Query 036531
Match_columns 317
No_of_seqs 214 out of 1178
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 1.8E-13 3.9E-18 98.8 5.8 52 124-175 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 5.8E-13 1.2E-17 97.0 5.9 56 123-178 3-59 (60)
3 smart00353 HLH helix loop heli 99.3 2.6E-12 5.5E-17 91.7 5.8 51 129-179 1-52 (53)
4 KOG1318 Helix loop helix trans 99.1 1.4E-09 3E-14 107.3 12.9 67 113-179 221-290 (411)
5 KOG1319 bHLHZip transcription 98.8 2E-08 4.4E-13 89.1 7.1 68 124-191 62-134 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 98.6 5.6E-07 1.2E-11 69.5 10.3 69 241-309 3-74 (75)
7 KOG3960 Myogenic helix-loop-he 98.5 2.3E-07 4.9E-12 85.8 6.8 67 122-189 116-183 (284)
8 KOG4304 Transcriptional repres 98.4 2.5E-07 5.3E-12 86.7 4.1 60 121-180 29-94 (250)
9 KOG2483 Upstream transcription 98.4 1.4E-06 3E-11 80.7 8.1 64 125-188 60-124 (232)
10 cd04895 ACT_ACR_1 ACT domain-c 98.3 9.4E-06 2E-10 62.2 9.9 67 240-307 2-68 (72)
11 cd04896 ACT_ACR-like_3 ACT dom 98.2 1.4E-05 3.1E-10 61.7 10.2 66 241-307 2-72 (75)
12 KOG3561 Aryl-hydrocarbon recep 98.2 1E-06 2.2E-11 93.6 4.8 52 125-177 21-75 (803)
13 cd04927 ACT_ACR-like_2 Second 98.2 1.9E-05 4.2E-10 60.6 10.6 50 240-289 1-51 (76)
14 cd04900 ACT_UUR-like_1 ACT dom 98.2 3.5E-05 7.6E-10 58.3 11.0 53 241-293 3-56 (73)
15 KOG2588 Predicted DNA-binding 98.1 2.8E-06 6.1E-11 90.6 5.4 67 122-189 274-340 (953)
16 cd04925 ACT_ACR_2 ACT domain-c 98.0 8.1E-05 1.8E-09 56.7 10.8 49 241-289 2-50 (74)
17 cd04928 ACT_TyrKc Uncharacteri 97.9 0.00015 3.3E-09 55.0 9.8 64 241-307 3-67 (68)
18 cd04899 ACT_ACR-UUR-like_2 C-t 97.8 0.00038 8.3E-09 51.3 10.7 65 241-307 2-66 (70)
19 cd04926 ACT_ACR_4 C-terminal 97.8 0.00035 7.6E-09 52.8 10.0 66 241-308 3-68 (72)
20 KOG4029 Transcription factor H 97.6 6.1E-05 1.3E-09 69.5 4.5 62 124-185 109-172 (228)
21 PLN03217 transcription factor 97.5 0.00018 3.8E-09 56.5 5.3 55 137-191 20-78 (93)
22 PF13740 ACT_6: ACT domain; PD 97.5 0.00087 1.9E-08 51.2 9.2 68 239-310 2-69 (76)
23 KOG0561 bHLH transcription fac 97.5 7.9E-05 1.7E-09 70.8 3.7 59 124-182 60-118 (373)
24 cd04873 ACT_UUR-ACR-like ACT d 97.3 0.0049 1.1E-07 44.9 10.2 51 241-291 2-52 (70)
25 cd04893 ACT_GcvR_1 ACT domains 97.2 0.005 1.1E-07 47.1 9.9 66 240-309 2-67 (77)
26 PF01842 ACT: ACT domain; Int 97.2 0.0042 9.2E-08 44.7 8.9 63 241-306 2-64 (66)
27 PRK00275 glnD PII uridylyl-tra 97.2 0.0037 8E-08 68.4 12.4 82 229-310 802-888 (895)
28 PRK05007 PII uridylyl-transfer 97.1 0.0029 6.3E-08 69.1 11.0 71 237-307 806-878 (884)
29 PF13291 ACT_4: ACT domain; PD 97.1 0.0018 3.8E-08 49.5 6.6 50 240-289 7-58 (80)
30 cd04869 ACT_GcvR_2 ACT domains 97.0 0.01 2.2E-07 45.1 10.2 66 242-310 2-73 (81)
31 KOG4447 Transcription factor T 96.9 0.0011 2.5E-08 57.4 4.7 65 115-179 69-133 (173)
32 PRK05092 PII uridylyl-transfer 96.9 0.0067 1.4E-07 66.6 11.6 81 229-309 831-916 (931)
33 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0059 1.3E-07 47.6 8.1 69 240-310 2-70 (88)
34 PRK00194 hypothetical protein; 96.9 0.0073 1.6E-07 47.1 8.6 70 239-310 3-72 (90)
35 cd04875 ACT_F4HF-DF N-terminal 96.9 0.012 2.7E-07 44.2 9.4 69 242-310 2-70 (74)
36 PRK04374 PII uridylyl-transfer 96.9 0.0082 1.8E-07 65.5 11.7 79 229-307 784-866 (869)
37 cd04870 ACT_PSP_1 CT domains f 96.8 0.012 2.6E-07 44.6 9.0 66 242-310 2-67 (75)
38 PRK01759 glnD PII uridylyl-tra 96.8 0.0073 1.6E-07 65.8 10.5 68 239-306 783-852 (854)
39 cd04887 ACT_MalLac-Enz ACT_Mal 96.7 0.0086 1.9E-07 44.6 7.5 49 242-290 2-51 (74)
40 PRK03381 PII uridylyl-transfer 96.6 0.016 3.4E-07 62.6 11.3 71 237-308 597-667 (774)
41 PRK03059 PII uridylyl-transfer 96.5 0.011 2.5E-07 64.3 9.8 49 238-286 785-833 (856)
42 TIGR01693 UTase_glnD [Protein- 96.5 0.018 3.9E-07 62.6 11.3 72 237-308 666-741 (850)
43 cd04886 ACT_ThrD-II-like C-ter 96.5 0.015 3.4E-07 42.0 7.3 47 242-288 1-52 (73)
44 PRK03381 PII uridylyl-transfer 96.5 0.018 3.9E-07 62.2 10.5 66 238-306 706-771 (774)
45 TIGR01693 UTase_glnD [Protein- 96.4 0.02 4.4E-07 62.3 10.7 57 238-294 778-834 (850)
46 PRK01759 glnD PII uridylyl-tra 96.1 0.044 9.5E-07 59.9 11.5 79 228-307 664-748 (854)
47 cd04888 ACT_PheB-BS C-terminal 96.1 0.024 5.2E-07 42.2 6.7 48 241-288 2-50 (76)
48 PRK05007 PII uridylyl-transfer 96.1 0.049 1.1E-06 59.7 11.6 78 229-307 689-772 (884)
49 PRK00275 glnD PII uridylyl-tra 96.0 0.052 1.1E-06 59.6 11.3 70 238-307 703-777 (895)
50 COG2844 GlnD UTP:GlnB (protein 96.0 0.035 7.6E-07 59.6 9.3 77 229-307 779-857 (867)
51 PRK05092 PII uridylyl-transfer 95.9 0.065 1.4E-06 59.0 11.7 79 229-307 720-804 (931)
52 PRK03059 PII uridylyl-transfer 95.9 0.056 1.2E-06 59.1 10.9 70 237-307 676-749 (856)
53 KOG3910 Helix loop helix trans 95.7 0.035 7.5E-07 56.4 7.5 57 123-181 525-585 (632)
54 PRK04374 PII uridylyl-transfer 95.6 0.079 1.7E-06 58.0 10.4 70 238-307 689-759 (869)
55 cd04877 ACT_TyrR N-terminal AC 95.4 0.043 9.3E-07 41.3 5.7 45 241-288 2-46 (74)
56 PRK04435 hypothetical protein; 95.4 0.086 1.9E-06 45.6 8.3 54 235-288 65-119 (147)
57 cd04876 ACT_RelA-SpoT ACT dom 95.3 0.069 1.5E-06 37.0 6.3 47 242-288 1-48 (71)
58 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.1 0.072 1.6E-06 39.0 5.9 48 240-287 1-50 (79)
59 cd02116 ACT ACT domains are co 95.0 0.15 3.2E-06 33.4 6.9 35 242-276 1-35 (60)
60 cd04878 ACT_AHAS N-terminal AC 95.0 0.13 2.9E-06 36.8 7.0 47 241-287 2-50 (72)
61 PRK08577 hypothetical protein; 94.7 0.28 6.1E-06 41.5 9.2 66 238-305 55-122 (136)
62 cd04894 ACT_ACR-like_1 ACT dom 94.5 0.26 5.7E-06 37.0 7.4 66 241-306 2-67 (69)
63 cd04880 ACT_AAAH-PDT-like ACT 94.4 0.44 9.5E-06 35.7 8.8 47 243-289 3-50 (75)
64 PRK13011 formyltetrahydrofolat 94.4 0.39 8.6E-06 46.0 10.4 72 239-311 7-78 (286)
65 cd04884 ACT_CBS C-terminal ACT 94.3 0.32 7E-06 36.1 7.9 61 242-305 2-65 (72)
66 PRK07334 threonine dehydratase 94.3 0.19 4.1E-06 50.1 8.4 51 239-289 326-381 (403)
67 PRK06027 purU formyltetrahydro 94.1 0.48 1E-05 45.4 10.4 72 238-311 5-78 (286)
68 cd04874 ACT_Af1403 N-terminal 94.1 0.43 9.3E-06 34.3 7.9 43 241-283 2-45 (72)
69 KOG3898 Transcription factor N 94.0 0.073 1.6E-06 50.2 4.6 56 122-177 70-126 (254)
70 cd04905 ACT_CM-PDT C-terminal 93.7 0.89 1.9E-05 34.5 9.4 63 241-306 3-66 (80)
71 cd04879 ACT_3PGDH-like ACT_3PG 93.6 0.61 1.3E-05 33.1 8.0 44 242-285 2-47 (71)
72 PRK13010 purU formyltetrahydro 93.3 0.54 1.2E-05 45.1 9.3 71 239-310 9-81 (289)
73 cd04882 ACT_Bt0572_2 C-termina 93.2 0.53 1.2E-05 33.5 7.1 56 242-305 2-59 (65)
74 KOG3560 Aryl-hydrocarbon recep 93.1 0.048 1E-06 56.1 1.8 43 130-172 31-75 (712)
75 cd04909 ACT_PDH-BS C-terminal 93.0 0.77 1.7E-05 33.5 7.8 35 241-275 3-37 (69)
76 TIGR00655 PurU formyltetrahydr 92.9 0.82 1.8E-05 43.7 9.8 68 241-310 2-72 (280)
77 cd04903 ACT_LSD C-terminal ACT 92.7 0.78 1.7E-05 32.7 7.4 58 242-305 2-61 (71)
78 cd04883 ACT_AcuB C-terminal AC 92.6 1.5 3.2E-05 32.0 8.9 59 241-305 3-63 (72)
79 cd04908 ACT_Bt0572_1 N-termina 92.6 1.4 2.9E-05 32.2 8.6 45 241-287 3-47 (66)
80 cd04885 ACT_ThrD-I Tandem C-te 92.1 0.78 1.7E-05 33.9 6.8 59 243-305 2-61 (68)
81 cd04889 ACT_PDH-BS-like C-term 92.0 0.66 1.4E-05 32.6 6.2 45 242-286 1-46 (56)
82 cd04904 ACT_AAAH ACT domain of 92.0 1.1 2.3E-05 33.9 7.6 47 243-289 4-51 (74)
83 cd04931 ACT_PAH ACT domain of 91.9 1.2 2.6E-05 35.5 8.1 63 240-306 15-78 (90)
84 PRK11589 gcvR glycine cleavage 91.9 0.82 1.8E-05 41.3 8.0 72 240-314 96-173 (190)
85 COG2844 GlnD UTP:GlnB (protein 90.7 1.6 3.5E-05 47.4 9.8 83 229-312 674-757 (867)
86 PRK11895 ilvH acetolactate syn 90.7 1.1 2.4E-05 39.5 7.4 64 241-308 4-69 (161)
87 CHL00100 ilvH acetohydroxyacid 90.4 1.5 3.2E-05 39.2 8.0 70 241-312 4-73 (174)
88 TIGR00119 acolac_sm acetolacta 90.4 1.1 2.4E-05 39.3 7.2 64 241-308 3-68 (157)
89 PRK11152 ilvM acetolactate syn 89.9 1.4 3.1E-05 34.0 6.6 64 240-308 4-69 (76)
90 PRK11589 gcvR glycine cleavage 89.6 1 2.3E-05 40.6 6.6 66 238-307 7-72 (190)
91 cd04901 ACT_3PGDH C-terminal A 89.4 0.39 8.4E-06 34.8 3.0 46 242-287 2-47 (69)
92 PRK06737 acetolactate synthase 89.3 1.3 2.9E-05 34.2 6.0 64 240-307 3-68 (76)
93 PRK13562 acetolactate synthase 89.1 1.3 2.9E-05 35.0 5.9 65 241-308 4-70 (84)
94 PRK10872 relA (p)ppGpp synthet 89.0 1.2 2.7E-05 48.0 7.6 51 240-290 667-719 (743)
95 PF05088 Bac_GDH: Bacterial NA 89.0 2.7 5.9E-05 48.8 10.6 72 238-310 488-564 (1528)
96 PF13710 ACT_5: ACT domain; PD 88.8 0.89 1.9E-05 33.6 4.6 56 248-307 1-58 (63)
97 cd04929 ACT_TPH ACT domain of 88.5 4.7 0.0001 30.7 8.5 45 245-289 6-51 (74)
98 cd04930 ACT_TH ACT domain of t 87.1 4.2 9.1E-05 33.8 8.1 50 240-289 42-92 (115)
99 PRK11092 bifunctional (p)ppGpp 86.9 1.9 4.1E-05 46.4 7.4 50 240-289 627-677 (702)
100 COG3830 ACT domain-containing 86.9 1.6 3.5E-05 34.9 5.2 70 239-310 3-72 (90)
101 KOG3558 Hypoxia-inducible fact 86.8 1.1 2.4E-05 47.6 5.4 49 125-173 47-97 (768)
102 TIGR00691 spoT_relA (p)ppGpp s 86.3 2.1 4.6E-05 45.8 7.4 51 240-290 611-662 (683)
103 cd04906 ACT_ThrD-I_1 First of 86.0 5 0.00011 31.0 7.6 62 240-305 2-64 (85)
104 COG0788 PurU Formyltetrahydrof 84.1 6.6 0.00014 37.6 8.7 70 238-309 6-77 (287)
105 KOG3559 Transcriptional regula 84.0 0.94 2E-05 45.5 3.2 45 130-174 7-53 (598)
106 PRK08198 threonine dehydratase 83.9 5.4 0.00012 39.6 8.6 51 237-287 325-380 (404)
107 KOG4395 Transcription factor A 83.8 1.9 4.1E-05 40.7 4.9 55 125-179 175-230 (285)
108 cd04902 ACT_3PGDH-xct C-termin 83.4 3.3 7.1E-05 30.0 5.3 45 242-286 2-48 (73)
109 PRK08178 acetolactate synthase 82.1 5.3 0.00011 32.4 6.3 66 238-308 7-74 (96)
110 TIGR01127 ilvA_1Cterm threonin 81.5 7.9 0.00017 38.0 8.7 66 237-305 303-373 (380)
111 PRK06382 threonine dehydratase 81.2 6.7 0.00015 39.1 8.2 66 237-305 328-398 (406)
112 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.9 12 0.00026 26.5 7.4 59 241-307 3-64 (66)
113 COG4492 PheB ACT domain-contai 79.8 11 0.00023 32.6 7.6 65 238-304 71-136 (150)
114 KOG4447 Transcription factor T 78.5 2.3 4.9E-05 37.3 3.2 45 131-175 29-73 (173)
115 PRK00227 glnD PII uridylyl-tra 77.5 13 0.00028 40.1 9.3 70 236-307 543-613 (693)
116 PRK11899 prephenate dehydratas 77.1 20 0.00043 34.3 9.6 64 240-306 195-259 (279)
117 KOG3582 Mlx interactors and re 76.6 2.3 4.9E-05 45.3 3.2 67 123-189 650-719 (856)
118 cd04919 ACT_AK-Hom3_2 ACT doma 75.8 21 0.00046 25.3 7.5 58 241-306 3-63 (66)
119 PRK08526 threonine dehydratase 75.7 13 0.00028 37.3 8.3 65 237-304 324-393 (403)
120 KOG4005 Transcription factor X 74.6 14 0.0003 34.8 7.4 59 125-191 60-119 (292)
121 COG2061 ACT-domain-containing 72.8 19 0.00042 31.7 7.5 49 240-288 6-57 (170)
122 cd04933 ACT_AK1-AT_1 ACT domai 72.6 32 0.0007 26.5 8.1 67 241-314 3-72 (78)
123 cd04937 ACT_AKi-DapG-BS_2 ACT 72.4 28 0.00062 25.0 7.4 57 241-307 3-62 (64)
124 cd04892 ACT_AK-like_2 ACT doma 70.8 30 0.00066 23.5 7.3 34 241-274 2-38 (65)
125 cd04916 ACT_AKiii-YclM-BS_2 AC 70.3 34 0.00074 24.0 7.4 59 241-307 3-64 (66)
126 COG0317 SpoT Guanosine polypho 65.1 19 0.00042 38.8 7.2 51 239-289 627-678 (701)
127 cd04924 ACT_AK-Arch_2 ACT doma 63.9 47 0.001 23.2 7.3 59 241-307 3-64 (66)
128 cd04918 ACT_AK1-AT_2 ACT domai 63.8 30 0.00065 25.0 6.1 52 248-307 12-63 (65)
