Query 036534
Match_columns 237
No_of_seqs 148 out of 322
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 2.6E-50 5.6E-55 317.9 10.3 101 34-135 1-101 (101)
2 COG3416 Uncharacterized protei 84.5 2.8 6.2E-05 38.3 6.2 66 75-140 11-76 (233)
3 PF09849 DUF2076: Uncharacteri 79.1 8.1 0.00018 35.5 7.2 62 76-137 12-73 (247)
4 PF05308 Mito_fiss_reg: Mitoch 70.5 27 0.00058 32.2 8.2 27 119-145 122-148 (253)
5 PRK10265 chaperone-modulator p 65.0 11 0.00025 29.5 4.1 32 108-139 67-98 (101)
6 PF09006 Surfac_D-trimer: Lung 60.6 13 0.00028 26.5 3.3 26 114-139 1-26 (46)
7 PF13334 DUF4094: Domain of un 55.8 11 0.00024 29.8 2.6 24 111-134 72-95 (95)
8 PF07106 TBPIP: Tat binding pr 53.7 12 0.00027 31.2 2.7 79 61-139 20-106 (169)
9 PF06305 DUF1049: Protein of u 50.6 36 0.00078 24.0 4.4 26 113-138 42-67 (68)
10 PF11333 DUF3135: Protein of u 49.7 56 0.0012 25.4 5.6 65 60-128 16-82 (83)
11 cd01111 HTH_MerD Helix-Turn-He 48.0 79 0.0017 24.9 6.3 29 110-138 78-106 (107)
12 PLN03138 Protein TOC75; Provis 46.1 15 0.00032 39.0 2.5 17 200-216 298-314 (796)
13 KOG4552 Vitamin-D-receptor int 45.8 33 0.00071 31.8 4.3 65 66-138 47-118 (272)
14 PF06698 DUF1192: Protein of u 44.7 39 0.00084 25.0 3.8 24 114-137 23-46 (59)
15 PHA00370 III attachment protei 43.9 20 0.00044 33.9 2.7 24 101-124 195-218 (297)
16 cd04766 HTH_HspR Helix-Turn-He 42.6 45 0.00098 25.1 4.1 25 112-136 65-89 (91)
17 PF12097 DUF3573: Protein of u 41.8 29 0.00063 34.0 3.5 22 113-134 43-64 (383)
18 COG5509 Uncharacterized small 41.5 44 0.00096 25.3 3.7 24 114-137 27-50 (65)
19 PF08158 NUC130_3NT: NUC130/3N 41.3 23 0.00049 25.4 2.1 37 51-97 5-45 (52)
20 PRK00846 hypothetical protein; 37.4 90 0.0019 24.2 5.0 29 112-140 34-62 (77)
21 PRK04406 hypothetical protein; 37.3 99 0.0021 23.5 5.1 28 112-139 32-59 (75)
22 PF13591 MerR_2: MerR HTH fami 37.2 41 0.00089 25.4 3.1 23 110-132 61-83 (84)
23 PF14071 YlbD_coat: Putative c 36.6 1.1E+02 0.0025 25.7 5.8 43 115-161 80-122 (124)
24 PRK02119 hypothetical protein; 36.5 1.1E+02 0.0024 23.0 5.3 27 113-139 31-57 (73)
25 PRK02793 phi X174 lysis protei 34.2 1.2E+02 0.0026 22.7 5.1 28 113-140 30-57 (72)
26 PF04706 Dickkopf_N: Dickkopf 33.8 24 0.00052 25.3 1.2 16 33-48 21-36 (52)
27 TIGR03602 streptolysinS bacter 33.5 29 0.00064 25.4 1.7 16 8-23 36-51 (56)
28 KOG1655 Protein involved in va 33.0 1E+02 0.0022 28.3 5.3 52 68-139 2-53 (218)
29 PRK00295 hypothetical protein; 32.7 1.5E+02 0.0032 22.0 5.3 28 112-139 26-53 (68)
30 PLN03138 Protein TOC75; Provis 31.6 37 0.0008 36.2 2.7 7 93-99 167-173 (796)
31 PF04102 SlyX: SlyX; InterPro 31.0 67 0.0015 23.6 3.3 27 113-139 26-52 (69)
32 PRK10803 tol-pal system protei 29.8 68 0.0015 29.1 3.8 27 112-138 54-80 (263)
33 PF04977 DivIC: Septum formati 29.7 92 0.002 22.1 3.8 25 114-138 26-50 (80)
34 PF11853 DUF3373: Protein of u 29.6 53 0.0011 33.2 3.3 33 105-138 18-50 (489)
35 PRK00736 hypothetical protein; 29.4 1.9E+02 0.0041 21.4 5.5 27 113-139 27-53 (68)
36 PF10883 DUF2681: Protein of u 29.0 45 0.00099 26.4 2.2 31 114-144 32-62 (87)
37 PF12325 TMF_TATA_bd: TATA ele 28.0 91 0.002 25.7 3.9 31 109-139 13-43 (120)
