Query 036531
Match_columns 317
No_of_seqs 214 out of 1178
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1.5E-16 5.1E-21 123.6 7.7 68 123-191 5-72 (82)
2 1hlo_A Protein (transcription 99.6 6.1E-16 2.1E-20 119.4 7.1 70 121-190 9-78 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 9.9E-16 3.4E-20 118.9 7.5 68 124-191 2-69 (83)
4 1nkp_A C-MYC, MYC proto-oncoge 99.6 3.1E-15 1.1E-19 117.6 8.0 70 121-190 3-73 (88)
5 4h10_B Circadian locomoter out 99.6 2E-15 6.9E-20 114.0 6.0 61 121-182 5-65 (71)
6 1an4_A Protein (upstream stimu 99.5 3.6E-15 1.2E-19 110.6 2.4 55 124-178 5-63 (65)
7 1nlw_A MAD protein, MAX dimeri 99.5 4.9E-14 1.7E-18 108.9 8.4 67 125-191 2-69 (80)
8 1a0a_A BHLH, protein (phosphat 99.5 4E-15 1.4E-19 110.1 0.9 55 124-178 2-61 (63)
9 4ati_A MITF, microphthalmia-as 99.5 4.9E-14 1.7E-18 116.5 6.6 63 125-187 28-92 (118)
10 4h10_A ARYL hydrocarbon recept 99.5 1.9E-14 6.5E-19 109.4 3.3 58 119-176 4-63 (73)
11 3u5v_A Protein MAX, transcript 99.4 4.6E-14 1.6E-18 108.0 2.7 60 123-182 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.3 7.9E-13 2.7E-17 99.1 5.3 58 122-179 10-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.1E-11 3.9E-16 90.6 5.9 56 124-179 2-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 8.7E-10 3E-14 105.6 5.3 54 123-177 11-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 6.1E-09 2.1E-13 100.9 5.5 53 124-176 13-67 (387)
16 2lfh_A DNA-binding protein inh 98.7 3.4E-09 1.2E-13 78.9 1.3 47 130-176 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.4 3.5E-07 1.2E-11 70.6 6.5 52 136-187 4-57 (83)
18 4aya_A DNA-binding protein inh 98.2 1.9E-06 6.4E-11 68.4 5.9 49 132-180 33-82 (97)
19 1zpv_A ACT domain protein; str 97.5 0.0015 5.1E-08 49.5 11.9 69 239-310 5-73 (91)
20 1u8s_A Glycine cleavage system 96.8 0.0066 2.2E-07 52.5 10.1 67 239-309 6-72 (192)
21 2ko1_A CTR148A, GTP pyrophosph 96.5 0.006 2E-07 45.4 6.3 50 239-288 5-54 (88)
22 2nyi_A Unknown protein; protei 96.2 0.022 7.4E-07 49.7 9.5 68 239-310 93-166 (195)
23 2nyi_A Unknown protein; protei 96.2 0.017 6E-07 50.3 8.9 50 239-288 5-54 (195)
24 1u8s_A Glycine cleavage system 95.9 0.07 2.4E-06 45.9 11.0 70 239-311 93-170 (192)
25 3obi_A Formyltetrahydrofolate 93.6 0.38 1.3E-05 44.7 10.1 72 237-310 4-77 (288)
26 3p96_A Phosphoserine phosphata 93.4 0.3 1E-05 46.7 9.3 71 238-310 11-81 (415)
27 3o1l_A Formyltetrahydrofolate 93.2 0.49 1.7E-05 44.3 10.2 71 238-310 21-93 (302)
28 3n0v_A Formyltetrahydrofolate 92.8 0.5 1.7E-05 43.9 9.6 70 238-310 7-78 (286)
29 3lou_A Formyltetrahydrofolate 92.5 0.95 3.3E-05 42.1 11.0 71 238-310 9-83 (292)
30 2f1f_A Acetolactate synthase i 92.0 0.21 7.1E-06 42.8 5.5 64 240-307 4-69 (164)
31 2jhe_A Transcription regulator 91.6 0.5 1.7E-05 38.9 7.3 35 241-275 2-36 (190)
32 2fgc_A Acetolactate synthase, 90.6 0.4 1.4E-05 42.3 5.9 65 240-308 30-96 (193)
33 2pc6_A Probable acetolactate s 90.5 0.21 7.1E-06 42.9 3.9 65 240-308 5-71 (165)
34 3nrb_A Formyltetrahydrofolate 89.3 1.3 4.5E-05 41.0 8.7 66 238-307 6-73 (287)
35 1y7p_A Hypothetical protein AF 89.3 0.74 2.5E-05 41.4 6.6 60 240-305 5-69 (223)
36 2f06_A Conserved hypothetical 76.9 14 0.00049 29.5 9.0 56 242-305 75-130 (144)
37 3luy_A Probable chorismate mut 70.3 44 0.0015 31.4 11.7 57 248-307 217-274 (329)
38 2qmx_A Prephenate dehydratase; 70.1 16 0.00055 33.6 8.5 63 241-306 202-265 (283)
39 2f06_A Conserved hypothetical 65.8 34 0.0012 27.2 8.8 37 241-277 8-44 (144)
40 2qmw_A PDT, prephenate dehydra 65.7 22 0.00076 32.4 8.4 64 239-306 186-253 (267)
41 3mwb_A Prephenate dehydratase; 64.9 25 0.00086 32.8 8.8 64 240-306 202-267 (313)
42 2re1_A Aspartokinase, alpha an 62.5 30 0.001 28.6 8.1 39 233-271 97-138 (167)
43 2dt9_A Aspartokinase; protein- 60.8 37 0.0013 28.0 8.3 52 235-286 12-67 (167)
44 3he4_B Synzip5; heterodimeric 60.5 13 0.00044 24.3 4.1 27 163-189 4-30 (46)
45 3byp_A CZRB protein; membrane 58.6 47 0.0016 24.3 7.9 56 252-307 11-70 (94)
46 2oqq_A Transcription factor HY 53.4 12 0.0004 24.9 3.0 23 169-191 3-25 (42)
47 2dtj_A Aspartokinase; protein- 52.8 48 0.0016 27.7 7.8 52 235-286 11-66 (178)
48 2re1_A Aspartokinase, alpha an 49.8 39 0.0013 27.9 6.7 52 235-286 21-74 (167)
49 3s1t_A Aspartokinase; ACT doma 49.4 61 0.0021 27.3 8.0 65 233-307 90-157 (181)
50 1zme_C Proline utilization tra 49.1 14 0.00049 25.8 3.3 23 168-190 43-65 (70)
51 2zzt_A Putative uncharacterize 48.0 56 0.0019 25.0 6.9 57 252-308 11-69 (107)
52 2er8_A Regulatory protein Leu3 48.0 12 0.0004 26.6 2.6 22 168-189 48-69 (72)
53 2dt9_A Aspartokinase; protein- 46.7 64 0.0022 26.5 7.5 66 232-307 88-156 (167)
54 2dtj_A Aspartokinase; protein- 46.2 78 0.0027 26.4 8.1 65 233-307 89-156 (178)
55 4hti_A Receptor-type tyrosine- 45.2 99 0.0034 24.1 7.8 78 232-313 2-84 (99)
56 3s1t_A Aspartokinase; ACT doma 45.1 1.4E+02 0.0047 25.1 9.5 51 236-286 13-67 (181)
57 2wt7_A Proto-oncogene protein 43.7 29 0.00099 24.5 4.2 44 132-190 1-44 (63)
