 ILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EECTTSCEEEEEECSSCEEEETTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred EEecCCCceeeecccceEEecCCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence 9999986432 342 2689988 3568999999999999999975
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.91 E-value=5.4e-25 Score=172.82 Aligned_cols=117 Identities=25% Similarity=0.376 Sum_probs=96.3
Q ss_pred eccCcEEEEEEccccccCC-------ceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEE
Q 036526 121 ITSGCKFVWMVENFSKLDE-------RRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVY 188 (241)
Q Consensus 121 ~~~~~~~~~~I~nfs~~~~-------~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~ 188 (241)
.+..|+|+|+|.|||.+++ ..++||.|.+| ||+|+|++||+|+..+.++|+|+||+|.+ +.. .+|+++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 4678999999999999863 27999999999 99999999999988766799999999976 322 389999
Q ss_pred EEEEEEEEcCCCCc-ce-----------eeE------------eeeeecc---CCCCCeEeCCEEEEEEEEEEEee
Q 036526 189 ARYTLRILDQVGAK-HK-----------SFQ------------GKVSSLN---EPETGFLVNDVCLVEAEVAVLGI 237 (241)
Q Consensus 189 ~~f~~~l~~~~~~~-~~-----------~f~------------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~ 237 (241)
|+|+|+|+||.++. +. .|. .+||+++ ++.+|||+||+|+|+|+|.|.++
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 99999999998653 11 121 2578888 34579999999999999987654
No 4
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.90 E-value=6e-24 Score=164.11 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=92.3
Q ss_pred ccCcEEEEEEccccccCC-----c--eEeeCcEEEC--CeEEEEEEEcCCCCCC-CCCeEEEEEEecC-CCC-C-CceEE
Q 036526 122 TSGCKFVWMVENFSKLDE-----R--RQESQVFCAG--EHKWKIVLYPMGNGCG-DGDHLSLFLAFED-STL-E-AIKVY 188 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~~-----~--~~~S~~f~~g--g~~W~i~~yp~g~~~~-~~~~ls~~L~~~~-~~~-~-~~~~~ 188 (241)
...|+|+|+|.|||.+++ + .++||+|.+| ||+|+|++||+|+..+ +++|+|+||++.+ +.. . +|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 357899999999999863 3 8999999999 9999999999998754 3789999999986 332 2 79999
Q ss_pred EEEEEEEEcCCCCc---ce--e---------eE-------------eeeeeccC-CCCCeEeCCEEEEEEEEEEEe
Q 036526 189 ARYTLRILDQVGAK---HK--S---------FQ-------------GKVSSLNE-PETGFLVNDVCLVEAEVAVLG 236 (241)
Q Consensus 189 ~~f~~~l~~~~~~~---~~--~---------f~-------------~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~ 236 (241)
|+|+|+|+||.+.. +. . |. .+||++++ .++|||+||+|+|+|+|+|+.
