Query 036528
Match_columns 172
No_of_seqs 125 out of 955
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 3.4E-35 1.2E-39 211.3 15.8 150 16-172 2-151 (153)
2 2cj4_A Invertase inhibitor; pr 100.0 1.1E-34 3.7E-39 208.3 15.3 147 15-171 2-149 (150)
3 1x91_A Invertase/pectin methyl 100.0 7.2E-35 2.5E-39 209.8 13.2 150 14-172 2-151 (153)
4 3iqc_A FLIS, flagellar protein 74.7 5.3 0.00018 27.0 4.7 27 51-77 22-48 (131)
5 1vh6_A Flagellar protein FLIS; 74.0 5.4 0.00019 27.5 4.7 27 51-77 19-45 (145)
6 1orj_A Flagellar protein FLIS; 62.6 9.3 0.00032 25.8 3.9 26 51-76 15-40 (130)
7 4f7g_B Talin-1; alpha-helix bu 46.7 57 0.002 23.9 6.2 45 88-132 160-206 (216)
8 3dxr_B Mitochondrial import in 27.0 97 0.0033 19.5 4.1 63 52-116 16-87 (95)
9 4fm3_A Uncharacterized hypothe 26.7 1.3E+02 0.0043 19.2 4.8 36 100-135 31-66 (98)
10 3cjh_B Mitochondrial import in 24.9 1E+02 0.0035 17.5 4.5 29 85-113 34-62 (64)
11 1wgn_A UBAP1, ubiquitin associ 24.4 1E+02 0.0035 17.9 3.5 32 95-126 21-54 (63)
12 3dxr_A Mitochondrial import in 21.9 1.5E+02 0.005 18.2 4.7 32 85-116 50-81 (89)
13 1vp7_A Exodeoxyribonuclease VI 21.2 1.7E+02 0.0057 18.6 5.4 42 100-141 32-75 (100)
14 2e2a_A Protein (enzyme IIA); h 21.0 1.5E+02 0.0053 18.9 4.3 24 106-129 23-46 (105)
15 2bsk_B Mitochondrial import in 20.6 1.6E+02 0.0054 18.1 5.3 33 85-117 43-75 (90)
16 1wcr_A PTS system, N, N'-diace 20.5 1.6E+02 0.0055 18.7 4.3 28 104-131 19-46 (103)
17 2cp9_A EF-TS, EF-TSMT, elongat 20.3 92 0.0032 18.1 2.8 23 93-115 24-46 (64)
18 3k1s_A PTS system, cellobiose- 20.2 1.6E+02 0.0056 18.9 4.3 25 105-129 24-48 (109)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=3.4e-35 Score=211.34 Aligned_cols=150 Identities=27% Similarity=0.472 Sum_probs=138.9
Q ss_pred cchhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 036528 16 GHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLHD 95 (172)
Q Consensus 16 ~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~~ 95 (172)
+++.|+.+|++| .| |++|+++|.++|+++.+|+.+|+++++++++.+++.+..+++++.+.. .+|+.+.+|++
T Consensus 2 ~~~~i~~~C~~T--~~----~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~d 74 (153)
T 1xg2_B 2 ENHLISEICPKT--RN----PSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQA-TDPKLKGRYET 74 (153)
T ss_dssp CCHHHHHHGGGS--SC----HHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHH
T ss_pred hHhHHHHHhcCC--CC----hHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 457899999998 44 499999999999988889999999999999999999999999998764 68999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHHHhhcC
Q 036528 96 CFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIINMLK 172 (172)
Q Consensus 96 C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai~~~l~ 172 (172)
|.++|++++++|++++++++.++|.++++|||+|+++++||+|||.+.+..++||..++.++.+|++|+|+|+++|+
T Consensus 75 C~e~y~~a~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 75 CSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcccchHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999987643457899999999999999999999874
No 2
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=1.1e-34 Score=208.31 Aligned_cols=147 Identities=21% Similarity=0.349 Sum_probs=134.9
Q ss_pred ccchhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 036528 15 TGHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACLH 94 (172)
Q Consensus 15 ~~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l~ 94 (172)
++++.|+++|++| .| |++|+++|.++|+++.+|+.+|+++++++++.+++.+..++.++.+.. .+|+.+.+|+
T Consensus 2 a~~~~I~~~C~~T--~~----~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~-~~~~~~~al~ 74 (150)
T 2cj4_A 2 AMNNLVETTCKNT--PN----YQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSN-PPAAWKGPLK 74 (150)
T ss_dssp --CHHHHHHHHTS--SC----HHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCGGGHHHHH
T ss_pred CchHHHHHHHcCC--CC----ccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence 4567999999998 44 599999999999988889999999999999999999999999988764 5788999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhcchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHHHhhc
Q 036528 95 DCFDLYSDAV-PTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIINML 171 (172)
Q Consensus 95 ~C~~~y~~a~-~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai~~~l 171 (172)
+|.++|++++ ++|++++++++.++|+++++|+|+|+++++||+|||.+ .++||..++.++.+|++|+|+|+++|