58 1dh3_A Transcription factor CR 42.6 21 0.00071 24.8 3.2 23 169-191 22-44 (55)
59 2lqj_A Mg2+ transport protein; 42.1 26 0.0009 26.8 4.0 36 239-274 8-45 (94)
60 3ab4_A Aspartokinase; aspartat 40.9 1.4E+02 0.0047 28.4 9.9 54 233-286 258-315 (421)
61 3p96_A Phosphoserine phosphata 40.3 1.3E+02 0.0046 27.9 9.6 69 238-310 100-169 (415)
62 1phz_A Protein (phenylalanine 38.0 32 0.0011 33.7 4.7 64 240-307 35-99 (429)
63 3h90_A Ferrous-iron efflux pum 37.3 1.1E+02 0.0039 27.1 8.2 57 252-308 207-265 (283)
64 2jee_A YIIU; FTSZ, septum, coi 35.8 42 0.0014 25.3 4.1 27 164-190 15-41 (81)
65 1rwu_A Hypothetical UPF0250 pr 35.6 56 0.0019 25.7 5.1 65 238-310 35-102 (109)
66 1gd2_E Transcription factor PA 35.5 30 0.001 25.3 3.2 17 169-185 29-45 (70)
67 2l5g_A GPS2 protein, G protein 34.5 55 0.0019 21.1 3.8 31 158-188 4-34 (38)
68 1ygy_A PGDH, D-3-phosphoglycer 33.0 1.9E+02 0.0065 28.4 9.7 62 238-305 453-516 (529)
69 4go7_X Aspartokinase; transfer 33.0 1.6E+02 0.0056 25.3 8.2 53 235-287 31-87 (200)
70 2rrl_A FLIK, flagellar HOOK-le 32.1 99 0.0034 26.3 6.4 48 228-275 100-153 (169)
71 1hwt_C Protein (heme activator 31.5 21 0.00073 25.6 1.8 22 168-189 57-78 (81)
72 3ab4_A Aspartokinase; aspartat 31.3 1.9E+02 0.0065 27.4 9.1 65 233-307 338-405 (421)
73 1pd7_B MAD1; PAH2, SIN3, eukar 28.6 64 0.0022 19.1 3.1 20 158-177 2-21 (26)
74 1gmj_A ATPase inhibitor; coile 28.2 1.1E+02 0.0036 23.3 5.2 45 135-189 34-78 (84)
75 2dgc_A Protein (GCN4); basic d 27.9 48 0.0017 23.5 3.2 23 168-190 29-51 (63)
76 1pyi_A Protein (pyrimidine pat 27.5 46 0.0016 24.6 3.2 23 168-190 47-69 (96)
77 3mgj_A Uncharacterized protein 27.5 94 0.0032 25.0 5.1 55 249-306 14-71 (118)
78 1kd8_B GABH BLL, GCN4 acid bas 27.3 52 0.0018 21.0 2.8 19 171-189 3-21 (36)
79 3tvi_A Aspartokinase; structur 26.6 2.6E+02 0.0089 27.0 9.2 64 236-307 371-437 (446)
80 1jnm_A Proto-oncogene C-JUN; B 25.9 55 0.0019 22.8 3.2 22 168-189 21-42 (62)
81 3fx7_A Putative uncharacterize 25.6 79 0.0027 24.5 4.2 23 163-185 64-86 (94)
82 2lf0_A Uncharacterized protein 24.3 1.4E+02 0.0048 24.0 5.5 55 131-187 7-61 (123)
83 1p3q_Q VPS9P, vacuolar protein 24.2 59 0.002 22.6 2.9 23 130-152 3-25 (54)
84 2dnr_A Synaptojanin-1; RRM dom 24.0 1.2E+02 0.004 23.2 4.9 38 237-275 7-50 (91)
85 3k29_A Putative uncharacterize 23.4 96 0.0033 26.5 4.6 60 124-188 37-97 (169)
86 2wt7_A Proto-oncogene protein 23.2 66 0.0023 22.6 3.2 16 173-188 41-56 (63)
87 3coq_A Regulatory protein GAL4 23.1 64 0.0022 23.3 3.2 22 168-189 44-65 (89)
88 3c3g_A Alpha/beta peptide with 22.4 76 0.0026 19.8 2.8 20 171-190 2-21 (33)
89 2wq1_A General control protein 22.4 76 0.0026 19.8 2.8 19 171-189 2-20 (33)
90 3mah_A Aspartokinase; aspartat 22.4 1.4E+02 0.0046 24.2 5.4 67 232-308 81-150 (157)
91 1t2k_D Cyclic-AMP-dependent tr 22.2 72 0.0025 22.1 3.2 21 169-189 22-42 (61)
92 2wuj_A Septum site-determining 21.6 93 0.0032 21.4 3.6 28 162-189 27-54 (57)
93 3ra3_B P2F; coiled coil domain 20.5 61 0.0021 19.0 2.0 20 171-190 2-21 (28)
94 3v86_A De novo design helix; c 20.0 77 0.0026 18.5 2.3 20 170-189 1-20 (27)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.66 E-value=1.5e-16 Score=123.57 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=62.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 123 NQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 123 ~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
.++.+|+.+||+||.+||+.|..|++|||.. ..|++|++||.+||+||++||.+++.|+.+...++..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999983 4899999999999999999999999999999887654
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=6.1e-16 Score=119.44 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=63.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 036531 121 IENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 121 ~~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
...+|.+|+.+||+||..||+.|..|+++||.....|.+|++||..||+||++|+++++.|+.+++.++.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999843469999999999999999999999999999988764
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=9.9e-16 Score=118.95 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=61.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
+|.+|+.+||+||..||+.|..|+++||.....|.+|++||..||+||+.|+++++.|+.+++.+...
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998445799999999999999999999999999888877644
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=3.1e-15 Score=117.60 Aligned_cols=70 Identities=20% Similarity=0.373 Sum_probs=61.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHccCCCC-cCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 036531 121 IENQRMTHIAVERNRRKQMNEYLSVLRSLMPDS-YVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 121 ~~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
+..+|.+|+..||+||..||+.|..||++||.. ...|.+|++||.+||+||++|+.+.+.|..+++.+..