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~ 157 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF 157 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC--
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEee
Confidence 99999999998751 10 1 21 25788883 457899999999999999874
No 5
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.90 E-value=2.1e-24 Score=167.92 Aligned_cols=115 Identities=28% Similarity=0.430 Sum_probs=94.7
Q ss_pred ccCcEEEEEEccccccCC-----c--eEeeCcEE--ECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEE
Q 036526 122 TSGCKFVWMVENFSKLDE-----R--RQESQVFC--AGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYA 189 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~~-----~--~~~S~~f~--~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~ 189 (241)
...++|+|+|.|||.+++ + .++||+|. +|||+|+|++||+|+..+.++|+|+||++.+ +.. .+|+++|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 578999999999999863 2 38999996 7999999999999987666799999999977 433 3899999
Q ss_pred EEEEEEEcCCCCcce-----------eeE------------eeeeeccCCCC--CeEeCCEEEEEEEEEEEe
Q 036526 190 RYTLRILDQVGAKHK-----------SFQ------------GKVSSLNEPET--GFLVNDVCLVEAEVAVLG 236 (241)
Q Consensus 190 ~f~~~l~~~~~~~~~-----------~f~------------~~~~~~~~~~~--~yl~~d~l~i~~~V~v~~ 236 (241)
+|+|+|+||.+.++. .|. .+||++++.++ |||+||+|+|+|+|+|.+
T Consensus 96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEecC
Confidence 999999999986532 131 25799985433 899999999999998743
No 6
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.90 E-value=1e-24 Score=173.35 Aligned_cols=115 Identities=27% Similarity=0.426 Sum_probs=96.1
Q ss_pred ccCcEEEEEEccccccCC-----c--eEeeCcEEE--CCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEE
Q 036526 122 TSGCKFVWMVENFSKLDE-----R--RQESQVFCA--GEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYA 189 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~~-----~--~~~S~~f~~--gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~ 189 (241)
...++|+|+|.|||.+++ + .++||.|.+ |||+|+|++||+|+..+.++|+|+||++.+ +.. .+|+++|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 578999999999999863 2 599999999 999999999999987666789999999987 333 4899999
Q ss_pred EEEEEEEcCCCCcce-----------eeE------------eeeeeccCC--CCCeEeCCEEEEEEEEEEEe
Q 036526 190 RYTLRILDQVGAKHK-----------SFQ------------GKVSSLNEP--ETGFLVNDVCLVEAEVAVLG 236 (241)
Q Consensus 190 ~f~~~l~~~~~~~~~-----------~f~------------~~~~~~~~~--~~~yl~~d~l~i~~~V~v~~ 236 (241)
+|+|+|+||.++.+. .|. .+||++++. .+|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEecC
Confidence 999999999987432 132 257888843 58999999999999998854
No 7
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.89 E-value=5.6e-24 Score=169.43 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=96.3
Q ss_pred eccCcEEEEEEccccccCC-------ceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEE
Q 036526 121 ITSGCKFVWMVENFSKLDE-------RRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVY 188 (241)
Q Consensus 121 ~~~~~~~~~~I~nfs~~~~-------~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~ 188 (241)
.+.+|.|+|+|.|||.+++ +.++||.|.+| ||+|+|++||+|+..+.++|||+||.+.+ +.+ ..|++.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 3678999999999999863 58999999999 99999999999988766789999999986 322 389999
Q ss_pred EEEEEEEEcCCCCc-ce-----------ee------------EeeeeeccC-CCCCeEeCCEEEEEEEEEEEee
Q 036526 189 ARYTLRILDQVGAK-HK-----------SF------------QGKVSSLNE-PETGFLVNDVCLVEAEVAVLGI 237 (241)
Q Consensus 189 ~~f~~~l~~~~~~~-~~-----------~f------------~~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~~ 237 (241)
|+|+|.|+||.+.. +. .| ..+||++++ .++|||+||+|+|+|+|+|+..
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~ 189 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL 189 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEeccC
Confidence 99999999998642 11 12 125788873 3479999999999999998754
No 8
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.88 E-value=1e-22 Score=156.32 Aligned_cols=103 Identities=19% Similarity=0.389 Sum_probs=83.1
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP 80 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~ 80 (241)
||++||+|+..++.++|||+||+|... ..+.+|+++|+|+|+|+||.++..+..+. ..+.|.....+|||++||+
T Consensus 48 ~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~~~~~~~~~~~----~~~~F~~~~~~wG~~~Fi~ 122 (155)
T 2foj_A 48 KIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR----ISHLFFHKENDWGFSNFMA 122 (155)
T ss_dssp EEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCSSCGGGCEEEE----EEEEEETTBCEEEEEEEEE
T ss_pred EEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcCCCCcceEEec----cEEEeCCCCCCEeECCeEE
Confidence 689999998621357899999999643 44667999999999999999876443333 4788987678999999999
Q ss_pred ccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526 81 LEAFNDASNGYPVDDTCVFGAEVFV-KER 108 (241)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~~ 108 (241)
|++|++|++|||+||+|+|+|+|+| ++.
