Query 036528
Match_columns 172
No_of_seqs 125 out of 955
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01614 PME_inhib pectineste 100.0 2.3E-33 5E-38 207.8 15.4 150 16-172 28-178 (178)
2 smart00856 PMEI Plant invertas 100.0 1.3E-31 2.7E-36 192.7 12.9 145 16-167 3-148 (148)
3 PF04043 PMEI: Plant invertase 100.0 2.8E-30 6.1E-35 186.2 13.3 147 16-167 3-152 (152)
4 PLN02468 putative pectinestera 100.0 4.8E-28 1E-32 205.1 15.2 147 18-171 65-216 (565)
5 PLN02484 probable pectinestera 100.0 5.5E-28 1.2E-32 205.3 14.8 147 18-171 74-226 (587)
6 PLN02314 pectinesterase 100.0 1.8E-27 4E-32 202.4 15.1 147 18-171 71-233 (586)
7 PLN02708 Probable pectinestera 99.9 4.6E-27 9.9E-32 198.7 15.0 148 18-171 45-195 (553)
8 PLN02313 Pectinesterase/pectin 99.9 6.1E-27 1.3E-31 199.1 14.7 148 18-171 60-219 (587)
9 PLN02416 probable pectinestera 99.9 1.3E-26 2.8E-31 195.4 13.7 149 17-171 38-191 (541)
10 PLN02995 Probable pectinestera 99.9 2.7E-26 5.8E-31 193.4 14.6 146 18-171 35-190 (539)
11 PLN02217 probable pectinestera 99.9 4.4E-26 9.6E-31 194.9 14.6 146 18-171 54-207 (670)
12 PLN02506 putative pectinestera 99.9 5.8E-26 1.3E-30 191.1 14.7 148 17-171 34-191 (537)
13 PLN02301 pectinesterase/pectin 99.9 1E-25 2.2E-30 189.9 15.2 147 16-171 49-200 (548)
14 PLN02990 Probable pectinestera 99.9 1.2E-25 2.6E-30 190.6 15.4 146 18-171 54-209 (572)
15 PLN02713 Probable pectinestera 99.9 7.1E-26 1.5E-30 191.8 13.1 144 18-170 33-188 (566)
16 PLN02197 pectinesterase 99.9 2.3E-25 4.9E-30 188.9 13.3 144 18-171 39-190 (588)
17 PLN02745 Putative pectinestera 99.9 2.3E-25 5E-30 189.5 13.4 144 18-171 80-231 (596)
18 PLN02698 Probable pectinestera 99.9 6E-25 1.3E-29 183.9 12.9 147 15-171 20-176 (497)
19 PLN03043 Probable pectinestera 99.9 7.7E-24 1.7E-28 178.7 11.8 143 21-170 3-156 (538)
20 PLN02933 Probable pectinestera 99.9 2.3E-21 5E-26 162.5 14.0 120 52-171 49-181 (530)
21 PLN02201 probable pectinestera 99.9 1.3E-20 2.7E-25 158.1 14.8 116 54-170 37-162 (520)
22 PLN02488 probable pectinestera 99.8 2E-18 4.4E-23 143.5 10.6 143 22-171 3-159 (509)
23 PLN02170 probable pectinestera 99.6 9.2E-15 2E-19 122.7 9.4 122 35-171 59-184 (529)
24 PLN02916 pectinesterase family 99.5 5.6E-14 1.2E-18 117.6 10.9 84 85-171 57-140 (502)
25 PF07870 DUF1657: Protein of u 86.7 4.4 9.5E-05 23.4 6.8 45 63-108 3-47 (50)
26 KOG1733 Mitochondrial import i 77.9 17 0.00036 23.8 7.4 53 59-111 25-84 (97)
27 TIGR00208 fliS flagellar biosy 70.1 33 0.00072 23.7 7.5 36 98-133 26-61 (124)
28 PF08285 DPM3: Dolichol-phosph 60.4 6.9 0.00015 25.7 1.8 26 92-117 62-87 (91)
29 KOG4841 Dolichol-phosphate man 59.7 9.1 0.0002 24.8 2.2 26 92-117 66-91 (95)
30 PF02561 FliS: Flagellar prote 56.6 61 0.0013 22.1 7.6 24 52-75 16-39 (122)
31 PRK05685 fliS flagellar protei 56.6 65 0.0014 22.4 7.8 23 52-74 22-44 (132)
32 PF13956 Ibs_toxin: Toxin Ibs, 55.8 5.1 0.00011 18.0 0.4 11 2-12 7-17 (19)
33 COG1516 FliS Flagellin-specifi 53.1 36 0.00078 23.9 4.5 38 94-131 22-59 (132)
34 PF02203 TarH: Tar ligand bind 40.1 1.3E+02 0.0028 21.1 8.5 63 61-123 83-146 (171)
35 PF02953 zf-Tim10_DDP: Tim10/D 39.6 84 0.0018 18.7 4.8 28 85-112 37-64 (66)
36 PF14346 DUF4398: Domain of un 39.0 94 0.002 20.3 4.8 36 99-134 41-76 (103)
37 KOG4514 Uncharacterized conser 33.2 2.1E+02 0.0045 21.4 6.9 96 50-162 120-216 (222)
38 PF02609 Exonuc_VII_S: Exonucl 32.6 1E+02 0.0022 17.7 5.3 42 100-141 1-44 (53)
39 PRK09634 nusB transcription an 32.5 1.8E+02 0.0039 22.1 5.8 92 52-143 28-137 (207)
40 COG4383 Mu-like prophage prote 30.8 1E+02 0.0022 25.9 4.5 38 89-131 468-505 (517)
41 PF09680 Tiny_TM_bacill: Prote 30.8 49 0.0011 16.0 1.6 10 2-11 8-17 (24)
42 TIGR03504 FimV_Cterm FimV C-te 30.0 84 0.0018 17.5 2.8 25 107-131 3-27 (44)
43 PF11172 DUF2959: Protein of u 29.6 2.5E+02 0.0055 21.3 9.1 56 22-85 5-60 (201)
44 TIGR01280 xseB exodeoxyribonuc 28.6 1.4E+02 0.0031 18.1 4.9 43 100-142 3-47 (67)
45 cd00215 PTS_IIA_lac PTS_IIA, P 25.5 1.6E+02 0.0034 19.4 4.0 26 104-129 16-41 (97)
46 PRK09591 celC cellobiose phosp 25.3 1.6E+02 0.0034 19.7 4.0 28 103-130 20-47 (104)
47 PRK00977 exodeoxyribonuclease 23.4 2E+02 0.0044 18.2 4.9 44 99-142 11-56 (80)
48 TIGR00823 EIIA-LAC phosphotran 23.1 1.8E+02 0.004 19.2 4.0 27 104-130 18-44 (99)
49 TIGR01732 tiny_TM_bacill conse 22.6 83 0.0018 15.5 1.6 10 2-11 10-19 (26)
50 PF13677 MotB_plug: Membrane M 22.2 99 0.0021 18.2 2.3 13 2-14 27-39 (58)
51 PF08287 DASH_Spc19: Spc19; I 22.1 2.2E+02 0.0048 20.5 4.5 21 95-115 4-24 (153)
52 PF02255 PTS_IIA: PTS system, 20.6 2.6E+02 0.0056 18.3 4.8 29 104-132 15-43 (96)
53 PF03487 IL13: Interleukin-13; 20.3 66 0.0014 17.6 1.1 17 125-143 4-20 (43)
No 1
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=100.00 E-value=2.3e-33 Score=207.79 Aligned_cols=150 Identities=42% Similarity=0.637 Sum_probs=139.2
Q ss_pred cchhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 036528 16 GHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHD 95 (172)
Q Consensus 16 ~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~ 95 (172)
+.+.|+++|++| .| |++|+++|.++|+++.+|+.+++.++++.+..+++++.+++.++.++. +++..+.++++
T Consensus 28 ~~~~i~~~C~~t--~~----~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~~-~~~~~~~al~~ 100 (178)
T TIGR01614 28 TQSLIKRICKKT--EY----PNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLTK-GDPRDKSALED 100 (178)
T ss_pred hHHHHHHHHcCC--CC----hHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHH
Confidence 568999999999 34 499999999999988889999999999999999999999999998765 58899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHhHHHHhhcccCC-CcccccchhhhHHHHHhHHHHHHhhcC
Q 036528 96 CFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQG-AVSPLTKRNYDAFQLSVISLSIINMLK 172 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~~-~~~~l~~~~~~~~~l~sialai~~~l~ 172 (172)
|.++|+.+++.|+++.++++.++|+++++|+++|++++++|+|+|.+.++ .++||..+++++.+|++|+++|++++.