129 PRK11898 prephenate dehydratas 63.2 47 0.001 31.7 8.9 64 240-306 197-262 (283)
130 PRK15385 magnesium transport p 63.2 64 0.0014 30.1 9.4 38 238-275 141-180 (225)
131 PF02120 Flg_hook: Flagellar h 62.8 28 0.00061 26.3 6.0 47 229-275 27-79 (85)
132 cd04915 ACT_AK-Ectoine_2 ACT d 62.4 54 0.0012 23.9 7.3 51 249-307 14-64 (66)
133 COG0077 PheA Prephenate dehydr 62.1 53 0.0011 31.6 8.9 66 239-307 194-260 (279)
134 cd04890 ACT_AK-like_1 ACT doma 62.0 53 0.0011 23.1 7.6 25 248-272 12-36 (62)
135 PRK10622 pheA bifunctional cho 61.2 57 0.0012 32.6 9.3 62 242-306 300-362 (386)
136 COG2716 GcvR Glycine cleavage 60.9 33 0.00071 30.8 6.7 75 239-316 92-172 (176)
137 TIGR02079 THD1 threonine dehyd 60.4 45 0.00097 33.4 8.5 66 237-305 323-390 (409)
138 cd04932 ACT_AKiii-LysC-EC_1 AC 59.4 75 0.0016 24.0 8.4 57 247-310 12-68 (75)
139 cd04920 ACT_AKiii-DAPDC_2 ACT 55.5 54 0.0012 23.6 6.2 24 248-271 12-35 (63)
140 COG3978 Acetolactate synthase 54.8 94 0.002 24.6 7.5 64 240-308 4-69 (86)
141 cd04868 ACT_AK-like ACT domain 54.1 60 0.0013 21.4 6.0 26 249-274 13-38 (60)
142 PF02344 Myc-LZ: Myc leucine z 53.8 15 0.00031 23.9 2.4 18 131-148 12-29 (32)
143 cd04912 ACT_AKiii-LysC-EC-like 53.1 81 0.0018 23.4 7.0 31 241-271 3-36 (75)
144 cd04923 ACT_AK-LysC-DapG-like_ 52.9 72 0.0016 21.8 6.8 31 242-272 3-36 (63)
145 COG4747 ACT domain-containing 52.9 49 0.0011 28.2 6.1 39 241-279 5-43 (142)
146 TIGR01268 Phe4hydrox_tetr phen 52.8 70 0.0015 32.7 8.4 50 240-289 17-67 (436)
147 cd04907 ACT_ThrD-I_2 Second of 52.6 1.1E+02 0.0023 23.6 7.7 59 240-305 2-63 (81)
148 KOG3119 Basic region leucine z 51.8 2E+02 0.0043 27.3 10.9 27 165-191 218-244 (269)
149 cd04934 ACT_AK-Hom3_1 CT domai 50.7 1E+02 0.0023 23.1 7.4 32 241-272 3-37 (73)
150 cd04936 ACT_AKii-LysC-BS-like_ 50.0 81 0.0018 21.6 6.8 25 248-272 12-36 (63)
151 PRK08639 threonine dehydratase 49.2 91 0.002 31.3 8.6 66 237-305 334-401 (420)
152 PRK00227 glnD PII uridylyl-tra 49.1 29 0.00062 37.5 5.2 59 240-307 632-690 (693)
153 cd04898 ACT_ACR-like_4 ACT dom 47.7 45 0.00097 26.0 4.7 50 242-291 3-54 (77)
154 TIGR01270 Trp_5_monoox tryptop 47.3 74 0.0016 32.8 7.6 49 240-288 32-82 (464)
155 PF13840 ACT_7: ACT domain ; P 47.2 60 0.0013 23.7 5.3 32 240-271 7-42 (65)
156 PLN02317 arogenate dehydratase 47.0 1.4E+02 0.0031 30.0 9.5 49 241-289 285-348 (382)
157 PRK12483 threonine dehydratase 46.4 1.3E+02 0.0028 31.4 9.5 51 237-289 343-394 (521)
158 PRK09224 threonine dehydratase 46.1 1.3E+02 0.0027 31.2 9.3 65 237-305 326-391 (504)
159 cd04913 ACT_AKii-LysC-BS-like_ 46.0 88 0.0019 22.0 6.1 27 247-273 10-36 (75)
160 TIGR01124 ilvA_2Cterm threonin 46.0 1E+02 0.0022 31.9 8.6 64 237-305 323-387 (499)
161 COG0440 IlvH Acetolactate synt 45.6 62 0.0013 28.7 5.9 66 241-310 6-73 (163)
162 KOG2391 Vacuolar sorting prote 42.3 3.2E+02 0.007 27.2 10.8 23 126-148 211-235 (365)
163 cd04921 ACT_AKi-HSDH-ThrA-like 40.9 1.4E+02 0.0031 21.8 7.0 59 241-307 3-64 (80)
164 COG2716 GcvR Glycine cleavage 40.3 29 0.00063 31.1 3.1 62 239-304 5-66 (176)
165 PLN02705 beta-amylase 40.0 2.2E+02 0.0048 30.5 9.8 25 125-149 85-109 (681)
166 TIGR00656 asp_kin_monofn aspar 39.7 1.7E+02 0.0036 28.9 8.8 67 233-307 254-323 (401)
167 PF06005 DUF904: Protein of un 39.3 54 0.0012 25.1 4.1 26 164-189 13-38 (72)
168 cd04935 ACT_AKiii-DAPDC_1 ACT 38.3 1.7E+02 0.0037 21.9 7.7 26 247-272 12-37 (75)
169 PF01545 Cation_efflux: Cation 37.6 2E+02 0.0044 26.4 8.5 57 252-308 206-265 (284)
170 COG3074 Uncharacterized protei 36.1 59 0.0013 25.0 3.7 27 164-190 13-39 (79)
171 PRK06291 aspartate kinase; Pro 35.5 2E+02 0.0044 29.2 8.8 67 233-307 392-461 (465)
172 PRK09034 aspartate kinase; Rev 35.0 1.8E+02 0.0038 29.6 8.2 67 233-307 379-448 (454)
173 PLN02550 threonine dehydratase 34.3 1.5E+02 0.0033 31.5 7.8 48 239-288 417-465 (591)
174 PRK14637 hypothetical protein; 34.0 1.9E+02 0.004 25.2 7.1 58 248-308 6-66 (151)
175 cd04911 ACT_AKiii-YclM-BS_1 AC 34.0 1.1E+02 0.0023 23.7 5.0 25 248-272 13-37 (76)
176 PRK00907 hypothetical protein; 33.7 1.2E+02 0.0026 24.2 5.4 50 239-288 17-70 (92)
177 PLN02551 aspartokinase 33.3 2.4E+02 0.0052 29.4 9.0 63 237-307 443-507 (521)
178 PF05687 DUF822: Plant protein 32.3 55 0.0012 28.6 3.4 25 125-149 12-36 (150)
179 PRK06291 aspartate kinase; Pro 31.6 2.5E+02 0.0055 28.5 8.7 40 237-276 319-361 (465)
180 PF04455 Saccharop_dh_N: LOR/S 31.3 1.5E+02 0.0031 24.4 5.6 59 249-310 14-75 (103)
181 smart00338 BRLZ basic region l 30.9 61 0.0013 23.6 3.1 22 169-190 26-47 (65)
182 PRK07431 aspartate kinase; Pro 30.2 2.6E+02 0.0055 29.3 8.7 66 232-307 341-409 (587)
183 PRK11020 hypothetical protein; 29.7 93 0.002 26.1 4.2 53 132-186 3-55 (118)
184 TIGR00656 asp_kin_monofn aspar 29.7 3E+02 0.0066 27.0 8.8 61 237-307 335-398 (401)
185 cd04871 ACT_PSP_2 ACT domains 29.5 64 0.0014 24.9 3.1 65 242-310 2-76 (84)
186 PRK08210 aspartate kinase I; R 29.2 2.8E+02 0.006 27.5 8.4 66 232-307 332-400 (403)
187 PRK15422 septal ring assembly 29.2 92 0.002 24.4 3.9 28 164-191 13-40 (79)
188 PF15392 Joubert: Joubert synd 29.0 1.5E+02 0.0033 29.0 6.1 53 125-177 57-112 (329)
189 PRK09436 thrA bifunctional asp 29.0 3.1E+02 0.0067 30.3 9.3 67 233-307 390-459 (819)
190 PF06785 UPF0242: Uncharacteri 28.5 2.3E+02 0.0051 28.2 7.3 33 157-189 189-221 (401)
191 PRK14639 hypothetical protein; 28.4 1.8E+02 0.004 24.8 6.0 50 256-308 3-55 (140)
192 cd04917 ACT_AKiii-LysC-EC_2 AC 28.1 2.2E+02 0.0047 20.1 6.8 27 241-267 3-32 (64)
193 PRK06635 aspartate kinase; Rev 28.0 2.6E+02 0.0056 27.6 7.9 39 233-271 334-375 (404)
194 KOG4571 Activating transcripti 27.5 2.1E+02 0.0045 27.8 6.7 12 162-173 272-283 (294)
195 PLN02551 aspartokinase 27.4 2.6E+02 0.0057 29.2 8.1 36 237-272 364-402 (521)
196 TIGR01297 CDF cation diffusion 27.3 3.3E+02 0.0072 24.8 8.1 55 252-306 193-250 (268)
197 PF00170 bZIP_1: bZIP transcri 27.3 82 0.0018 22.9 3.3 19 169-187 26-44 (64)
198 PF09849 DUF2076: Uncharacteri 26.9 1.5E+02 0.0033 27.9 5.7 18 171-188 57-74 (247)
199 PF14992 TMCO5: TMCO5 family 26.2 88 0.0019 30.1 4.0 28 162-189 144-171 (280)
200 PRK09977 putative Mg(2+) trans 25.8 5.3E+02 0.011 23.7 9.4 63 237-304 142-204 (215)
201 COG1707 ACT domain-containing 25.4 3.2E+02 0.0069 24.7 7.1 36 241-276 4-39 (218)
202 PRK08818 prephenate dehydrogen 25.2 3.9E+02 0.0084 26.6 8.5 49 241-290 297-346 (370)
203 PF14197 Cep57_CLD_2: Centroso 24.9 1.3E+02 0.0027 22.8 3.9 29 161-189 39-67 (69)
204 PRK09509 fieF ferrous iron eff 23.3 3.3E+02 0.0072 25.7 7.4 58 251-308 213-272 (299)
205 PF09006 Surfac_D-trimer: Lung 23.1 1.1E+02 0.0023 21.6 2.9 21 171-191 1-21 (46)
206 PF10393 Matrilin_ccoil: Trime 22.8 1.6E+02 0.0035 20.8 3.8 29 162-190 16-44 (47)
207 TIGR01213 conserved hypothetic 22.8 1.2E+02 0.0026 30.5 4.4 80 226-308 209-303 (388)
208 PRK11191 RNase E inhibitor pro 22.8 3.1E+02 0.0067 23.6 6.4 58 248-308 41-99 (138)
209 PRK02047 hypothetical protein; 22.5 2.4E+02 0.0051 22.3 5.3 65 239-310 16-84 (91)
210 PF05088 Bac_GDH: Bacterial NA 22.5 4.3E+02 0.0094 31.5 9.3 75 238-312 16-109 (1528)
211 PRK00341 hypothetical protein; 22.2 2.1E+02 0.0046 22.7 4.9 49 239-288 17-69 (91)
212 PF04508 Pox_A_type_inc: Viral 22.1 1.2E+02 0.0026 18.3 2.6 17 171-187 3-19 (23)
213 PRK06349 homoserine dehydrogen 22.1 4.7E+02 0.01 26.3 8.6 37 238-274 347-383 (426)
214 TIGR01834 PHA_synth_III_E poly 21.8 1.9E+02 0.0041 28.5 5.4 29 163-191 290-318 (320)
215 PRK10820 DNA-binding transcrip 21.7 1.4E+02 0.003 30.9 4.8 36 241-276 2-37 (520)
216 PRK14647 hypothetical protein; 21.6 3.3E+02 0.0071 23.7 6.5 49 257-308 15-66 (159)
217 PRK08841 aspartate kinase; Val 21.4 3.5E+02 0.0076 27.0 7.5 63 236-308 315-377 (392)
218 KOG2574 mRNA splicing factor P 21.1 1.5E+02 0.0033 30.3 4.7 48 125-190 112-159 (492)
219 KOG1029 Endocytic adaptor prot 21.1 84 0.0018 34.6 3.0 19 171-189 439-457 (1118)
220 KOG3582 Mlx interactors and re 20.9 30 0.00066 37.2 -0.2 58 126-186 789-849 (856)
221 PTZ00324 glutamate dehydrogena 20.9 5.9E+02 0.013 29.0 9.5 63 229-291 217-286 (1002)
222 PRK06635 aspartate kinase; Rev 20.5 3.9E+02 0.0085 26.3 7.6 51 235-285 258-310 (404)
223 COG1591 Holliday junction reso 20.4 4E+02 0.0088 23.0 6.5 52 252-303 9-72 (137)
224 COG4747 ACT domain-containing 20.3 5.4E+02 0.012 22.0 7.1 42 241-283 71-114 (142)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.44 E-value=1.8e-13 Score=98.79 Aligned_cols=52 Identities=35% Similarity=0.610 Sum_probs=48.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCC---cCCCCCccchHHHHHHHHHHHH
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 175 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~---~~~k~dKasiL~~ai~YIk~Lq 175 (317)
+|..|+..||+||++||+.|..|+.+||.. ...|.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478899999999999999999999999994 4578999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.39 E-value=5.8e-13 Score=96.95 Aligned_cols=56 Identities=32% Similarity=0.539 Sum_probs=51.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCccchHHHHHHHHHHHHHHH
Q 036531 123 NQRMTHIAVERNRRKQMNEYLSVLRSLMPDSY-VQRGDQASIIGGAINFVKELEQRL 178 (317)
Q Consensus 123 ~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~-~~k~dKasiL~~ai~YIk~Lq~~v 178 (317)
..+..|+..||+||++||+.|..|+++||..+ ..|.+|++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999942 378999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=2.6e-12 Score=91.65 Aligned_cols=51 Identities=39% Similarity=0.557 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCccchHHHHHHHHHHHHHHHH
Q 036531 129 IAVERNRRKQMNEYLSVLRSLMPDSY-VQRGDQASIIGGAINFVKELEQRLQ 179 (317)
Q Consensus 129 ~~~ER~RR~~mn~~~~~LrslvP~~~-~~k~dKasiL~~ai~YIk~Lq~~v~ 179 (317)
+..||+||++||+.|..|+++||... ..|.+|++||..||+||++|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999642 5789999999999999999998875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.07 E-value=1.4e-09 Score=107.28 Aligned_cols=67 Identities=28% Similarity=0.515 Sum_probs=53.5
Q ss_pred cCCCChHHhh-hhhhhhhHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCccchHHHHHHHHHHHHHHHH
Q 036531 113 KSRKNQEEIE-NQRMTHIAVERNRRKQMNEYLSVLRSLMPDSY--VQRGDQASIIGGAINFVKELEQRLQ 179 (317)
Q Consensus 113 k~~~~~ee~~-~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasiL~~ai~YIk~Lq~~v~ 179 (317)
+......+.+ -+|.+|+++|||||++||++|.+|..|||.+. -.|..|..||..+++||++||+..+
T Consensus 221 ~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 221 KTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred CcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 4443333333 45789999999999999999999999999931 1267799999999999999997666
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.75 E-value=2e-08 Score=89.07 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=59.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCCc-----CCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSY-----VQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~-----~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
+|..|...||+||+.||..+..|+.|||... ..|..||-||.++|+||..|.+++..-+.+...+++.