T Consensus 123 ~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 123 WSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp HHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred HHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 9999988899999999999999999 553
No 9
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.88 E-value=8.7e-24 Score=167.81 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=94.9
Q ss_pred ccCcEEEEEEccccccC-----Cc--eEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEE
Q 036526 122 TSGCKFVWMVENFSKLD-----ER--RQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYA 189 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~-----~~--~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~ 189 (241)
...++|+|+|.|||.++ ++ .++||+|.+| ||+|+|++||+|+..++++|+|+||++.+ +.. .+|++.|
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 47899999999999986 23 5999999999 99999999999987667899999999986 332 2899999
Q ss_pred EEEEEEEcCCCCc-ce-----------eeE------------eeeeeccC-CCCCeEeCCEEEEEEEEEEEee
Q 036526 190 RYTLRILDQVGAK-HK-----------SFQ------------GKVSSLNE-PETGFLVNDVCLVEAEVAVLGI 237 (241)
Q Consensus 190 ~f~~~l~~~~~~~-~~-----------~f~------------~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~~ 237 (241)
+|+|+|+||.+.. +. .|. .+||++++ .++|||+||+|+|+|+|.|.+.
T Consensus 117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~~~ 189 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL 189 (192)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCTTS
T ss_pred EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcCCC
Confidence 9999999998863 21 131 25788873 3468999999999999987553
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.87 E-value=3.2e-23 Score=168.71 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=96.5
Q ss_pred ccCcEEEEEEccccccCC-------ceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC-C-CceEEE
Q 036526 122 TSGCKFVWMVENFSKLDE-------RRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL-E-AIKVYA 189 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~~-------~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~-~-~~~~~~ 189 (241)
...++|+|+|.|||.+++ ..++||+|.+| ||+|+|++||+|+..+.++|+|+||++.+ +.. . +|++.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 478999999999999862 27999999999 99999999999987767899999999886 333 2 899999
Q ss_pred EEEEEEEcCCCCc-ce-----------eeE------------eeeeeccC-CCCCeEeCCEEEEEEEEEEEeee
Q 036526 190 RYTLRILDQVGAK-HK-----------SFQ------------GKVSSLNE-PETGFLVNDVCLVEAEVAVLGIS 238 (241)
Q Consensus 190 ~f~~~l~~~~~~~-~~-----------~f~------------~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~~~ 238 (241)
+|+|+|+||.+.. +. .|. .+||++++ .++|||+||+|+|+|+|+|.++.
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~~ 226 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLP 226 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTTSC
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEccccc
Confidence 9999999998764 21 132 25788873 44799999999999999886653
No 11
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.87 E-value=2.3e-22 Score=152.65 Aligned_cols=96 Identities=30% Similarity=0.429 Sum_probs=82.0
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP 80 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~ 80 (241)
||++||+|+.. +.++|||+||+|.+. .+|+++|+|+|+|+||.++........ ..++|.. ..+|||++||+
T Consensus 47 ~i~~yP~G~~~-~~~~~lSlyL~l~~~----~~w~v~a~f~l~llnq~~~~~~~~~~~---~~~~F~~-~~~wG~~~Fi~ 117 (145)
T 3ivv_A 47 CLRVNPKGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMESQ---RAYRFVQ-GKDWGFKKFIR 117 (145)