T Consensus 101 C~~~y~~a~~~L~~a~~~l~~~~~~d~~~~ls~a~~~~~tC~d~f~~~~~~~~~~l~~~~~~~~~l~s~alai~~~~~ 178 (178)
T TIGR01614 101 CVELYSDAVDALDKALASLKSKDYSDAETWLSSALTDPSTCEDGFEELGGIVKSPLTKRNNNVKKLSSITLAIIKMLT 178 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccchHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988753 458899999999999999999999874
No 2
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=99.98 E-value=1.3e-31 Score=192.72 Aligned_cols=145 Identities=39% Similarity=0.663 Sum_probs=134.0
Q ss_pred cchhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 036528 16 GHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHD 95 (172)
Q Consensus 16 ~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~ 95 (172)
..+.|+.+|++| .|| ++|+++|.++|+++..|+.+|++++++.++.+++.+..+++++.+. +.+|..+.+|++
T Consensus 3 ~~~~i~~~C~~T--~~~----~~C~~~L~~~~~~~~~d~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-~~~~~~~~al~~ 75 (148)
T smart00856 3 TSKLIDSICKST--DYP----DFCVSSLSSDPSSSATDPKDLAKIAIKVALSQATKTLSFISSLLKK-TKDPRLKAALKD 75 (148)
T ss_pred HHHHHHHHhcCC--CCh----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHH
Confidence 457899999998 444 9999999999998888999999999999999999999999998775 478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHhHHHHhhcccC-CCcccccchhhhHHHHHhHHHHH
Q 036528 96 CFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQ-GAVSPLTKRNYDAFQLSVISLSI 167 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~-~~~~~l~~~~~~~~~l~sialai 167 (172)
|.++|+.++++|++++.+++.++|.++++|+|+|+++++||+|+|.+.+ ..++||..++.++.+|++|+|+|
T Consensus 76 C~~~y~~a~~~L~~a~~~l~~~~~~d~~~~lsaa~t~~~tC~d~f~~~~~~~~~~l~~~~~~~~~l~s~aLai 148 (148)
T smart00856 76 CLELYDDAVDSLEKALEELKSGDYDDVATWLSAALTDQDTCLDGFEENDDKVKSPLTKRNDNLEKLTSNALAI 148 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhcCcchHHhHhccCCcchhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998753 34578999999999999999986
No 3
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=99.97 E-value=2.8e-30 Score=186.18 Aligned_cols=147 Identities=34% Similarity=0.587 Sum_probs=128.9
Q ss_pred cchhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 036528 16 GHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHD 95 (172)
Q Consensus 16 ~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~ 95 (172)
..+.|+++|++| .|| +.+|..+|.++|.++..|+.+|++++++.++.++..+..++.++.+..+++|..+.+|++
T Consensus 3 ~~~~I~~~C~~T--~~~---~~~C~~~L~~~~~~~~~d~~~l~~~av~~a~~~~~~a~~~~~~l~~~~~~~~~~~~~l~~ 77 (152)
T PF04043_consen 3 TSSLIQDICKST--PYP---YNLCLSTLSSDPSSSAADPKELARIAVQAALSNATSASAFISKLLKNPSKDPNAKQALQD 77 (152)
T ss_dssp -HHHHHHHHCTS--S-----HHHHHHHHHTCCCGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-S-THHHHHHHHH
T ss_pred hHHHHHHHhhCC--CCC---cHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHhhHHHHH
Confidence 357899999999 454 349999999998877789999999999999999999999999998875589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhcchhHHHhHHHhhhhhHhHHHHhhc-ccCCCcccccchhhhHHHHHhHHHHH
Q 036528 96 CFDLYSDAVPTLKQAMKDY--KAKQYEDANIGVSSVVDACTTCEDGFK-ENQGAVSPLTKRNYDAFQLSVISLSI 167 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l--~~~~~~~~~~~lsaa~~~~~tC~d~f~-~~~~~~~~l~~~~~~~~~l~sialai 167 (172)
|.++|+.++++|+++++++ ..++|+++++|+++|++++++|+++|. ..++.++||...+.++.+|++|+|+|
T Consensus 78 C~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~lsaa~~~~~tC~~~f~~~~~~~~~~l~~~~~~~~~l~s~aLai 152 (152)
T PF04043_consen 78 CQELYDDAVDSLQRALEALNSKNGDYDDARTWLSAALTNQDTCEDGFEEAGSPVKSPLVQRNDNVEKLSSNALAI 152 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHT-HHHHHHHHHHHHHHHHHHHHHC-TTSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999 999999999999999999999999995 33355689999999999999999997
No 4
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=99.96 E-value=4.8e-28 Score=205.08 Aligned_cols=147 Identities=20% Similarity=0.215 Sum_probs=131.7
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKK-KLDPFMRACLHDC 96 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~-~~~~~~k~~l~~C 96 (172)
..|+..|..| .|| ++|+++|.+.|.+...+|.+|+++++++++.++.++...+.++.... ..++..+.||+||
T Consensus 65 ~~Ik~~C~~T--~Yp----~lC~sSLs~~~~s~~~~p~~L~~~al~vti~~~~~a~~~~s~l~~~~~~~d~~~k~AL~DC 138 (565)
T PLN02468 65 TSVKAVCDVT--LYK----DSCYETLAPAPKASQLQPEELFKYAVKVAINELSKASQAFSNSEGFLGVKDNMTNAALNAC 138 (565)
T ss_pred HHHHHhccCC--CCh----HHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHH
Confidence 4799999999 676 99999999999877789999999999999999999999888776432 3688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh----hcchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHHHhhc
Q 036528 97 FDLYSDAVPTLKQAMKDYK----AKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIINML 171 (172)
Q Consensus 97 ~~~y~~a~~~L~~a~~~l~----~~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai~~~l 171 (172)
.|+|++++++|++++.+++ .+.++|+++|||+|+++++||.|||.+. +..++|...+.++.+|++|+|||++.+
T Consensus 139 ~ELlddaid~L~~Sl~~l~~~~~~~~~dDl~TWLSAAlTnq~TClDGF~e~-~vk~~~~~~l~n~~eLtSNaLAIi~~l 216 (565)
T PLN02468 139 QELLDLAIDNLNNSLTSSGGVSVLDNVDDLRTWLSSAGTYQETCIDGLAEP-NLKSFGENHLKNSTELTSNSLAIITWI 216 (565)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcchhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999987 3557899999999999999999999864 455789999999999999999999874
No 5
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=99.96 E-value=5.5e-28 Score=205.28 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=130.0
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDCF 97 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C~ 97 (172)
..|+.+|+.| .|| ++|+++|.+.|.+...++.+|+++++++++.++.++......+.. .+.+++.+.||+||.
T Consensus 74 ~~Iks~C~~T--~YP----~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~-~~~~~r~k~AL~DCl 146 (587)
T PLN02484 74 QAISKTCSKT--RFP----NLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISY-VQMPPRVRSAYDSCL 146 (587)
T ss_pred HHHHHhccCC--CCh----HHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHH
Confidence 4799999999 677 999999999998777899999999999999999988776655543 357889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh----cchhHHHhHHHhhhhhHhHHHHhhcccC--CCcccccchhhhHHHHHhHHHHHHhhc
Q 036528 98 DLYSDAVPTLKQAMKDYKA----KQYEDANIGVSSVVDACTTCEDGFKENQ--GAVSPLTKRNYDAFQLSVISLSIINML 171 (172)
Q Consensus 98 ~~y~~a~~~L~~a~~~l~~----~~~~~~~~~lsaa~~~~~tC~d~f~~~~--~~~~~l~~~~~~~~~l~sialai~~~l 171 (172)
|+|++++++|++++.++.. +.++|+++|||+|+++++||+|||.+.+ ..+++|...+.++.+|++|+|||++.+
T Consensus 147 ELlddAid~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTnq~TClDGF~e~~~~~vk~~m~~~l~~l~~LtSNALAIi~~~ 226 (587)
T PLN02484 147 ELLDDSVDALSRALSSVVPSSGGGSPQDVVTWLSAALTNHDTCTEGFDGVNGGEVKDQMTGALKDLSELVSNCLAIFSAS 226 (587)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchHHHHhHHHHHhccHhhHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999985 3578999999999999999999998652 345789999999999999999999875
No 6
>PLN02314 pectinesterase
Probab=99.95 E-value=1.8e-27 Score=202.42 Aligned_cols=147 Identities=18% Similarity=0.339 Sum_probs=128.9
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDCF 97 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C~ 97 (172)
..|+.+|+.| .|| ++|+++|.+.|.+...||.+|+++++++++++++.+...++++.+. ..+++.+.+|+||.
