Query 036530
Match_columns 76
No_of_seqs 32 out of 34
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 04:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hrn_A Transient receptor pote 27.6 6.8 0.00023 24.3 -1.2 12 27-38 51-62 (64)
2 3h09_A IGA1 protease, immunogl 15.5 32 0.0011 30.3 -0.1 18 4-21 143-160 (989)
3 3syj_A Adhesion and penetratio 12.4 43 0.0015 29.5 -0.1 17 4-20 119-135 (1011)
4 3qrx_B Melittin; calcium-bindi 9.3 16 0.00056 19.2 -2.4 11 16-26 14-24 (26)
5 3sze_A Serine protease ESPP; p 8.8 71 0.0024 28.1 -0.1 14 4-17 105-118 (968)
6 3od8_A Poly [ADP-ribose] polym 7.2 1.3E+02 0.0046 19.5 0.8 16 1-16 21-36 (116)
7 2dmj_A Poly (ADP-ribose) polym 6.7 1.6E+02 0.0055 18.3 0.9 16 1-16 8-23 (106)
8 1xdk_B RAR-beta, retinoic acid 6.0 1.5E+02 0.0052 20.7 0.6 26 39-64 269-294 (303)
9 3cxj_A Uncharacterized protein 5.7 3.6E+02 0.012 18.6 2.4 19 9-27 31-49 (165)
10 1wia_A Hypothetical ubiquitin- 5.6 3.1E+02 0.011 15.5 1.7 14 48-61 77-90 (95)
No 1
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=27.63 E-value=6.8 Score=24.29 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=10.4
Q ss_pred ccccccchhhcc
Q 036530 27 PKMLDTISEEEK 38 (76)
Q Consensus 27 ~~~LdTIaEEdr 38 (76)
-+.||+|+|||+
T Consensus 51 ~kll~~~~e~~~ 62 (64)
T 3hrn_A 51 GRLLDGVAEDER 62 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhccccHhhc
Confidence 478999999987
No 2
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}
Probab=15.46 E-value=32 Score=30.31 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=14.5
Q ss_pred chhhhceeeecCCceeee
Q 036530 4 SRMARFFMEVAPPQFVSV 21 (76)
Q Consensus 4 s~~ARf~mEVAPPq~iSv 21 (76)
-|+-+|++||||..+...
T Consensus 143 PRL~K~VTEvaP~~~t~~ 160 (989)
T 3h09_A 143 PRLDKFVTEVAPIEASTA 160 (989)
T ss_dssp CEESSCCCSSCCCCBCCS
T ss_pred cccccceeeecccccccC
Confidence 478899999999876544
No 3
>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Probab=12.38 E-value=43 Score=29.53 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=14.2
Q ss_pred chhhhceeeecCCceee
Q 036530 4 SRMARFFMEVAPPQFVS 20 (76)
Q Consensus 4 s~~ARf~mEVAPPq~iS 20 (76)
.|+-+|++||||.....
T Consensus 119 PRLnK~VTEvaP~~~t~ 135 (1011)
T 3syj_A 119 PRLHKFVTEAAPIDMTS 135 (1011)
T ss_dssp CEESSCCCSSCCCCBCC
T ss_pred ccccceEEeeccccccc
Confidence 57889999999987654
No 4
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=9.34 E-value=16 Score=19.21 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=6.5
Q ss_pred CceeeeeecCC
Q 036530 16 PQFVSVMRHRT 26 (76)
Q Consensus 16 Pq~iSv~R~r~ 26 (76)
|.+||++|+.+
T Consensus 14 P~liSWiK~kr 24 (26)
T 3qrx_B 14 PALISWIKRKR 24 (26)
T ss_pred hHHHHHHHHHh
Confidence 45667766543
No 5
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}
Probab=8.83 E-value=71 Score=28.06 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.1
Q ss_pred chhhhceeeecCCc
Q 036530 4 SRMARFFMEVAPPQ 17 (76)
Q Consensus 4 s~~ARf~mEVAPPq 17 (76)
.|+-+|++||||.-
T Consensus 105 pRLnK~VTEvaP~~ 118 (968)
T 3sze_A 105 SRLDKFVVETRGAT 118 (968)
T ss_dssp EEESSCCCSCCCCC
T ss_pred cccceeEEeccccc
Confidence 47889999999985
No 6
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=7.24 E-value=1.3e+02 Score=19.54 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=9.3
Q ss_pred CccchhhhceeeecCC
Q 036530 1 MANSRMARFFMEVAPP 16 (76)
Q Consensus 1 ma~s~~ARf~mEVAPP 16 (76)
||.+.--+|.+|+|+.
T Consensus 21 m~~~~~~~y~vEyAkS 36 (116)
T 3od8_A 21 MAESSDKLYRVEYAKS 36 (116)
T ss_dssp ----CCCSEEEEECSS
T ss_pred hhhccCCCEEEEEecc
Confidence 5566667788888885
No 7
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=6.67 E-value=1.6e+02 Score=18.33 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=10.4
Q ss_pred CccchhhhceeeecCC
Q 036530 1 MANSRMARFFMEVAPP 16 (76)
Q Consensus 1 ma~s~~ARf~mEVAPP 16 (76)
||.+.--+|.+|.||.
T Consensus 8 m~~~~~~~~~vEyAkS 23 (106)
T 2dmj_A 8 MAESSDKLYRVEYAKS 23 (106)
T ss_dssp CCCSCCCSEECEECCS
T ss_pred cccCCCCeEEEEEeCC
Confidence 4544445788888874
No 8
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=6.04 E-value=1.5e+02 Score=20.66 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=3.3
Q ss_pred cccCCCCccCCCCCCCCCCCcccccc
Q 036530 39 DVSGSDALASTRRSFSSCSSASSARA 64 (76)
Q Consensus 39 E~~~~ds~~s~p~~~~~~s~~ssa~~ 64 (76)
|....++-.++++++++|+|..|-++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (303)
T 1xdk_B 269 EPLTPSSSGNIAEHSPSVSPSSVENS 294 (303)
T ss_dssp SSCCCC--------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 45555667777888888888877664
No 9
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=5.75 E-value=3.6e+02 Score=18.61 Aligned_cols=19 Identities=0% Similarity=0.252 Sum_probs=13.6
Q ss_pred ceeeecCCceeeeeecCCc
Q 036530 9 FFMEVAPPQFVSVMRHRTP 27 (76)
Q Consensus 9 f~mEVAPPq~iSv~R~r~~ 27 (76)
|.+|.-|++++.|+|++.+
T Consensus 31 ~~v~~P~~p~~dVIrP~~k 49 (165)
T 3cxj_A 31 YVVNYPEDHVIDIIQPAGK 49 (165)
T ss_dssp EEEECSTTCEEEEEEESSC
T ss_pred EEEeCCCCCEEEEEeeCCC
Confidence 3455666678999999764
No 10
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=5.58 E-value=3.1e+02 Score=15.50 Aligned_cols=14 Identities=43% Similarity=0.188 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCccc
Q 036530 48 STRRSFSSCSSASS 61 (76)
Q Consensus 48 s~p~~~~~~s~~ss 61 (76)
..|...++.+++++
T Consensus 77 ~~~~~~~~~~~~~~ 90 (95)
T 1wia_A 77 SPPGAAVSGPSASS 90 (95)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444443
Done!