38 PF15300 INT_SG_DDX_CT_C: INTS 27.5 46 0.00099 25.0 1.9 27 74-100 23-51 (65)
39 PLN02523 galacturonosyltransfe 27.3 1.4E+02 0.0029 31.0 5.7 52 78-134 145-198 (559)
40 PF14282 FlxA: FlxA-like prote 27.0 96 0.0021 24.6 3.8 27 113-139 52-78 (106)
41 PRK00888 ftsB cell division pr 27.0 76 0.0017 25.3 3.2 18 114-131 29-46 (105)
42 PHA00370 III attachment protei 25.4 60 0.0013 30.8 2.6 13 98-110 178-190 (297)
43 PF04728 LPP: Lipoprotein leuc 24.8 1.4E+02 0.0029 22.1 3.9 22 114-135 12-33 (56)
44 PF03461 TRCF: TRCF domain; I 24.8 50 0.0011 25.7 1.7 21 201-221 31-51 (101)
45 PF07334 IFP_35_N: Interferon- 23.4 1.1E+02 0.0023 23.9 3.3 25 114-138 2-26 (76)
46 PF04977 DivIC: Septum formati 23.2 1.4E+02 0.003 21.1 3.7 26 113-138 18-43 (80)
47 PRK10963 hypothetical protein; 23.0 1.7E+02 0.0038 25.8 5.0 56 74-138 6-63 (223)
48 PF08227 DASH_Hsk3: DASH compl 23.0 1.5E+02 0.0032 20.9 3.6 26 113-138 3-28 (45)
49 PF03242 LEA_3: Late embryogen 22.8 30 0.00066 27.5 0.2 20 96-115 58-77 (93)
50 KOG4462 WASP-interacting prote 22.3 65 0.0014 32.0 2.3 13 5-17 55-67 (437)
51 KOG0242 Kinesin-like protein [ 22.0 1.5E+02 0.0032 31.0 4.9 65 71-135 283-368 (675)
52 KOG3915 Transcription regulato 21.7 67 0.0015 33.0 2.3 17 68-84 210-226 (641)
53 cd04772 HTH_TioE_rpt1 First He 21.4 3.1E+02 0.0068 21.1 5.6 24 112-135 76-99 (99)
54 TIGR03021 pilP_fam type IV pil 20.9 4.7E+02 0.01 21.4 6.7 29 111-139 4-34 (119)
55 PRK04325 hypothetical protein; 20.9 2.9E+02 0.0062 20.8 5.1 28 112-139 30-57 (74)
56 KOG3915 Transcription regulato 20.7 77 0.0017 32.6 2.5 7 45-51 173-179 (641)
57 TIGR02209 ftsL_broad cell divi 20.5 1.6E+02 0.0034 21.5 3.6 26 113-138 32-57 (85)
58 PF08657 DASH_Spc34: DASH comp 20.3 1.5E+02 0.0033 27.4 4.2 35 104-138 172-206 (259)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=2.6e-50 Score=317.95 Aligned_cols=101 Identities=57% Similarity=1.030 Sum_probs=99.2
Q ss_pred CChhhHHhhhCCCCCCccCCCCCchhhHHHHHHHHHHhccchHHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHH
Q 036534 34 PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAH 113 (237)
Q Consensus 34 ~CAACK~lRRkC~~~CifAPYFPadq~~~~F~~vHKVFG~SNV~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~ 113 (237)
+|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++|+++|+++|+||+|||++|++||||||+|+
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~ 79 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI 79 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence 69999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036534 114 IFALQQQVVNLQAELSYLQAHL 135 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~L 135 (237)
|+.|+|||+++++||+.++++|
T Consensus 80 i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 80 ISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.47 E-value=2.8 Score=38.32 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred hHHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 036534 75 NVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLEL 140 (237)
Q Consensus 75 NV~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~~~ 140 (237)
|+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+|+.++.
