Query 036530
Match_columns 76
No_of_seqs 32 out of 34
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 04:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036530.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036530hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xr4a2 c.124.1.2 (A:237-505) 6.8 75 0.0055 21.2 1.1 29 6-34 233-266 (269)
2 d2ja9a2 d.51.1.1 (A:152-236) R 6.6 11 0.00078 21.9 -3.1 28 9-36 3-30 (85)
3 d1utga_ a.101.1.1 (A:) Uterogl 6.5 30 0.0022 19.9 -1.1 14 27-40 42-55 (70)
4 d1wv3a1 b.26.1.4 (A:1-78) Prot 5.5 58 0.0042 19.0 -0.1 10 31-40 23-32 (78)
5 d1nd9a_ a.6.1.6 (A:) N-termina 5.1 90 0.0066 16.4 0.5 10 30-39 33-42 (49)
6 d2bv3a4 d.58.11.1 (A:404-478) 4.8 1.2E+02 0.0088 16.3 1.0 13 27-39 22-34 (75)
7 d2ftxa1 d.300.1.1 (A:133-221) 4.8 1.1E+02 0.0078 18.2 0.7 9 7-15 35-43 (89)
8 d1iq0a3 d.67.2.1 (A:1-96) Argi 4.3 1.9E+02 0.014 15.7 1.6 12 11-23 71-82 (96)
9 d1seta2 d.104.1.1 (A:111-421) 4.3 99 0.0072 20.9 0.3 17 5-21 70-86 (311)
10 d1np7a2 c.28.1.1 (A:1-204) Cry 4.2 1.5E+02 0.011 17.5 1.2 14 11-24 1-14 (204)
No 1
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}
Probab=6.85 E-value=75 Score=21.20 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred hhhceeeecCC-c----eeeeeecCCccccccch
Q 036530 6 MARFFMEVAPP-Q----FVSVMRHRTPKMLDTIS 34 (76)
Q Consensus 6 ~ARf~mEVAPP-q----~iSv~R~r~~~~LdTIa 34 (76)
-|+-++++|.| + ++-++..|.-..+|+|-
T Consensus 233 ra~~li~ia~P~~f~d~l~a~~e~Rdgt~id~~~ 266 (269)
T d1xr4a2 233 RAEQLTGKPQPIEFTDRVVAVVRYRDGSVIDVIR 266 (269)
T ss_dssp HHHHHHCCCCCCCEEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHhcCCCCCCcchhHHHhhhhcCCCeEeeEE
Confidence 46677899988 3 57888889888888874
No 2
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=6.63 E-value=11 Score=21.94 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=15.5
Q ss_pred ceeeecCCceeeeeecCCccccccchhh
Q 036530 9 FFMEVAPPQFVSVMRHRTPKMLDTISEE 36 (76)
Q Consensus 9 f~mEVAPPq~iSv~R~r~~~~LdTIaEE 36 (76)
|+++|.|...-.++......||++|.+.
T Consensus 3 ~v~~vs~~~~rrll~~~~~~ml~~l~~~ 30 (85)
T d2ja9a2 3 MIIDVNLNFARQLLFNNDFPLLKVLAAH 30 (85)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTT
T ss_pred EEEEecHHHHHHHHcCCCChHHHHHHhh
Confidence 3445544443344444556788888774
No 3
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=6.46 E-value=30 Score=19.93 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=11.2
Q ss_pred ccccccchhhcccc
Q 036530 27 PKMLDTISEEEKDV 40 (76)
Q Consensus 27 ~~~LdTIaEEdrE~ 40 (76)
++..||..||||+.
T Consensus 42 K~cvDtLt~edK~~ 55 (70)
T d1utga_ 42 KKVLDSLPQTTREN 55 (70)
T ss_dssp HHHHTTSCHHHHHH
T ss_pred HHHHhcCCHHHHHH
Confidence 46789999999864
No 4
>d1wv3a1 b.26.1.4 (A:1-78) Protein EssC {Staphylococcus aureus [TaxId: 1280]}
Probab=5.53 E-value=58 Score=19.03 Aligned_cols=10 Identities=50% Similarity=0.511 Sum_probs=7.8
Q ss_pred ccchhhcccc
Q 036530 31 DTISEEEKDV 40 (76)
Q Consensus 31 dTIaEEdrE~ 40 (76)
-||.||||-.