T ss_dssp EEEEETTCSSG-GGTTEEEEEEEEEEC----SSSEEEEEEEEEEECTTSCEEEEEECS---SCEEEET-TCEEEEEEEEE
T ss_pred EEEEEcCCCCC-CCCCeEEEEEEEcCC----CCCcEEEEEEEEEEecCCCceeeeccc---ceEEecC-CCCcCHHHeEE
Confidence 58999999873 467999999999874 369999999999999998876543322 4688874 58999999999
Q ss_pred ccccccCCCCeeecCeEEEEEEEEE
Q 036526 81 LEAFNDASNGYPVDDTCVFGAEVFV 105 (241)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v 105 (241)
+++|+++++|||+||+|+|+|+|+|
T Consensus 118 ~~~L~~~~~~yl~dD~l~I~~~V~V 142 (145)
T 3ivv_A 118 RDFLLDEANGLLPDDKLTLFCEVSV 142 (145)
T ss_dssp HHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred hhhhccccCCcEeCCEEEEEEEEEE
Confidence 9999877899999999999999998
No 12
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.86 E-value=9.2e-22 Score=167.42 Aligned_cols=113 Identities=27% Similarity=0.440 Sum_probs=91.9
Q ss_pred ccCcEEEEEEccccccC---CceEeeCcEEECCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEEE
Q 036526 122 TSGCKFVWMVENFSKLD---ERRQESQVFCAGEH---KWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRI 195 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~---~~~~~S~~f~~gg~---~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~l 195 (241)
...++|+|+|.|||.++ ++.++||+|.+||+ +|+|.+||+|+..++++|+|+||+|.+. +.|+++|+|+|+|
T Consensus 4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~--~~~~v~a~~~~~l 81 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSI 81 (312)
T ss_dssp EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC--CC-CEEEEEEEEE
T ss_pred eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC--CCCcEEEEEEEEE
Confidence 34689999999999996 67899999999995 9999999999877677999999999862 2789999999999
Q ss_pred EcCCCCcce--------eeE-------eeeeecc---CCCCCeEeCCEEEEEEEEEEEe
Q 036526 196 LDQVGAKHK--------SFQ-------GKVSSLN---EPETGFLVNDVCLVEAEVAVLG 236 (241)
Q Consensus 196 ~~~~~~~~~--------~f~-------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~ 236 (241)
+||+|.... +|. .+||+|+ ++.+|||+||+|+|+|+|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~ 140 (312)
T 3hqi_A 82 LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQ 140 (312)
T ss_dssp ECTTSCEEEEEECSSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEE
T ss_pred EeCCCCcccccccCCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEe
Confidence 999986432 232 2689988 3567999999999999999995
No 13
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=175.17 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=93.9
Q ss_pred ccCcEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCCC-CCCeEEEEEEecCCCCC-CceEEEEEEEEEEcCC
Q 036526 122 TSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCG-DGDHLSLFLAFEDSTLE-AIKVYARYTLRILDQV 199 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~~-~~~~ls~~L~~~~~~~~-~~~~~~~f~~~l~~~~ 199 (241)
...++|+|+|.|||.+++ .++|++|.+||++|+|.+||+|+..+ +.+|+|+||.|.+...+ .|+++|+|+|.|+||.
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~l~n~~ 106 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR 106 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEEECCTT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEEcCC
Confidence 346899999999999985 89999999999999999999997543 56899999999875444 8999999999999998
Q ss_pred CCcc-e------eeE--------eeeeecc---CCCCCeEeCCEEEEEEEEEEEeeecc
Q 036526 200 GAKH-K------SFQ--------GKVSSLN---EPETGFLVNDVCLVEAEVAVLGISTA 240 (241)
Q Consensus 200 ~~~~-~------~f~--------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~~~~ 240 (241)
++.. . +|. .+||+++ ++++|||+||+++|+|+|+|...+|.