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344456677778999999999999999999999999999999999999999999999888887754
No 3
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=79.06 E-value=8.1 Score=35.45 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=56.3
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 76 VSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 76 V~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
+..-|+.+....|+.-++.||-|+-.|.-|-+|=-+=.|...+.-|++++++|+.|+++|..
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777778999999999999999999999999999999999999999999999999976
No 4
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=70.52 E-value=27 Score=32.19 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCcCCCCCC
Q 036534 119 QQVVNLQAELSYLQAHLATLELPSPPP 145 (237)
Q Consensus 119 ~Qi~~lq~EL~~~q~~La~~~~~q~~~ 145 (237)
++|..||.||+.+|++||.+...|...
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe~~ 148 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQEQS 148 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 678899999999999999997655443
No 5
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=65.04 E-value=11 Score=29.53 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=28.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 108 YGCVAHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 108 yGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
+-.+++|..|-.||..++.|+..++++|..|.
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999999999999999999999998874
No 6
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=60.60 E-value=13 Score=26.54 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 114 IFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
|..|.+|+..|+.+|..+|+-+..|+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999998887764
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=55.79 E-value=11 Score=29.83 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036534 111 VAHIFALQQQVVNLQAELSYLQAH 134 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q~~ 134 (237)
.-.|..|...|..|++||+.+|++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346889999999999999988763
No 8
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.69 E-value=12 Score=31.20 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccchHHHHHhcCCCcChH---HHHHHHHHHHhhcccCCCCcc-----HHHHHHHHHHHHHHHHHHHHHH
Q 036534 61 AAHFAAVHKVFGASNVSKLLLHIPVHKRL---DAVVTICYEAQARLRDPVYGC-----VAHIFALQQQVVNLQAELSYLQ 132 (237)
Q Consensus 61 ~~~F~~vHKVFG~SNV~KmL~~lp~~~R~---dAv~SLvYEA~aR~rDPVyGC-----vG~I~~Lq~Qi~~lq~EL~~~q 132 (237)
..-|.|+|+-||-..|.|.|..|-.+.+. ..=...||=++--.-+-+..- =.-|..|+.++..++.++..++
T Consensus 20 ~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 20 QDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999998654431 122345555443333211111 2346777777777777777777
Q ss_pred HHHhhCc
Q 036534 133 AHLATLE 139 (237)
Q Consensus 133 ~~La~~~ 139 (237)
++|+.+.
T Consensus 100 ~eL~~L~ 106 (169)
T PF07106_consen 100 AELASLS 106 (169)
T ss_pred HHHHHHh
Confidence 7777664
No 9
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=50.63 E-value=36 Score=23.96 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
..+.+++++..++.|++.++.+++..