T Consensus 71 ~~Iks~C~~T--~YP----~lC~sSLs~~p~s~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~-~~~~~~k~AL~DC~ 143 (586)
T PLN02314 71 TSLKAVCSVT--RYP----ESCISSISSLPTSNTTDPETLFKLSLKVAIDELSKLSDLPQKLINE-TNDERLKSALRVCE 143 (586)
T ss_pred HHHHHhccCC--CCh----HHHHHHHhcccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 4899999999 677 9999999999988778999999999999999999999999998765 47899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh---------cchhHHHhHHHhhhhhHhHHHHhhcccCC-------CcccccchhhhHHHHH
Q 036528 98 DLYSDAVPTLKQAMKDYKA---------KQYEDANIGVSSVVDACTTCEDGFKENQG-------AVSPLTKRNYDAFQLS 161 (172)
Q Consensus 98 ~~y~~a~~~L~~a~~~l~~---------~~~~~~~~~lsaa~~~~~tC~d~f~~~~~-------~~~~l~~~~~~~~~l~ 161 (172)
++|++++++|++++.+|+. +.++|+++|||+|+++++||+|||.+.+. ....|.....++.+|+
T Consensus 144 EllddAid~L~~Sl~~l~~~~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLt 223 (586)
T PLN02314 144 TLFDDAIDRLNDSISSMQVGEGEKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFT 223 (586)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999998852 35689999999999999999999976521 1123556668999999
Q ss_pred hHHHHHHhhc
Q 036528 162 VISLSIINML 171 (172)
Q Consensus 162 sialai~~~l 171 (172)
||+|||++.+
T Consensus 224 SNaLAIi~~l 233 (586)
T PLN02314 224 SNSLAIVSKI 233 (586)
T ss_pred HHHHHHHhhh
Confidence 9999999875
No 7
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=99.95 E-value=4.6e-27 Score=198.69 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=125.2
Q ss_pred hhHHHHHhhhhhcCCCcccccchhcccccccc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKS-QCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDC 96 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s-~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C 96 (172)
..|+..|+.| .|| ++|+++|.++|+. ...++.++++.++++++.++..+...++.+.+..+.+...+.+++||
T Consensus 45 ~~I~s~C~~T--~YP----~lC~sSLs~~~~~~~~~~p~~Li~aAL~vsl~~a~~a~~~v~~L~~~~~~~~~~~~AL~DC 118 (553)
T PLN02708 45 PQILLACNAT--RFP----DTCVSSLSNAGRVPPDPKPIQIIQSAISVSRENLKTAQSMVKSILDSSAGNVNRTTAATNC 118 (553)
T ss_pred HHHHHhccCC--CCc----HHHHHHHhhccCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 5799999999 666 9999999998853 34689999999999999999999999998876532233345899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHhHHHHhhcccC--CCcccccchhhhHHHHHhHHHHHHhhc
Q 036528 97 FDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQ--GAVSPLTKRNYDAFQLSVISLSIINML 171 (172)
Q Consensus 97 ~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~--~~~~~l~~~~~~~~~l~sialai~~~l 171 (172)
.|+|++++++|++++.++....+.|+++|||+|++|++||.|||.+.+ +.....+...+++.+|++|+|||++.+
T Consensus 119 ~ELlddavd~L~~Sl~~L~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~v~~~~~~L~nvs~LtSNSLAmv~~~ 195 (553)
T PLN02708 119 LEVLSNSEHRISSTDIALPRGKIKDARAWMSAALLYQYDCWSALKYVNDTSQVNDTMSFLDSLIGLTSNALSMMASY 195 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhccHhHHHHHhhccCccchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999888899999999999999999999997652 222222267789999999999999863
No 8
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=99.95 E-value=6.1e-27 Score=199.13 Aligned_cols=148 Identities=23% Similarity=0.388 Sum_probs=129.9
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKK-KLDPFMRACLHDC 96 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~-~~~~~~k~~l~~C 96 (172)
..|+.+|+.| .|| ++|+++|.+.|.+...++.+|+++++++++.++..+...++++.+.. +.+++.+.||+||
T Consensus 60 ~~Iks~C~~T--~YP----~~C~ssLs~~~~~~~~~~~~Li~~sL~vtl~~a~~a~~~vs~L~~~~~~l~~r~k~AL~DC 133 (587)
T PLN02313 60 AVLKSVCSST--LYP----ELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDC 133 (587)
T ss_pred HHHHHhccCC--CCh----HHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 4799999999 666 99999999988766679999999999999999999999999987643 4788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------cchhHHHhHHHhhhhhHhHHHHhhcccC---CCcccccchhhhHHHHHhHHH
Q 036528 97 FDLYSDAVPTLKQAMKDYKA--------KQYEDANIGVSSVVDACTTCEDGFKENQ---GAVSPLTKRNYDAFQLSVISL 165 (172)
Q Consensus 97 ~~~y~~a~~~L~~a~~~l~~--------~~~~~~~~~lsaa~~~~~tC~d~f~~~~---~~~~~l~~~~~~~~~l~sial 165 (172)
.|+|++++++|++++.+++. ..++|+++|||+|++|++||.|||.+.+ ...++|.....++.+|++|+|
T Consensus 134 lELlddavD~L~~Sl~~l~~~~~~~~~~~~~dDlqTWLSAALTnq~TClDGF~~~~~~~~vk~~m~~~l~n~teLtSNAL 213 (587)
T PLN02313 134 LETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNAL 213 (587)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHhcchhhHHHhhhccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999873 2358999999999999999999997431 234568888899999999999
Q ss_pred HHHhhc
Q 036528 166 SIINML 171 (172)
Q Consensus 166 ai~~~l 171 (172)
||++.+
T Consensus 214 AIv~~~ 219 (587)
T PLN02313 214 AMIKNM 219 (587)
T ss_pred HHHhcc
Confidence 999864
No 9
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=1.3e-26 Score=195.38 Aligned_cols=149 Identities=18% Similarity=0.278 Sum_probs=127.3
Q ss_pred chhHHHHHhhhhhcCCCcccccchhccccccccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 036528 17 HNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQ-CANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHD 95 (172)
Q Consensus 17 ~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~-~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~ 95 (172)
.+.|+.+|+.| .|| ++|+++|.++|... +.++.++++++++.++..+..+...++.+......+++.+.+++|
T Consensus 38 ~~~Iks~C~~T--~YP----~lC~~sLss~~~~~~s~~~~~ll~~sL~~A~~~~~~~s~l~s~~~~~~~~~~~~k~AL~D 111 (541)
T PLN02416 38 LSSLTSFCKST--PYP----DACFDSLKLSISINISPNILNFLLQTLQTAISEAGKLTNLLSGAGQSSNIIEKQRGTIQD 111 (541)
T ss_pred HHHHHHhcCCC--CCh----HHHHHHHhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHH
Confidence 46899999999 666 99999999987543 357888999999999999888888777664333357889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---cchhHHHhHHHhhhhhHhHHHHhhcccCC-CcccccchhhhHHHHHhHHHHHHhhc
Q 036528 96 CFDLYSDAVPTLKQAMKDYKA---KQYEDANIGVSSVVDACTTCEDGFKENQG-AVSPLTKRNYDAFQLSVISLSIINML 171 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~---~~~~~~~~~lsaa~~~~~tC~d~f~~~~~-~~~~l~~~~~~~~~l~sialai~~~l 171 (172)
|.|+|++++++|++++.+|+. +.+.|+++|||+|+++++||+|||.+.++ .+++|..+..++.++++|+|||++.+
T Consensus 112 C~El~~dAvD~L~~Sl~~L~~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~~~~~~~i~~~~~~v~qltSNALAlv~~~ 191 (541)
T PLN02416 112 CKELHQITVSSLKRSVSRIQAGDSRKLADARAYLSAALTNKNTCLEGLDSASGPLKPKLVNSFTSTYKHVSNSLSMLPKS 191 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHhcchhhHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999985 34689999999999999999999987643 34679999999999999999999864
No 10
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=2.7e-26 Score=193.36 Aligned_cols=146 Identities=20% Similarity=0.307 Sum_probs=124.2
Q ss_pred hhHHHHHhhhhhcCCCcccccchhcccccccccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQC-ANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDC 96 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~-~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C 96 (172)
..|+..|..| .|| ++|+++|.+.|.+.. .++.++++++++.++.++.++...++++.+. ..+++.+.+++||
T Consensus 35 ~~Irs~C~~T--~YP----~lC~sSLs~~~~s~s~~~~~~l~~~~~~aAl~~a~sa~~~i~~l~~~-~~~~r~~~AL~DC 107 (539)
T PLN02995 35 TDIDGWCDKT--PYP----DPCKCYFKNHNGFRQPTQISEFRVMLVEAAMDRAISARDELTNSGKN-CTDFKKQAVLADC 107 (539)
T ss_pred HHHHhhcCCC--CCh----HHHHHHHhhccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHH
Confidence 4799999999 666 999999999887644 4899999999999999999999999988654 3688899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-------chhHHHhHHHhhhhhHhHHHHhhcccC--CCcccccchhhhHHHHHhHHHHH
Q 036528 97 FDLYSDAVPTLKQAMKDYKAK-------QYEDANIGVSSVVDACTTCEDGFKENQ--GAVSPLTKRNYDAFQLSVISLSI 167 (172)
Q Consensus 97 ~~~y~~a~~~L~~a~~~l~~~-------~~~~~~~~lsaa~~~~~tC~d~f~~~~--~~~~~l~~~~~~~~~l~sialai 167 (172)
.|+|++++++|++++++++.. .+.|+++|||+|+++++||+|||.+.+ +...+... +.++.+|++|+|+|
T Consensus 108 ~ELl~DAvD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~~~~~v~~~v~-~~~~~~ltSNaLAi 186 (539)
T PLN02995 108 IDLYGDTIMQLNRTLQGVSPKAGAAKRCTDFDAQTWLSTALTNTETCRRGSSDLNVSDFITPIVS-NTKISHLISNCLAV 186 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhcchhhhhhhhccccchhhhhhhhh-hhhHHHHHHHHHHH
Confidence 999999999999999998742 457999999999999999999998652 12233222 36799999999999
Q ss_pred Hhhc
Q 036528 168 INML 171 (172)
Q Consensus 168 ~~~l 171 (172)
++.+
T Consensus 187 ~~~l 190 (539)
T PLN02995 187 NGAL 190 (539)
T ss_pred hhhh
Confidence 9875
No 11
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=4.4e-26 Score=194.90 Aligned_cols=146 Identities=21% Similarity=0.349 Sum_probs=126.8
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDCF 97 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C~ 97 (172)
+.|+..|+.| .|| ++|+++|.+.+ ....++.+|++.++++++.++..+...++++.+. ..+++.+.|++||.