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~ 134 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKD 134 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999831 2267789999999999999999888888887777655
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.60 E-value=5.6e-07 Score=69.50 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=59.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCH---HHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSG---DDIATAVYQLLGR 309 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~---eeI~~aL~~il~~ 309 (317)
.|+|.|++|||+|.+|..+|-.++++|.++.|+|.++.+.-+|.++-.+|.++.+. +.|+++|..+|.|
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999998888877544 3456666666554
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.51 E-value=2.3e-07 Score=85.81 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=58.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH-HccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 122 ENQRMTHIAVERNRRKQMNEYLSVL-RSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 122 ~~~~~~h~~~ER~RR~~mn~~~~~L-rslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
-++|..-.+.||||=+|+||.|.+| |..++++ .++.-|+.||..||+||..||..++++.+....++
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~~ 183 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAEKGLA 183 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 3457778899999999999999999 5666765 69999999999999999999999999987766664
No 8
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.39 E-value=2.5e-07 Score=86.67 Aligned_cols=60 Identities=22% Similarity=0.454 Sum_probs=51.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHccCCCCc------CCCCCccchHHHHHHHHHHHHHHHHH
Q 036531 121 IENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSY------VQRGDQASIIGGAINFVKELEQRLQS 180 (317)
Q Consensus 121 ~~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~------~~k~dKasiL~~ai~YIk~Lq~~v~~ 180 (317)
...++..|-+.||+||.+||+.|..|+.|||... ..|++||.||+-|++|++.|+.....
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 3445788999999999999999999999999831 25789999999999999999865443
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.36 E-value=1.4e-06 Score=80.71 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=51.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCC-ccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGD-QASIIGGAINFVKELEQRLQSLGARKEIK 188 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~d-KasiL~~ai~YIk~Lq~~v~~L~~~~~~~ 188 (317)
|..|+.-||+||..|++.|..|+.+||.....+.. .++||..|++||+.|+.+.......++.+
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 77899999999999999999999999984223332 47899999999999987665555444443
No 10
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=9.4e-06 Score=62.24 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
..|+|.+.+|||+|.+|.++|..+||+|..|.|+|.++.+.-+|.+.-.+|.++.+ .+-.+.|.+.|
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d-~~~~~~l~~~L 68 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTD-DSLIAYIEKSL 68 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCC-HHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999998777776643 23334444433
No 11
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=1.4e-05 Score=61.73 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=54.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEecCCCCCCC---HHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVT--TADEIVLYSLSVKVEDDCNLTS---GDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvs--t~~~~vl~s~~~Kv~e~~~~~s---~eeI~~aL~~il 307 (317)
.|.|.|.+|||+|.+|.++|..+||+|..|.|+ |.++.+.-+|.+ -.++.++.+ .+.|+++|.+++
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999 999999999999 455555433 234556655554
No 12
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.23 E-value=1e-06 Score=93.59 Aligned_cols=52 Identities=23% Similarity=0.555 Sum_probs=48.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCCCcC---CCCCccchHHHHHHHHHHHHHH
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLMPDSYV---QRGDQASIIGGAINFVKELEQR 177 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~---~k~dKasiL~~ai~YIk~Lq~~ 177 (317)
|..|+.+|||||++||.+|.+|.+|||.. . .|+||..||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~-~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTN-ASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcc-hhcccCchHHHHHHHHHHHHHHHhhh
Confidence 57799999999999999999999999994 4 7999999999999999998874
No 13
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=1.9e-05 Score=60.64 Aligned_cols=50 Identities=26% Similarity=0.201 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecC
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT-ADEIVLYSLSVKVED 289 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst-~~~~vl~s~~~Kv~e 289 (317)
+.|+|.|+++||+|.+|..+|..+||+|++|.|.+ .++.++-+|.+.-.+
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~ 51 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence 46899999999999999999999999999999996 789999999997443
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.17 E-value=3.5e-05 Score=58.31 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=46.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCCCCC
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVEDDCNL 293 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~e~~~~ 293 (317)
.|.|.|+++||+|.+|..+|..+||+|+.|.+.+. ++.++-+|.+.-.++...
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 67899999999999999999999999999999877 689999999985555544
No 15
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.12 E-value=2.8e-06 Score=90.63 Aligned_cols=67 Identities=19% Similarity=0.391 Sum_probs=59.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 122 ENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 122 ~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
+.+|.+||.+|||.|-.||+++..|+.+||.. .-|..|..+|..||+||++|+...+.++.+...++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT-EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCcc-HhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 34689999999999999999999999999985 56899999999999999999988887776666554
No 16
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=8.1e-05 Score=56.71 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=45.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecC
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVED 289 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e 289 (317)
.|+|.++++||+|.+|..+|..+|+.|+.+.+.+.++.++-+|.+.-.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~ 50 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE 50 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence 5889999999999999999999999999999999999999999987544
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=0.00015 Score=54.98 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=54.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT-ADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst-~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|-|.|+++||+|.+|..+|..+||+|+.+.+.+ .+|.++-+|.+.-.++. ..+++.++|++.|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~---~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG---ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc---chHHHHHHHHHhh
Confidence 5778999999999999999999999999999975 57899999999855543 4577888888765
No 18
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=0.00038 Score=51.33 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=52.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|.|.+.+++|+|.+|+.+|.++++.|+++++.+.++.++..|.+...++.. .+. +..+.|.+.|
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~-~~~~~i~~~l 66 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDP-ERQEALRAAL 66 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCH-HHHHHHHHHH
Confidence 5789999999999999999999999999999999888888999998766654 233 3333444443
No 19
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.00035 Score=52.85 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=52.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.|.|.+++++|+|.+|..+|.++++.|+++.+.+.++.++.+|.+.-.++... .. +..++|.+.|+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CH-HHHHHHHHHhc
Confidence 57788999999999999999999999999999988888888998875555444 33 34455666555
No 20
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.61 E-value=6.1e-05 Score=69.49 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=53.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCccchHHHHHHHHHHHHHHHHHHHHhH
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSY--VQRGDQASIIGGAINFVKELEQRLQSLGARK 185 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~ 185 (317)
++..++..||+|=+.+|..|..||.++|... .+|..|+.+|..||.||+.|++-++.-+...
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 4677888899999999999999999999954 4688999999999999999998887765443
No 21
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.53 E-value=0.00018 Score=56.52 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHccCCCCcC-CCCCcc---chHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 137 KQMNEYLSVLRSLMPDSYV-QRGDQA---SIIGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 137 ~~mn~~~~~LrslvP~~~~-~k~dKa---siL~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
++|++.+..|+.|+|.... ...+|+ -+|.++.+||+.|++++..|.+++..+-..
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999998422 233454 489999999999999999999999887643
No 22
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.53 E-value=0.00087 Score=51.19 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
++.|.|.+++|||++..|..+|.++|.+|+.++.++.++.+...+.+.+.++ +.++++.+|.++..+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999999999998888888887622 4567777777665543
No 23
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.51 E-value=7.9e-05 Score=70.83 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=50.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLG 182 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~ 182 (317)
+|..-+.-||||=.-||..|..||+|+|.--.-|..||.||..+.+||.+|+.+..+|-
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 35557778999999999999999999999555688999999999999999997665553
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.27 E-value=0.0049 Score=44.89 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=44.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCC
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDC 291 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~ 291 (317)
.|.|.|++++|+|.+|+.+|.++++.|.++.+.+.++.....|.+.-.++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~ 52 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGR 52 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCC
Confidence 577899999999999999999999999999998887777778888765544
No 25
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.19 E-value=0.005 Score=47.13 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=55.6
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGR 309 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~ 309 (317)
+.|.+.|+++||+..+|-..|-++|..|+.++....++.++..+.+.++. . +.+++.+++..+-.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~---~-~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW---D-AIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc---c-cHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999877777777652 2 567888887776554
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.18 E-value=0.0042 Score=44.67 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=45.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
.|.|.|+++||+|.+|...|-++|+.|.++.+.+.++.....+.+...+. . ..+.+.++|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE--E-DLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG--H-GHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC--C-CHHHHHHHHHcc
Confidence 57889999999999999999999999999999988761112222222111 1 356677777665
No 27
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.18 E-value=0.0037 Score=68.39 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=64.9
Q ss_pred CeEEEEEe--CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCC---HHHHHHHH
Q 036531 229 ADIEVNMV--ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTS---GDDIATAV 303 (317)
Q Consensus 229 ~~VeV~~~--e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s---~eeI~~aL 303 (317)
+.|.+.-. ++...|.|.+.++||+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.++..+.. .++|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 44444432 34579999999999999999999999999999999999999999999998766665543 34567777
Q ss_pred HHHHHHH
Q 036531 304 YQLLGRI 310 (317)
Q Consensus 304 ~~il~~i 310 (317)
.++|..-
T Consensus 882 ~~~L~~~ 888 (895)
T PRK00275 882 CEQLDAR 888 (895)
T ss_pred HHHHhcc
Confidence 7776543
No 28
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.13 E-value=0.0029 Score=69.08 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCC--CHHHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLT--SGDDIATAVYQLL 307 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~--s~eeI~~aL~~il 307 (317)
+....|+|.+.+|||+|.+|.++|.++||+|.+|.|+|.++.+.-+|.+.-.++..+. ..++|+++|..+|
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999866665552 1234555555544
No 29
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.11 E-value=0.0018 Score=49.48 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=42.9
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecC
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVED 289 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e 289 (317)
+.|+|.+.+++|+|.+|..+|-+.++.|.++++... ++.+...|.+++.+
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 688999999999999999999999999999999984 67888899999853
No 30
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.03 E-value=0.01 Score=45.06 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=53.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD------EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~------~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
|.|.|+++||++.+|-+.|.++|+.|.+++..+.+ +.+...+.+.+.++ .+.+++.++|..+-..+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~---~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG---TDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC---CCHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999998876 55556666666543 25788888888766554
No 31
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.95 E-value=0.0011 Score=57.40 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=55.2
Q ss_pred CCChHHhhhhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHH
Q 036531 115 RKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQ 179 (317)
Q Consensus 115 ~~~~ee~~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~ 179 (317)
...-+|...|+..|+..||+|-..+|+.|..||.++|.-...|..|.-.|.-|..||-.|=+-++
T Consensus 69 ~~~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 69 IQSLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 33456788899999999999999999999999999998556678888899999999988865443
No 32
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.93 E-value=0.0067 Score=66.64 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=64.3
Q ss_pred CeEEEEEe--CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCC---HHHHHHHH
Q 036531 229 ADIEVNMV--ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTS---GDDIATAV 303 (317)
Q Consensus 229 ~~VeV~~~--e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s---~eeI~~aL 303 (317)
+.|.+.-. +....|.|.+.++||+|.+|..+|.++|++|.++.|.|.++.++-+|.+.-.++..+.. .++|+++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 34444432 34579999999999999999999999999999999999999999999998766665543 35677777
Q ss_pred HHHHHH
Q 036531 304 YQLLGR 309 (317)
Q Consensus 304 ~~il~~ 309 (317)
.++|..
T Consensus 911 ~~~L~~ 916 (931)
T PRK05092 911 LAALAE 916 (931)
T ss_pred HHHhcC
Confidence 777643
No 33
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.90 E-value=0.0059 Score=47.64 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=56.6
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
+.|.+.|+++||++.+|.+.|-++|++|++++..+.++.+...+.+.+.. ... +.+++.++|..+-.++
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~-~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNL-DFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCC-CHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999988888776667777653 122 5788888888876654
No 34
>PRK00194 hypothetical protein; Validated
Probab=96.90 E-value=0.0073 Score=47.13 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
.+.|.|.|+++||++.+|...|-++|+.|++.+..+.++.+...+.+.... ... +.+++.+.|.++-.++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~l~~~l~~l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKK-DFAELKEELEELGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCC-CHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999988888766666666643 112 4678888887765553
No 35
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.012 Score=44.21 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=48.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
|.|.|+++||++.+|.+.|-++|+.|++.+..+..+.-++.+.+++.-.....+.++++++|..+-..+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l 70 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEF 70 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999886322112333334332221125788888887765543
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.88 E-value=0.0082 Score=65.51 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=61.4
Q ss_pred CeEEEEEe--CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCC--HHHHHHHHH
Q 036531 229 ADIEVNMV--ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTS--GDDIATAVY 304 (317)
Q Consensus 229 ~~VeV~~~--e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s--~eeI~~aL~ 304 (317)
+.|.+.-. ++...|.|.+.++||+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.++..+.. .++|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 45555432 33579999999999999999999999999999999999999999999998666654422 245555555
Q ss_pred HHH
Q 036531 305 QLL 307 (317)
Q Consensus 305 ~il 307 (317)
..|
T Consensus 864 ~~l 866 (869)
T PRK04374 864 ACL 866 (869)
T ss_pred HHh
Confidence 554
No 37
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.012 Score=44.60 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=55.7
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
|.|.+++|||++.++.+.|-++|++|.+.+.++.++.+...+.+.+..+ .+.+++.++|..+..++
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~---~~~~~l~~~l~~l~~~l 67 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS---ADSEALLKDLLFKAHEL 67 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC---CCHHHHHHHHHHHHHHc
Confidence 6789999999999999999999999999998888887767777777654 25788888888877664
No 38
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.80 E-value=0.0073 Score=65.78 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=56.1
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCH--HHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSG--DDIATAVYQL 306 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~--eeI~~aL~~i 306 (317)
...|+|.+.++||+|.+|.++|.++|++|..|.|+|.++.+.-+|.+.-.+|.++... ++|+++|..+
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~ 852 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSN 852 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999987666655321 3344444443
No 39
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.0086 Score=44.56 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=42.1
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCC
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVEDD 290 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~e~ 290 (317)
|+|.+.++||+|.+|+.+|.+.|..|.++++... ++.+...|.+++.+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~ 51 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE 51 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH
Confidence 6888999999999999999999999999998776 467667788887654
No 40
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.60 E-value=0.016 Score=62.57 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=60.5
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.+.+.|.|+|+++||++.+|..+|..+|++|+.+.+.+.+|.++-+|.|.-.++... ..++|+++|.+++.
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~-~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP-DAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc-hHHHHHHHHHHHHc
Confidence 356799999999999999999999999999999999998899999999986555433 35778888887765
No 41
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.54 E-value=0.011 Score=64.34 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=46.2
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEE
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVK 286 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~K 286 (317)
+...|.|.++++||+|.+|..+|..+||+|+.|.|+|.++.++-+|.+.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 4579999999999999999999999999999999999999999999984
No 42
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.54 E-value=0.018 Score=62.61 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=58.8
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEEecCCCCCCC---HHHHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVT-TADEIVLYSLSVKVEDDCNLTS---GDDIATAVYQLLG 308 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvs-t~~~~vl~s~~~Kv~e~~~~~s---~eeI~~aL~~il~ 308 (317)
.+...|.|.++++||+|.+|..+|..+||+|+.|.|. +.++.++-+|.++-.++..... .+.|.++|.++|.