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999983 1369999999999999999999999988777666543
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=114.00 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=54.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 036531 121 IENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLG 182 (317)
Q Consensus 121 ~~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~ 182 (317)
...+|.+|+.+||+||++||++|..|++|||.. ..|+||++||..||+||+.||+++.-|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345689999999999999999999999999973 5699999999999999999999887654
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=3.6e-15 Score=110.61 Aligned_cols=55 Identities=31% Similarity=0.572 Sum_probs=49.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCCcC----CCCCccchHHHHHHHHHHHHHHH
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSYV----QRGDQASIIGGAINFVKELEQRL 178 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~----~k~dKasiL~~ai~YIk~Lq~~v 178 (317)
++.+|+.+||+||.+||+.|..|++|||.... .|++|++||.+||+||++||++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999998432 27899999999999999999764
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=4.9e-14 Score=108.92 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=59.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCCC-cCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLMPDS-YVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
|.+|+..||+||..||+.|..|+++||.. ...|..|++||.+|++||+.|+++.+.|..+++.+...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999962 24688899999999999999999999999888877643
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.48 E-value=4e-15 Score=110.06 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=48.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCCc-----CCCCCccchHHHHHHHHHHHHHHH
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDSY-----VQRGDQASIIGGAINFVKELEQRL 178 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~-----~~k~dKasiL~~ai~YIk~Lq~~v 178 (317)
+|.+|+.+||+||++||+.|..|++|||..+ ..+.+|++||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999999999999999631 246779999999999999999765
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.47 E-value=4.9e-14 Score=116.46 Aligned_cols=63 Identities=22% Similarity=0.421 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 036531 125 RMTHIAVERNRRKQMNEYLSVLRSLMPDSY--VQRGDQASIIGGAINFVKELEQRLQSLGARKEI 187 (317)
Q Consensus 125 ~~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~ 187 (317)
+.+|+.+||+||++||++|..|++|||... ..|++|++||.+||+||++||++++.|+.....
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999832 247889999999999999999999999875443
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=1.9e-14 Score=109.35 Aligned_cols=58 Identities=29% Similarity=0.518 Sum_probs=50.3
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCccchHHHHHHHHHHHHH
Q 036531 119 EEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSY--VQRGDQASIIGGAINFVKELEQ 176 (317)
Q Consensus 119 ee~~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasiL~~ai~YIk~Lq~ 176 (317)
+....+|.+|+.+||+||++||+.|..|++|||.+. ..|+||++||..||+||+.|+.
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 334556899999999999999999999999999731 2699999999999999999973
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.42 E-value=4.6e-14 Score=108.04 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=48.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHccCCC-CcCCCC-CccchHHHHHHHHHHHHHHHHHHH
Q 036531 123 NQRMTHIAVERNRRKQMNEYLSVLRSLMPD-SYVQRG-DQASIIGGAINFVKELEQRLQSLG 182 (317)
Q Consensus 123 ~~~~~h~~~ER~RR~~mn~~~~~LrslvP~-~~~~k~-dKasiL~~ai~YIk~Lq~~v~~L~ 182 (317)
.+|..|+..||+||..||+.|..||.+||. ....|. .|++||..||+||+.||+++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999999994 213444 688899999999999999998765
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.34 E-value=7.9e-13 Score=99.09 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=52.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHH
Q 036531 122 ENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQ 179 (317)
Q Consensus 122 ~~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~ 179 (317)
..+|..|+..||+|+..||+.|..||.+||.....|.+|+.||..||+||..|++.++
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3468999999999999999999999999997545789999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.23 E-value=1.1e-11 Score=90.59 Aligned_cols=56 Identities=30% Similarity=0.349 Sum_probs=50.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCC-cCCCCCccchHHHHHHHHHHHHHHHH
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS-YVQRGDQASIIGGAINFVKELEQRLQ 179 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasiL~~ai~YIk~Lq~~v~ 179 (317)
+|..|+..||+|+..||+.|..||.+||.. ...|..|+.||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999973 24688999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=8.7e-10 Score=105.61 Aligned_cols=54 Identities=22% Similarity=0.514 Sum_probs=42.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHH
Q 036531 123 NQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQR 177 (317)
Q Consensus 123 ~~~~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~ 177 (317)
.+|.+|+.+||+||++||+.|..|++|||.. ..|+||++||..||+||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~-~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence 3478899999999999999999999999943 68999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.75 E-value=6.1e-09 Score=100.90 Aligned_cols=53 Identities=28% Similarity=0.520 Sum_probs=47.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHccCCCC--cCCCCCccchHHHHHHHHHHHHH
Q 036531 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS--YVQRGDQASIIGGAINFVKELEQ 176 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasiL~~ai~YIk~Lq~ 176 (317)
+|.+|+.+||+||++||+.|..|++|||.+ ...|+||++||..||+|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 378899999999999999999999999941 15799999999999999999984
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=3.4e-09 Score=78.88 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCC-cCCCCCccchHHHHHHHHHHHHH
Q 036531 130 AVERNRRKQMNEYLSVLRSLMPDS-YVQRGDQASIIGGAINFVKELEQ 176 (317)
Q Consensus 130 ~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasiL~~ai~YIk~Lq~ 176 (317)
..||+|+..||+.|..||.+||.. ...|..|+.||.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 348999999999999999999972 24688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.44 E-value=3.5e-07 Score=70.56 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHccCCCC--cCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 036531 136 RKQMNEYLSVLRSLMPDS--YVQRGDQASIIGGAINFVKELEQRLQSLGARKEI 187 (317)
Q Consensus 136 R~~mn~~~~~LrslvP~~--~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~ 187 (317)
|..||++|..|..|||.+ ...|.+|.+||..|++||++||+.++.+.+....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999973 2357899999999999999999888877655443
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.21 E-value=1.9e-06 Score=68.42 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHccCCCC-cCCCCCccchHHHHHHHHHHHHHHHHH
Q 036531 132 ERNRRKQMNEYLSVLRSLMPDS-YVQRGDQASIIGGAINFVKELEQRLQS 180 (317)
Q Consensus 132 ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasiL~~ai~YIk~Lq~~v~~ 180 (317)
||+|=..||+.|..||.+||.. ..+|..|..+|.-||+||..|++.++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999972 356899999999999999999987754
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.53 E-value=0.0015 Score=49.51 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=58.0
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
.+.|.|.|+++||+|.+|...|-+.|..|++++....++.+...+.+.+.+. ...++|.++|.++-...