T Consensus 54 ~~Ikt~C~sT--~YP----~lC~sSLs~~~-~~~~~p~dLi~aaL~vTl~a~~~a~~~~s~L~~~-~~~~r~k~AL~DCl 125 (670)
T PLN02217 54 KAIKDVCAPT--DYK----ETCEDTLRKDA-KNTSDPLELVKTAFNATMKQISDVAKKSQTMIEL-QKDPRTKMALDQCK 125 (670)
T ss_pred HHHHHHhcCC--CCc----HHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHH
Confidence 3799999999 677 99999999988 4456999999999999999999999999888543 36789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-------cchhHHHhHHHhhhhhHhHHHHhhcccCC-CcccccchhhhHHHHHhHHHHHHh
Q 036528 98 DLYSDAVPTLKQAMKDYKA-------KQYEDANIGVSSVVDACTTCEDGFKENQG-AVSPLTKRNYDAFQLSVISLSIIN 169 (172)
Q Consensus 98 ~~y~~a~~~L~~a~~~l~~-------~~~~~~~~~lsaa~~~~~tC~d~f~~~~~-~~~~l~~~~~~~~~l~sialai~~ 169 (172)
|+|++++++|++++.+++. ...+|+++|||+|++|++||.|||.+.++ ....|.....++.+|++|+|||++
T Consensus 126 ELlddAvDeL~~Sl~~L~~~~~~~~~~~~dDvqTWLSAALTnQdTClDGF~~~~~~vk~~m~~~l~nvseLtSNALAmv~ 205 (670)
T PLN02217 126 ELMDYAIGELSKSFEELGKFEFHKVDEALIKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVS 205 (670)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhchhHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999972 22579999999999999999999976533 234577888999999999999998
Q ss_pred hc
Q 036528 170 ML 171 (172)
Q Consensus 170 ~l 171 (172)
.+
T Consensus 206 ~l 207 (670)
T PLN02217 206 EM 207 (670)
T ss_pred hc
Confidence 64
No 12
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=5.8e-26 Score=191.10 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=127.5
Q ss_pred chhHHHHHhhhhhcCCCcccccchhcccccccc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 036528 17 HNIVHETCKKCAQNDPNISHNFCVTSLQADAKS-QCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHD 95 (172)
Q Consensus 17 ~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s-~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~ 95 (172)
...|+..|+.| .|| +.|+++|.+.... ...||.+|+++++++++.++..+...+.++.+. ..+++.+.+++|
T Consensus 34 ~~~I~s~C~~T--~YP----~~C~ssLs~~~~~~~~~~p~~L~~aAL~vtl~~a~~a~~~v~~l~~~-~~~~r~~~Al~D 106 (537)
T PLN02506 34 QALIAQACQFV--ENH----SSCVSNIQAELKKSGPRTPHSVLSAALKATLDEARLAIDMITKFNAL-SISYREQVAIED 106 (537)
T ss_pred HHHHHHHccCC--CCc----HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChHHHHHHHH
Confidence 35899999999 677 9999999986433 346899999999999999999999999988554 368899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cc----hhHHHhHHHhhhhhHhHHHHhhcccCC-CcccccchhhhHHHHHhHHHH
Q 036528 96 CFDLYSDAVPTLKQAMKDYKA----KQ----YEDANIGVSSVVDACTTCEDGFKENQG-AVSPLTKRNYDAFQLSVISLS 166 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~----~~----~~~~~~~lsaa~~~~~tC~d~f~~~~~-~~~~l~~~~~~~~~l~siala 166 (172)
|.|+|++++++|++++.+++. .. .+|+++|||+|+++++||.|||.+.++ ....|.....++.+|+||+||
T Consensus 107 C~EllddSvd~L~~Sl~el~~~~~~~~~~~~~~Dv~TWLSAALT~q~TC~DGF~~~~~~~k~~v~~~l~nv~~LtSNALA 186 (537)
T PLN02506 107 CKELLDFSVSELAWSLLEMNKIRAGHDNVAYEGNLKAWLSAALSNQDTCLEGFEGTDRHLENFIKGSLKQVTQLISNVLA 186 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHhHHHHHhccHhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 11 479999999999999999999987533 335588888999999999999
Q ss_pred HHhhc
Q 036528 167 IINML 171 (172)
Q Consensus 167 i~~~l 171 (172)
|++.+
T Consensus 187 iv~~l 191 (537)
T PLN02506 187 MYTQL 191 (537)
T ss_pred HHhhc
Confidence 99865
No 13
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=1e-25 Score=189.89 Aligned_cols=147 Identities=20% Similarity=0.282 Sum_probs=129.9
Q ss_pred cchhHHHHHhhhhhcCCCcccccchhcccccccc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 036528 16 GHNIVHETCKKCAQNDPNISHNFCVTSLQADAKS--QCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACL 93 (172)
Q Consensus 16 ~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s--~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l 93 (172)
+.+.|+..|+.| .|| +.|+++|.+.+.+ ...+|.+|++.++++++.++..+...++++... +.+++.+.++
T Consensus 49 ~~~~Iks~C~~T--~YP----~~C~ssLs~~a~~~~~~~~p~~L~~aaL~vsl~~a~~a~~~vs~l~~~-~~~~~~~aAL 121 (548)
T PLN02301 49 PPSLLQTLCDRA--HDQ----DSCQAMVSEIATNTVMKLNRVDLLQVLLKESTPHLQNTIEMASEIRIR-INDPRDKAAL 121 (548)
T ss_pred chHHHHHHhcCC--CCh----HHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCChHHHHHH
Confidence 347899999999 666 9999999998754 235899999999999999999999999988544 4789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---cchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHHHhh
Q 036528 94 HDCFDLYSDAVPTLKQAMKDYKA---KQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIINM 170 (172)
Q Consensus 94 ~~C~~~y~~a~~~L~~a~~~l~~---~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai~~~ 170 (172)
+||.|+|++++++|++++++++. +++.|+++|||+|+++++||.|||.+. ..++|...++++.+|++|+|||++.
T Consensus 122 ~DC~ELl~davd~L~~Sl~~l~~~~~~~~~Dv~TWLSAALT~q~TC~DGF~~~--~~~~~~~~l~n~~qL~SNsLAiv~~ 199 (548)
T PLN02301 122 ADCVELMDLSKDRIKDSVEALGNVTSKSHADAHTWLSSVLTNHVTCLDGINGP--SRQSMKPGLKDLISRARTSLAILVS 199 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhcchhhHHhhhhhh--hhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999988874 357899999999999999999999865 2477999999999999999999987
Q ss_pred c
Q 036528 171 L 171 (172)
Q Consensus 171 l 171 (172)
+
T Consensus 200 l 200 (548)
T PLN02301 200 V 200 (548)
T ss_pred c
Confidence 5
No 14
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=1.2e-25 Score=190.57 Aligned_cols=146 Identities=22% Similarity=0.298 Sum_probs=125.4
Q ss_pred hhHHHHHhhhhhcCCCcccccchhcccc-ccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQA-DAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKK-KLDPFMRACLHD 95 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s-~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~-~~~~~~k~~l~~ 95 (172)
..|++.|+.| .|| ++|+++|.+ .|. ..+|.+|++.++++++..+.++...+.++.... +.+++.+.|++|
T Consensus 54 ~~Ik~~C~~T--~YP----~lC~ssLs~a~~~--~~~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~r~k~Al~D 125 (572)
T PLN02990 54 KAVEAVCAPT--DYK----ETCVNSLMKASPD--STQPLDLIKLGFNVTIRSINDSIKKASGELKAKAANDPETKGALEL 125 (572)
T ss_pred HHHHHhhcCC--CCc----HHHHHHhhhcccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence 4699999999 677 999999998 443 468999999999999999999999988776432 478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-------chhHHHhHHHhhhhhHhHHHHhhcccCC-CcccccchhhhHHHHHhHHHHH
Q 036528 96 CFDLYSDAVPTLKQAMKDYKAK-------QYEDANIGVSSVVDACTTCEDGFKENQG-AVSPLTKRNYDAFQLSVISLSI 167 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~~-------~~~~~~~~lsaa~~~~~tC~d~f~~~~~-~~~~l~~~~~~~~~l~sialai 167 (172)
|.|+|++++++|++++++++.. .++|+++|||+|+++++||.|||.+.+. ....|.....++.+|++|+|||
T Consensus 126 C~ELlddAvdeL~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~e~~s~lk~~~~~~l~nv~~LtSNALAi 205 (572)
T PLN02990 126 CEKLMNDATDDLKKCLDNFDGFSIDQIEDFVEDLRVWLSGSIAYQQTCMDTFEEIKSNLSQDMLKIFKTSRELTSNGLAM 205 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHhccHhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999831 2689999999999999999999986532 2345777788999999999999
Q ss_pred Hhhc
Q 036528 168 INML 171 (172)
Q Consensus 168 ~~~l 171 (172)
++.+
T Consensus 206 v~~~ 209 (572)
T PLN02990 206 ITNI 209 (572)
T ss_pred Hhhh
Confidence 9874
No 15
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=7.1e-26 Score=191.78 Aligned_cols=144 Identities=22% Similarity=0.297 Sum_probs=124.3
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKK--LDPFMRACLHD 95 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~--~~~~~k~~l~~ 95 (172)
..+...|+.| .|| ++|+++|.+. ...|+.+++++++++++.++..+...++++.+..+ .+++.+.|++|
T Consensus 33 ~~~~s~C~~T--~YP----~~C~ssLs~s---~~~d~~~l~~aaL~~tl~~a~~a~~~vs~L~~~~~~~~~~r~k~AL~D 103 (566)
T PLN02713 33 VSPSTICNTT--PDP----SFCKSVLPHN---QPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALED 103 (566)
T ss_pred CCCccccCCC--CCh----HHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 5789999999 566 9999999762 24689999999999999999999999999876543 38899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------cchhHHHhHHHhhhhhHhHHHHhhcccC--C-CcccccchhhhHHHHHhHHH
Q 036528 96 CFDLYSDAVPTLKQAMKDYKA-------KQYEDANIGVSSVVDACTTCEDGFKENQ--G-AVSPLTKRNYDAFQLSVISL 165 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~-------~~~~~~~~~lsaa~~~~~tC~d~f~~~~--~-~~~~l~~~~~~~~~l~sial 165 (172)
|.|+|++++++|++++.+++. +.++|+++|||+|++|++||.|||.+.+ + .+..|.....++.+|++|+|
T Consensus 104 C~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~~k~~v~~~l~nvt~LtSNaL 183 (566)
T PLN02713 104 CQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTKLYSVSL 183 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999973 3478999999999999999999998652 1 22347778889999999999
Q ss_pred HHHhh
Q 036528 166 SIINM 170 (172)
Q Consensus 166 ai~~~ 170 (172)
||++.