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999998 6789999999999777665533 2346666666654
No 43
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.015 Score=41.98 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=38.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEec
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-----DEIVLYSLSVKVE 288 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-----~~~vl~s~~~Kv~ 288 (317)
|.|.++.+||.|.+|+..|.+.|++|.+.+.... ++.....|.+.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 4578899999999999999999999999987654 3555666777763
No 44
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.45 E-value=0.018 Score=62.16 Aligned_cols=66 Identities=24% Similarity=0.247 Sum_probs=56.0
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
+...|.|.+.++||+|.+|..+|..+|++|+++.|+|.++.++-+|.+.-.++..+. ++ .+.|.+.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~--~~-~~~l~~~ 771 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA--DA-RAAVEQA 771 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc--hH-HHHHHHH
Confidence 357999999999999999999999999999999999999999999999877776663 33 4445444
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.41 E-value=0.02 Score=62.27 Aligned_cols=57 Identities=23% Similarity=0.201 Sum_probs=51.7
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCC
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLT 294 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~ 294 (317)
....|.|.|.++||+|.+|.++|..+|++|.++.++|.++.+.-.|.+....+..+.
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~ 834 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLT 834 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCC
Confidence 357999999999999999999999999999999999999999999999877666553
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.15 E-value=0.044 Score=59.85 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=60.2
Q ss_pred cCeEEEEE--eCCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCHH---HHHH
Q 036531 228 IADIEVNM--VESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT-ADEIVLYSLSVKVEDDCNLTSGD---DIAT 301 (317)
Q Consensus 228 ~~~VeV~~--~e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst-~~~~vl~s~~~Kv~e~~~~~s~e---eI~~ 301 (317)
.+.|.+.- ..+...|.|.|+++||+|.+|..+|..+||+|+.|.|.+ .+|.++-+|.|.-.++..+ +.+ .|++
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~-~~~~~~~l~~ 742 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-EFDRRRQLEQ 742 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCC-CHHHHHHHHH
Confidence 34455432 235579999999999999999999999999999999976 7899999999986666555 332 3455
Q ss_pred HHHHHH
Q 036531 302 AVYQLL 307 (317)
Q Consensus 302 aL~~il 307 (317)
+|.++|
T Consensus 743 ~L~~aL 748 (854)
T PRK01759 743 ALTKAL 748 (854)
T ss_pred HHHHHH
Confidence 555544
No 47
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.11 E-value=0.024 Score=42.17 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=39.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEec
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVE 288 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~ 288 (317)
.|.|.+.+++|+|.+|+..|.++++.|...+.... ++.....|.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~ 50 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS 50 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC
Confidence 57889999999999999999999999999987654 4555667777764
No 48
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.09 E-value=0.049 Score=59.66 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=59.8
Q ss_pred CeEEEEE--eCCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCCCCCCCH---HHHHHH
Q 036531 229 ADIEVNM--VESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVEDDCNLTSG---DDIATA 302 (317)
Q Consensus 229 ~~VeV~~--~e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~e~~~~~s~---eeI~~a 302 (317)
+-|.+.- ..+...|.|.|+++||+|.+|..+|..+||+|+.+.|.|. +|.++-+|.+.-.++... +. ++|+++
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~-~~~~~~~I~~~ 767 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-SQDRHQVIRKA 767 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC-CHHHHHHHHHH
Confidence 4444433 2356899999999999999999999999999999998766 569999999986666554 33 235566
Q ss_pred HHHHH
Q 036531 303 VYQLL 307 (317)
Q Consensus 303 L~~il 307 (317)
|.++|
T Consensus 768 L~~aL 772 (884)
T PRK05007 768 LEQAL 772 (884)
T ss_pred HHHHH
Confidence 65555
No 49
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.00 E-value=0.052 Score=59.55 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=56.4
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEE-EeeCCeEEEEEEEEecCCCCCCC----HHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNV-TTADEIVLYSLSVKVEDDCNLTS----GDDIATAVYQLL 307 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anv-st~~~~vl~s~~~Kv~e~~~~~s----~eeI~~aL~~il 307 (317)
+...|.|.|+++||+|.+|+.+|..+||+|+.|.| ++.+|.++-+|.|.-.++..... .+.|.++|.++|
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999998 55678999999998666654322 244666666665
No 50
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.035 Score=59.59 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=63.9
Q ss_pred CeEEEEEe--CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 229 ADIEVNMV--ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 229 ~~VeV~~~--e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
|.|.+.-. .....|+|.+.+|||+|..|-.+|..++|+|+++.|+|+|.++.-+|.+...++.++. .++.+.+.+.
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~--~~~~q~l~~~ 856 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN--AELRQSLLQR 856 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCC--HHHHHHHHHH
Confidence 56666543 2346999999999999999999999999999999999999999999999988877662 5666666665
Q ss_pred H
Q 036531 307 L 307 (317)
Q Consensus 307 l 307 (317)
+
T Consensus 857 l 857 (867)
T COG2844 857 L 857 (867)
T ss_pred H
Confidence 3
No 51
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.93 E-value=0.065 Score=59.01 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=59.8
Q ss_pred CeEEEEEe--CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCC---HHHHHHH
Q 036531 229 ADIEVNMV--ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT-ADEIVLYSLSVKVEDDCNLTS---GDDIATA 302 (317)
Q Consensus 229 ~~VeV~~~--e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst-~~~~vl~s~~~Kv~e~~~~~s---~eeI~~a 302 (317)
+.|.+... .+...|.|.|++++|+|.+|..+|..+|++|+.+.|.+ .+++++-+|.+.-.++..... .+.|.++
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKA 799 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 44555433 35689999999999999999999999999999999977 688988899988665543222 3445556
Q ss_pred HHHHH
Q 036531 303 VYQLL 307 (317)
Q Consensus 303 L~~il 307 (317)
|.+++
T Consensus 800 L~~~l 804 (931)
T PRK05092 800 IEDAL 804 (931)
T ss_pred HHHHH
Confidence 65555
No 52
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.89 E-value=0.056 Score=59.07 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEE-EeeCCeEEEEEEEEecCCCCCCC---HHHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNV-TTADEIVLYSLSVKVEDDCNLTS---GDDIATAVYQLL 307 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anv-st~~~~vl~s~~~Kv~e~~~~~s---~eeI~~aL~~il 307 (317)
.+...|.|.|+++||+|.+|..+|..+||+|+.|.| ++.+|+++-+|.|.-.++. ... .++|+++|.++|
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999 4568999999998855444 211 344555555544
No 53
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.68 E-value=0.035 Score=56.41 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=47.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCC----CccchHHHHHHHHHHHHHHHHHH
Q 036531 123 NQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRG----DQASIIGGAINFVKELEQRLQSL 181 (317)
Q Consensus 123 ~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~----dKasiL~~ai~YIk~Lq~~v~~L 181 (317)
.+|+.+++.||-|=+.||+.|.+|-.++-- --|. .|.-||..|+.-|-.|||+|.+-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCql--HlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQL--HLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHH--hhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999999876533 1223 45679999999999999999864
No 54
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.56 E-value=0.079 Score=58.01 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=55.4
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT-ADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst-~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
+...|.|.|+++||+|.+|..+|..+||+|+.|.|.+ .+|.++-+|.|.-.++......+.|.++|.++|
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999976 688999999997555532112344555555554
No 55
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.44 E-value=0.043 Score=41.33 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=37.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEec
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVE 288 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~ 288 (317)
.|+|.|.+++|+|.+|+.++.+++..|..+++.+. +. ..|.+++.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~ 46 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI 46 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec
Confidence 57899999999999999999999999999999765 44 33555554
No 56
>PRK04435 hypothetical protein; Provisional
Probab=95.43 E-value=0.086 Score=45.56 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=46.0
Q ss_pred EeCCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEec
Q 036531 235 MVESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVE 288 (317)
Q Consensus 235 ~~e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~ 288 (317)
..|..+.|.|.+.++||+|.+|+..|.+.++.|+..+.+.. ++.+..+|++.+.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs 119 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS 119 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC
Confidence 34678999999999999999999999999999999987653 5767777888774
No 57
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.35 E-value=0.069 Score=37.03 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=38.7
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEec
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVE 288 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~ 288 (317)
|+|.+.+++|.+.+|+..|.+++++|.+..+...+ +.....|.+++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 46788999999999999999999999999887665 555566666654
No 58
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.08 E-value=0.072 Score=39.00 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=38.7
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEe
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-D-EIVLYSLSVKV 287 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~-~~vl~s~~~Kv 287 (317)
++|+|.+.+++|+|.+|+..|.+.++.|...+.... + +.....+.+.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 368999999999999999999999999999987654 3 55555555554
No 59
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.04 E-value=0.15 Score=33.41 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=31.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD 276 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~ 276 (317)
|.|.|+.++|.+.+|+..|...++.|........+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788899999999999999999999999987654
No 60
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.99 E-value=0.13 Score=36.82 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=38.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKV 287 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv 287 (317)
.|.|.+.+++|.|.+|+..|.+.++.|..++.... ++.....|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46778899999999999999999999999988764 456666677665
No 61
>PRK08577 hypothetical protein; Provisional
Probab=94.68 E-value=0.28 Score=41.51 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=48.5
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+.+.|.|.+.+++|+|.+|+..|.++++++.+.+..+. ++.....|.+.+.+.. ...+++.+.|.+
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~--~~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD--IDLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch--hhHHHHHHHHHc
Confidence 36889999999999999999999999999999988765 3555556777775431 123455544443
No 62
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.48 E-value=0.26 Score=36.95 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=52.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
.|.|.|+++.|+-.+|.+.+-+.||.|....+++.|.-.+..|-+......-.+.=+-+|++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 578999999999999999999999999999999999876667766654433233456777777653
No 63
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.40 E-value=0.44 Score=35.65 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=38.0
Q ss_pred EEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecC
Q 036531 243 KIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVED 289 (317)
Q Consensus 243 kI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e 289 (317)
.+..+++||.|.+++..|..+|+.+++.......+ .--|.|.+.++.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 34457899999999999999999999998776644 555778888764
No 64
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.35 E-value=0.39 Score=45.97 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=53.2
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRIQ 311 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i~ 311 (317)
.+.|.|.|+++||+..+|-+.|-+++++|.+++..+....-++.+.+.+.-.... +.++++++|..+-..+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~-~~~~L~~~L~~l~~~l~ 78 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL-DEDALRAGFAPIAARFG 78 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC-CHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999998753322233344444322223 57889988888766553
No 65
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.33 E-value=0.32 Score=36.11 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=41.8
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA---DEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~---~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+.|.-+++||.|.+|+..|.++|..|++...... .+.-...+.+.++... ..++|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~---~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS---KENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch---HHHHHHHHHhC
Confidence 4567789999999999999999999999987654 2333445555553221 14555555543
No 66
>PRK07334 threonine dehydratase; Provisional
Probab=94.25 E-value=0.19 Score=50.07 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=44.3
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEecC
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-----DEIVLYSLSVKVED 289 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-----~~~vl~s~~~Kv~e 289 (317)
.+.|+|.+.+++|+|.+|+..|.+.++.|.++++.+. ++.+...|.++|.+
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 3899999999999999999999999999999998764 56777778888754
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.08 E-value=0.48 Score=45.37 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=54.7
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRIQ 311 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i~ 311 (317)
.++.|.|.|++|||+..+|-+.|-++|+.|++++.++ .++.+...+.+.++ .... +.+++.++|..+-..+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~~-~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLIF-NLETLRADFAALAEEFE 78 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCCC-CHHHHHHHHHHHHHHhC
Confidence 4688999999999999999999999999999999999 77754444444441 1112 46788888877766543
No 68
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.05 E-value=0.43 Score=34.26 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=34.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEE
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSL 283 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~ 283 (317)
.|.|.+.+++|.|.+++..|.+.++.|.+.+....+ +.....|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i 45 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM 45 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEE
Confidence 477889999999999999999999999998887653 4433333
No 69
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=94.01 E-value=0.073 Score=50.19 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=48.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHccCCC-CcCCCCCccchHHHHHHHHHHHHHH
Q 036531 122 ENQRMTHIAVERNRRKQMNEYLSVLRSLMPD-SYVQRGDQASIIGGAINFVKELEQR 177 (317)
Q Consensus 122 ~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~-~~~~k~dKasiL~~ai~YIk~Lq~~ 177 (317)
...|..-+..||+|=-.+|+.|..||.++|. ....|+.|+..|.-|-+||..|++-
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 3457788899999999999999999999994 3357889999999999999998853
No 70
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.67 E-value=0.89 Score=34.53 Aligned_cols=63 Identities=11% Similarity=0.263 Sum_probs=45.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
.|.+..++++|.|.+|+..|.++|+.+++....... +...|.|.+.++.. . ..+++.++|..+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~-~~~~~~~~l~~l 66 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--I-EDPNVAEALEEL 66 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--C-CCHHHHHHHHHH
Confidence 455566789999999999999999999999877653 45568888887643 1 234555555433
No 71
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=93.59 E-value=0.61 Score=33.10 Aligned_cols=44 Identities=25% Similarity=0.226 Sum_probs=37.0
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEE
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSV 285 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~ 285 (317)
+.|...+++|.|.+|+..|.+.++.|.+..+.... +.....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56788999999999999999999999999987754 565556655
No 72
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.34 E-value=0.54 Score=45.14 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=50.8
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVT--TADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvs--t~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
++.|.|.|+++||+..+|-..|-++|+.|++++-. +..+.++-.+.+........ +.++++++|..+-.++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~-~~~~l~~~l~~l~~~l 81 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA-SVDTFRQEFQPVAEKF 81 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999985 33332222222221111223 6789999888876665
No 73
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.25 E-value=0.53 Score=33.51 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=39.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
|.|.-+++||.|.+++..|.+.|+.|.+....... +...+ .+.+++ .+++.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v--~~~ve~------~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALL--IFRTED------IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEE--EEEeCC------HHHHHHHHHH
Confidence 56677899999999999999999999887765443 44443 444432 4555555543
No 74
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.13 E-value=0.048 Score=56.07 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCC--cCCCCCccchHHHHHHHHH
Q 036531 130 AVERNRRKQMNEYLSVLRSLMPDS--YVQRGDQASIIGGAINFVK 172 (317)
Q Consensus 130 ~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasiL~~ai~YIk 172 (317)
---+|-|+++|.-|..|.+|+|.. .++|.||.|||.-++.|++
T Consensus 31 NPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 31 NPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred CcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 345777899999999999999983 3679999999999999985
No 75
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.95 E-value=0.77 Score=33.48 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=30.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA 275 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~ 275 (317)
.+.|.++++||.|.+|+..|.++++.|..+.....
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 56788899999999999999999999998876554
No 76
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.90 E-value=0.82 Score=43.70 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=51.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHH-HHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQ-LLGRI 310 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~-il~~i 310 (317)
.|.|.|+++||+..+|-..|-++|+.|++++-+..+ +.++-.+.+.+.+. . .+.+++++++.. +-..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~-~~~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-R-LEESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-C-CCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999988753 55444444444321 2 357899988888 55443
No 77
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.70 E-value=0.78 Score=32.67 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=40.4
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
|.|.+.+++|.|.+|...|.++++.|........ ++..... +.+++. ..+++.++|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~----~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP----IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC----CCHHHHHHHHc
Confidence 5778899999999999999999999999887652 3444333 444332 23455554443
No 78
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.61 E-value=1.5 Score=32.01 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=42.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
.|.|..+++||.|.+++..|.+.++.|.+...... ++.....|.+... ..+++.++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~------~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM------NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC------CHHHHHHHHHH
Confidence 56778899999999999999999999998865443 3455566665542 23456655543
No 79
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=92.58 E-value=1.4 Score=32.20 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=36.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKV 287 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv 287 (317)
.|.|..+++||.|.+|++.|.+.|+.|.+.-+...++. ..+.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 46677899999999999999999999999987666553 4555555
No 80
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.05 E-value=0.78 Score=33.89 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred EEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 243 KIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 243 kI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
.|.-+.+||.|.++++.|.. +.+|+..+....+ +.....+.+++.+.. ..++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRE---DLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 46668999999999999999 9999998887643 333345555654432 24566665544
No 81
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.03 E-value=0.66 Score=32.55 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=36.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEE
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVK 286 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~K 286 (317)
|.|...++||.|.++...|-+.++.|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35678899999999999999999999888877655 6665555554
No 82
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.96 E-value=1.1 Score=33.91 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=38.6
Q ss_pred EEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecC
Q 036531 243 KIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVED 289 (317)
Q Consensus 243 kI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e 289 (317)
-+..+++||.|.+++..+...|+.+.+...-...+ ..-|.|.+.++.