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~L~~~~~~~ 73 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK---QDFTYLRNEFEAFGQTL 73 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC---CCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC---CCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999888887777777777653 25788999888776553
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.84 E-value=0.0066 Score=52.54 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGR 309 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~ 309 (317)
.+.|.|.|+++||++.+|...|.++|+.|+.+++.+..+.+...+.+.... ...++|+++|.++..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999988887666566665432 1467777777776654
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.46 E-value=0.006 Score=45.43 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=41.7
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEec
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVE 288 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~ 288 (317)
.+.|+|.+.++||+|.+|...|.+.|+.|.++++...++.+...|.+.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 36788999999999999999999999999999998876644456666653
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.24 E-value=0.022 Score=49.72 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD------EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~------~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
.+.|.|.|+++||++.+|-..|-++|+.|+.+...+.+ ++++..+.+.+.+ .. . ++|+++|..+..++
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~-~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PL-Y-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GG-H-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Cc-c-HHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999999876 4555555555542 12 4 78888888776665
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.24 E-value=0.017 Score=50.32 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=42.8
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEec
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVE 288 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~ 288 (317)
.+.|.|.|+++||++..|...|.++|+.|+.+++.+..+.+...+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 47899999999999999999999999999999999887755446666543
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.88 E-value=0.07 Score=45.93 Aligned_cols=70 Identities=9% Similarity=0.093 Sum_probs=55.0
Q ss_pred EEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--------CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 239 HANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--------EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 239 ~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--------~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
.+.|.|.|+++||++.+|...|-++|+.|..+...+.+ +.++..+.+.+.++ . ..++|+++|..+..++
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~--~-~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG--C-NLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT--S-CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCC--C-CHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999988764 24444555554432 2 5789999998887765
Q ss_pred H
Q 036531 311 Q 311 (317)
Q Consensus 311 ~ 311 (317)
.
T Consensus 170 ~ 170 (192)
T 1u8s_A 170 D 170 (192)
T ss_dssp T
T ss_pred C
Confidence 3
No 25
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.55 E-value=0.38 Score=44.69 Aligned_cols=72 Identities=8% Similarity=0.015 Sum_probs=54.7
Q ss_pred CCEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 237 ESHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 237 e~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
...+.|.|.|++++|+..+|-..|-++|+.|+.++..+ ..+.++--+.+.+++. . .+.+++++++..+-.++
T Consensus 4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~-~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-V-IPLASLRTGFGVIAAKF 77 (288)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-C-CCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-C-CCHHHHHHHHHHHHHHc
Confidence 34688999999999999999999999999999999863 3565554445555443 1 25788888887765544
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=93.42 E-value=0.3 Score=46.68 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=54.7
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
..+.|.|.|++|||+...|...|-++|..|+.++-...++.++-.+.+.+.+.. .+.++|.++|..+-.++
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 81 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV--ADGPALRHDVEAAIRKV 81 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH--HTSHHHHHHHHHHHHHT
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc--CCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999999888876655555554321 12467777776655443
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=93.16 E-value=0.49 Score=44.34 Aligned_cols=71 Identities=13% Similarity=0.019 Sum_probs=53.9
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
..+.|.|.|+++||+..+|-..|-++|+.|+.++-... .+.++--+.+..++. . .+.+++++++..+-.++
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~-~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-P-FDLDGFREAFTPIAEEF 93 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-S-SCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-C-CCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999998865 465444344443322 1 35788998887776554
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=92.80 E-value=0.5 Score=43.86 Aligned_cols=70 Identities=6% Similarity=-0.044 Sum_probs=52.7
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
..+.|.|.|+++||+..+|-..|-++|+.|+.++-.+ ..+.++--+.+..++ . .+.+++++++..+-.++
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~-~~~~~L~~~f~~la~~l 78 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--D-FDEAGFRAGLAERSEAF 78 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--S-CCHHHHHHHHHHHHGGG
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--C-CCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999874 345544444444433 2 36788888887664443
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=92.46 E-value=0.95 Score=42.11 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=52.4
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEec--CCCCCCCHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVKVE--DDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~Kv~--e~~~~~s~eeI~~aL~~il~~i 310 (317)
..+.|.|.|++++|+..+|-..|-++|+.|+.++-.+ ..+.++--+.+..+ + .. .+.+++++++..+-.++
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~-~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDA-DA-LRVDALRREFEPIAERF 83 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC------CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcc-cC-CCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999884 34554433333333 2 12 25788888887765554
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=92.01 E-value=0.21 Score=42.85 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=47.4
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
..|.|...++||+|.+|...|...|+.|.++++.... +....+|.+. . + .. ..++|.+.|+++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-d-~~-~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-D-EK-VLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-C-HH-HHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-c-HH-HHHHHHHHHcCCC
Confidence 4688889999999999999999999999999997654 5555566655 2 2 11 2466666666554
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=91.60 E-value=0.5 Score=38.87 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=32.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA 275 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~ 275 (317)
.|+|.|.+|+|+|.+|+.+|-+.++++..+++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 58899999999999999999999999999999766
No 32
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=90.57 E-value=0.4 Score=42.26 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=50.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA-D-EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
..|.|..+++||.|.+|...|...|+.|.+..+... + +....+|.+.-.+ . ..++|.+.|++++.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e---~-~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD---K-TIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT---T-HHHHHHHHHTTSTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH---H-HHHHHHHHhcCcCc
Confidence 578888899999999999999999999999999744 3 5555666665332 2 36888888877543
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=90.47 E-value=0.21 Score=42.95 Aligned_cols=65 Identities=9% Similarity=0.131 Sum_probs=48.5
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD--EIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~--~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
..|.|...++||.|.+|...|...|+.|.++++.... +....+|.+.- + .. ..++|.+.|+++.+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~-d--~~-~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-P--DE-IVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-C--HH-HHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec-c--HH-HHHHHHHHhcCCCC
Confidence 4688889999999999999999999999999997543 55556666652 2 11 35667776666543
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=89.34 E-value=1.3 Score=41.01 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=45.8
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTT--ADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst--~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
..+.|.|.|++++|+..+|-..|-++|+.|+.++..+ ..+.++--+.+..+. . ..+++++++..+-
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~-~~~~L~~~f~~la 73 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---A-GVNDFNSAFGKVV 73 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-------CHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---C-CHHHHHHHHHHHH
Confidence 4588999999999999999999999999999999864 345444333333321 1 2346666665443