T Consensus 75 dC~e~y~~a~~~~L~~a~~~l~~~~~~~~~t~lsaAlt~~~tC~dgf~~---~~~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 75 NCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKG---SKSPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTT---SCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhCC---CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 79999999999999999999999999999999999973 35789999999999999999999876
No 3
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=7.2e-35 Score=209.83 Aligned_cols=150 Identities=25% Similarity=0.379 Sum_probs=136.0
Q ss_pred cccchhHHHHHhhhhhcCCCcccccchhccccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 036528 14 ITGHNIVHETCKKCAQNDPNISHNFCVTSLQADAKSQCANLGELGMISMKLTRENVTKTRSYIKDLLKKKKLDPFMRACL 93 (172)
Q Consensus 14 ~~~~~~i~~~C~~t~~~~p~v~~~~C~~~L~s~p~s~~~d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~k~~l 93 (172)
+++.+.|+++|++| .| |++|+++| +|++...|+.+|+++++++++.+++.+..+++++.+.. .+|+.+.+|
T Consensus 2 aa~~~~i~~~C~~T--~~----~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al 72 (153)
T 1x91_A 2 AMDSSEMSTICDKT--LN----PSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAY 72 (153)
T ss_dssp ---CCSTTTGGGGS--SC----HHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred CCcHHHHHHHhCCC--CC----hhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHH
Confidence 45678999999998 44 49999999 77776789999999999999999999999999998775 589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHhHHHHhhcccCCCcccccchhhhHHHHHhHHHHHHhhcC
Q 036528 94 HDCFDLYSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTTCEDGFKENQGAVSPLTKRNYDAFQLSVISLSIINMLK 172 (172)
Q Consensus 94 ~~C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~~~~~~~l~sialai~~~l~ 172 (172)
++|.++|++++++|++++++++.++|.++++|||+|+++++||+|||.+.++.++||..++.++.+|++|+|+|+++|.
T Consensus 73 ~dC~e~y~~a~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 73 RSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccHhHHHHHhccCCCCcCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999987644557899999999999999999999874
No 4
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=74.66 E-value=5.3 Score=27.00 Aligned_cols=27 Identities=7% Similarity=-0.009 Sum_probs=19.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Q 036528 51 CANLGELGMISMKLTRENVTKTRSYIK 77 (172)
Q Consensus 51 ~~d~~~l~~~ai~~a~~~a~~~~~~i~ 77 (172)
+++|.+|..+-.+-++.....+...+.
T Consensus 22 tasP~~Li~mLydgal~~l~~A~~ai~ 48 (131)
T 3iqc_A 22 VESPAKLIEMLYEGILRFSSQAKRCIE 48 (131)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888777777776666554
No 5
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=74.01 E-value=5.4 Score=27.47 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=19.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Q 036528 51 CANLGELGMISMKLTRENVTKTRSYIK 77 (172)
Q Consensus 51 ~~d~~~l~~~ai~~a~~~a~~~~~~i~ 77 (172)
+++|.+|+.+..+-++.....+...+.
T Consensus 19 tAsP~~Li~mLydgal~~l~~A~~aie 45 (145)
T 1vh6_A 19 TATPGELTLMLYNGCLKFIRLAAQAIE 45 (145)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888777777766666554
No 6
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=62.64 E-value=9.3 Score=25.76 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=17.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH
Q 036528 51 CANLGELGMISMKLTRENVTKTRSYI 76 (172)
Q Consensus 51 ~~d~~~l~~~ai~~a~~~a~~~~~~i 76 (172)
+++|.+|..+..+-++.....+...+
T Consensus 15 tAsP~~Li~mLydgai~~l~~A~~ai 40 (130)
T 1orj_A 15 TATPLEQIILLYDKAIECLERAIEIY 40 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888877776666555443
No 7
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=46.68 E-value=57 Score=23.92 Aligned_cols=45 Identities=9% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHhHHHhhhhh
Q 036528 88 FMRACLHDCFDLYSDAVPTLKQAMKDYKA--KQYEDANIGVSSVVDA 132 (172)
Q Consensus 88 ~~k~~l~~C~~~y~~a~~~L~~a~~~l~~--~~~~~~~~~lsaa~~~ 132 (172)
..+.+++.=.+...+++++|...+..+.+ |-...+-.|++.+++.
T Consensus 160 ~~H~~l~eaa~~l~eai~d~~~tl~~~ase~G~v~g~vd~i~~a~~~ 206 (216)
T 4f7g_B 160 HTQEALEEAVQMMTEAVEDLTTTLNEAASAAGVVGGMVDSITQAINQ 206 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHhhHHHHHHh
Confidence 34667777777777777777777776664 3455666677766653
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=27.02 E-value=97 Score=19.46 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH-----Hhc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036528 52 ANLGELGMISMKLTRENVTKTRSYIKDL-----LKK----KKLDPFMRACLHDCFDLYSDAVPTLKQAMKDYKA 116 (172)
Q Consensus 52 ~d~~~l~~~ai~~a~~~a~~~~~~i~~l-----~~~----~~~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l~~ 116 (172)
.|++.+. +....++......+.+.+. ... ...+..+..++..|.+-|-++-..+.+.+..+..