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 34447899999999999999999999999887654 445888888864
No 83
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.94 E-value=1.2 Score=35.47 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=46.1
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
..|-+..+++||.|.+++..|...|+.+.+...-...+ .--|.|-+.++.. . -+.++++|.++
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~--~--~~~~~~~l~~L 78 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK--S--APALDPIIKSL 78 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC--C--CHHHHHHHHHH
Confidence 45555568899999999999999999999999887643 3457888887643 1 14555555444
No 84
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.87 E-value=0.82 Score=41.30 Aligned_cols=72 Identities=10% Similarity=0.157 Sum_probs=57.5
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC----C--eEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHhh
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD----E--IVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRIQED 313 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~----~--~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i~~~ 313 (317)
+.|.|...++||++.+|-+.|-++|+.|.+.+.-+.+ + .+...+.+.+..++ ..++++.+|..+-..+.-+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~---~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ---DAANIEQAFKALCTELNAQ 172 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC---CHHHHHHHHHHHHHHhCce
Confidence 6888999999999999999999999999999987764 2 44456666666664 4689999998888777654
Q ss_pred h
Q 036531 314 A 314 (317)
Q Consensus 314 ~ 314 (317)
.
T Consensus 173 ~ 173 (190)
T PRK11589 173 G 173 (190)
T ss_pred E
Confidence 3
No 85
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=1.6 Score=47.36 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=62.8
Q ss_pred CeEEEEEeCCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 229 ADIEVNMVESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVT-TADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 229 ~~VeV~~~e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvs-t~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
..+.++...+...|.|.|+.+|.++..++.++...|++|+.+.|- +.+|+++-+|.|.-.++... ..+........++
T Consensus 674 v~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~-~~dr~~~~~~~l~ 752 (867)
T COG2844 674 VLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPV-EEDRRAALRGELI 752 (867)
T ss_pred eeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCcc-chhHHHHHHHHHH
Confidence 344444456678999999999999999999999999999999995 56889999998886666544 3444444455555
Q ss_pred HHHHh
Q 036531 308 GRIQE 312 (317)
Q Consensus 308 ~~i~~ 312 (317)
.-|+.
T Consensus 753 ~~l~s 757 (867)
T COG2844 753 EALLS 757 (867)
T ss_pred HHHhc
Confidence 55544
No 86
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=90.66 E-value=1.1 Score=39.48 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=49.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.|.|..+++||.|.+|...|...|+.|.+..+...+ +....+|++...+ . .+++|.+-|++++.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~---~-~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE---Q-VIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH---H-HHHHHHHHHhcccc
Confidence 577888999999999999999999999999987654 4555566655321 1 36777777777665
No 87
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=90.41 E-value=1.5 Score=39.23 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=52.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRIQE 312 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i~~ 312 (317)
.|.|...++||+|.+|...|-..|+.|.+.++....+.-+.-+.+-+..+... .++|.+.|++++.-+..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~--ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRT--IEQLTKQLYKLVNILKV 73 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHH--HHHHHHHHHHHhHhhEE
Confidence 57888899999999999999999999999999763322222344444444333 68999999998876643
No 88
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=90.40 E-value=1.1 Score=39.28 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=49.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.|.|...++||.|.+|...|...|+.|.+..+...+ +....+|++.. +. . .++.|.+.|++++.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~-~-~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DD-K-VLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CH-H-HHHHHHHHHhcCcc
Confidence 577888999999999999999999999999998765 45556666653 21 2 36778877777665
No 89
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=89.92 E-value=1.4 Score=34.03 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=48.5
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
..|.|...++||.|.+|+..+..-|+.|-+.++... ++..-.+|.+ .++ . ..+.|.+-|.+++.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~~~--~-~i~ql~kQL~KL~d 69 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--ASE--R-PIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--CCC--c-hHHHHHHHHhcCcC
Confidence 357788889999999999999999999999999874 4444455555 322 2 36888888877654
No 90
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=89.64 E-value=1 Score=40.62 Aligned_cols=66 Identities=9% Similarity=-0.058 Sum_probs=50.5
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.++.|.+.+++|||+...|-+.|-++|..|+.++.+..++.+--.+.+.... . ..+++..+|..+-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~---~-~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW---N-AITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh---h-HHHHHHHHHHhhh
Confidence 5688999999999999999999999999999999999988544344443221 1 4566666665544
No 91
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=89.38 E-value=0.39 Score=34.82 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=35.9
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKV 287 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv 287 (317)
|-+.+.++||+|.+|+..|.+.++.|...+....++..+..|.+.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 4467889999999999999999999988776555566555555554
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=89.28 E-value=1.3 Score=34.23 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=45.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
..|.|...++||.|.+|...+..-|+.|-+.++...+ +..-.++.+.- ++ . .++.|.+-|++++
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-~~--~-~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-TE--N-EATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-CH--H-HHHHHHHHHhCCc
Confidence 3578888999999999999999999999999988654 44445555542 11 1 2456665555543
No 93
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=89.11 E-value=1.3 Score=34.99 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=48.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.|.+...++||.|.+|...|-..|+.|-+.++.... +..-.+|.+.+.++ . ..++|.+-|++++.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~--~-~ieqI~kQL~Klid 70 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD--T-SLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH--H-HHHHHHHHHhCCcc
Confidence 577888999999999999999999999999887654 44445666543332 2 35777777776654
No 94
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=89.04 E-value=1.2 Score=48.04 Aligned_cols=51 Identities=8% Similarity=0.227 Sum_probs=44.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCC
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDD 290 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~ 290 (317)
+.|.|.+.+++|+|.+|..+|-+.++.|+++++.+. ++.+...|.++|.+-
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~ 719 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL 719 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH
Confidence 588999999999999999999999999999999765 467667788888654
No 95
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=89.00 E-value=2.7 Score=48.82 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=59.9
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee---CC--eEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA---DE--IVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~---~~--~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
+.+.++|....++..|.++|-.|++|||.|+.-.--.+ ++ ..+|.|.+....+... ..+++++.+.+++..|
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~-~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDAL-DLDDIRERFEEAFEAV 564 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccc-cHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998865433 22 5678999998777654 6789999999998877
No 96
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=88.83 E-value=0.89 Score=33.58 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
++||.|.+|+..+.--|+.|-+.++.. .++..-.++.+.- .. . .++.|.+.|.+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~-~-~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD-R-EIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C-C-HHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc-h-hHHHHHHHHhccC
Confidence 479999999999999999999999988 4555555555553 22 2 3677777666543
No 97
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.45 E-value=4.7 Score=30.73 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=37.1
Q ss_pred EeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecC
Q 036531 245 RSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVED 289 (317)
Q Consensus 245 ~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e 289 (317)
..+++||.|.+++..++..|+.+.+...-... ..--|.|-+.++.
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 34678999999999999999999999988763 3445888888863
No 98
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.12 E-value=4.2 Score=33.78 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=39.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecC
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVED 289 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e 289 (317)
..|-+..+++||.|.++|..|...|+.+.+...-...+ .--|.|.+.++.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 34444557899999999999999999999999887643 334788888763
No 99
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=86.88 E-value=1.9 Score=46.37 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=43.6
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecC
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVED 289 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e 289 (317)
+.|+|.+.+++|+|.+|..+|-+.++.|.++++.+.+ +++...|.++|.+
T Consensus 627 v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 627 AEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 5899999999999999999999999999999987765 5666778888854
No 100
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=86.88 E-value=1.6 Score=34.91 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=53.4
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
.+.|.|.-.+|+|+...|..+|-++|+.|++.+=+..++++-..+.+.. .....+...+++.|.....++
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~--~~~~~d~~~lr~~l~~~~~~l 72 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI--SKEVVDFAALRDELAAEGKKL 72 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC--ChHhccHHHHHHHHHHHHHhc
Confidence 3688999999999999999999999999999998888986433333333 322335677777777776655
No 101
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.82 E-value=1.1 Score=47.62 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=40.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCC--CcCCCCCccchHHHHHHHHHH
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLMPD--SYVQRGDQASIIGGAINFVKE 173 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~LrslvP~--~~~~k~dKasiL~~ai~YIk~ 173 (317)
|.+-.-+-|-||.|-|+-|.+|..+||- +.....|||+|+.-||.|++-
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 3344456799999999999999999985 234578999999999999863
No 102
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=86.28 E-value=2.1 Score=45.81 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=44.5
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCC
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVEDD 290 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~e~ 290 (317)
+.|+|.+.+++|+|.+|+.+|-+.+..|.++++... ++++...|.++|.+-
T Consensus 611 v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 662 (683)
T TIGR00691 611 VDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY 662 (683)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH
Confidence 589999999999999999999999999999999876 467667788888543
No 103
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.03 E-value=5 Score=30.99 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=40.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
..+.|.-+.+||.|.++++.|- +.+|......... +.....+.++++++. ...+++.++|.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~--~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGA--EELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcH--HHHHHHHHHHHH
Confidence 4677888999999999999998 6666666655432 444456666765511 124555555544
No 104
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=84.10 E-value=6.6 Score=37.55 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=50.5
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGR 309 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~ 309 (317)
..+.+.|.|+.++|+...|-..|-+.|..|++++--+.. ++++ ..++...+..-.+.+.+.+++..+...
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF--mR~~f~~~~~~~~~~~l~~~f~~~a~~ 77 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF--MRVEFEGEGGPLDREALRAAFAPLAEE 77 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE--EEEEEecCCCcccHHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999987432 3333 333333333223677788777775543
No 105
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=84.01 E-value=0.94 Score=45.47 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCC--cCCCCCccchHHHHHHHHHHH
Q 036531 130 AVERNRRKQMNEYLSVLRSLMPDS--YVQRGDQASIIGGAINFVKEL 174 (317)
Q Consensus 130 ~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasiL~~ai~YIk~L 174 (317)
-.-|.||++-|--|..|..++|-+ -....||++|+.-++.|||.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 346899999999999999999973 134689999999999999753
No 106
>PRK08198 threonine dehydratase; Provisional
Probab=83.92 E-value=5.4 Score=39.60 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=41.0
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEe
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-----DEIVLYSLSVKV 287 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-----~~~vl~s~~~Kv 287 (317)
+..+.+.|.-+++||.|.+|++.|-+.|..|+.++.... .+.+...+.+++
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~ 380 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET 380 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe
Confidence 445788999999999999999999999999998887642 345556666665
No 107
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=83.82 E-value=1.9 Score=40.72 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCCC-cCCCCCccchHHHHHHHHHHHHHHHH
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLMPDS-YVQRGDQASIIGGAINFVKELEQRLQ 179 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasiL~~ai~YIk~Lq~~v~ 179 (317)
|..-+..||+|=..||..|..||..||.. ..+|..|-..|..|-.||--|-..+.
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 56778899999999999999999999982 13466777889999999988876554
No 108
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=83.41 E-value=3.3 Score=30.03 Aligned_cols=45 Identities=27% Similarity=0.284 Sum_probs=35.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEE
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVK 286 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~K 286 (317)
+-|...+++|.+.++.+.|.+.|+.|.+..+.. .++.....|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 346778999999999999999999998887655 346665555554
No 109
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=82.06 E-value=5.3 Score=32.39 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=48.4
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
+...|.|...++||+|.+|.-.|-.-|..|-+.++...+ +..-.++.+. ++ . .+++|.+-|.+++.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~~--~-~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DD--Q-RLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--Cc--h-HHHHHHHHHhCCcC
Confidence 346788899999999999999999999988888887654 4444455543 32 1 36777777776654
No 110
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=81.52 E-value=7.9 Score=38.02 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=46.6
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-----DEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-----~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+..+.|.|.-+++||.|.++++.+-+.+..|+++..... .+.+...|.++..+. . ..++|.++|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~--~-~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK--E-HLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH--H-HHHHHHHHHHH
Confidence 455788999999999999999999999999999876521 245556666665421 1 23455555543
No 111
>PRK06382 threonine dehydratase; Provisional
Probab=81.23 E-value=6.7 Score=39.13 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=46.4
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEE----ee-CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVT----TA-DEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvs----t~-~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+..+.|.|.-+++||.|.+|++.|.+++++|+++... .. .+.....|.++..+.. ..++|.+.|.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~---~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQD---HLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 3457888888999999999999999999999988764 22 3455666777654211 13455555543
No 112
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.89 E-value=12 Score=26.47 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=37.7
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|.|.+. ..++.+.+|+++|.+.++.|.-...+..+ ..+++-+.+. ..++..++||+.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~----~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDED----DATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH----HHHHHHHHHHHHH
Confidence 4556653 46899999999999999999777654433 2333333322 2355566666554
No 113
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=79.79 E-value=11 Score=32.62 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=48.5
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEEecCCCCCCCHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVT-TADEIVLYSLSVKVEDDCNLTSGDDIATAVY 304 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvs-t~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~ 304 (317)
..+.+.+.-.+|-|.|.++++++-..++.|++.+=+ ..+|+.-.++++... +--.++++|..+|.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~ 136 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLR 136 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHh
Confidence 346788888999999999999999999999999876 468887777777753 11113455554444
No 114
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=78.47 E-value=2.3 Score=37.33 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHH
Q 036531 131 VERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELE 175 (317)
Q Consensus 131 ~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq 175 (317)
.||.|-+++++.+.-|+.|+|.+...++.+.--|.-+.+||..|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 699999999999999999999965555544444555666665554
No 115
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=77.48 E-value=13 Score=40.07 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=55.6
Q ss_pred eCCEEEEEEEe-CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 236 VESHANLKIRS-KRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 236 ~e~~~~IkI~c-~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.+.+..+.|.. ++++|.|.++..+|--+++.|.++++.+ +|..+..|.|...-+..- .+..+.+.+...+
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~ 613 (693)
T PRK00227 543 VEEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDF-DPQEFLQAYKSGV 613 (693)
T ss_pred cccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCC-ChHHHHHHHHHhh
Confidence 34445666665 8999999999999999999999999999 888888898887655544 5677777776654
No 116
>PRK11899 prephenate dehydratase; Provisional
Probab=77.13 E-value=20 Score=34.30 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=47.9
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
..|-+..+++||.|.++|..|-..|+.+....+-... ...-|.|-+.++... .-..++++|.++
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~---~d~~v~~aL~~l 259 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP---EDRNVALALEEL 259 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC---CCHHHHHHHHHH
Confidence 3444445789999999999999999999999998774 455689999987642 224566665554
No 117
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=76.57 E-value=2.3 Score=45.34 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=52.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHccCCCCc---CCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 123 NQRMTHIAVERNRRKQMNEYLSVLRSLMPDSY---VQRGDQASIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 123 ~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~---~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
+++++|+.+|.+||.+++-.|..|.+++-+.. ..|+.+..-+...+.||..++++...+.++-..++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr 719 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLR 719 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhh
Confidence 45799999999999999999999999886631 23566667789999999888877766665544444
No 118
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.79 E-value=21 Score=25.27 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=36.1
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
.|.|... .+++.+.+++++|.+.+++|.-...+..+ .++++-+.+. ..++..+.||+.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~----~~~~a~~~lh~~ 63 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK----DAVKALNIIHTN 63 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH----HHHHHHHHHHHH
Confidence 3445543 46899999999999999999777655433 2344444322 234445555554
No 119
>PRK08526 threonine dehydratase; Provisional
Probab=75.68 E-value=13 Score=37.25 Aligned_cols=65 Identities=12% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEEecCCCCCCCHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-----EIVLYSLSVKVEDDCNLTSGDDIATAVY 304 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-----~~vl~s~~~Kv~e~~~~~s~eeI~~aL~ 304 (317)
+..+.+.|.-+++||.|.+++..+-+.+.+|+++...... +.+...+.+++.+.. ..++|.++|.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~l~ 393 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE---HQEEIRKILT 393 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH---HHHHHHHHHH
Confidence 4467889999999999999999999999999999886532 235556666665321 2344555443
No 120
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=74.55 E-value=14 Score=34.79 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=31.9
Q ss_pred hhhhhH-HHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 125 RMTHIA-VERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 125 ~~~h~~-~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
|.+|.. -|+--|+|++.+..+=- .+..|-.-..+-=.-|++|.++.+.|..+.+.++..