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=89.28 E-value=0.74 Score=41.41 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=42.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTAD-----EIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~-----~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
+.|.|.+.+|+|+|.+|+..|-+.+..|.+.+..... +..... +++.+. ..+++-+.|.+
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~----~Le~LL~kLrk 69 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG----DFEKILERVKT 69 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS----CHHHHHHHHHT
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC----CHHHHHHHHhC
Confidence 6788999999999999999999999999999998863 444333 777543 34666665543
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=76.85 E-value=14 Score=29.53 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=38.8
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 242 LKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 242 IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
|-+..+.+||.+.+++++|.+.|+.|...-++..++.....| +.+ ..+...++|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~~------d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RPS------NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EES------CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--EeC------CHHHHHHHHHH
Confidence 455567999999999999999999997655543344443333 332 35666777765
No 37
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=70.33 E-value=44 Score=31.40 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 248 RRPKQLLKLVSGLQSMRLTILHFNVTTADEI-VLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 248 ~rpglL~~Il~aLe~L~L~Vv~anvst~~~~-vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
++||.|.++|..|...|+.......-...+. --|.|-+.++.. . .-..++++|.++-
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~-~d~~v~~AL~~L~ 274 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA--P-WEERFRDALVEIA 274 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC--T-TSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC--c-CCHHHHHHHHHHH
Confidence 5899999999999999999999999887664 458999998654 2 2256676666653
No 38
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=70.13 E-value=16 Score=33.62 Aligned_cols=63 Identities=6% Similarity=0.131 Sum_probs=46.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
.|-+..+++||.|.++|..|...|+.+.....-...+ ..-|.|-+.++.. . .-+.++++|.++
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~--~-~d~~v~~aL~~L 265 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH--R-EDQNVHNALENL 265 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC--T-TSHHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC--C-CcHHHHHHHHHH
Confidence 3444446899999999999999999999999987754 3458888888754 2 124566655554
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=65.85 E-value=34 Score=27.22 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=30.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 036531 241 NLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE 277 (317)
Q Consensus 241 ~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~ 277 (317)
.|.|..+++||.|.+|...|.+.|+.|....+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 5667778999999999999999999998877654433
No 40
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=65.67 E-value=22 Score=32.42 Aligned_cols=64 Identities=13% Similarity=0.231 Sum_probs=47.5
Q ss_pred EEEEEEEe---CCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 239 HANLKIRS---KRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 239 ~~~IkI~c---~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
...|-+.. +++||.|.++|..|...|+.+.....-...+ .--|.|-+.++ . . .-+.++++|.++
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~--~-~d~~v~~aL~~L 253 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S--A-ITTDIKKVIAIL 253 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C--C-SCHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c--C-CcHHHHHHHHHH
Confidence 34444555 6899999999999999999999999987654 34488888887 3 2 225566666555
No 41
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=64.92 E-value=25 Score=32.84 Aligned_cols=64 Identities=13% Similarity=0.274 Sum_probs=47.0
Q ss_pred EEEEEEeC-CCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 240 ANLKIRSK-RRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 240 ~~IkI~c~-~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
..|-+..+ ++||.|.++|..|...|+.+.....-...+ .--|.|-+.++.. . .-+.++++|.++
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~-~d~~v~~aL~~L 267 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH--A-TDSRVADALAGL 267 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC--T-TSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC--C-CcHHHHHHHHHH
Confidence 45555564 799999999999999999999999887644 3348888888644 2 224566666654
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=62.49 E-value=30 Score=28.56 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=31.9
Q ss_pred EEEeCCEEEEEEEeCC---CCChHHHHHHHHHhCCceEEEEE
Q 036531 233 VNMVESHANLKIRSKR---RPKQLLKLVSGLQSMRLTILHFN 271 (317)
Q Consensus 233 V~~~e~~~~IkI~c~~---rpglL~~Il~aLe~L~L~Vv~an 271 (317)
|...++-+.|.|.... +||.+.+++.+|.+.|+.|....
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 3444566788888865 88999999999999999998854
No 43
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=60.80 E-value=37 Score=27.99 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=35.6
Q ss_pred EeCCEEEEEEEe-CCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 036531 235 MVESHANLKIRS-KRRPKQLLKLVSGLQSMRLTILHFNVTTA---DEIVLYSLSVK 286 (317)
Q Consensus 235 ~~e~~~~IkI~c-~~rpglL~~Il~aLe~L~L~Vv~anvst~---~~~vl~s~~~K 286 (317)
...+-+.|.|.. +.++|.+.+|+.+|.+.++.|.....+.. ++..-.+|.+.
T Consensus 12 ~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 12 LDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 345566777765 57899999999999999888776654322 23334456554
No 44
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=60.48 E-value=13 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 163 IIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 163 iL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
.+.+--+||++|+++..+|+.-++-+.
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 355677999999999999987766554
No 45
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=58.64 E-value=47 Score=24.32 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhC----CceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 252 QLLKLVSGLQSM----RLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 252 lL~~Il~aLe~L----~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.+.+|.+.|.+. -.+|.++.+-..|...+.++++.+.++-.+....+|...|.+.|
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l 70 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERAL 70 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHH
Confidence 455666666654 47899999988888888899999865532222345555555554
No 46
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=53.40 E-value=12 Score=24.88 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhc
Q 036531 169 NFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 169 ~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
.|+-+|+.++++|+.+...++.+
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 37777888887777777766654
No 47
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=52.81 E-value=48 Score=27.69 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=35.0
Q ss_pred EeCCEEEEEEE-eCCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 036531 235 MVESHANLKIR-SKRRPKQLLKLVSGLQSMRLTILHFNVTTA---DEIVLYSLSVK 286 (317)
Q Consensus 235 ~~e~~~~IkI~-c~~rpglL~~Il~aLe~L~L~Vv~anvst~---~~~vl~s~~~K 286 (317)
...+-+.|.|. .+++||.+.+|+..|.+.++.|.....++. ++..-.+|.+.
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 34566777774 478899999999999999966665544433 22333445554
No 48
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=49.76 E-value=39 Score=27.85 Aligned_cols=52 Identities=10% Similarity=0.248 Sum_probs=35.1
Q ss_pred EeCCEEEEEEE-eCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEE
Q 036531 235 MVESHANLKIR-SKRRPKQLLKLVSGLQSMRLTILHFNVTTA-DEIVLYSLSVK 286 (317)
Q Consensus 235 ~~e~~~~IkI~-c~~rpglL~~Il~aLe~L~L~Vv~anvst~-~~~vl~s~~~K 286 (317)
...+-+.|.|. -+.+||.+.+|+..|.+.|+.|.....+.. ++..-.+|.+.
T Consensus 21 ~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 21 FDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 34556778887 378999999999999999988877654322 34333344443
No 49
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=49.40 E-value=61 Score=27.30 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=44.9
Q ss_pred EEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 233 VNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 233 V~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
|...++-+.|.|... ..||.+.+++++|.+.++.|.-.+ +.+- .+++-+++. ..+...++||+.+
T Consensus 90 v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei----~Is~vV~~~----d~~~Av~aLH~~f 157 (181)
T 3s1t_A 90 LLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEI----RISVLCRDT----ELDKAVVALHEAF 157 (181)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETT----EEEEEEEGG----GHHHHHHHHHHHH
T ss_pred EEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCC----EEEEEEeHH----HHHHHHHHHHHHH
Confidence 444466678887764 688999999999999999988877 2233 233333322 3567777887776
No 50
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.13 E-value=14 Score=25.83 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhh
Q 036531 168 INFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 168 i~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
-.||..|+++++.|+..+..++.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999988887764
No 51
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=48.02 E-value=56 Score=24.96 Aligned_cols=57 Identities=4% Similarity=0.121 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhCC--ceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 252 QLLKLVSGLQSMR--LTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 252 lL~~Il~aLe~L~--L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
.+.+|.+.|.+.. ..|.++.+-..|..++.++++.+...-.+..+.+|...|.+.|.