T Consensus 16 ~~~qk~~--~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 16 SSQQKIQ--AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp -CTTTTH--HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 3334444555555444332 111 1246788999999999999998888777766543
No 9
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=26.72 E-value=1.3e+02 Score=19.15 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHhHHHhhhhhHhH
Q 036528 100 YSDAVPTLKQAMKDYKAKQYEDANIGVSSVVDACTT 135 (172)
Q Consensus 100 y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~~~t 135 (172)
+..+-+.|..|-.++..++|..++...-.+..+..-
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArL 66 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARL 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHH
Confidence 677889999999999999999999988877765543
No 10
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=24.94 E-value=1e+02 Score=17.55 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036528 85 LDPFMRACLHDCFDLYSDAVPTLKQAMKD 113 (172)
Q Consensus 85 ~~~~~k~~l~~C~~~y~~a~~~L~~a~~~ 113 (172)
.+..+..++..|.+-|-++-..+.+.+..
T Consensus 34 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 34 LSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788899999999999998877665543
No 11
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.45 E-value=1e+02 Score=17.86 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cchhHHHhHH
Q 036528 95 DCFDLYSDAVPTLKQAMKDYKA--KQYEDANIGV 126 (172)
Q Consensus 95 ~C~~~y~~a~~~L~~a~~~l~~--~~~~~~~~~l 126 (172)
+|.+..-..-..-+.|.++|+. ++.+.+-.||
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3444443333333445555553 4566776665
No 12
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=21.93 E-value=1.5e+02 Score=18.23 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036528 85 LDPFMRACLHDCFDLYSDAVPTLKQAMKDYKA 116 (172)
Q Consensus 85 ~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l~~ 116 (172)
.+..+..++..|.+-|-++-..+...+..+..
T Consensus 50 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 50 LTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999998888887776554
No 13
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=21.22 E-value=1.7e+02 Score=18.62 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhcc--hhHHHhHHHhhhhhHhHHHHhhc
Q 036528 100 YSDAVPTLKQAMKDYKAKQ--YEDANIGVSSVVDACTTCEDGFK 141 (172)
Q Consensus 100 y~~a~~~L~~a~~~l~~~~--~~~~~~~lsaa~~~~~tC~d~f~ 141 (172)
|+.++.+|+.-+..|.+++ .+++-.....++.-...|...+.
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~ 75 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLA 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444432 23333444444444444444443
No 14
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.97 E-value=1.5e+02 Score=18.89 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhcchhHHHhHHHhh
Q 036528 106 TLKQAMKDYKAKQYEDANIGVSSV 129 (172)
Q Consensus 106 ~L~~a~~~l~~~~~~~~~~~lsaa 129 (172)
..-+|++..+.|+++.++..+..|
T Consensus 23 ~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 23 KLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334455555555555554444443
No 15
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=20.61 E-value=1.6e+02 Score=18.09 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036528 85 LDPFMRACLHDCFDLYSDAVPTLKQAMKDYKAK 117 (172)
Q Consensus 85 ~~~~~k~~l~~C~~~y~~a~~~L~~a~~~l~~~ 117 (172)
.+..+..++..|.+-|-++-..+...+..+...
T Consensus 43 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~ 75 (90)
T 2bsk_B 43 LSKGESVCLDRCVSKYLDIHERMGKKLTELSMQ 75 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999988888877766543
No 16
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.46 E-value=1.6e+02 Score=18.72 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhcchhHHHhHHHhhhh
Q 036528 104 VPTLKQAMKDYKAKQYEDANIGVSSVVD 131 (172)
Q Consensus 104 ~~~L~~a~~~l~~~~~~~~~~~lsaa~~ 131 (172)
....-+|++..+.|+++.++..+..|-.
T Consensus 19 rs~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 19 RSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344455555556666655555544433
No 17
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=20.35 E-value=92 Score=18.09 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 036528 93 LHDCFDLYSDAVPTLKQAMKDYK 115 (172)
Q Consensus 93 l~~C~~~y~~a~~~L~~a~~~l~ 115 (172)
+.+|.+....+-.++.+|+..|.
T Consensus 24 ~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 24 FVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555544444444444444444
No 18
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.18 E-value=1.6e+02 Score=18.94 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhcchhHHHhHHHhh
Q 036528 105 PTLKQAMKDYKAKQYEDANIGVSSV 129 (172)
Q Consensus 105 ~~L~~a~~~l~~~~~~~~~~~lsaa 129 (172)
...-+|++..+.++++.++..+..|
T Consensus 24 s~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 24 SFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555444443
Done!