T Consensus 184 Alv~~ 188 (566)
T PLN02713 184 ALFTK 188 (566)
T ss_pred HHhcc
Confidence 99975
No 16
>PLN02197 pectinesterase
Probab=99.93 E-value=2.3e-25 Score=188.86 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=125.2
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLL--KKKKLDPFMRACLHD 95 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~--~~~~~~~~~k~~l~~ 95 (172)
+.|+.+|..| .|| +.|.++|.+.+ +.+|.+|++.++++++.++.++...+..+. .....+++.+.|++|
T Consensus 39 k~I~s~C~~T--~YP----~lC~ssLs~~~---s~~p~~L~~aaL~vtl~~~~~a~~~~s~l~~~~~~~~~~r~k~Al~D 109 (588)
T PLN02197 39 KAVQGICQST--SDK----ASCVKTLEPVK---SDDPNKLIKAFMLATKDAITKSSNFTGQTEGNMGSSISPNNKAVLDY 109 (588)
T ss_pred HHHHHhcCCC--CCh----HHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHH
Confidence 3799999999 666 99999999987 358999999999999999999999998664 122358899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------cchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHHHh
Q 036528 96 CFDLYSDAVPTLKQAMKDYKA------KQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIIN 169 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~------~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai~~ 169 (172)
|.++|++++++|++++.+++. ..+.|+++|||+|++|++||.|||.+. .....|.....++.+|++|+|||++
T Consensus 110 C~eLl~davd~L~~Sl~~l~~~~~~~~~~~~DvqTWLSAALTnq~TClDGf~~~-~~k~~v~~~l~nv~~LtSNaLAiv~ 188 (588)
T PLN02197 110 CKRVFMYALEDLSTIVEEMGEDLNQIGSKIDQLKQWLTGVYNYQTDCLDDIEED-DLRKTIGEGIANSKILTSNAIDIFH 188 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHhChhhhhccccCc-chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999972 236899999999999999999999864 3345677888999999999999998
Q ss_pred hc
Q 036528 170 ML 171 (172)
Q Consensus 170 ~l 171 (172)
.+
T Consensus 189 ~l 190 (588)
T PLN02197 189 SV 190 (588)
T ss_pred cc
Confidence 74
No 17
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=2.3e-25 Score=189.45 Aligned_cols=144 Identities=23% Similarity=0.305 Sum_probs=127.4
Q ss_pred hhHHHHHhhhhhcCCCcccccchhccccccc--cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 036528 18 NIVHETCKKCAQNDPNISHNFCVTSLQADAK--SQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHD 95 (172)
Q Consensus 18 ~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~--s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~ 95 (172)
+.|+.+|+.| .|| +.|+++|.+... +...+|.+|++++++.++..+..+...+.++. ..+++.+.|++|
T Consensus 80 ~~Ik~~C~~T--~YP----~~C~sSLs~~~~~~~~~~~p~~Ll~aAL~vtl~~~~~a~~~~~~l~---~~~~r~k~Al~D 150 (596)
T PLN02745 80 KIIQTVCNAT--LYK----QTCENTLKKGTEKDPSLAQPKDLLKSAIKAVNDDLDKVLKKVLSFK---FENPDEKDAIED 150 (596)
T ss_pred HHHHHhcCCC--CCh----HHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCHHHHHHHHH
Confidence 5699999999 677 999999998653 23468999999999999999999988888773 367899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------cchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHHHh
Q 036528 96 CFDLYSDAVPTLKQAMKDYKA------KQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIIN 169 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~------~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai~~ 169 (172)
|.|+|++++++|++++++++. +.+.|+++|||+|+++++||.|||.+. ..+++|...+.++.+|++|+|||++
T Consensus 151 C~ELlddAid~L~~Sl~~l~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~-~l~s~m~~~l~~~~eLtSNALAiv~ 229 (596)
T PLN02745 151 CKLLVEDAKEELKASISRINDEVNKLAKNVPDLNNWLSAVMSYQETCIDGFPEG-KLKSEMEKTFKSSQELTSNSLAMVS 229 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHhccHhHHHhhhccc-chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999873 457899999999999999999999874 4567899999999999999999998
Q ss_pred hc
Q 036528 170 ML 171 (172)
Q Consensus 170 ~l 171 (172)
.+
T Consensus 230 ~l 231 (596)
T PLN02745 230 SL 231 (596)
T ss_pred hh
Confidence 75
No 18
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=99.92 E-value=6e-25 Score=183.86 Aligned_cols=147 Identities=18% Similarity=0.246 Sum_probs=128.0
Q ss_pred ccchhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHH
Q 036528 15 TGHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKL--DPFMRAC 92 (172)
Q Consensus 15 ~~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~--~~~~k~~ 92 (172)
..+..|+..|+.| .|| +.|+++|.+.+. ++.+|++.++++++..+..+...+.++.+..+. +++.+.+
T Consensus 20 ~~~~~I~~~C~~T--~YP----~~C~ssLs~~~~----~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~~r~~~A 89 (497)
T PLN02698 20 AYQNEVQRECSFT--KYP----SLCVQTLRGLRH----DGVDIVSVLVNKTISETNLPLSSSMGSSYQLSLEEATYTPSV 89 (497)
T ss_pred hHHHHHHHhccCC--CCh----HHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcChHHHHH
Confidence 3457899999999 666 999999999774 799999999999999999999999988654332 4788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHhHHHhhhhhHhHHHHhhccc-----CCCcccccchhhhHHHHHhHH
Q 036528 93 LHDCFDLYSDAVPTLKQAMKDYKA---KQYEDANIGVSSVVDACTTCEDGFKEN-----QGAVSPLTKRNYDAFQLSVIS 164 (172)
Q Consensus 93 l~~C~~~y~~a~~~L~~a~~~l~~---~~~~~~~~~lsaa~~~~~tC~d~f~~~-----~~~~~~l~~~~~~~~~l~sia 164 (172)
++||.|+|++++++|++++.+|.. +.+.|+++|||+|+++++||.|||.+. ...+++|..++.++.+|++|+
T Consensus 90 l~DC~Ell~dsvd~L~~Sl~~l~~~~~~~~~Dv~TWLSAALT~q~TClDGF~~~~~~~~~~v~~~i~~~l~~~~~ltSNA 169 (497)
T PLN02698 90 SDSCERLMKMSLKRLRQSLLALKGSSRKNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQISQKMDHLSRLVSNS 169 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhcchhhHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 567899999999999999999999532 123467889999999999999
Q ss_pred HHHHhhc
Q 036528 165 LSIINML 171 (172)
Q Consensus 165 lai~~~l 171 (172)
|||++.+
T Consensus 170 LAmv~~l 176 (497)
T PLN02698 170 LALVNRI 176 (497)
T ss_pred HHHHhhh
Confidence 9999875
No 19
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=99.91 E-value=7.7e-24 Score=178.69 Aligned_cols=143 Identities=22% Similarity=0.262 Sum_probs=122.7
Q ss_pred HHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHH
Q 036528 21 HETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKK----KKLDPFMRACLHDC 96 (172)
Q Consensus 21 ~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~----~~~~~~~k~~l~~C 96 (172)
...|+.| .|| ++|+++|.+.+.+. .++.++++.++++++.++..+...+.++... .+.+++.+.|++||
T Consensus 3 ~~~C~~T--~YP----~lC~ssLs~~~~~~-~~p~~l~~aaL~vtl~~a~~a~~~vs~l~~~~~~~~~~~~r~~~AL~DC 75 (538)
T PLN03043 3 SLACKST--LYP----KLCRSILSTVKSSP-SDPYEYGKFSVKQCLKQARRLSKVINYYLTHENQPGKMTHEEIGALADC 75 (538)
T ss_pred CcccCCC--CCc----HHHHHHHhhccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCHHHHHHHHHH
Confidence 4689998 566 99999999877543 5899999999999999999999999988632 13678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------chhHHHhHHHhhhhhHhHHHHhhcccCC-CcccccchhhhHHHHHhHHHHHHh
Q 036528 97 FDLYSDAVPTLKQAMKDYKAK------QYEDANIGVSSVVDACTTCEDGFKENQG-AVSPLTKRNYDAFQLSVISLSIIN 169 (172)
Q Consensus 97 ~~~y~~a~~~L~~a~~~l~~~------~~~~~~~~lsaa~~~~~tC~d~f~~~~~-~~~~l~~~~~~~~~l~sialai~~ 169 (172)
.|++++++++|++++.+++.. ...|+++|||+|++|++||.|||.+.++ ....|.....++.+|++|+|||++
T Consensus 76 ~ELlddSvD~L~~Sl~~L~~~~~~~~~~~~DvqTWLSAALTnqdTClDGF~~~~~~~k~~i~~~l~nvt~LtSNaLAlv~ 155 (538)
T PLN03043 76 GELSELNVDYLETISSELKSAELMTDALVERVTSLLSGVVTNQQTCYDGLVDSKSSFAAALGAPLGNLTRLYSVSLGLVS 155 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccchhhHHHhHHHhhcChhhhhchhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998743 2579999999999999999999986533 234577888999999999999998
Q ss_pred h
Q 036528 170 M 170 (172)
Q Consensus 170 ~ 170 (172)
.