T Consensus 107 ~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~ 165 (522)
T 2f1z_A 107 DDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 165 (522)
T ss_dssp CGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred CCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence 6532 1 242 2578887 36789999999999999999776653
No 14
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.81 E-value=1.3e-20 Score=147.73 Aligned_cols=103 Identities=23% Similarity=0.382 Sum_probs=80.7
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEEEEcCCCCceeEEec--cCCceeeEEcC----CccCc
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQDSYSVAQD--AVGKERRRFNG----LKLEW 73 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~-~~~~w~~~~~~~l~l~n~~~~~~~~~~~--~~~~~~~~F~~----~~~~w 73 (241)
||++||+|+.. +.++|||+||+|++.+. ...+|+++|+|+|+|+||.++..+.... + ....+.|.. ...+|
T Consensus 63 ~i~~yP~G~~~-~~~~~lSlyL~l~~~~~d~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~-~~~~~~F~~p~~~~~~~w 140 (178)
T 4gjh_A 63 CARAYLNGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKA-DPNSSSFKRPDGEMNIAS 140 (178)
T ss_dssp EEEEETTCCGG-GTTTEEEEEEEEBCCTTGGGSCSSCCCEEEEEECCTTSSCCCEEEEEEC-CTTCGGGSCCSSSBCCCE
T ss_pred EEEEEECCCCC-CCCCEEEEEEEEecCCCCcccCCceEEEEEEEEEcCCCCcceeEEeecc-CCccccccCCcccccCCc
Confidence 58999999873 45799999999987542 2357999999999999999775443220 0 001355652 24689
Q ss_pred cccceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526 74 GFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105 (241)
Q Consensus 74 G~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v 105 (241)
||.+||++++|++|++|||+||+|+|+|+|.|
T Consensus 141 G~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 141 GCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp EEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred ChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 99999999999987899999999999999988
No 15
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.77 E-value=1.4e-19 Score=140.52 Aligned_cols=103 Identities=25% Similarity=0.384 Sum_probs=77.7
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcC----CccCccc
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLT-FGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNG----LKLEWGF 75 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~-~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~----~~~~wG~ 75 (241)
||++||+|+.. +.++|||+||++++.+..+ .+|+++|+|+|+|+||.+++............+.|.. ...+|||
T Consensus 58 ~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~ 136 (168)
T 1d00_A 58 CLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 136 (168)
T ss_dssp EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEE
T ss_pred EEEEEeCCCCC-CCCcEEEEEEEEecCCCCccCCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCc
Confidence 58999999873 4679999999998765443 5799999999999999986533221000000124542 3468999
Q ss_pred cceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526 76 DQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105 (241)
Q Consensus 76 ~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v 105 (241)
.+||++++|+++ +|||+||+|+|+|+|+|
T Consensus 137 ~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v 165 (168)
T 1d00_A 137 PLFCPVSKMEAK-NSYVRDDAIFIKAIVDL 165 (168)
T ss_dssp EEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred ceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence 999999999953 39999999999999987
No 16
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.76 E-value=2.7e-19 Score=142.00 Aligned_cols=103 Identities=25% Similarity=0.390 Sum_probs=78.3
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEc----CCccCccc
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLT-FGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFN----GLKLEWGF 75 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~-~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~----~~~~~wG~ 75 (241)
||++||+|+.. +.++|||+||++.+++..+ .+|+++|+|+|.|+||.+++............+.|. ....+|||
T Consensus 82 ~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~ 160 (192)
T 1ca9_A 82 CLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 160 (192)
T ss_dssp EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEE
T ss_pred EEEEEeCCCCC-CCCCEEEEEEEEccCCCCCcCCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcCh
Confidence 58999999873 4679999999998865443 679999999999999998753221100000012353 12468999
Q ss_pred cceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526 76 DQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105 (241)
Q Consensus 76 ~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v 105 (241)
++||++++|++ ++|||+||+++|+|+|+|
T Consensus 161 ~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V 189 (192)
T 1ca9_A 161 PLFCPVSKMEA-KNSYVRDDAIFIKAIVDL 189 (192)
T ss_dssp EEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred hheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence 99999999986 589999999999999987
No 17
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.75 E-value=1.2e-18 Score=134.21 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=74.6
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCce--eEEec--cCCceeeEEcC-----Cc
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSY--SVAQD--AVGKERRRFNG-----LK 70 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~--~~~~~--~~~~~~~~F~~-----~~ 70 (241)
+|++||+|+..+..++|||+||++++.+.. ..+|+++|+|+|+|+||.++.. +.... +.+ ....|.. ..