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQt--------aRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQT--------ARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466654 44667777777765431 222233333333344566776666666666655543
No 121
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=72.82 E-value=19 Score=31.72 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=40.8
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEec
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA---DEIVLYSLSVKVE 288 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~---~~~vl~s~~~Kv~ 288 (317)
+.+-|..+++||+|+++++=|-+.|..|++.--+.. ++++-.-+.++++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 567788899999999999999999999998887765 6776666676664
No 122
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.64 E-value=32 Score=26.46 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=42.5
Q ss_pred EEEEEe---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 036531 241 NLKIRS---KRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRIQEDA 314 (317)
Q Consensus 241 ~IkI~c---~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i~~~~ 314 (317)
.|.|.. ...+|.+.+|++.|.+.|+.|-.... ..+ -.+|.++-.+. .+.+.|...|+++...++.-.
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~--sISftV~~sd~---~~~~~~~~~l~~~~~~~~~~~ 72 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEV--SISLTLDPSKL---WSRELIQQELDHVVEELEKDA 72 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCC--EEEEEEEhhhh---hhhhhHHHHHHHHHHHHHHcC
Confidence 455554 35689999999999999999988854 222 24555553222 123455557777766666543
No 123
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=72.39 E-value=28 Score=24.99 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=35.5
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|.|... ..+|.+.+++.+|.+.++.|. .+++.+. .+++-+++. ..++..++||+.+
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~Se~----~is~~v~~~----~~~~av~~Lh~~f 62 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTADSHT----TISCLVSED----DVKEAVNALHEAF 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEcCcc----EEEEEEcHH----HHHHHHHHHHHHh
Confidence 3455553 578999999999999999996 3333222 344444322 2455666666654
No 124
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=70.81 E-value=30 Score=23.52 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=26.9
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEe
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTT 274 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst 274 (317)
.|.|.+. ..++.+.++++.|.+.++.|.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4566544 567899999999999999998887644
No 125
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.31 E-value=34 Score=24.00 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=36.8
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|.|.+. +.++.+.+++.+|.+.++.|.-...+..+. -.+|.+. +. ..++..++||+.+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~--~isf~v~--~~----d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEI--SIMIGVH--NE----DADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccc--EEEEEEe--HH----HHHHHHHHHHHHH
Confidence 4555553 578999999999999999997776544222 2334433 21 2345566666554
No 126
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=65.11 E-value=19 Score=38.78 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=43.1
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecC
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVED 289 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~e 289 (317)
.+.|.|...+++|+|.+|+++|-+.+..|++++..+. ++.+...|.++|.+
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 3688888999999999999999999999999999886 45555677777754
No 127
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.94 E-value=47 Score=23.18 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=37.2
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|.|.+. +.++.+.+++++|.+.++.|.-.+.+..+. -.+|.+.- . ..++..+.||+.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~--~isf~i~~--~----~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEY--NISFVVAE--D----DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeH--H----HHHHHHHHHHHHh
Confidence 4555553 467999999999999999997766544332 23344442 1 2455666666654
No 128
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.77 E-value=30 Score=25.03 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
+.+|.+.+++.+|.+.++.|.-....+.+.. +++-+++. ..+...++||+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~s----is~~v~~~----~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVN----ISLIVNDS----EAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccce----EEEEEeHH----HHHHHHHHHHHHH
Confidence 4578999999999999999988777666543 33333322 2355566666544
No 129
>PRK11898 prephenate dehydratase; Provisional
Probab=63.19 E-value=47 Score=31.65 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=45.0
Q ss_pred EEEEEEeCC-CCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 240 ANLKIRSKR-RPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 240 ~~IkI~c~~-rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
..|-+..++ +||.|.++|..|...|+.+++.......+ .--|.|-+.++.. . .-..++++|.++
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~--~-~~~~~~~al~~L 262 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH--I-DDVLVAEALKEL 262 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc--C-CCHHHHHHHHHH
Confidence 344455555 59999999999999999999999987643 3447888887643 2 223555555444
No 130
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=63.17 E-value=64 Score=30.06 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=31.9
Q ss_pred CEEEEEEEeCCCCC--hHHHHHHHHHhCCceEEEEEEEee
Q 036531 238 SHANLKIRSKRRPK--QLLKLVSGLQSMRLTILHFNVTTA 275 (317)
Q Consensus 238 ~~~~IkI~c~~rpg--lL~~Il~aLe~L~L~Vv~anvst~ 275 (317)
..+.++|.|.+.+. ....+++.|++.++.+.+.++...
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~ 180 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPA 180 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeec
Confidence 35788999988664 578888999999999999999655
No 131
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=62.79 E-value=28 Score=26.28 Aligned_cols=47 Identities=13% Similarity=0.335 Sum_probs=35.3
Q ss_pred CeEEEEEeCCEEEEEEEeCCCC------ChHHHHHHHHHhCCceEEEEEEEee
Q 036531 229 ADIEVNMVESHANLKIRSKRRP------KQLLKLVSGLQSMRLTILHFNVTTA 275 (317)
Q Consensus 229 ~~VeV~~~e~~~~IkI~c~~rp------glL~~Il~aLe~L~L~Vv~anvst~ 275 (317)
..|.+.+.++.+.|.|.+.+.. ..+..|-+.|...|+.+.+++|...
T Consensus 27 v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 5666677789999999997643 3477889999999999999888754
No 132
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=62.43 E-value=54 Score=23.92 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 249 RPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 249 rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
++|.+.+++++|.+.+++|.-.+.+..+- .+++-++++ ..++..++||+.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~----~is~~V~~~----~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNV----DVQFVVDRD----DYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCee----EEEEEEEHH----HHHHHHHHHHHHH
Confidence 57899999999999999998777666543 344444332 3456666666553
No 133
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=62.07 E-value=53 Score=31.60 Aligned_cols=66 Identities=12% Similarity=0.193 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
...|-+.-+++||.|.++|..|...|++.....+-... ..--|.|.+.++.... -..++++|.++-
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~---~~~v~~AL~el~ 260 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHID---DPLVKEALEELK 260 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcC---cHhHHHHHHHHH
Confidence 33444455699999999999999999999999988765 4556899999876532 256666666553
No 134
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=62.01 E-value=53 Score=23.08 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNV 272 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anv 272 (317)
..+|...+|++.|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4678999999999999999999853
No 135
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=61.20 E-value=57 Score=32.63 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=46.3
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
|-+.-+++||.|.+++..|-..|+......+-...+ ..-|.|-+.++.. . .-..++++|.++
T Consensus 300 l~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~--~-~d~~~~~aL~~l 362 (386)
T PRK10622 300 LLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN--L-RSAEMQKALKEL 362 (386)
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC--C-CCHHHHHHHHHH
Confidence 334446899999999999999999999999887654 4568999998754 2 124566665554
No 136
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=60.91 E-value=33 Score=30.78 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=52.6
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCe--EE--EEEEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEI--VL--YSLSVKVEDDCNLTSGDDIATAVYQLLGRIQE 312 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~--vl--~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i~~ 312 (317)
-+.++|...+|||++-++-+.|..+|+.+.+....+. .+. -+ ..+.+.+.-+ + +.+.|.+++..+-..+..
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~-~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--L-SISALRDAFEALCDELNV 168 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc--C-cHHHHHHHHHHHHHhhcc
Confidence 3678888999999999999999999988887776543 221 12 2333444333 3 568888888888777765
Q ss_pred hhcc
Q 036531 313 DASL 316 (317)
Q Consensus 313 ~~~~ 316 (317)
+..+
T Consensus 169 ~~~i 172 (176)
T COG2716 169 DGSI 172 (176)
T ss_pred eeee
Confidence 5443
No 137
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=60.40 E-value=45 Score=33.40 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=45.1
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe-eC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT-AD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst-~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+..+.+++.-+.+||.|.++++.+-..+.+|++.+.-. .+ +.....+.+++.+.. ..++|.++|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKE---DFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 45678999999999999999997777777999888763 22 334445666665321 23555555544
No 138
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.36 E-value=75 Score=23.99 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=36.0
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 247 KRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 247 ~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
...+|.+.+|+..|.+.++.|-.... .. .-.+|.+.-.+. . .-+.++.+|.+-|.++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~--~~iSftv~~~d~--~-~~~~~~~~l~~~l~~~ 68 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SE--ISVALTLDNTGS--T-SDQLLTQALLKELSQI 68 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cC--CEEEEEEecccc--c-hhHHHHHHHHHHHHhc
Confidence 45789999999999999999988854 22 224555553221 1 1234555666655554
No 139
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.53 E-value=54 Score=23.65 Aligned_cols=24 Identities=4% Similarity=-0.057 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHHHhCCceEEEEE
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFN 271 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~an 271 (317)
..+|++.+++++|.+.++.++...
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~ 35 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQA 35 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEe
Confidence 578999999999998877774443
No 140
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=54.81 E-value=94 Score=24.56 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=48.0
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
..+.|..+.+|+.|.+++...+--|+-|...|.+.. .+.+-.-|.++ +.. +++-+..-|.++.+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~----s~R-~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD----SDR-SVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc----CCC-ChHHHHHHHHHHcc
Confidence 456777788999999999999999999999999987 44433333333 223 47788888877765
No 141
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=54.11 E-value=60 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEe
Q 036531 249 RPKQLLKLVSGLQSMRLTILHFNVTT 274 (317)
Q Consensus 249 rpglL~~Il~aLe~L~L~Vv~anvst 274 (317)
.++.+.++++.|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67999999999999999998776543
No 142
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=53.83 E-value=15 Score=23.87 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 036531 131 VERNRRKQMNEYLSVLRS 148 (317)
Q Consensus 131 ~ER~RR~~mn~~~~~Lrs 148 (317)
.=|+||++++.++..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 348999999999999986
No 143
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=53.08 E-value=81 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=24.8
Q ss_pred EEEEEe---CCCCChHHHHHHHHHhCCceEEEEE
Q 036531 241 NLKIRS---KRRPKQLLKLVSGLQSMRLTILHFN 271 (317)
Q Consensus 241 ~IkI~c---~~rpglL~~Il~aLe~L~L~Vv~an 271 (317)
.|.|.+ ...+|.+.+++.+|.+.++.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455543 3568999999999999999998775
No 144
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.89 E-value=72 Score=21.84 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.4
Q ss_pred EEEEe---CCCCChHHHHHHHHHhCCceEEEEEE
Q 036531 242 LKIRS---KRRPKQLLKLVSGLQSMRLTILHFNV 272 (317)
Q Consensus 242 IkI~c---~~rpglL~~Il~aLe~L~L~Vv~anv 272 (317)
|.|.+ .+.++.+.+++.+|.+.++.|.-.+.
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 44543 24679999999999999999977764
No 145
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=52.86 E-value=49 Score=28.17 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=34.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeE
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIV 279 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~v 279 (317)
.|.|..+++||-|..+...|.+.|+.+-..++.-.+++-
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 578888999999999999999999999999888777653
No 146
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=52.81 E-value=70 Score=32.71 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=39.1
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecC
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVED 289 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e 289 (317)
..|-+..++++|.|.++|..+...|+.+.+...-.... .--|.|-+.++.
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 44445557889999999999999999999999876533 334778888764
No 147
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.61 E-value=1.1e+02 Score=23.64 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC---eEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE---IVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~---~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+.+.|.-+.|||.|.+.++.|-. +.+|...+....++ .++..|.++ +. ..+++.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~--~~----~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVP--DA----DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeC--hH----HHHHHHHHHHH
Confidence 46677889999999999999933 78999999876543 344444443 21 34555555544
No 148
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=51.82 E-value=2e+02 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 165 GGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 165 ~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
.+.-.-|..|+++.+.|..+++.++..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666665543
No 149
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=50.71 E-value=1e+02 Score=23.08 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=25.3
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceEEEEEE
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNV 272 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anv 272 (317)
.|.|.+. ..+|.+.+|++.|.+.|+.|-....
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 3444443 4689999999999999999988864
No 150
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=49.99 E-value=81 Score=21.57 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNV 272 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anv 272 (317)
..++.+.+++..|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4689999999999999999977763
No 151
>PRK08639 threonine dehydratase; Validated
Probab=49.16 E-value=91 Score=31.27 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=43.1
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+..+.++|.-+.+||.|.++++.+-..+-+|+..+..... +.....+.+++.+.. ..++|.++|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAE---DYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 4568899999999999999999655555588888765322 222334555554321 24566666654
No 152
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=49.07 E-value=29 Score=37.52 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=48.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
..++|....|+|+|..|+.+|. +|.-+.++|.|..++-.|.++ ++. .-..+.++|..++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~~---~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PGF---DRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Ccc---cHHHHHHHHHHHH
Confidence 5889999999999999999999 999999999999888888777 221 2456666666654
No 153
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.67 E-value=45 Score=25.98 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=36.7
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCC
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVKVEDDC 291 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~Kv~e~~ 291 (317)
|+++-+-||.++.++--||..|++-|.++.|.. .+++--....+...++.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~ 54 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHD 54 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCC
Confidence 345556699999999999999999999999974 35554444555554444
No 154
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=47.34 E-value=74 Score=32.77 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=38.4
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEE-EEEEEEec
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVL-YSLSVKVE 288 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl-~s~~~Kv~ 288 (317)
..|-+..++++|.|.++|..++..|+.++|...-...+ ..- |.|-+.++
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 34444557789999999999999999999999877643 334 77778876
No 155
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=47.15 E-value=60 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=26.7
Q ss_pred EEEEEEeC----CCCChHHHHHHHHHhCCceEEEEE
Q 036531 240 ANLKIRSK----RRPKQLLKLVSGLQSMRLTILHFN 271 (317)
Q Consensus 240 ~~IkI~c~----~rpglL~~Il~aLe~L~L~Vv~an 271 (317)
..|.|... ..+|.+.+++..|-+.|+.|+..+
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 56777776 378999999999999999998888
No 156
>PLN02317 arogenate dehydratase
Probab=46.97 E-value=1.4e+02 Score=29.96 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=37.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCe---------------EEEEEEEEecC
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEI---------------VLYSLSVKVED 289 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~---------------vl~s~~~Kv~e 289 (317)
.|-+.-+++||.|.++|..|...++.+.+...-...+. .-|.|-+.++.
