BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036528
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 17 HNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYI 76
++++ E C K +P++ C+ +L++D +S +L LG S+ + + + +T S I
Sbjct: 3 NHLISEICPKT--RNPSL----CLQALESDPRSASKDLKGLGQFSIDIAQASAKQT-SKI 55
Query: 77 XXXXXXXXXXPFMRACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTC 136
P ++ C + Y+DA+ +L QA + + Y NI S+ D TC
Sbjct: 56 IASLTNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTC 115
Query: 137 EDGFKENQGAVSPLTKRNYDAFQLSVISLSIINML 171
ED F+ + L + + L I L I N+L
Sbjct: 116 EDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLL 150
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
Length = 151
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 15/162 (9%)
Query: 13 GITGHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMI---SMKLTRENV 69
G G+N+V TCK N PN + C+ +L +D +S ++ L +I ++K
Sbjct: 1 GAMGNNLVETTCK----NTPN--YQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQA 54
Query: 70 TKTRSYIXXXXXXXXXXPFMRACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSV 129
T S + ++ C + + ++P +A+ K ED +G S
Sbjct: 55 AVTISKLRHSNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSG- 113
Query: 130 VDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIINML 171
DA CE+ FK G+ SP + N +LS + +I+ L
Sbjct: 114 -DA-QECEEYFK---GSKSPFSALNIAVHELSDVGRAIVRNL 150
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 31 DPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIXXXXXXXXXXPFMR 90
D ++ +FC+ L + K ANL L ++ T+ T+T + P +
Sbjct: 12 DKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVD-PRSK 68
Query: 91 ACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPL 150
C D Y A+ L++A + + N+ VS+ +D TC D K + S +
Sbjct: 69 LAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSV 128
Query: 151 TKRNYDAFQLSVISLSIINML 171
+ L I+L I NML
Sbjct: 129 VNNSKTIKNLCGIALVISNML 149
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 31 DPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIXXXXXXXXXXPFMR 90
D ++ +FC+ L + K ANL L ++ T+ T+T + P +
Sbjct: 13 DKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVD-PRSK 69
Query: 91 ACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPL 150
C D Y A+ L++A + + N+ VS+ +D TC D K + S +
Sbjct: 70 LAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSV 129
Query: 151 TKRNYDAFQLSVISLSIINML 171
+ L I+L I NML
Sbjct: 130 VNNSKTIKNLCGIALVISNML 150
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Query: 31 DPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIXXXXXXXXXXPFMR 90
D ++ +FC+ L + K NL L ++ T+ T+T + P +
Sbjct: 13 DKTLNPSFCLKFL--NTKFASPNLQALAKTTLDSTQARATQTLKKLQSIIDGGVD-PRSK 69
Query: 91 ACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPL 150
C D Y A+ L++A + + N+ VS+ +D TC D K + S +
Sbjct: 70 LAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSV 129
Query: 151 TKRNYDAFQLSVISLSIINML 171
+ L I+L I NML
Sbjct: 130 VNNSKTIKNLCGIALVISNML 150
>pdb|3BEX|A Chain A, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|B Chain B, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|C Chain C, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|D Chain D, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|E Chain E, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BEX|F Chain F, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate
pdb|3BF1|A Chain A, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|B Chain B, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|C Chain C, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|D Chain D, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|E Chain E, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF1|F Chain F, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Pantothenate And Adp
pdb|3BF3|A Chain A, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|B Chain B, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|C Chain C, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|D Chain D, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|E Chain E, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
pdb|3BF3|F Chain F, Type Iii Pantothenate Kinase From Thermotoga Maritima
Complexed With Product Phosphopantothenate
Length = 249
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 98 DLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPL 150
+L+S P L AM++ K IGV+SVV T + F + +SP+
Sbjct: 41 ELFSHLHPLLGDAMREIKG-------IGVASVVPTQNTVIERFSQKYFHISPI 86
>pdb|2GTD|A Chain A, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|B Chain B, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|C Chain C, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|D Chain D, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|E Chain E, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
pdb|2GTD|F Chain F, Crystal Structure Of A Type Iii Pantothenate Kinase:
Insight Into The Catalysis Of An Essential Coenzyme A
Biosynthetic Enzyme Universally Distributed In Bacteria
Length = 251
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 98 DLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPL 150
+L+S P L AM++ K IGV+SVV T + F + +SP+
Sbjct: 43 ELFSHLHPLLGDAMREIKG-------IGVASVVPTQNTVIERFSQKYFHISPI 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,136,486
Number of Sequences: 62578
Number of extensions: 130472
Number of successful extensions: 372
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 7
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)