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677889999999999999888764
No 10
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=49.68 E-value=56 Score=25.42 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhccchHHHHHhcCCCcC--hHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHH
Q 036534 60 GAAHFAAVHKVFGASNVSKLLLHIPVHK--RLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 128 (237)
Q Consensus 60 ~~~~F~~vHKVFG~SNV~KmL~~lp~~~--R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL 128 (237)
.|+.|....+ .-+-.++...|++. |..++.+-|=---.|.++|+.-|+-+...+..++..+...|
T Consensus 16 dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 16 DPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred CHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688876554 55677888898866 45556666666677889999999999999999998887654
No 11
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=48.02 E-value=79 Score=24.93 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 110 CVAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 110 CvG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
|...+..+..+|.+.+.+|+.++++|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888889999999999999988754
No 12
>PLN03138 Protein TOC75; Provisional
Probab=46.08 E-value=15 Score=39.02 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=8.3
Q ss_pred CCCCcHHHHHHHHHhhh
Q 036534 200 FGGGDLQAMARELLHRQ 216 (237)
Q Consensus 200 ~~~~~~q~~a~~~~~r~ 216 (237)
+.-.+|+.....|-..|
T Consensus 298 lN~e~Lq~die~I~~~Y 314 (796)
T PLN03138 298 VSARLLQRIRDRVQKWY 314 (796)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 54555555544444433
No 13
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=45.78 E-value=33 Score=31.85 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=43.4
Q ss_pred HHHHHhccc--hHHHHHhcCCC-cChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHH----HHHHhhC
Q 036534 66 AVHKVFGAS--NVSKLLLHIPV-HKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYL----QAHLATL 138 (237)
Q Consensus 66 ~vHKVFG~S--NV~KmL~~lp~-~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~----q~~La~~ 138 (237)
++-++|-.. -+.+||+-+++ .+|+.+|+.|--+-+.|.+ .|.+||.++...+.-|..+ +++|+.+
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtta~fqA~qKLksi 118 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTTACFQANQKLKSI 118 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555432 35566666664 5689999998666665554 5999999999888777653 4555544
No 14
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=44.71 E-value=39 Score=25.01 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 114 IFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
|-.|+..|..|++|++.++++++.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888764
No 15
>PHA00370 III attachment protein
Probab=43.86 E-value=20 Score=33.89 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=13.0
Q ss_pred hcccCCCCccHHHHHHHHHHHHHH
Q 036534 101 ARLRDPVYGCVAHIFALQQQVVNL 124 (237)
Q Consensus 101 aR~rDPVyGCvG~I~~Lq~Qi~~l 124 (237)
.+..||-.|-.|..-.-..++.+|
T Consensus 195 g~~~d~~~g~sg~~~~~~s~md~l 218 (297)
T PHA00370 195 GGLVDNGGGESGQFAGSNSEMDQL 218 (297)
T ss_pred ccccCCCCcccccccCchhhhhhh
Confidence 455566666555555555555533
No 16
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=42.59 E-value=45 Score=25.06 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLA 136 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La 136 (237)
..|..|..|+..++.||+.++++|.
T Consensus 65 ~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 65 KRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444599999999999999998875
No 17
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=41.83 E-value=29 Score=33.98 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036534 113 HIFALQQQVVNLQAELSYLQAH 134 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~ 134 (237)
.|..||+||.+||+||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988876
No 18
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=41.47 E-value=44 Score=25.32 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 114 IFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
|-.|.+.|..||.|++.++++++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888888888877764
No 19
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=41.26 E-value=23 Score=25.37 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=27.7
Q ss_pred cCCCCCchhhHHHHHHHHHHhccchHHHHHhc----CCCcChHHHHHHHHH
Q 036534 51 FAPYFDSEQGAAHFAAVHKVFGASNVSKLLLH----IPVHKRLDAVVTICY 97 (237)
Q Consensus 51 fAPYFPadq~~~~F~~vHKVFG~SNV~KmL~~----lp~~~R~dAv~SLvY 97 (237)
.++|+|.+ ...|. .-+..+|++ |+++.|...+++|+-
T Consensus 5 va~cYp~~--~~~Fp--------~~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 5 VAHCYPKE--TKDFP--------QELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred cccccHHH--HHHHH--------HHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 57888865 46773 345666665 899999999999985
No 20
>PRK00846 hypothetical protein; Provisional
Probab=37.44 E-value=90 Score=24.17 Aligned_cols=29 Identities=7% Similarity=-0.031 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLEL 140 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~~ 140 (237)
.+|...+.+|..++.+|..+..+|.....
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46777888999999999999999988763
No 21
>PRK04406 hypothetical protein; Provisional
Probab=37.30 E-value=99 Score=23.48 Aligned_cols=28 Identities=11% Similarity=0.322 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
-+|...|++|..++.+|..+..+|....