T Consensus 285 Sivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg 348 (382)
T PLN02317 285 SIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA 348 (382)
T ss_pred EEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc
Confidence 33334467999999999999999999999998765332 34788888764
No 157
>PRK12483 threonine dehydratase; Reviewed
Probab=46.43 E-value=1.3e+02 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=37.1
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecC
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVED 289 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e 289 (317)
+..+.+.|.-+.+||.|.+++..|-.. +|+..+....+ ......+.+++.+
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~ 394 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP 394 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC
Confidence 456889999999999999999999877 77777776533 2344455555543
No 158
>PRK09224 threonine dehydratase; Reviewed
Probab=46.06 E-value=1.3e+02 Score=31.19 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=42.7
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+..+.+.|.-+.+||.|.++++.|- +.+|+..+....+ +..-..+.+++.+... ..++|.++|.+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~--~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQE--ERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhh--HHHHHHHHHHH
Confidence 3468999999999999999999998 5777777765533 3333445556543311 13556555543
No 159
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=46.00 E-value=88 Score=21.99 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=22.5
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEE
Q 036531 247 KRRPKQLLKLVSGLQSMRLTILHFNVT 273 (317)
Q Consensus 247 ~~rpglL~~Il~aLe~L~L~Vv~anvs 273 (317)
++.+|.+.+++..|.+.|+.|.-...+
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 567899999999999999999755443
No 160
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=45.96 E-value=1e+02 Score=31.88 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=42.4
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+..+.+.|.-+.+||.|.++++.|-. .+|+..+....+ +..-..+.+++.+.. ..++|.++|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~~---~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNPQ---ERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 45789999999999999999999987 477777765443 333344555554221 23455555543
No 161
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=45.60 E-value=62 Score=28.74 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=49.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
.+.+.-.+.||.|.++...+-..|+.+-+..+...+ +....++.+.. +. . ..|+|.+-|++++..+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~~--~-~~EQi~kQL~kLidV~ 73 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-DE--Q-VLEQIIKQLNKLIDVL 73 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-Cc--c-hHHHHHHHHHhhccce
Confidence 455666799999999999999999999888887654 33334666554 21 2 3799999999988765
No 162
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.31 E-value=3.2e+02 Score=27.18 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=10.6
Q ss_pred hhhhHHH--HHHHHHHHHHHHHHHc
Q 036531 126 MTHIAVE--RNRRKQMNEYLSVLRS 148 (317)
Q Consensus 126 ~~h~~~E--R~RR~~mn~~~~~Lrs 148 (317)
+.|...| |+||+..=+++.+|.+
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~ 235 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQE 235 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 3444443333444443
No 163
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=40.89 E-value=1.4e+02 Score=21.80 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=36.6
Q ss_pred EEEEEe---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 241 NLKIRS---KRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 241 ~IkI~c---~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|+|.. ...++.+.+++++|.+.++.|.-.+.+..+. -++|.+.- . ..++..+.|++.+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~--~isf~v~~--~----d~~~~~~~l~~~~ 64 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEH--SISFVVDE--S----DADKALEALEEEF 64 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcc--eEEEEEeH--H----HHHHHHHHHHHHH
Confidence 455543 3567999999999999999998777653332 23344432 1 2344455555554
No 164
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=40.34 E-value=29 Score=31.12 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVY 304 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~ 304 (317)
-+.|.....++||+...|.++.-+.|-.++...++.+++.+ ++.+++..... .++.++++|.
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~--a~i~lisgs~d--av~~le~~l~ 66 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEF--AGIMLISGSWD--AVTLLEATLP 66 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcce--eEEEEEeeCHH--HHHHHHHHhh
Confidence 37888999999999999999999999999999999999854 55556543321 2344544443
No 165
>PLN02705 beta-amylase
Probab=39.98 E-value=2.2e+02 Score=30.55 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHcc
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSL 149 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~Lrsl 149 (317)
|......||+||.--..-|.-||..
T Consensus 85 ~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 85 KERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 6678899999998777777777764
No 166
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=39.69 E-value=1.7e+02 Score=28.89 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=43.2
Q ss_pred EEEeCCEEEEEEEe---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 233 VNMVESHANLKIRS---KRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 233 V~~~e~~~~IkI~c---~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
|...++-+.|.|.. ..++|.+.+++.+|.+.++.|.....+..+.. .+|.+. +. ..+.+.+.|++.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V~--~~----d~~~a~~~L~~~~ 323 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTVD--ET----DADEAVRALKDQS 323 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEEe--HH----HHHHHHHHHHHHH
Confidence 33445667888884 56789999999999999999987765433322 233332 21 2355555666654
No 167
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.33 E-value=54 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 164 IGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 164 L~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
+..||+-|..||.++++|+.+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 66899999999999999998755544
No 168
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.25 E-value=1.7e+02 Score=21.95 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEE
Q 036531 247 KRRPKQLLKLVSGLQSMRLTILHFNV 272 (317)
Q Consensus 247 ~~rpglL~~Il~aLe~L~L~Vv~anv 272 (317)
...+|.+.+|+++|.+.++.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 35689999999999999999998864
No 169
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=37.57 E-value=2e+02 Score=26.40 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhC--CceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 252 QLLKLVSGLQSM--RLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 252 lL~~Il~aLe~L--~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
...++.+.+++. ..+|.+.++...+. .....+++.++.+......+++++++.+.+.
T Consensus 206 ~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~ 265 (284)
T PF01545_consen 206 LVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLR 265 (284)
T ss_dssp HHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 446677777543 48999999999998 8888899998877533334445555444443
No 170
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.08 E-value=59 Score=24.99 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 036531 164 IGGAINFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 164 L~~ai~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
+..||+-|.-||-.|++|+.++..+..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 567999999999999999988876543
No 171
>PRK06291 aspartate kinase; Provisional
Probab=35.50 E-value=2e+02 Score=29.21 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=45.5
Q ss_pred EEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 233 VNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 233 V~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
|+..++-+.|.|... ..+|++.+++.+|.+.++.|+-.+..+.+.. |++-+++. ..+...++||+.+
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~----Is~vV~~~----d~~~av~~Lh~~f 461 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVN----ISFVVDEE----DGERAVKVLHDEF 461 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCe----EEEEEeHH----HHHHHHHHHHHHh
Confidence 444455677888875 4789999999999999999997776666543 44434322 2455666666554
No 172
>PRK09034 aspartate kinase; Reviewed
Probab=35.00 E-value=1.8e+02 Score=29.63 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=43.2
Q ss_pred EEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 233 VNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 233 V~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
|...++-+.|.|... ..+|.+.+++.+|.+.++.|.-....+.+ ..|++-+.+. ..+...++||+.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se----~~Is~vV~~~----d~~~av~~LH~~f 448 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNE----DAEKAVKAIYNAF 448 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc----ceEEEEEcHH----HHHHHHHHHHHHH
Confidence 333455567777543 57899999999999999999877654433 2444444332 2345555666554
No 173
>PLN02550 threonine dehydratase
Probab=34.30 E-value=1.5e+02 Score=31.50 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEec
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-EIVLYSLSVKVE 288 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-~~vl~s~~~Kv~ 288 (317)
.+.+.|.-+.+||.|.+++..|-.. +|++.+....+ +.....+.+++.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~ 465 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH 465 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC
Confidence 3778888999999999999999875 77777776532 334445555554
No 174
>PRK14637 hypothetical protein; Provisional
Probab=33.96 E-value=1.9e+02 Score=25.16 Aligned_cols=58 Identities=7% Similarity=-0.001 Sum_probs=36.7
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHH---HHHHHHHH
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIA---TAVYQLLG 308 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~---~aL~~il~ 308 (317)
+.-|....+-..++++|++++.+.+...++.-+..+.+--+++ ++.++.+ ++|..+|.
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g---V~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG---VGLDDCARVHRILVPRLE 66 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC---CCHHHHHHHHHHHHHHhc
Confidence 4447777788889999999999999987664333333332333 3555544 44444443
No 175
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.96 E-value=1.1e+02 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNV 272 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anv 272 (317)
+.-|.+.++++.||.+|+.+-|.-.
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeecC
Confidence 4569999999999999999988763
No 176
>PRK00907 hypothetical protein; Provisional
Probab=33.72 E-value=1.2e+02 Score=24.25 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=34.5
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCc--eE--EEEEEEeeCCeEEEEEEEEec
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRL--TI--LHFNVTTADEIVLYSLSVKVE 288 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L--~V--v~anvst~~~~vl~s~~~Kv~ 288 (317)
++-|||.-..++++...|++.++.+.- +- +..+-|..|.++-.++.+.+.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at 70 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE 70 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC
Confidence 478899999999999999999997753 33 333434555554456666653
No 177
>PLN02551 aspartokinase
Probab=33.27 E-value=2.4e+02 Score=29.41 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=42.8
Q ss_pred CCEEEEEEEeC--CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 237 ESHANLKIRSK--RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 237 e~~~~IkI~c~--~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
++-+.|.|... +.+|++.+++.+|.+.|+.|.-.+..+.+- .|++-|++. ..+...++||+.+
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSei----nIS~vV~~~----d~~~Av~aLH~~F 507 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKV----NISLIVNDD----EAEQCVRALHSAF 507 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCc----EEEEEEeHH----HHHHHHHHHHHHH
Confidence 44456666643 478999999999999999998777655443 344444332 3566777777765
No 178
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=32.35 E-value=55 Score=28.57 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHcc
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSL 149 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~Lrsl 149 (317)
|.+.+..||+||.---.-|.-||..
T Consensus 12 rEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 12 RENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667789999997777777778764
No 179
>PRK06291 aspartate kinase; Provisional
Probab=31.63 E-value=2.5e+02 Score=28.53 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 036531 237 ESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTAD 276 (317)
Q Consensus 237 e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~ 276 (317)
++-+.|.|... ..+|.+.+++.+|.+.|+.|....-++..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse 361 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE 361 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 44568888865 46799999999999999999887654433
No 180
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=31.29 E-value=1.5e+02 Score=24.36 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHhCC--ceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 249 RPKQLLKLVSGLQSMR--LTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 249 rpglL~~Il~aLe~L~--L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
..|+|.+++..+..+| ++|+.++|-... +.-..-+.+..++.. ..++|-..|+++-..+
T Consensus 14 DSgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~---~L~~Il~~L~~lga~~ 75 (103)
T PF04455_consen 14 DSGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEE---HLDEILDELHQLGAVP 75 (103)
T ss_dssp TSSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHH---HHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHH---HHHHHHHHHHHHcCCC
Confidence 4689999999999987 999999997654 444445555554432 2456666666554443
No 181
>smart00338 BRLZ basic region leucin zipper.
Probab=30.88 E-value=61 Score=23.62 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhh
Q 036531 169 NFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 169 ~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
.||..|+.+++.|+.+...+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777766666554
No 182
>PRK07431 aspartate kinase; Provisional
Probab=30.22 E-value=2.6e+02 Score=29.32 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=46.4
Q ss_pred EEEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 232 EVNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 232 eV~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
+++...+-+.|.|... ..+|++.+++.+|.+.++.|+... +.+. .|++-+.+. ..++..++||+.+
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~----~Is~vv~~~----d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEV----KVSCVIDAE----DGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCC----EEEEEEcHH----HHHHHHHHHHHHh
Confidence 4455566678888875 578999999999999999998777 2222 344444332 3567777777776
No 183
>PRK11020 hypothetical protein; Provisional
Probab=29.69 E-value=93 Score=26.07 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHH
Q 036531 132 ERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKE 186 (317)
Q Consensus 132 ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~ 186 (317)
+++-=.++|++|..+|.=++. ......+.++..-.+-|..|..+|+.|+....
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaa--a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAA--ASLRGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456789999999887777 44555567777788888888888888876554
No 184
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=29.68 E-value=3e+02 Score=27.05 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 237 ESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 237 e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.+-..|.|... ..+|.+.+++++|.+.|+.|+... +.+.. .+|.+.. . ..+...++||+.+
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~~--is~vv~~--~----d~~~av~~Lh~~f 398 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSETN--ISFLVDE--K----DAEKAVRKLHEVF 398 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCE--EEEEEeH--H----HHHHHHHHHHHHH
Confidence 34456666653 589999999999999999998543 33332 1233332 1 2455666666554
No 185
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=29.47 E-value=64 Score=24.88 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=46.1
Q ss_pred EEEEeCC-CCChHHHHHHHHHhCCceEEEEEEEeeCCe---------EEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 242 LKIRSKR-RPKQLLKLVSGLQSMRLTILHFNVTTADEI---------VLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 242 IkI~c~~-rpglL~~Il~aLe~L~L~Vv~anvst~~~~---------vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
|.|.-++ +.+.+.+|-+.|-++|+.|.+.+-. .+. -.+++.+.++... .+.++++++|.++-..+
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l--~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~la~el 76 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL--SGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLELASEL 76 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh--hccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHHhccc
Confidence 4566677 7899999999999999998877652 222 1456666666333 36889999988765543
No 186
>PRK08210 aspartate kinase I; Reviewed
Probab=29.23 E-value=2.8e+02 Score=27.46 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=42.0
Q ss_pred EEEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 232 EVNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 232 eV~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
++.+.++-+.|.|... ..+|.+.+++++|.+.++.|+. +++.+. .+++-+... ..+...++||+.+
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~----~is~vv~~~----~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHT----TIWVLVKEE----DMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCC----EEEEEEcHH----HHHHHHHHHHHHh
Confidence 3444556677777764 5789999999999999999975 333232 233333222 2456666666654
No 187
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.20 E-value=92 Score=24.41 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 164 IGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 164 L~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
|..||+-|.-||.+|++|+.+...+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999988776543
No 188
>PF15392 Joubert: Joubert syndrome-associated
Probab=29.00 E-value=1.5e+02 Score=29.04 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccC---CCCcCCCCCccchHHHHHHHHHHHHHH
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLM---PDSYVQRGDQASIIGGAINFVKELEQR 177 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~Lrslv---P~~~~~k~dKasiL~~ai~YIk~Lq~~ 177 (317)
+....+..|+||++|-+++..|..+- -.+|..+.+-...-..-|.-.++++..
T Consensus 57 rEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~E 112 (329)
T PF15392_consen 57 REIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEE 112 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 56689999999999999988886554 222334433222333444444444433
No 189
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=28.98 E-value=3.1e+02 Score=30.28 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=46.4
Q ss_pred EEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 233 VNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 233 V~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
|++.++-+.|.|... ..+|++.+++.+|.+.++.|+-.+..+.+. .|++-+.+. ..+...++||+.+
T Consensus 390 i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~----~Is~vV~~~----d~~~al~~LH~~f 459 (819)
T PRK09436 390 LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSER----SISVVIDND----DATKALRACHQSF 459 (819)
T ss_pred EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccc----eEEEEEcHH----HHHHHHHHHHHHH
Confidence 444566678888875 478999999999999999999887666654 344444322 2455566666655
No 190
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.51 E-value=2.3e+02 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=27.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 157 RGDQASIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 157 k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
-..+.++|+.-=.||-.|+.+|++|.-+...+-
T Consensus 189 f~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 189 FVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999987776543
No 191
>PRK14639 hypothetical protein; Provisional
Probab=28.39 E-value=1.8e+02 Score=24.84 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHH---HHHHHHHH
Q 036531 256 LVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIA---TAVYQLLG 308 (317)
Q Consensus 256 Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~---~aL~~il~ 308 (317)
+-..++++|++++.+.+...++.-+..+.+.-+++ ++.++.. ++|..+|.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g---v~iddC~~vSr~is~~LD 55 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG---VNLDDCERLSELLSPIFD 55 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC---CCHHHHHHHHHHHHHHhc
Confidence 44578999999999999988765444444443333 3555544 44444443
No 192
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.11 E-value=2.2e+02 Score=20.07 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=18.6
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCceE
Q 036531 241 NLKIRSK---RRPKQLLKLVSGLQSMRLTI 267 (317)
Q Consensus 241 ~IkI~c~---~rpglL~~Il~aLe~L~L~V 267 (317)
.|.|... .+++++.+++.+|.+.++.+
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRM 32 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEE
Confidence 3455553 57899999999997644433
No 193
>PRK06635 aspartate kinase; Reviewed
Probab=28.05 E-value=2.6e+02 Score=27.60 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=30.6
Q ss_pred EEEeCCEEEEEEEe---CCCCChHHHHHHHHHhCCceEEEEE
Q 036531 233 VNMVESHANLKIRS---KRRPKQLLKLVSGLQSMRLTILHFN 271 (317)
Q Consensus 233 V~~~e~~~~IkI~c---~~rpglL~~Il~aLe~L~L~Vv~an 271 (317)
|...++-+.|.|.+ ...||.+.+++++|.+.++.|....