T Consensus 44 ~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~-~~~~f~~p~~~~~~ 122 (160)
T 1lb6_A 44 CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKP-ELLAFQRPTIPRNP 122 (160)
T ss_dssp EEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCT-TSGGGSCCSSSBCS
T ss_pred EEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecCC-cchhccCCcccCCC
Confidence 589999998632247899999999876432 3469999999999999987631 11100 000 0122332 12
Q ss_pred cCccccceeeccccccCCCCeeecCeEEEEEEEEE-ee
Q 036526 71 LEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KE 107 (241)
Q Consensus 71 ~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v-~~ 107 (241)
.+|||++||++++|+ ++|||+||+++|+|+|+| .+
T Consensus 123 ~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 123 KGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred CCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 379999999999999 689999999999999998 54
No 18
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.75 E-value=2.8e-19 Score=142.26 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=79.0
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCceeEEec--cCC---ceeeEEcCCccCcc
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSYSVAQD--AVG---KERRRFNGLKLEWG 74 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~~~~~~--~~~---~~~~~F~~~~~~wG 74 (241)
||++||||+.. +.++|||+||.+++++.+ ...|++.|+|+|.|+||.++..+.... +.. ...+.|.....+||
T Consensus 79 ~i~~yPnG~~~-~~~~~lSlyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG 157 (198)
T 4ghu_A 79 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 157 (198)
T ss_dssp EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEE
T ss_pred EEEEEeCCCCC-CCCCeEEEEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcC
Confidence 58999999873 467999999999876432 347999999999999998765443221 000 00112333356899
Q ss_pred ccceeeccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526 75 FDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KER 108 (241)
Q Consensus 75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v-~~~ 108 (241)
|++||++++|+ ++|||+||+++|+|+|.| ..+
T Consensus 158 ~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 158 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp EEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred chhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence 99999999999 589999999999999999 554
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.75 E-value=2.6e-18 Score=146.03 Aligned_cols=99 Identities=29% Similarity=0.418 Sum_probs=81.5
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP 80 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~ 80 (241)
||.+||+|+.. +.++|+|+||+|.+. .+|+++|+|+|+|+||+++........ ..++|.. ..+|||++||+
T Consensus 43 ~i~~yP~G~~~-~~~~~lslyL~~~~~----~~~~v~a~~~~~l~~~~~~~~~~~~~~---~~~~F~~-~~~wG~~~Fi~ 113 (312)
T 3hqi_A 43 CLRVNPKGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMESQ---RAYRFVQ-GKDWGFKKFIR 113 (312)
T ss_dssp EEEEETTCCC---CTTEEEEEEEEEEC----CC-CEEEEEEEEEECTTSCEEEEEECS---SCEEECT-TCEEEEEEEEE
T ss_pred EEEEECCCCCc-cCCCcEEEEEEEcCC----CCCcEEEEEEEEEEeCCCCcccccccC---CceeCCC-CCCcCHHHhcc
Confidence 58999999873 467999999999864 358999999999999998876544322 4678875 46899999999
Q ss_pred ccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526 81 LEAFNDASNGYPVDDTCVFGAEVFV-KER 108 (241)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~~ 108 (241)
|++|+++++|||+||+++|+|+|+| ++.