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577788888999999999988887765
No 22
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=37.24 E-value=41 Score=25.42 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 036534 110 CVAHIFALQQQVVNLQAELSYLQ 132 (237)
Q Consensus 110 CvG~I~~Lq~Qi~~lq~EL~~~q 132 (237)
.+++|.+|-.||..|+.||..++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999998876
No 23
>PF14071 YlbD_coat: Putative coat protein
Probab=36.63 E-value=1.1e+02 Score=25.68 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCCCCCCCCCCccc
Q 036534 115 FALQQQVVNLQAELSYLQAHLATLELPSPPPPPPSQNQMTAPPLSIS 161 (237)
Q Consensus 115 ~~Lq~Qi~~lq~EL~~~q~~La~~~~~q~~~~~~~~~~~~~~~~s~~ 161 (237)
..||.+|..+..-|..+|..|..++.....+. +.....||+++
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~~~~~~~----~~~~~~PFsFr 122 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQGNGQKQS----QRSPEHPFSFR 122 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----CCCCCCCCccC
Confidence 57899999999999999999999987665543 12345666654
No 24
>PRK02119 hypothetical protein; Provisional
Probab=36.47 E-value=1.1e+02 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
+|..-+++|..++.+|..+..+|....
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567778888899999999988888765
No 25
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.22 E-value=1.2e+02 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATLEL 140 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~~~ 140 (237)
+|...|.+|..++.+|..+..+|.....
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5667788888999999999888887753
No 26
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=33.81 E-value=24 Score=25.34 Aligned_cols=16 Identities=25% Similarity=0.764 Sum_probs=15.0
Q ss_pred CCChhhHHhhhCCCCC
Q 036534 33 GPCGACKFLRRKCVPG 48 (237)
Q Consensus 33 ~~CAACK~lRRkC~~~ 48 (237)
+.|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 8999999999999986
No 27
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=33.53 E-value=29 Score=25.39 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=10.3
Q ss_pred cccccCCCCCCCCCCC
Q 036534 8 SGSVGGGGGGGGSSSG 23 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (237)
|-+||||+..+|||.+
T Consensus 36 si~~ggGsaqtgGGs~ 51 (56)
T TIGR03602 36 SIATGGGNAQTGGGAA 51 (56)
T ss_pred EEEecCcccccCCCcc
Confidence 4567887777655444
No 28
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.99 E-value=1e+02 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=36.1
Q ss_pred HHHhccchHHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 68 HKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 68 HKVFG~SNV~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
||+||+.| ...|+..-.++..++=- |. -.+..+|..|.+||...+.+|+..+
T Consensus 2 nRiFG~~k-----~k~p~psL~dai~~v~~----r~-----------dSve~KIskLDaeL~k~~~Qi~k~R 53 (218)
T KOG1655|consen 2 NRIFGRGK-----PKEPPPSLQDAIDSVNK----RS-----------DSVEKKISKLDAELCKYKDQIKKTR 53 (218)
T ss_pred cccccCCC-----CCCCChhHHHHHHHHHH----hh-----------hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78999987 23555555566665522 22 3577888888888888888888774
No 29
>PRK00295 hypothetical protein; Provisional
Probab=32.69 E-value=1.5e+02 Score=22.01 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
-+|...+++|..++.+|..+..+|+...
T Consensus 26 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 26 DVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577788888999999999988888765
No 30
>PLN03138 Protein TOC75; Provisional
Probab=31.63 E-value=37 Score=36.21 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 036534 93 VTICYEA 99 (237)
Q Consensus 93 ~SLvYEA 99 (237)
...+||+
T Consensus 167 e~~l~~~ 173 (796)
T PLN03138 167 EDSFFEM 173 (796)
T ss_pred HHHHHHH
Confidence 3445554
No 31
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.00 E-value=67 Score=23.64 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
+|...+.+|..|+.+|..+..+|....
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777888888888888888888776
No 32
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.80 E-value=68 Score=29.14 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
..+..|++||.+++.|+..++.++...
