BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036530
MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRRSFSSCSSAS
SARASVACDSNSTNGV

High Scoring Gene Products

Symbol, full name Information P value
AT1G30260 protein from Arabidopsis thaliana 2.8e-11
GALT2
AGP galactosyltransferase 2 		protein from Arabidopsis thaliana 1.2e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036530
        (76 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2009782 - symbol:AT1G30260 "AT1G30260" species...   155  2.8e-11   1
TAIR|locus:2133094 - symbol:GALT2 "AGP galactosyltransfer...   123  1.2e-06   1


>TAIR|locus:2009782 [details] [associations]
            symbol:AT1G30260 "AT1G30260" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009735 "response to cytokinin
            stimulus" evidence=IEP] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009735 EMBL:AC073506 EMBL:AY057696 EMBL:AY116947
            IPI:IPI00548505 PIR:H86426 RefSeq:NP_564352.1 UniGene:At.26235
            IntAct:Q9C754 EnsemblPlants:AT1G30260.1 GeneID:839906
            KEGG:ath:AT1G30260 TAIR:At1g30260 eggNOG:NOG247899
            HOGENOM:HOG000152185 InParanoid:Q9C754 OMA:RLARFIT PhylomeDB:Q9C754
            ProtClustDB:CLSN2688104 Genevestigator:Q9C754 Uniprot:Q9C754
        Length = 97

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 31/46 (67%), Positives = 39/46 (84%)

Query:     1 MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDAL 46
             MA SR+ARF  EVAPPQFV+VMR RT K+LDTI EEE++V G+D++
Sbjct:     1 MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREV-GTDSI 45


>TAIR|locus:2133094 [details] [associations]
            symbol:GALT2 "AGP galactosyltransferase 2" species:3702
            "Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
            [GO:0016757 "transferase activity, transferring glycosyl groups"
            evidence=ISS] [GO:0016758 "transferase activity, transferring
            hexosyl groups" evidence=ISS] [GO:0010405 "arabinogalactan protein
            metabolic process" evidence=IDA] [GO:0012505 "endomembrane system"
            evidence=IDA] [GO:0018258 "protein O-linked glycosylation via
            hydroxyproline" evidence=IDA] [GO:0035250
            "UDP-galactosyltransferase activity" evidence=IDA]
            InterPro:IPR001079 InterPro:IPR002659 Pfam:PF00337 Pfam:PF01762
            PROSITE:PS51304 SMART:SM00276 SMART:SM00908 GO:GO:0016021
            GO:GO:0005794 EMBL:CP002687 GO:GO:0030246 GO:GO:0006486
            GO:GO:0008378 Gene3D:2.60.120.200 InterPro:IPR008985
            InterPro:IPR013320 SUPFAM:SSF49899 PANTHER:PTHR11214
            IPI:IPI00529900 RefSeq:NP_193838.2 UniGene:At.32667
            ProteinModelPortal:F4JIK9 EnsemblPlants:AT4G21060.1 GeneID:827853
            KEGG:ath:AT4G21060 OMA:YSHSWKF ArrayExpress:F4JIK9 Uniprot:F4JIK9
        Length = 741

 Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 28/39 (71%), Positives = 30/39 (76%)

Query:     1 MANSRMARFFMEVAPPQFVSVMR-HRTPKM-LDTISEEE 37
             MA SR+ARF  EVAPPQFV+VMR HR  K  LDTI EEE
Sbjct:     1 MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEE 39


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.126   0.344    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        52   0.00091  102 3  10 22  0.38    27
                                                     29  0.47    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  468 (50 KB)
  Total size of DFA:  85 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.00u 0.13s 9.13t   Elapsed:  00:00:01
  Total cpu time:  9.00u 0.13s 9.13t   Elapsed:  00:00:01
  Start:  Mon May 20 16:36:39 2013   End:  Mon May 20 16:36:40 2013

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