T Consensus 156 ~ 156 (538)
T PLN03043 156 H 156 (538)
T ss_pred h
Confidence 4
No 20
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=99.87 E-value=2.3e-21 Score=162.54 Aligned_cols=120 Identities=23% Similarity=0.356 Sum_probs=105.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHhHHH
Q 036528 52 ANLGELGMISMKLTRENVTKTRSYIKDLLKKK--KLDPFMRACLHDCFDLYSDAVPTLKQAMKDYKA--KQYEDANIGVS 127 (172)
Q Consensus 52 ~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~--~~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l~~--~~~~~~~~~ls 127 (172)
.|+.+|++.++++++.++..+...++++.+.. +.+++.+.+++||.|+|++++++|++++.+++. +.+.|+++|||
T Consensus 49 ~~~~~L~~aaL~vtl~~a~~a~~~vs~L~~~~~~~l~~r~~~Al~DC~El~~davd~L~~S~~~l~~~~~~~~Dv~TWLS 128 (530)
T PLN02933 49 KTIPELIIADLNLTILKVNLASSNFSDLQTRLGPNLTHRERCAFEDCLGLLDDTISDLTTAISKLRSSSPEFNDVSMLLS 128 (530)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 58999999999999999999999999886532 368899999999999999999999999999986 56899999999
Q ss_pred hhhhhHhHHHHhhcccC---------CCcccccchhhhHHHHHhHHHHHHhhc
Q 036528 128 SVVDACTTCEDGFKENQ---------GAVSPLTKRNYDAFQLSVISLSIINML 171 (172)
Q Consensus 128 aa~~~~~tC~d~f~~~~---------~~~~~l~~~~~~~~~l~sialai~~~l 171 (172)
+|+++++||+|||.+.+ ..+..|.....++.+|++|+|||++.+
T Consensus 129 AALT~q~TC~DGF~~~~~~~~~~~~~~vk~~v~~~l~~v~~LtSNALAlv~~l 181 (530)
T PLN02933 129 NAMTNQDTCLDGFSTSDNENNNDMTYELPENLKESILDISNHLSNSLAMLQNI 181 (530)
T ss_pred HHhcchhhHhhhhhccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998543 122346777889999999999999864
No 21
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=99.86 E-value=1.3e-20 Score=158.15 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------chhHHHh
Q 036528 54 LGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDCFDLYSDAVPTLKQAMKDYKAK---------QYEDANI 124 (172)
Q Consensus 54 ~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l~~~---------~~~~~~~ 124 (172)
+..+++.++++++.++.++...++++.+. ..+++.+.|++||.|++++++++|++++.+|+.. ...|+++
T Consensus 37 ~~~~~~~~L~~tl~~a~~a~~~vs~l~~~-~~~~r~~~Al~DC~ELl~davD~L~~Sl~eL~~~~~~~~~~~~~~~DvqT 115 (520)
T PLN02201 37 PPSEFVSSLKTTVDVIRKVVSIVSQFDKV-FGDSRLSNAISDCLDLLDFAAEELSWSISASQNPNGKDNSTGDVGSDLRT 115 (520)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHH
Confidence 46788899999999999999999988654 3578999999999999999999999999998732 2589999
Q ss_pred HHHhhhhhHhHHHHhhcccCCCc-ccccchhhhHHHHHhHHHHHHhh
Q 036528 125 GVSSVVDACTTCEDGFKENQGAV-SPLTKRNYDAFQLSVISLSIINM 170 (172)
Q Consensus 125 ~lsaa~~~~~tC~d~f~~~~~~~-~~l~~~~~~~~~l~sialai~~~ 170 (172)
|||+|+++++||.|||.+.++.. ..+.....++.++++|+|||++.
T Consensus 116 WLSAALTnq~TClDGF~~~~~~~k~~v~~~l~nvt~LtSNaLALv~~ 162 (520)
T PLN02201 116 WLSAALSNQDTCIEGFDGTNGIVKKLVAGSLSQVGSTVRELLTMVHP 162 (520)
T ss_pred HHHhhhcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998754333 34777788999999999999975
No 22
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=99.77 E-value=2e-18 Score=143.51 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=119.3
Q ss_pred HHHhhhhhcCCCcccccchhcccccc----ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q 036528 22 ETCKKCAQNDPNISHNFCVTSLQADA----KSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDC- 96 (172)
Q Consensus 22 ~~C~~t~~~~p~v~~~~C~~~L~s~p----~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C- 96 (172)
..|..+ | +++.|...+.... .....++.++...+++.++.++..+...+.++.+....+++.+.+++||
T Consensus 3 ~~c~~~----~--~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~a~~dc~ 76 (509)
T PLN02488 3 GVCKGY----D--DKQSCQNLLLELKTVSSSLSEMRCRDLLIIVLKNSVWRIDMAMIGVMEDTKLLEEMENDMLGVKEDT 76 (509)
T ss_pred eecCCC----C--ChHHHHHHHHhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHhH
Confidence 368887 3 4599999887765 3223468999999999999999999999999887652289999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHHhh------cchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHH
Q 036528 97 ---FDLYSDAVPTLKQAMKDYKA------KQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSI 167 (172)
Q Consensus 97 ---~~~y~~a~~~L~~a~~~l~~------~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai 167 (172)
.++|+.++++|++++..+.. ..++|+++|||+|++||+||.|||... .....|.....++.+|++|+|+|
T Consensus 77 ~~c~el~~~~~~~l~~s~~~~~~~~~~~~~~~~d~~twLSa~lt~q~TC~dg~~~~-~~~~~~~~~l~~~~~~~sn~La~ 155 (509)
T PLN02488 77 NLFEEMMESAKDRMIRSVEELLGGESPNLGSYENVHTWLSGVLTSYITCIDEIGEG-AYKRRVEPELEDLISRARVALAI 155 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCcHHHHHHHHHHhHhchhhHhccccCc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999952 236899999999999999999999532 33355778888999999999999
Q ss_pred Hhhc
Q 036528 168 INML 171 (172)
Q Consensus 168 ~~~l 171 (172)
+..+
T Consensus 156 ~~~~ 159 (509)
T PLN02488 156 FISI 159 (509)
T ss_pred hccc
Confidence 9764
No 23
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=99.58 E-value=9.2e-15 Score=122.75 Aligned_cols=122 Identities=18% Similarity=0.126 Sum_probs=89.7
Q ss_pred ccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036528 35 SHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDCFDLYSDAVPTLKQAMKDY 114 (172)
Q Consensus 35 ~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l 114 (172)
++..|...|++-..+ -|..+...+++..+..+..+. . ...-.+++||.+++++++++|+++++..