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356788999999998888887766543
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.69 E-value=92 Score=22.10 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 114 IFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
|..|+.++..++.|...++.++..+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555544
No 34
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.63 E-value=53 Score=33.24 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 105 DPVYGCVAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 105 DPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
.|.....--|..+| ||++|+.||+.+|+++..+
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccc
Confidence 34444444455556 9999999999999887744
No 35
>PRK00736 hypothetical protein; Provisional
Probab=29.43 E-value=1.9e+02 Score=21.41 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
+|..-+.+|..++.+|..+..+|+...
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777888888888888888888765
No 36
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.98 E-value=45 Score=26.37 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcCCCCC
Q 036534 114 IFALQQQVVNLQAELSYLQAHLATLELPSPP 144 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~~~~~q~~ 144 (237)
+-.|+.+.++++.|.+.+++++..++..+..
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777888888888888888888776644
No 37
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.04 E-value=91 Score=25.72 Aligned_cols=31 Identities=42% Similarity=0.453 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 109 GCVAHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 109 GCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
..+.+|-.|+.+|.+++.|+..++.+|+.+.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888887654
No 38
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=27.48 E-value=46 Score=25.04 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=23.8
Q ss_pred chHHHHHhcC--CCcChHHHHHHHHHHHh
Q 036534 74 SNVSKLLLHI--PVHKRLDAVVTICYEAQ 100 (237)
Q Consensus 74 SNV~KmL~~l--p~~~R~dAv~SLvYEA~ 100 (237)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688899988 78999999999999995
No 39
>PLN02523 galacturonosyltransferase
Probab=27.33 E-value=1.4e+02 Score=30.96 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHhcCCC--cChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 036534 78 KLLLHIPV--HKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 134 (237)
Q Consensus 78 KmL~~lp~--~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~ 134 (237)
..|++||+ .+|..+|+.++++|.. +|-|..+|.+|+..|..++.++..++.+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q 198 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKN 198 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566764 5678899999999993 4446779999999999999988877654
No 40
>PF14282 FlxA: FlxA-like protein
Probab=27.05 E-value=96 Score=24.61 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
.+-.|+.||..|+++|+.++.+.+.-.
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666543
No 41
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.98 E-value=76 Score=25.29 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036534 114 IFALQQQVVNLQAELSYL 131 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~ 131 (237)
+..+++|+..++.|++.+
T Consensus 29 ~~~l~~q~~~~~~e~~~l 46 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKL 46 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 42
>PHA00370 III attachment protein
Probab=25.43 E-value=60 Score=30.84 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=5.3
Q ss_pred HHhhcccCCCCcc
Q 036534 98 EAQARLRDPVYGC 110 (237)
Q Consensus 98 EA~aR~rDPVyGC 110 (237)
++-.++-|-|.|-
T Consensus 178 ~~~~~~~dsi~~~ 190 (297)
T PHA00370 178 KASASVSDAISGF 190 (297)
T ss_pred HHHHHhHHhhhhh
Confidence 3334444444433
No 43
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.83 E-value=1.4e+02 Score=22.08 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036534 114 IFALQQQVVNLQAELSYLQAHL 135 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~L 135 (237)
|..|..+|.+|..++..++.++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555443
No 44
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=24.79 E-value=50 Score=25.74 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHhhhCCCCC
Q 036534 201 GGGDLQAMARELLHRQGSPPP 221 (237)
Q Consensus 201 ~~~~~q~~a~~~~~r~~~~~~ 221 (237)
...||.+|..||.+|||..|.
T Consensus 31 ~~~el~~l~~El~DRFG~~P~ 51 (101)
T PF03461_consen 31 SEEELEDLREELIDRFGPLPE 51 (101)
T ss_dssp SHHHHHHHHHHHHHHH-S--H
T ss_pred CHHHHHHHHHHHHHHcCCCcH
Confidence 356999999999999987764
No 45
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.43 E-value=1.1e+02 Score=23.87 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 114 IFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
|..|+.+..+|+.||..+.++|...