T Consensus 114 ~~~L~~~~~~yl~dD~l~i~~~v~v~~~~ 142 (312)
T 3hqi_A 114 RGFLLDEANGLLPDDKLTLFCEVSVVQDS 142 (312)
T ss_dssp HHHHTCGGGCCCGGGCEEEEEEEEEEEEC
T ss_pred HHHhhccccCeecCCEEEEEEEEEEEecc
Confidence 9999877789999999999999999 653
No 20
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.74 E-value=4.2e-19 Score=140.75 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=78.0
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCceeEEeccC-CceeeEEcCC----ccCcc
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSYSVAQDAV-GKERRRFNGL----KLEWG 74 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~~~~~~~~-~~~~~~F~~~----~~~wG 74 (241)
+|++||||+.. +.++|||+||++++++.+ ..+|+++|+|+|+|+||.+++.+...... ....+.|... ..+||
T Consensus 79 ~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG 157 (192)
T 2gkw_A 79 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 157 (192)
T ss_dssp EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEE
T ss_pred EEEEEeCCCCC-CCCCEEEEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCC
Confidence 58999999863 468999999999876543 34799999999999999987554321100 0012456432 36899
Q ss_pred ccceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526 75 FDQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105 (241)
Q Consensus 75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v 105 (241)
|++||++++|++ +|||+||+++|+|+|.|
T Consensus 158 ~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 158 CPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp EEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred hHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence 999999999994 69999999999999987
No 21
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=154.66 Aligned_cols=102 Identities=20% Similarity=0.391 Sum_probs=81.7
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP 80 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~ 80 (241)
||++||+|+..++.++|||+||+|.+. ..+.+|.++|+|+|.|+|+.++..+..+. ..++|.....+|||.+||+
T Consensus 60 ~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~~~~~~~~~~~----~~~~F~~~~~~wG~~~Fi~ 134 (522)
T 2f1z_A 60 KIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR----ISHLFFHKENDWGFSNFMA 134 (522)
T ss_dssp EEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCTTCGGGCEEEE----CCEEECGGGCEEEESSSSB
T ss_pred EEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcCCCCccceecc----ceeEecCCCCCcchhheeE
Confidence 689999997632367999999999876 45678999999999999998876554443 4788987678899999999
Q ss_pred ccccccCCCCeeecCeEEEEEEEEE-ee
Q 036526 81 LEAFNDASNGYPVDDTCVFGAEVFV-KE 107 (241)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~ 107 (241)
+++|.++++|||+||+++|+|+|+| .+
T Consensus 135 ~~~L~~~~~g~L~nD~l~i~~~V~v~~p 162 (522)
T 2f1z_A 135 WSEVTDPEKGFIDDDKVTFEVFVQADAP 162 (522)
T ss_dssp HHHHSCGGGSSCBTTBEEEEEEEEECCC
T ss_pred hhHhcCcccCcccCCcEEEEEEeecccc
Confidence 9999877899999999999999999 54
No 22
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.72 E-value=1.9e-18 Score=140.49 Aligned_cols=102 Identities=18% Similarity=0.302 Sum_probs=78.2
Q ss_pred CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCceeEEec-cCCceeeEEcC----CccCcc
Q 036526 1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSYSVAQD-AVGKERRRFNG----LKLEWG 74 (241)
Q Consensus 1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~~~~~~-~~~~~~~~F~~----~~~~wG 74 (241)
+|++||||+.. +.++|+|+||.+++++.. ...|++.|+|+|+|+||.+++.+.... ......+.|.. ...+||
T Consensus 115 ~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG 193 (228)
T 1flk_A 115 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 193 (228)
T ss_dssp CEEEETTCCGG-GTTTEEEEEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCS
T ss_pred EEEEEcCCCCC-CCCCEEEEEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcC
Confidence 68999999873 568999999999876543 347999999999999999876443211 00001234542 246899
Q ss_pred ccceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526 75 FDQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105 (241)
Q Consensus 75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v 105 (241)
|++||++++|+ ++|||+||+++|+|+|.|