T Consensus 59 ~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~Al~DC~ELlddavd~L~~S~~~~ 123 (529)
T PLN02170 59 SSSSKQGFLSSVQES---MNHALFARSLAFNLTLSHRTV-----------Q-THTFDPVNDCLELLDDTLDMLSRIVVIK 123 (529)
T ss_pred Ccchhhhhhhhhhcc---ChHHHHHhhhHhhhhhhhhhc-----------c-cchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 559999999876433 256677777766554211111 1 1125789999999999999999999654
Q ss_pred hh-cchhHHHhHHHhhhhhHhHHHHhhcccC--CCc-ccccchhhhHHHHHhHHHHHHhhc
Q 036528 115 KA-KQYEDANIGVSSVVDACTTCEDGFKENQ--GAV-SPLTKRNYDAFQLSVISLSIINML 171 (172)
Q Consensus 115 ~~-~~~~~~~~~lsaa~~~~~tC~d~f~~~~--~~~-~~l~~~~~~~~~l~sialai~~~l 171 (172)
.. +..+|+++|||+|++|++||.|||.+.+ ... ..+.....++.+|++|+|||++.+
T Consensus 124 ~~~~~~~DvqTWLSAALTnq~TClDGf~~~~~~~~~~~~~~~~l~nv~eLtSNALALv~~~ 184 (529)
T PLN02170 124 HADHDEEDVHTWLSAALTNQETCEQSLQEKSSSYKHGLAMDFVARNLTGLLTNSLDLFVSV 184 (529)
T ss_pred ccccchhHHHHHHHHHHhchhhHhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 43 4578999999999999999999998653 111 235556789999999999999864
No 24
>PLN02916 pectinesterase family protein
Probab=99.54 E-value=5.6e-14 Score=117.55 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHH
Q 036528 85 LDPFMRACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVIS 164 (172)
Q Consensus 85 ~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sia 164 (172)
.+-..-.|++||.|+|++++++|++++..+......|+++|||+|++|++||.|||.+.+... .....++.+|+||+
T Consensus 57 ~~~~~~~Al~DC~ELl~dSvd~L~~Sl~~~~~~~~~DvqTWLSAALTnq~TClDGf~~~~~~~---~~~v~nvt~ltSNa 133 (502)
T PLN02916 57 SYYNLGEALSDCEKLYDESEARLSKLLVSHENFTVEDARTWLSGVLANHHTCLDGLEQKGQGH---KPMAHNVTFVLSEA 133 (502)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHhCHhHHHHhhhhccccc---hHHHHHHHHHHHHH
Confidence 455678999999999999999999999988776789999999999999999999998652211 33457999999999
Q ss_pred HHHHhhc
Q 036528 165 LSIINML 171 (172)
Q Consensus 165 lai~~~l 171 (172)
|||++.+
T Consensus 134 LAlv~~~ 140 (502)
T PLN02916 134 LALYKKS 140 (502)
T ss_pred HHHhhhh
Confidence 9999864
No 25
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=86.73 E-value=4.4 Score=23.43 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036528 63 KLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDCFDLYSDAVPTLK 108 (172)
Q Consensus 63 ~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C~~~y~~a~~~L~ 108 (172)
+.++....++.+....+.-.+ .|+..|..+..|.+..+..+..|+
T Consensus 3 kq~lAslK~~qA~Le~fal~T-~d~~AK~~y~~~a~~l~~ii~~L~ 47 (50)
T PF07870_consen 3 KQTLASLKKAQADLETFALQT-QDQEAKQMYEQAAQQLEEIIQDLE 47 (50)
T ss_pred HHHHHHHHHHHhhHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666777777777776554 689999999999999999888775
No 26
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.91 E-value=17 Score=23.82 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036528 59 MISMKLTRENVTKTRSYIKDL-----LKKKK--LDPFMRACLHDCFDLYSDAVPTLKQAM 111 (172)
Q Consensus 59 ~~ai~~a~~~a~~~~~~i~~l-----~~~~~--~~~~~k~~l~~C~~~y~~a~~~L~~a~ 111 (172)
.+..++|+.+|.+....+.+- ...++ .++..+.++..|.+-|.++-.-+.+++
T Consensus 25 qVkqqlAvAnAqeLv~kisekCf~KCit~PGssl~~~e~~Cis~CmdRyMdawniVSrty 84 (97)
T KOG1733|consen 25 QVKQQLAVANAQELVSKISEKCFDKCITKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTY 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888777642 22232 578899999999999999877666655
No 27
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=70.09 E-value=33 Score=23.67 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhH
Q 036528 98 DLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDAC 133 (172)
Q Consensus 98 ~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~ 133 (172)
-+|+.++..|+.|..++.++++......++.|..=.
T Consensus 26 mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii 61 (124)
T TIGR00208 26 MLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNII 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345555555555555555555554444444444433
No 28
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=60.41 E-value=6.9 Score=25.69 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036528 92 CLHDCFDLYSDAVPTLKQAMKDYKAK 117 (172)
Q Consensus 92 ~l~~C~~~y~~a~~~L~~a~~~l~~~ 117 (172)
.++||.+.|.+-..++++|.++++++
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 36899999999999999999999875
No 29
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.72 E-value=9.1 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036528 92 CLHDCFDLYSDAVPTLKQAMKDYKAK 117 (172)
Q Consensus 92 ~l~~C~~~y~~a~~~L~~a~~~l~~~ 117 (172)
-++||.|.|-+-+.++++|.++++++
T Consensus 66 TfnDc~eA~veL~~~IkEAr~~L~rk 91 (95)
T KOG4841|consen 66 TFNDCEEAAVELQSQIKEARADLARK 91 (95)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 36899999999999999999999875
No 30
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=56.57 E-value=61 Score=22.07 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 036528 52 ANLGELGMISMKLTRENVTKTRSY 75 (172)
Q Consensus 52 ~d~~~l~~~ai~~a~~~a~~~~~~ 75 (172)
++|.+|..+..+-++.....+...
T Consensus 16 asp~~Li~~Lyd~ai~~l~~a~~a 39 (122)
T PF02561_consen 16 ASPHQLILMLYDGAIEFLKQAKEA 39 (122)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655553
No 31
>PRK05685 fliS flagellar protein FliS; Validated
Probab=56.55 E-value=65 Score=22.42 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=11.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 036528 52 ANLGELGMISMKLTRENVTKTRS 74 (172)
Q Consensus 52 ~d~~~l~~~ai~~a~~~a~~~~~ 74 (172)
++|.+|..+..+-++.....+..
T Consensus 22 asp~~Li~mLydgai~~l~~A~~ 44 (132)
T PRK05685 22 ASPHKLIQMLYEGALSFLAQAKL 44 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444433
No 32
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=55.79 E-value=5.1 Score=18.01 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=6.4
Q ss_pred hHHHHHHHHhh
Q 036528 2 FFFFLFVCSFH 12 (172)
Q Consensus 2 ~~~~~~~~~~~ 12 (172)
.|++|++++|.
T Consensus 7 IlvvLLliSf~ 17 (19)
T PF13956_consen 7 ILVVLLLISFP 17 (19)
T ss_pred HHHHHHhcccc
Confidence 35666666664
No 33
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=53.08 E-value=36 Score=23.95 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhh
Q 036528 94 HDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVD 131 (172)
Q Consensus 94 ~~C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~ 131 (172)
+-=.-+|+.++..|..|..++..+++......+..|..
T Consensus 22 ~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~ 59 (132)
T COG1516 22 KLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAID 59 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33446777777777777777777776665555554443
No 34
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=40.13 E-value=1.3e+02 Score=21.10 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcchhHHH
Q 036528 61 SMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHDCFDLYSD-AVPTLKQAMKDYKAKQYEDAN 123 (172)
Q Consensus 61 ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~C~~~y~~-a~~~L~~a~~~l~~~~~~~~~ 123 (172)
.+..+......+...+..+...+..++..+...+.-.+.|+. ....+...+.+++.+|+.+..
T Consensus 83 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~~~~ 146 (171)
T PF02203_consen 83 LLARAEQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDPLLAALRAGDIAAFM 146 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHHHHH
Confidence 333334445555555555554443344677889999999998 668889999999988766543
No 35
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=39.56 E-value=84 Score=18.74 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036528 85 LDPFMRACLHDCFDLYSDAVPTLKQAMK 112 (172)
Q Consensus 85 ~~~~~k~~l~~C~~~y~~a~~~L~~a~~ 112 (172)
.+..+..+++.|.+-|-++...+.+...
T Consensus 37 L~~~E~~Ci~~C~~ky~~~~~~v~~~~~ 64 (66)
T PF02953_consen 37 LSSKEESCIDNCVDKYIDTNQFVSKRFQ 64 (66)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999888776653
No 36
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=39.00 E-value=94 Score=20.33 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHh
Q 036528 99 LYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACT 134 (172)
Q Consensus 99 ~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~ 134 (172)
.|..+.+.|..+...+..++|..++.....|..+.+
T Consensus 41 el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~A~ 76 (103)
T PF14346_consen 41 ELKEAREKLQRAKAALDDGDYERARRLAEQAQADAE 76 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 788899999999999999999998888777766543
No 37
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.21 E-value=2.1e+02 Score=21.45 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=51.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHh
Q 036528 50 QCANLGELGMISMKLTRENVTKTRSYIKDLLKKKK-LDPFMRACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSS 128 (172)
Q Consensus 50 ~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~-~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsa 128 (172)
+..||.-|.-+-. .+......+..++++-+ .-...-.--.+|.+.|..+++.|.+++++=-.+.|.- |
T Consensus 120 p~vDp~VL~DlE~-----~~~el~~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~~DanIK~~Y~l----L-- 188 (222)
T KOG4514|consen 120 PEVDPSVLSDLEL-----EAQELASSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDTLDANIKCQYQL----L-- 188 (222)
T ss_pred CCCChHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH----H--
Confidence 3457665544332 34455555555555432 1223344567899999999999988886533333321 1
Q ss_pred hhhhHhHHHHhhcccCCCcccccchhhhHHHHHh
Q 036528 129 VVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSV 162 (172)
Q Consensus 129 a~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~s 162 (172)
-.|++--... +.+..+..+.++++++.-
T Consensus 189 -----Ak~EEi~ksm-~pv~~La~qir~irRlve 216 (222)
T KOG4514|consen 189 -----AKAEEITKSM-KPVEQLAQQIRQIRRLVE 216 (222)
T ss_pred -----HHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 1233332222 223345566666666654
No 38
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=32.61 E-value=1e+02 Score=17.67 Aligned_cols=42 Identities=7% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhcc--hhHHHhHHHhhhhhHhHHHHhhc
Q 036528 100 YSDAVPTLKQAMKDYKAKQ--YEDANIGVSSVVDACTTCEDGFK 141 (172)
Q Consensus 100 y~~a~~~L~~a~~~l~~~~--~~~~~~~lsaa~~~~~tC~d~f~ 141 (172)
|+.++.+|++.+..|.+++ .+++-.....++.-...|.+-+.