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~ 69 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEML 69 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4566777777764 77888888888887788999998655322223356666655543
No 52
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.99 E-value=12 Score=26.58 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhh
Q 036531 168 INFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 168 i~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
-.||..|+++|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999888764
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=46.68 E-value=64 Score=26.48 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=43.9
Q ss_pred EEEEeCCEEEEEEEeCC---CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 232 EVNMVESHANLKIRSKR---RPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 232 eV~~~e~~~~IkI~c~~---rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.|...++-+.|.|.... .||.+.+++++|.+.|+.|.-.+ +..-. .++.+. +. ..+...++|++.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~--is~vv~--~~----d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVR--ISVIIP--AE----YAEAALRAVHQAF 156 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSE--EEEEEE--GG----GHHHHHHHHHHHT
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCE--EEEEEe--HH----HHHHHHHHHHHHH
Confidence 44455677888888864 89999999999999999995554 33322 233333 22 3566666776653
No 54
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=46.16 E-value=78 Score=26.36 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=43.9
Q ss_pred EEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 233 VNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 233 V~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
|...++-+.|.|... ..||.+.+++.+|.+.|+.|.-.+ +..-.+ +|.+ ++. ..+...++|++.+
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV--~~~----d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLI--RED----DLDAAARALHEQF 156 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEE--EGG----GHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEE--eHH----HHHHHHHHHHHHH
Confidence 444567788888875 577999999999999999998754 333321 2333 221 3566677777665
No 55
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=45.20 E-value=99 Score=24.10 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=41.7
Q ss_pred EEEEeCCEEEEEEEeCCCC---ChHHHHHHHHHh-CCce-EEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 232 EVNMVESHANLKIRSKRRP---KQLLKLVSGLQS-MRLT-ILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 232 eV~~~e~~~~IkI~c~~rp---glL~~Il~aLe~-L~L~-Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
||+..+++-+.-|...+.+ .-=.++|+.|.+ |+|. =.-.+++..+. .++.+|....+..++.++++++-.+
T Consensus 2 ev~~~~deeygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~g~----aVTFrV~~N~~n~taadVA~~a~~~ 77 (99)
T 4hti_A 2 EVQPSEEEARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGP----AVTFKVSANVQNVTTEDVEKATVDN 77 (99)
T ss_dssp --------CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEETT----EEEEEECCCTTCCCHHHHHHHHHHT
T ss_pred ccccCCcceeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhheeeeeecCc----eEEEEeccCCCCCCHHHHHHHHHHH
Confidence 5555555533334443333 334566666654 4554 22455566665 3444555555555789999999998
Q ss_pred HHHHHhh
Q 036531 307 LGRIQED 313 (317)
Q Consensus 307 l~~i~~~ 313 (317)
-..|+.+
T Consensus 78 K~~Le~~ 84 (99)
T 4hti_A 78 KDKLEET 84 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888876
No 56
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=45.08 E-value=1.4e+02 Score=25.06 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=34.7
Q ss_pred eCCEEEEEEEe-CCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 036531 236 VESHANLKIRS-KRRPKQLLKLVSGLQSMRLTILHFNVTTA---DEIVLYSLSVK 286 (317)
Q Consensus 236 ~e~~~~IkI~c-~~rpglL~~Il~aLe~L~L~Vv~anvst~---~~~vl~s~~~K 286 (317)
..+-+.|.|.. +.++|.+.+|+..|.+.++.|....-+.. ++..-.+|.+.
T Consensus 13 ~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 13 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 34556666653 57899999999999999988876653322 34444556554
No 57
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.71 E-value=29 Score=24.51 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 036531 132 ERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 132 ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
||++|.....+.++.++ +. .-.+|+..|+.+++.|+.+...+..
T Consensus 1 Ekr~rrrerNR~AA~rc--------R~-------rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC--------RN-------RRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH--------HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH--------HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888888776 11 2346666777777776666665543
No 58
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.57 E-value=21 Score=24.76 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhc
Q 036531 169 NFVKELEQRLQSLGARKEIKENS 191 (317)
Q Consensus 169 ~YIk~Lq~~v~~L~~~~~~~~~~ 191 (317)
.||.+|+.+|..|+.+...+...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888877766543
No 59
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=42.14 E-value=26 Score=26.82 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=30.0
Q ss_pred EEEEEEEeCCC--CChHHHHHHHHHhCCceEEEEEEEe
Q 036531 239 HANLKIRSKRR--PKQLLKLVSGLQSMRLTILHFNVTT 274 (317)
Q Consensus 239 ~~~IkI~c~~r--pglL~~Il~aLe~L~L~Vv~anvst 274 (317)
.+.|.|.|... ..+...|++.|+..++.+..+.+..
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~ 45 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGP 45 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeec
Confidence 47999999864 4678888999999999999999655
No 60
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=40.93 E-value=1.4e+02 Score=28.42 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=38.5
Q ss_pred EEEeCCEEEEEEE-eCCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 036531 233 VNMVESHANLKIR-SKRRPKQLLKLVSGLQSMRLTILHFNVTTA---DEIVLYSLSVK 286 (317)
Q Consensus 233 V~~~e~~~~IkI~-c~~rpglL~~Il~aLe~L~L~Vv~anvst~---~~~vl~s~~~K 286 (317)
|....+-+.|.|. ...++|.+.+|+..|.+.++.|.....++. ++..-.+|.+.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 3445677888888 578899999999999999999887754333 23333445544
No 61
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=40.35 E-value=1.3e+02 Score=27.92 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=52.3
Q ss_pred CEEEEEEEeCC-CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKR-RPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 238 ~~~~IkI~c~~-rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
.+..+.+..+. +++++.+|...|.++++.+......+....+.+-|++.+.. .+.+++.+++.++....
T Consensus 100 ~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~----~~~~~l~~~l~~l~~~~ 169 (415)
T 3p96_A 100 STHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPP----GADEALRTALNRVSSEE 169 (415)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCT----TCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCC----CCHHHHHHHHHHHhhhc
Confidence 46778888887 88999999999999999998888777544444556666544 24678888888876654
No 62
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=37.98 E-value=32 Score=33.66 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=46.2
Q ss_pred EEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 240 ANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTADE-IVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 240 ~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~~~-~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
..|-+..+++||.|.++|..|...|+.+.+...-...+ .--|.|-+.++ . . .-+.++++|.++-
T Consensus 35 TSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h--~-~d~~v~~AL~eL~ 99 (429)
T 1phz_A 35 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-K--R-TKPVLGSIIKSLR 99 (429)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-G--G-GHHHHHHHHHHHH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-e--C-CCHHHHHHHHHHH
Confidence 34444456889999999999999999999999887643 34588888876 3 2 2234666665553
No 63
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=37.25 E-value=1.1e+02 Score=27.10 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhCC--ceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 252 QLLKLVSGLQSMR--LTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 252 lL~~Il~aLe~L~--L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
..-+|.+.+++.. .+|.+..+-..+...+..+++.++++..+...++|.+.+++.+.