T Consensus 23 ytisederad 32 (78)
T d1wv3a1 23 YTISEDERAD 32 (78)
T ss_dssp EEEESCTTSS
T ss_pred EEeccccccc
Confidence 4899999843
No 5
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=5.08 E-value=90 Score=16.42 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=8.0
Q ss_pred cccchhhccc
Q 036530 30 LDTISEEEKD 39 (76)
Q Consensus 30 LdTIaEEdrE 39 (76)
=|.|+|+|++
T Consensus 33 ~D~vt~~eK~ 42 (49)
T d1nd9a_ 33 DDSVSAQEKQ 42 (49)
T ss_dssp SSCEETTGGG
T ss_pred CCccCHHHHH
Confidence 4889998875
No 6
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=4.81 E-value=1.2e+02 Score=16.30 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=1.9
Q ss_pred ccccccchhhccc
Q 036530 27 PKMLDTISEEEKD 39 (76)
Q Consensus 27 ~~~LdTIaEEdrE 39 (76)
...|..+.|||.-
T Consensus 22 ~~aL~~L~~EDPs 34 (75)
T d2bv3a4 22 SQALARLAEESPT 34 (75)
T ss_dssp ----------CCS
T ss_pred HHHHHHHHhhCCc
Confidence 3588889998863
No 7
>d2ftxa1 d.300.1.1 (A:133-221) Kinetochore protein Spc25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.78 E-value=1.1e+02 Score=18.16 Aligned_cols=9 Identities=44% Similarity=0.670 Sum_probs=7.0
Q ss_pred hhceeeecC
Q 036530 7 ARFFMEVAP 15 (76)
Q Consensus 7 ARf~mEVAP 15 (76)
.|-|+|||=
T Consensus 35 srcwievam 43 (89)
T d2ftxa1 35 SRCWIEVAM 43 (89)
T ss_dssp SSEEEEECS
T ss_pred CceEEEEee
Confidence 577999984
No 8
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}
Probab=4.33 E-value=1.9e+02 Score=15.70 Aligned_cols=12 Identities=0% Similarity=-0.094 Sum_probs=9.2
Q ss_pred eeecCCceeeeee
Q 036530 11 MEVAPPQFVSVMR 23 (76)
Q Consensus 11 mEVAPPq~iSv~R 23 (76)
+||++| ||.+.=
T Consensus 71 v~~~gp-FiNf~l 82 (96)
T d1iq0a3 71 AVPVGG-YLNFRL 82 (96)
T ss_dssp EEEETT-EEEEEE
T ss_pred eEeeCC-eEEEEE
Confidence 689998 887743
No 9
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=4.27 E-value=99 Score=20.86 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=13.4
Q ss_pred hhhhceeeecCCceeee
Q 036530 5 RMARFFMEVAPPQFVSV 21 (76)
Q Consensus 5 ~~ARf~mEVAPPq~iSv 21 (76)
...+-++||.||.++.-
T Consensus 70 ~~~~gy~~v~~P~lv~~ 86 (311)
T d1seta2 70 MARRGFLPMTLPSYARE 86 (311)
T ss_dssp HHHTTCEEEECCSEEEH
T ss_pred hhcccceEEeechhhcc
Confidence 45677999999998854
No 10
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=4.22 E-value=1.5e+02 Score=17.45 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.3
Q ss_pred eeecCCceeeeeec
Q 036530 11 MEVAPPQFVSVMRH 24 (76)
Q Consensus 11 mEVAPPq~iSv~R~ 24 (76)
|-+.||.+|.+.|+
T Consensus 1 m~~~p~~~lvWfr~ 14 (204)
T d1np7a2 1 MKHVPPTVLVWFRN 14 (204)
T ss_dssp CCCCCCEEEEEESS
T ss_pred CCCCCCcEEEEeCC
Confidence 45679999999986
Done!