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~ 44 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLE 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555542 34444444555555555555443
No 39
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=32.48 E-value=1.8e+02 Score=22.14 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Q 036528 52 ANLGELGMISMKLTRENVTKTRSYIKDLLKK--------K---KLDPFMRACLHDCFDLYSDAVPTLKQAMK------DY 114 (172)
Q Consensus 52 ~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~--------~---~~~~~~k~~l~~C~~~y~~a~~~L~~a~~------~l 114 (172)
.+..+|...+++.-.....++......-+++ . +.-+..+.-++++.+.-+.++..+..+.. ..
T Consensus 28 ~~~~~l~~~a~~~l~~~~~~~l~~~~~el~~~~~~l~~s~~~~~~~~~~r~~l~~~~~~~~~~~ng~s~~~~lp~ll~~~ 107 (207)
T PRK09634 28 LQLEELLLAAVRTLTQEVRETLDTAAAELERAQQRLLDSEGDASDLESARTMLQEALTLAETAINRLSAALELPELLQLA 107 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhC
Confidence 4677888888877777777766555432221 1 12344566677777777777654433322 12
Q ss_pred h-hcchhHHHhHHHhhhhhHhHHHHhhccc
Q 036528 115 K-AKQYEDANIGVSSVVDACTTCEDGFKEN 143 (172)
Q Consensus 115 ~-~~~~~~~~~~lsaa~~~~~tC~d~f~~~ 143 (172)
+ ..+-..+...+..++.+...++..+...
T Consensus 108 ~q~~~r~~a~~Lv~gvlr~~~~LD~iI~~~ 137 (207)
T PRK09634 108 DQEEVREYALERIGAVIRNRKEIDQLLDTV 137 (207)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 2334566777778888888888777764
No 40
>COG4383 Mu-like prophage protein gp29 [Function unknown]
Probab=30.85 E-value=1e+02 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhh
Q 036528 89 MRACLHDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVD 131 (172)
Q Consensus 89 ~k~~l~~C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~ 131 (172)
.-.+++.| .|+.+...|......++.. .+++.|+.|+-
T Consensus 468 vv~Al~~~--~yeea~~~L~~lY~~ldda---~l~T~l~~aiF 505 (517)
T COG4383 468 VVAALNAG--SYEEAQAALNALYPELDDA---ELRTLLQRAIF 505 (517)
T ss_pred HHHHHHhc--CHHHHHHHHHHhhhccChH---HHHHHHHHHHH
Confidence 34678888 8888888888887776654 67777777764
No 41
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=30.80 E-value=49 Score=16.00 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=6.5
Q ss_pred hHHHHHHHHh
Q 036528 2 FFFFLFVCSF 11 (172)
Q Consensus 2 ~~~~~~~~~~ 11 (172)
+.++||.|+.
T Consensus 8 livVLFILLi 17 (24)
T PF09680_consen 8 LIVVLFILLI 17 (24)
T ss_pred hHHHHHHHHH
Confidence 4567777764
No 42
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.95 E-value=84 Score=17.47 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcchhHHHhHHHhhhh
Q 036528 107 LKQAMKDYKAKQYEDANIGVSSVVD 131 (172)
Q Consensus 107 L~~a~~~l~~~~~~~~~~~lsaa~~ 131 (172)
|.-|...+..|+++.++.+|..++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4556677788899999999988875
No 43
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.56 E-value=2.5e+02 Score=21.27 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=40.1
Q ss_pred HHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036528 22 ETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKL 85 (172)
Q Consensus 22 ~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~ 85 (172)
.-|..+ ||..|.+ ++-+.+-.-.|..+=++-+.+-+.++-..++..++.+..-.+.
T Consensus 5 ~gCqsa-------YY~amEk-vG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~gg 60 (201)
T PF11172_consen 5 TGCQSA-------YYSAMEK-VGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGG 60 (201)
T ss_pred HHhHHH-------HHHHHHH-hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 457765 6677766 4444443345777888889999999999999999988766543
No 44
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=28.56 E-value=1.4e+02 Score=18.15 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhcc--hhHHHhHHHhhhhhHhHHHHhhcc
Q 036528 100 YSDAVPTLKQAMKDYKAKQ--YEDANIGVSSVVDACTTCEDGFKE 142 (172)
Q Consensus 100 y~~a~~~L~~a~~~l~~~~--~~~~~~~lsaa~~~~~tC~d~f~~ 142 (172)
|+.++.+|+..+..|.+++ .+++-..-..++.....|...+..
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ 47 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQ 47 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666665543 345555555555566666655544
No 45
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=25.53 E-value=1.6e+02 Score=19.44 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhcchhHHHhHHHhh
Q 036528 104 VPTLKQAMKDYKAKQYEDANIGVSSV 129 (172)
Q Consensus 104 ~~~L~~a~~~l~~~~~~~~~~~lsaa 129 (172)
....-+|++..+.++++.++..+..|
T Consensus 16 rs~~~eAl~~a~~g~fe~A~~~l~ea 41 (97)
T cd00215 16 RSKALEALKAAKEGDFAEAEELLEEA 41 (97)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555556555555444443
No 46
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=25.27 E-value=1.6e+02 Score=19.72 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhcchhHHHhHHHhhh
Q 036528 103 AVPTLKQAMKDYKAKQYEDANIGVSSVV 130 (172)
Q Consensus 103 a~~~L~~a~~~l~~~~~~~~~~~lsaa~ 130 (172)
|....-+|++..+.++++.++..+..|-
T Consensus 20 Ars~~~eAl~~ak~gdf~~A~~~l~eA~ 47 (104)
T PRK09591 20 ARTEVHEAFAAMREGNFDLAEQKLNQSN 47 (104)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344455555556666555555444443
No 47
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.41 E-value=2e+02 Score=18.15 Aligned_cols=44 Identities=11% Similarity=0.311 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc--hhHHHhHHHhhhhhHhHHHHhhcc
Q 036528 99 LYSDAVPTLKQAMKDYKAKQ--YEDANIGVSSVVDACTTCEDGFKE 142 (172)
Q Consensus 99 ~y~~a~~~L~~a~~~l~~~~--~~~~~~~lsaa~~~~~tC~d~f~~ 142 (172)
.|+.++.+|+..+..|.+++ .++.-..-..++.....|..-+..
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ 56 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQ 56 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666653 355555555666666666666554
No 48
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=23.10 E-value=1.8e+02 Score=19.19 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhcchhHHHhHHHhhh
Q 036528 104 VPTLKQAMKDYKAKQYEDANIGVSSVV 130 (172)
Q Consensus 104 ~~~L~~a~~~l~~~~~~~~~~~lsaa~ 130 (172)
....-+|++..+.++++.++..+..|-
T Consensus 18 rs~~~eAl~~a~~gdfe~A~~~l~eA~ 44 (99)
T TIGR00823 18 RSKALEALKAAKAGDFAKARALVEQAG 44 (99)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445555555555555554444433
No 49
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.61 E-value=83 Score=15.53 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=6.2
Q ss_pred hHHHHHHHHh
Q 036528 2 FFFFLFVCSF 11 (172)
Q Consensus 2 ~~~~~~~~~~ 11 (172)
+.++||.++.
T Consensus 10 livVLFILLI 19 (26)
T TIGR01732 10 LIVVLFILLV 19 (26)
T ss_pred HHHHHHHHHH
Confidence 4566776664
No 50
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=22.22 E-value=99 Score=18.22 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=8.6
Q ss_pred hHHHHHHHHhhhc
Q 036528 2 FFFFLFVCSFHGI 14 (172)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (172)
+|++||+++++.+
T Consensus 27 LLl~fFVlL~s~s 39 (58)
T PF13677_consen 27 LLLAFFVLLFSMS 39 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776654
No 51
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=22.14 E-value=2.2e+02 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 036528 95 DCFDLYSDAVPTLKQAMKDYK 115 (172)
Q Consensus 95 ~C~~~y~~a~~~L~~a~~~l~ 115 (172)
+|..-...++..|+.+++-|+
T Consensus 4 ~cV~SL~~S~~lL~~Si~~L~ 24 (153)
T PF08287_consen 4 NCVSSLRSSVQLLQSSIETLD 24 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 52
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=20.63 E-value=2.6e+02 Score=18.31 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhcchhHHHhHHHhhhhh
Q 036528 104 VPTLKQAMKDYKAKQYEDANIGVSSVVDA 132 (172)
Q Consensus 104 ~~~L~~a~~~l~~~~~~~~~~~lsaa~~~ 132 (172)
....-+|++..+.++++.++..+..|-..
T Consensus 15 rs~~~eAl~~a~~~~fe~A~~~l~~a~~~ 43 (96)
T PF02255_consen 15 RSLAMEALKAAREGDFEEAEELLKEADEE 43 (96)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444555555555555554444444333
No 53
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=20.32 E-value=66 Score=17.63 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHhhhhhHhHHHHhhccc
Q 036528 125 GVSSVVDACTTCEDGFKEN 143 (172)
Q Consensus 125 ~lsaa~~~~~tC~d~f~~~ 143 (172)
|+..++ .-+|..|+...
T Consensus 4 wlt~vi--altClggLasP 20 (43)
T PF03487_consen 4 WLTVVI--ALTCLGGLASP 20 (43)
T ss_dssp -------------------
T ss_pred HHHHHH--HHHHhcccCCC
Confidence 454444 36899999765
Done!