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~ 265 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAIL 265 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4667777777764 78999998888887777899998776433345566666666654
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.77 E-value=42 Score=25.34 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 036531 164 IGGAINFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 164 L~~ai~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
|..||+-|.-||.++++|+.+...+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988776543
No 65
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=35.61 E-value=56 Score=25.75 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=44.6
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhC---CceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSM---RLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLGRI 310 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L---~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~~i 310 (317)
..+.+||.....+++...|+++++.+ ..++ ..+-|..|..+-+++.+.+. +.+++ .+|.+.|..+
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~------S~eQv-~aiY~~L~~~ 102 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT------HIEQV-ETLYEELGKI 102 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS------SHHHH-HHHHHHHSCS
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC------CHHHH-HHHHHHHhcC
Confidence 35788999999999999999999987 6776 55767777765556655542 34433 4555555433
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.52 E-value=30 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhH
Q 036531 169 NFVKELEQRLQSLGARK 185 (317)
Q Consensus 169 ~YIk~Lq~~v~~L~~~~ 185 (317)
.||++|+.+|.+|+...
T Consensus 29 ~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 29 DHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554433
No 67
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.51 E-value=55 Score=21.10 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 036531 158 GDQASIIGGAINFVKELEQRLQSLGARKEIK 188 (317)
Q Consensus 158 ~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~ 188 (317)
+..+..|+++-+-|..|+.+++.|+.++-.+
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446679999999999999999999887653
No 68
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=32.98 E-value=1.9e+02 Score=28.39 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=44.1
Q ss_pred CEEEEEEEeCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEecCCCCCCCHHHHHHHHHH
Q 036531 238 SHANLKIRSKRRPKQLLKLVSGLQSMRLTILHFNVTTA--DEIVLYSLSVKVEDDCNLTSGDDIATAVYQ 305 (317)
Q Consensus 238 ~~~~IkI~c~~rpglL~~Il~aLe~L~L~Vv~anvst~--~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~ 305 (317)
....|-+.-.++||.+-+|...|-+.++.|-+.++... ++..+..|. +.+. . .+++.+.|.+
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~--vd~~--~--~~~~l~~l~~ 516 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLR--LDQD--V--PDDVRTAIAA 516 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEE--ESSC--C--CHHHHHHHHH
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEE--ECCC--C--CHHHHHHHhc
Confidence 34566667789999999999999999999999999875 455444444 4332 2 2555555554
No 69
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=32.97 E-value=1.6e+02 Score=25.31 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=37.2
Q ss_pred EeCCEEEEEEE-eCCCCChHHHHHHHHHhCCceEEEEE--EEee-CCeEEEEEEEEe
Q 036531 235 MVESHANLKIR-SKRRPKQLLKLVSGLQSMRLTILHFN--VTTA-DEIVLYSLSVKV 287 (317)
Q Consensus 235 ~~e~~~~IkI~-c~~rpglL~~Il~aLe~L~L~Vv~an--vst~-~~~vl~s~~~Kv 287 (317)
...+.+.|.|. .+.+||.+.+|+.+|.+.++.|-... ++.. ++....+|.+.-
T Consensus 31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 34566777775 47899999999999999997766653 3333 345556777663
No 70
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=32.10 E-value=99 Score=26.33 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=39.8
Q ss_pred cCeEEEEEeCCEEEEEEEeCCCC------ChHHHHHHHHHhCCceEEEEEEEee
Q 036531 228 IADIEVNMVESHANLKIRSKRRP------KQLLKLVSGLQSMRLTILHFNVTTA 275 (317)
Q Consensus 228 ~~~VeV~~~e~~~~IkI~c~~rp------glL~~Il~aLe~L~L~Vv~anvst~ 275 (317)
..+|.|++.++.+.|.+...+.. ..+.+|-+.|.+-||.+..++|+.-
T Consensus 100 ~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 100 QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 35777778899999999987642 4588889999999999999999864
No 71
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.49 E-value=21 Score=25.64 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhh
Q 036531 168 INFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 168 i~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
-.||..|+++|..||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998776653
No 72
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=31.26 E-value=1.9e+02 Score=27.43 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=44.2
Q ss_pred EEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 233 VNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 233 V~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
|.+.++-+.|.|... ..||.+.+++++|.+.++.|.-.+ +.... +++-+++. ..+...++||+.+
T Consensus 338 v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~----is~vV~~~----d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIR----ISVLIRED----DLDAAARALHEQF 405 (421)
T ss_dssp EEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTE----EEEEEEGG----GHHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCe----EEEEEeHH----HHHHHHHHHHHHH
Confidence 444566678888874 588999999999999999998543 33432 33333322 3567777777765
No 73
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.56 E-value=64 Score=19.14 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=15.1
Q ss_pred CCccchHHHHHHHHHHHHHH
Q 036531 158 GDQASIIGGAINFVKELEQR 177 (317)
Q Consensus 158 ~dKasiL~~ai~YIk~Lq~~ 177 (317)
+....+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45667888999999876653
No 74
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.23 E-value=1.1e+02 Score=23.27 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 135 RRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 135 RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
=|++..++|..||.=+ ..=|..-++-|+.||..|+.++..+..+.
T Consensus 34 frqkekEqL~~LKkkl----------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 34 FRARAKEQLAALKKHK----------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3777888888888633 22355566777777777777777666654
No 75
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.92 E-value=48 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhh
Q 036531 168 INFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 168 i~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
-.|+..|+.+++.|+.+...+..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655543
No 76
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.48 E-value=46 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhh
Q 036531 168 INFVKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 168 i~YIk~Lq~~v~~L~~~~~~~~~ 190 (317)
-.||..|+++++.|+..+..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 46999999999999998887653
No 77
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=27.47 E-value=94 Score=24.99 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHhCC--ceEEEEEEEeeC-CeEEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 036531 249 RPKQLLKLVSGLQSMR--LTILHFNVTTAD-EIVLYSLSVKVEDDCNLTSGDDIATAVYQL 306 (317)
Q Consensus 249 rpglL~~Il~aLe~L~--L~Vv~anvst~~-~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~i 306 (317)
..|+|.+++..+..+| ++|+.++|-... +....-+.+..++.. ..++|...|+++
T Consensus 14 DSgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e---~L~~Il~~L~~l 71 (118)
T 3mgj_A 14 DSLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDER---HVDEILNELRDL 71 (118)
T ss_dssp TSSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHH---HHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHH---HHHHHHHHHHHc
Confidence 4689999999999987 999999997654 444444555554332 234555555443
No 78
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.34 E-value=52 Score=20.97 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhHHhhh
Q 036531 171 VKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~~~ 189 (317)
+++|+.+|++|-.++..++
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4566666666665555544
No 79
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=26.60 E-value=2.6e+02 Score=27.02 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=44.3
Q ss_pred eCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 036531 236 VESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLL 307 (317)
Q Consensus 236 ~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il 307 (317)
.++-+.|.|... ..||+..+++++|.+.++.|.-.+-.+.+-. +++-|++. ..+...++||+.+
T Consensus 371 ~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~----Is~vV~~~----d~~~Av~aLH~~f 437 (446)
T 3tvi_A 371 HPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEIN----VIVGVETV----DFEKAVKSIYNAF 437 (446)
T ss_dssp EEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTE----EEEEEEGG----GHHHHHHHHHHHH
T ss_pred eCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCce----EEEEEcHH----HHHHHHHHHHHHH
Confidence 345568888764 5899999999999999999988775555543 33334332 3566667777654
No 80
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.87 E-value=55 Score=22.84 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhh
Q 036531 168 INFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 168 i~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
-+||..|+.++..|+.+...+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666555544
No 81
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=25.62 E-value=79 Score=24.45 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Q 036531 163 IIGGAINFVKELEQRLQSLGARK 185 (317)
Q Consensus 163 iL~~ai~YIk~Lq~~v~~L~~~~ 185 (317)
..+.|=+||..|.++|+-|+...