T Consensus 194 ~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v 222 (228)
T 1flk_A 194 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDT 222 (228)
T ss_dssp EEEEEEHHHHS--SSTTCCSSEEEEEEECCC
T ss_pred HHHeeEHHHHc--cCCCccCCEEEEEEEEEc
Confidence 99999999999 489999999999999988
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.96 E-value=2.3e-09 Score=97.34 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=84.1
Q ss_pred ccCcEEEEEEccccccC---CceEeeCcEE-ECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC--CceE-EEEEEE
Q 036526 122 TSGCKFVWMVENFSKLD---ERRQESQVFC-AGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE--AIKV-YARYTL 193 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~---~~~~~S~~f~-~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~--~~~~-~~~f~~ 193 (241)
..+..+.|+|.||+++. +..++||.|. ..||.++|.+||++ ..++|+|+++.+ +.+. +|++ .-+++|
T Consensus 403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~ 477 (592)
T 4gwm_A 403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM 477 (592)
T ss_dssp SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence 56778999999999986 4689999997 47999999999975 579999999998 4433 9999 478999
Q ss_pred EEEcCCCCc----ce--eeE----------------------------------------eeeeecc-CCCCCeEeCCEE
Q 036526 194 RILDQVGAK----HK--SFQ----------------------------------------GKVSSLN-EPETGFLVNDVC 226 (241)
Q Consensus 194 ~l~~~~~~~----~~--~f~----------------------------------------~~~~~~~-~~~~~yl~~d~l 226 (241)
.|+||+... +. +|. ..||+.+ .....||+||.|
T Consensus 478 ~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fiK~d~~ 557 (592)
T 4gwm_A 478 TLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFIKGDDV 557 (592)
T ss_dssp EECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSSBTTBE
T ss_pred EEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcccCCeE
Confidence 999997532 11 111 1356666 345679999999
Q ss_pred EEEEEEEE
Q 036526 227 LVEAEVAV 234 (241)
Q Consensus 227 ~i~~~V~v 234 (241)
.|.++|+=
T Consensus 558 ~i~~~~eD 565 (592)
T 4gwm_A 558 YILLTVED 565 (592)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99999854
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.22 E-value=1.2e-06 Score=79.76 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=60.3
Q ss_pred CCcEEEEEEEcCCC-CCCCCCEE-EEEEEEEEEcCCCCce---eE----EeccCC---c------------eeeEEcC--
Q 036526 15 KDHISLYLAVADTS-SLTFGWEV-NAVSRLFLLDQNQDSY---SV----AQDAVG---K------------ERRRFNG-- 68 (241)
Q Consensus 15 ~~~lS~~L~~~~~~-~~~~~w~~-~~~~~l~l~n~~~~~~---~~----~~~~~~---~------------~~~~F~~-- 68 (241)
..|+|+|++++.++ +....|++ .-++++.|+||+-... +. ..+... . ....|..
T Consensus 448 ~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~ 527 (592)
T 4gwm_A 448 VTNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGT 527 (592)
T ss_dssp SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCC
T ss_pred CceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCc
Confidence 46899999999865 34567999 4789999999963311 11 111000 0 0011221
Q ss_pred ---CccCccccceeeccccccCCCCeeecCeEEEEEEEE
Q 036526 69 ---LKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVF 104 (241)
Q Consensus 69 ---~~~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~ 104 (241)
...+|||+.||+++.|. +..||+||.+.|.++|.
T Consensus 528 ~~~r~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~e 564 (592)
T 4gwm_A 528 QFRRGGGYGTSAFITHERLK--SRDFIKGDDVYILLTVE 564 (592)
T ss_dssp EEEEEEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEE
T ss_pred ceeecCCcCccccccHHHHh--hcCcccCCeEEEEEEEE
Confidence 12578999999999998 67899999999999884
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=33.86 E-value=8.6 Score=27.42 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=20.2
Q ss_pred ccCcEEEEEEccccccC--CceEeeCcEEE
Q 036526 122 TSGCKFVWMVENFSKLD--ERRQESQVFCA 149 (241)
Q Consensus 122 ~~~~~~~~~I~nfs~~~--~~~~~S~~f~~ 149 (241)
+..|.+.|+|.+|+..+ +..+.|=.|.+
T Consensus 9 ~~~gd~vwkIs~F~~RKpeGty~nsvsFnI 38 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKPEGTYYNSLGFNI 38 (133)
T ss_dssp CCCCTTEEEEEEEEEEETTSSSCSEEEEEE
T ss_pred ccCCceEEEeeeeeeEcCCCCceeeEEEEE
Confidence 45688999999999987 34555555644
Done!