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 33445556788875 4578999999999999999998765
No 194
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.48 E-value=2.1e+02 Score=27.79 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=4.7
Q ss_pred chHHHHHHHHHH
Q 036531 162 SIIGGAINFVKE 173 (317)
Q Consensus 162 siL~~ai~YIk~ 173 (317)
+-|..=|.|+|+
T Consensus 272 ~~lerEI~ylKq 283 (294)
T KOG4571|consen 272 SELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 195
>PLN02551 aspartokinase
Probab=27.37 E-value=2.6e+02 Score=29.16 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCEEEEEEEeCC---CCChHHHHHHHHHhCCceEEEEEE
Q 036531 237 ESHANLKIRSKR---RPKQLLKLVSGLQSMRLTILHFNV 272 (317)
Q Consensus 237 e~~~~IkI~c~~---rpglL~~Il~aLe~L~L~Vv~anv 272 (317)
.+-+.|.|.+.. .+|.+.+|+..|.++++.|.....
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Iss 402 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 402 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEec
Confidence 344688888764 679999999999999999998853
No 196
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=27.32 E-value=3.3e+02 Score=24.82 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhCC--ceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 252 QLLKLVSGLQSMR--LTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 252 lL~~Il~aLe~L~--L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
..-++.+.+.+.. .+|.++.+...+. .++..+++.++++..+....++...+.+.
T Consensus 193 ~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~ 250 (268)
T TIGR01297 193 DLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIERE 250 (268)
T ss_pred cHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHH
Confidence 3566777776643 5888888888887 88889999998775443345555555543
No 197
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.26 E-value=82 Score=22.86 Aligned_cols=19 Identities=26% Similarity=0.629 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 036531 169 NFVKELEQRLQSLGARKEI 187 (317)
Q Consensus 169 ~YIk~Lq~~v~~L~~~~~~ 187 (317)
.||..|+.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~ 44 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 198
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=26.92 E-value=1.5e+02 Score=27.94 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhHHhh
Q 036531 171 VKELEQRLQSLGARKEIK 188 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~~ 188 (317)
||+|+.||++||.++...
T Consensus 57 L~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 588999999999988653
No 199
>PF14992 TMCO5: TMCO5 family
Probab=26.15 E-value=88 Score=30.13 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 162 SIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 162 siL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
.+..+++.||++||+.++.++.+++.+-
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~~l 171 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEMLL 171 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998877643
No 200
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=25.79 E-value=5.3e+02 Score=23.74 Aligned_cols=63 Identities=6% Similarity=0.179 Sum_probs=39.7
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVY 304 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~ 304 (317)
.....+.|.|... .+.++.+.|++.++.+.+.++...++.....+.+++... . +.+++...|.
T Consensus 142 ~~~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~L~ 204 (215)
T PRK09977 142 NKHYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLHAT--T-SIEDLYRLLK 204 (215)
T ss_pred cCcEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEECCC--C-CHHHHHHHHh
Confidence 3445677777644 368888999999999999998755432233444554432 2 3556655443
No 201
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=25.40 E-value=3.2e+02 Score=24.73 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=31.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD 276 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~ 276 (317)
-|.|...++||.|.+|--.+-++|-.|+.++--..+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~ 39 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEK 39 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhc
Confidence 467888999999999999999999999998865543
No 202
>PRK08818 prephenate dehydrogenase; Provisional
Probab=25.18 E-value=3.9e+02 Score=26.63 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=35.6
Q ss_pred EEEEEeC-CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCC
Q 036531 241 NLKIRSK-RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDD 290 (317)
Q Consensus 241 ~IkI~c~-~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~ 290 (317)
.|.+.-+ ++||.|.+|+..|-..|+.+.+..+.....- -|.|.+.+...
T Consensus 297 ~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~-~y~f~i~~~~~ 346 (370)
T PRK08818 297 TLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAG-ELHFRIGFEPG 346 (370)
T ss_pred EEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCc-eEEEEEEEecc
Confidence 3444445 8999999999999999999999999544332 34466666543
No 203
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.95 E-value=1.3e+02 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 161 ASIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 161 asiL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
+.-|++|+.-+.+|+.+++.|+.+++...
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999999999877543
No 204
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=23.26 E-value=3.3e+02 Score=25.74 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHhCC--ceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 251 KQLLKLVSGLQSMR--LTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 251 glL~~Il~aLe~L~--L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
....+|.+.+++.. .+|.++.+...|...+..+++.++++-.+...++|.+.+.+.|.
T Consensus 213 ~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~ 272 (299)
T PRK09509 213 EERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALL 272 (299)
T ss_pred HHHHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35567777777653 57778888888877777888888765333234556666665554
No 205
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.06 E-value=1.1e+02 Score=21.61 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHHhhhhc
Q 036531 171 VKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~~~~~ 191 (317)
|..|+++++.|+.++..++..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888877643
No 206
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=22.82 E-value=1.6e+02 Score=20.76 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 036531 162 SIIGGAINFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 162 siL~~ai~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
..-+.+..+|+.|.+++..+..+++.++.
T Consensus 16 ~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 16 AFQNKVTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999988888764
No 207
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=22.82 E-value=1.2e+02 Score=30.54 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=51.5
Q ss_pred CCcCeEEEEEeCCE--EEEEEEeCCCCCh-HHHHHHHHHh--C-CceEEEEEEEeeCC---------eEEEEEEEEecCC
Q 036531 226 NSIADIEVNMVESH--ANLKIRSKRRPKQ-LLKLVSGLQS--M-RLTILHFNVTTADE---------IVLYSLSVKVEDD 290 (317)
Q Consensus 226 ~~~~~VeV~~~e~~--~~IkI~c~~rpgl-L~~Il~aLe~--L-~L~Vv~anvst~~~---------~vl~s~~~Kv~e~ 290 (317)
+.--+|+|+|.|+. |.|+|.-+++..+ |-.+-+.+.. . .++|.++.+++... .=.|...+..+..
T Consensus 209 aGREDvDvRMLG~GRPFvlEi~~P~rr~~dl~~le~~IN~~~~g~V~v~~L~~~~~~~v~~ik~~~~~K~Y~alV~~~~~ 288 (388)
T TIGR01213 209 AGREDVDVRMLGTGRPFVLEVKEPRYRKIDLDPLEEEINTSGKGKVEVEGLKFATREEVEEVKEEKHRKVYRALVEVDGP 288 (388)
T ss_pred cCccccceeeccCCCceEEEecCCccCCCCHHHHHHHHhhccCCCEEEEEeEEEcHHHHHHHhccCCceEEEEEEEECCC
Confidence 44579999999754 9999999887654 3344444544 3 48888888766432 1234545555433
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 036531 291 CNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 291 ~~~~s~eeI~~aL~~il~ 308 (317)
+ +.+++++++..+-+
T Consensus 289 --v-~~e~L~~~~~~l~g 303 (388)
T TIGR01213 289 --V-SDEDLEELCKELEG 303 (388)
T ss_pred --C-CHHHHHHHHHhccC
Confidence 3 67888877766644
No 208
>PRK11191 RNase E inhibitor protein; Provisional
Probab=22.75 E-value=3.1e+02 Score=23.61 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNVT-TADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anvs-t~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.....|-+++..+.++|.+|..+.-. .-++..+|+|.+-.+.. + ..+.|.+.+.+++.
T Consensus 41 ~d~~~lek~a~~a~klGyeV~~~ee~e~edg~~~~~~~~~~e~~--l-~~e~I~~~~~~L~~ 99 (138)
T PRK11191 41 DDFDKLEKAAVEAFKLGYEVTDAEELELEDGDVIFCCDAVSEVA--L-NAELIDAQVEQLLA 99 (138)
T ss_pred CCHHHHHHHHHHHHHcCCeeecccccccCCCCeEEEEEEEecCC--C-CHHHHHHHHHHHHH
Confidence 35677899999999999999766543 45667778877766543 3 45666666555544
No 209
>PRK02047 hypothetical protein; Provisional
Probab=22.53 E-value=2.4e+02 Score=22.32 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=41.7
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhC--CceE--EEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSM--RLTI--LHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L--~L~V--v~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
++.+||.-...+++...|++.++.+ +++. ++.+-|..|..+-+++.+.+. +. +=..+|.+.|...
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~------s~-eq~~~iY~~L~~~ 84 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRAT------SR-EQLDNIYRALTGH 84 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEEC------CH-HHHHHHHHHHhhC
Confidence 4678888888888888888888766 4333 555556666666566666664 22 3334555555543
No 210
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=22.47 E-value=4.3e+02 Score=31.49 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=50.1
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEE---Eee---CCeEE-------------EEEEEEecCCCCCCCHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNV---TTA---DEIVL-------------YSLSVKVEDDCNLTSGDD 298 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anv---st~---~~~vl-------------~s~~~Kv~e~~~~~s~ee 298 (317)
++..|.|.|.+.|.++-.|..+|..+|+.|....- .+. +|.+. --|++++..-..-...++
T Consensus 16 ~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~~~~~ 95 (1528)
T PF05088_consen 16 DHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPEELEA 95 (1528)
T ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHHHHHH
Confidence 35789999999999999999999999998765432 221 22211 234445543322224677
Q ss_pred HHHHHHHHHHHHHh
Q 036531 299 IATAVYQLLGRIQE 312 (317)
Q Consensus 299 I~~aL~~il~~i~~ 312 (317)
|++.|.++|..+..
T Consensus 96 L~~~L~~VL~dVr~ 109 (1528)
T PF05088_consen 96 LREDLERVLEDVRA 109 (1528)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887743
No 211
>PRK00341 hypothetical protein; Provisional
Probab=22.23 E-value=2.1e+02 Score=22.65 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=33.5
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEE----EEEeeCCeEEEEEEEEec
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHF----NVTTADEIVLYSLSVKVE 288 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~a----nvst~~~~vl~s~~~Kv~ 288 (317)
++-+||.-...+++...|++.++.+. ++-.. +-|..|..+-+++.+.+.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~ 69 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT 69 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC
Confidence 36788888899999999999998664 44333 334444455467777764
No 212
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.10 E-value=1.2e+02 Score=18.28 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHh
Q 036531 171 VKELEQRLQSLGARKEI 187 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~ 187 (317)
|..|+.+|.+|+.++..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888888877654
No 213
>PRK06349 homoserine dehydrogenase; Provisional
Probab=22.10 E-value=4.7e+02 Score=26.31 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=31.9
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT 274 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst 274 (317)
..++|++...++||.|.+|-..|.+.++.+.++....
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~ 383 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG 383 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc
Confidence 4589999999999999999999999999888765443
No 214
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=21.84 E-value=1.9e+02 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 163 IIGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 163 iL~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
=|+++-+.|.+|+++++.|+.++..++..
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 47889999999999999999998887643
No 215
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=21.74 E-value=1.4e+02 Score=30.93 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD 276 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~ 276 (317)
.++|.|.+|-|+..+|++.|-..++++....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999996654
No 216
>PRK14647 hypothetical protein; Provisional
Probab=21.64 E-value=3.3e+02 Score=23.68 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=29.0
Q ss_pred HHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHH---HHHHHHHHH
Q 036531 257 VSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDI---ATAVYQLLG 308 (317)
Q Consensus 257 l~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI---~~aL~~il~ 308 (317)
-..++++|++++.+.+...++.-+..+.+.-+++ ++.++. -++|..+|.
T Consensus 15 ~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~g---vslddC~~vSr~is~~LD 66 (159)
T PRK14647 15 EQVLSSLGLELVELEYKREGREMVLRLFIDKEGG---VNLDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCC---CCHHHHHHHHHHHHHHHc
Confidence 3447899999999999987664333333332233 355554 444444443
No 217
>PRK08841 aspartate kinase; Validated
Probab=21.44 E-value=3.5e+02 Score=27.01 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=42.5
Q ss_pred eCCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 236 VESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 236 ~e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.++-..|.|.-...+|.+.+++.+|.+.++.|+.... .+ ..+++-+++. ..+...++||+.+.
T Consensus 315 ~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~---s~---~~is~vv~~~----~~~~av~~lH~~f~ 377 (392)
T PRK08841 315 SESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST---EP---QSSMLVLDPA----NVDRAANILHKTYV 377 (392)
T ss_pred eCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC---CC---cEEEEEEeHH----HHHHHHHHHHHHHc
Confidence 3455677887777899999999999999999966553 22 2344444322 35666777776653
No 218
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=21.13 E-value=1.5e+02 Score=30.29 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
...|+.+ |++-..+|-+|.+|||+ +|+|++-.+..-.+|...+-.++.
T Consensus 112 ~ivH~Fi----kdkY~~RFpELeSLVp~--------------~ldY~~~Vk~LgNelD~~~~~l~~ 159 (492)
T KOG2574|consen 112 VIVHNFI----KDKYSKRFPELESLVPN--------------PLDYAKVVKELGNELDLKKVDLEL 159 (492)
T ss_pred HHHHHHH----HHHHHhhhhhhHhhccC--------------HHHHHHHHHHHhhhHHHHHhhhhh
Confidence 3445554 56667789999999998 789998888777777776666553
No 219
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.10 E-value=84 Score=34.56 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHhhh
Q 036531 171 VKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~~~ 189 (317)
-+.|+.+++.|..++..+.
T Consensus 439 ~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555554444
No 220
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=20.94 E-value=30 Score=37.23 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHccCCCC---cCCCCCccchHHHHHHHHHHHHHHHHHHHHhHH
Q 036531 126 MTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELEQRLQSLGARKE 186 (317)
Q Consensus 126 ~~h~~~ER~RR~~mn~~~~~LrslvP~~---~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~ 186 (317)
..|+..|||||-...++|..|-.|.|.- .-++..+++||- +.|+.+|+.-+.+.++..
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 4599999999999999999999998871 123567788888 888888887776665444
No 221
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=20.92 E-value=5.9e+02 Score=29.01 Aligned_cols=63 Identities=8% Similarity=0.000 Sum_probs=46.1
Q ss_pred CeEEEEEeC-C--EEEEEEEe---CCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEecCCC
Q 036531 229 ADIEVNMVE-S--HANLKIRS---KRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVKVEDDC 291 (317)
Q Consensus 229 ~~VeV~~~e-~--~~~IkI~c---~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~Kv~e~~ 291 (317)
+-|+|..++ + .+.+-|-- ....+.|+.|.+.+.-+||.+.++=+-++ ++..+|+|-+....+.
T Consensus 217 ~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 217 PVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 455555554 2 34444433 33458999999999999999999999877 7788899999866553
No 222
>PRK06635 aspartate kinase; Reviewed
Probab=20.53 E-value=3.9e+02 Score=26.29 Aligned_cols=51 Identities=8% Similarity=0.180 Sum_probs=35.7
Q ss_pred EeCCEEEEEEEe-CCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEE
Q 036531 235 MVESHANLKIRS-KRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSV 285 (317)
Q Consensus 235 ~~e~~~~IkI~c-~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~ 285 (317)
..++-+.|.|.+ ..++|.+.+++.+|.+.|+.|...+.+...+ .+-++|.+
T Consensus 258 ~~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v 310 (404)
T PRK06635 258 FDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTV 310 (404)
T ss_pred ecCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEE
Confidence 335556777765 3478999999999999999999876654332 34445544
No 223
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=20.35 E-value=4e+02 Score=23.00 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhCCceEEEEEE-----------EeeCCeEEEEEEEEecCCCCC-CCHHHHHHHH
Q 036531 252 QLLKLVSGLQSMRLTILHFNV-----------TTADEIVLYSLSVKVEDDCNL-TSGDDIATAV 303 (317)
Q Consensus 252 lL~~Il~aLe~L~L~Vv~anv-----------st~~~~vl~s~~~Kv~e~~~~-~s~eeI~~aL 303 (317)
.=-+|+..|++.|+.|+.+-. ...++-++++|.+|..-+..+ +..|+|..-|
T Consensus 9 ~EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiYl~~e~ve~L~ 72 (137)
T COG1591 9 FERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIYLDKEQVEKLV 72 (137)
T ss_pred HHHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEEEcHHHHHHHH
Confidence 345788999999999999822 222445688999998766542 3566665443
No 224
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.27 E-value=5.4e+02 Score=22.01 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=27.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCC--ceEEEEEEEeeCCeEEEEE
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMR--LTILHFNVTTADEIVLYSL 283 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~--L~Vv~anvst~~~~vl~s~ 283 (317)
.+-|..+++||-|.+|+.+|-..+ |+-+-+-++-- +..+..+
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~ 114 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIV 114 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEE
Confidence 345666899999999999998766 44444444433 4333333
Done!