T Consensus 64 f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 64 FDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhHHHHHHHHHhHHHH
Confidence 35677889999999999888654
No 82
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.25 E-value=1.4e+02 Score=24.05 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHh
Q 036531 131 VERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEI 187 (317)
Q Consensus 131 ~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~ 187 (317)
.|++-=.++|++|..+|.=++. ....+...++..-.+-|..|..+|+.|+.....
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaa--a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQAD--LSLVEAADKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH--SCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667889999999887776 455556778888888888899888888876553
No 83
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.17 E-value=59 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.497 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHccCCC
Q 036531 130 AVERNRRKQMNEYLSVLRSLMPD 152 (317)
Q Consensus 130 ~~ER~RR~~mn~~~~~LrslvP~ 152 (317)
.++|-+|...++-+..|+.+.|.
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 46888999999999999999998
No 84
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.99 E-value=1.2e+02 Score=23.21 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=27.1
Q ss_pred CCEEEEEEEeC-----C-CCChHHHHHHHHHhCCceEEEEEEEee
Q 036531 237 ESHANLKIRSK-----R-RPKQLLKLVSGLQSMRLTILHFNVTTA 275 (317)
Q Consensus 237 e~~~~IkI~c~-----~-rpglL~~Il~aLe~L~L~Vv~anvst~ 275 (317)
+..++|.++.. . -+.++..|++.|..+| +|+.+++...
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d 50 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVED 50 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecC
Confidence 34566666542 1 2257899999999999 8998887653
No 85
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=23.40 E-value=96 Score=26.46 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=38.8
Q ss_pred hhhhhhHHHHHHHHH-HHHHHHHHHccCCCCcCCCCCccchHHHHHHHHHHHHHHHHHHHHhHHhh
Q 036531 124 QRMTHIAVERNRRKQ-MNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQSLGARKEIK 188 (317)
Q Consensus 124 ~~~~h~~~ER~RR~~-mn~~~~~LrslvP~~~~~k~dKasiL~~ai~YIk~Lq~~v~~L~~~~~~~ 188 (317)
.+......||.++.. -.+++..||..+-. .+-.|+. ...=.||+-|.+++..++.+....
T Consensus 37 ~~l~~~e~~r~k~~~h~~~k~~qlre~~d~--gtt~~~i---~~m~~yI~llrErea~lEqkVaeq 97 (169)
T 3k29_A 37 EKLRERESERDKVKNHYMQKIRQLREQLDD--GTTSDAI---LKMKAYIKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776654 45668889998865 2333333 334468888888888887666543
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.23 E-value=66 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHhh
Q 036531 173 ELEQRLQSLGARKEIK 188 (317)
Q Consensus 173 ~Lq~~v~~L~~~~~~~ 188 (317)
.|+.++..|..++..+
T Consensus 41 ~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 41 ALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555554443
No 87
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.05 E-value=64 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhh
Q 036531 168 INFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 168 i~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
-.||..|+++++.|+..+..+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999888764
No 88
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.36 E-value=76 Score=19.84 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHHhhhh
Q 036531 171 VKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~~~~ 190 (317)
+.+|+.+|++|-.++..++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~ 21 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHH
Confidence 45667777766666655543
No 89
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.36 E-value=76 Score=19.84 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhHHhhh
Q 036531 171 VKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~~~ 189 (317)
+++|+.+|++|-.++..++
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4566666666655555444
No 90
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=22.36 E-value=1.4e+02 Score=24.17 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=40.7
Q ss_pred EEEEeCCEEEEEEEeC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 036531 232 EVNMVESHANLKIRSK---RRPKQLLKLVSGLQSMRLTILHFNVTTADEIVLYSLSVKVEDDCNLTSGDDIATAVYQLLG 308 (317)
Q Consensus 232 eV~~~e~~~~IkI~c~---~rpglL~~Il~aLe~L~L~Vv~anvst~~~~vl~s~~~Kv~e~~~~~s~eeI~~aL~~il~ 308 (317)
+|+..++-+.|.|... ..||.+.+++.+|. ++.|.-.+-.+.+-. +++-+++. ..+...++||+.+.
T Consensus 81 ~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~----is~vv~~~----d~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 81 DVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYN----VSVLVKAE----DKKKALIALSNKLF 150 (157)
T ss_dssp EEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSC----EEEEEEGG----GHHHHHHHHHHHHH
T ss_pred eEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCE----EEEEEcHH----HHHHHHHHHHHHHh
Confidence 3444455578887764 47899999999999 777766654333332 33333322 35677777777653
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.17 E-value=72 Score=22.10 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhh
Q 036531 169 NFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 169 ~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
.|+..|+.+++.|+.+...+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444
No 92
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.58 E-value=93 Score=21.44 Aligned_cols=28 Identities=7% Similarity=0.022 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 036531 162 SIIGGAINFVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 162 siL~~ai~YIk~Lq~~v~~L~~~~~~~~ 189 (317)
..|+..++-+..|.+++.+|+.++..++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888889999999988887765
No 93
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.52 E-value=61 Score=19.05 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhHHhhhh
Q 036531 171 VKELEQRLQSLGARKEIKEN 190 (317)
Q Consensus 171 Ik~Lq~~v~~L~~~~~~~~~ 190 (317)
|+.|+++...|+.+...++-
T Consensus 2 irrlkqknarlkqeiaaley 21 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEY 21 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHH
Confidence 55677777777777766553
No 94
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.03 E-value=77 Score=18.46 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHhhh
Q 036531 170 FVKELEQRLQSLGARKEIKE 189 (317)
Q Consensus 170 YIk~Lq~~v~~L~~~~~~~~ 189 (317)
|+-+|+.++-+|+.+...+.
T Consensus 1 yvyqlkdevgelkgevralk 20 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALK 20 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHH
Confidence 45566666666666555443
Done!