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888777776654
No 46
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.20 E-value=1.4e+02 Score=21.14 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
.+..++.++..++.+++.++.+...+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888877776655
No 47
>PRK10963 hypothetical protein; Provisional
Probab=23.00 E-value=1.7e+02 Score=25.78 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=38.1
Q ss_pred chHHHHHhcCCC--cChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 74 SNVSKLLLHIPV--HKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 74 SNV~KmL~~lp~--~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
..|...|++=|. .++.+.+.. .++-.|..| .|+-.++|+..++.++..++.+|..+
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~~------L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVEQ------MRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMTLL 63 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHHh------ccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777774 677777763 467777665 66667777777777777777666654
No 48
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=22.95 E-value=1.5e+02 Score=20.89 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
.+.+|..|+.+|++-|+.+.++|...
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~ 28 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMT 28 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36788889999999888888887754
No 49
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=22.76 E-value=30 Score=27.52 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.2
Q ss_pred HHHHhhcccCCCCccHHHHH
Q 036534 96 CYEAQARLRDPVYGCVAHIF 115 (237)
Q Consensus 96 vYEA~aR~rDPVyGCvG~I~ 115 (237)
-.|-..|.+|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56778999999999986544
No 50
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=22.32 E-value=65 Score=31.98 Aligned_cols=13 Identities=31% Similarity=0.688 Sum_probs=6.5
Q ss_pred CCccccccCCCCC
Q 036534 5 PSISGSVGGGGGG 17 (237)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (237)
|.+.+-||++|++
T Consensus 55 Pivgk~vgs~g~~ 67 (437)
T KOG4462|consen 55 PIVGKGVGSSGSS 67 (437)
T ss_pred ccccCcccccCcc
Confidence 4445555555444
No 51
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.03 E-value=1.5e+02 Score=31.03 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=49.3
Q ss_pred hccchHHHHHhc-------------CCCc--ChHHHHHHHHHHHhhcc------cCCCCccHHHHHHHHHHHHHHHHHHH
Q 036534 71 FGASNVSKLLLH-------------IPVH--KRLDAVVTICYEAQARL------RDPVYGCVAHIFALQQQVVNLQAELS 129 (237)
Q Consensus 71 FG~SNV~KmL~~-------------lp~~--~R~dAv~SLvYEA~aR~------rDPVyGCvG~I~~Lq~Qi~~lq~EL~ 129 (237)
|--|++++||+. +.|+ ..++..++|.|++.++- +++|-.-.-++..++.++..++.||.
T Consensus 283 YRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~ 362 (675)
T KOG0242|consen 283 YRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELE 362 (675)
T ss_pred ccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHH
Confidence 344556666665 4443 58999999999999874 68888888899999999999999887
Q ss_pred HHHHHH
Q 036534 130 YLQAHL 135 (237)
Q Consensus 130 ~~q~~L 135 (237)
.++..+
T Consensus 363 ~~~~~~ 368 (675)
T KOG0242|consen 363 RLKKKL 368 (675)
T ss_pred hhcccc
Confidence 754433
No 52
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=21.67 E-value=67 Score=32.99 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=9.7
Q ss_pred HHHhccchHHHHHhcCC
Q 036534 68 HKVFGASNVSKLLLHIP 84 (237)
Q Consensus 68 HKVFG~SNV~KmL~~lp 84 (237)
|.|=|.-.|-.-|+.|.
T Consensus 210 hlVGGLHTVYTKLKRLd 226 (641)
T KOG3915|consen 210 HLVGGLHTVYTKLKRLD 226 (641)
T ss_pred HHhchHHHHHHHhhccc
Confidence 55556666655555543
No 53
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=21.39 E-value=3.1e+02 Score=21.07 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHL 135 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~L 135 (237)
.....|+.+++.++.+++.++++|
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~~ 99 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQEL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567888888888888888877653
No 54
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=20.86 E-value=4.7e+02 Score=21.43 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhhCc
Q 036534 111 VAHIFALQQQVVNLQAELSYLQ--AHLATLE 139 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q--~~La~~~ 139 (237)
++-|-.||.|...++++++.++ ++|....
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~el~~~~ 34 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQNELEEAE 34 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678889999888887776654 5666544
No 55
>PRK04325 hypothetical protein; Provisional
Probab=20.86 E-value=2.9e+02 Score=20.78 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
.+|..-+.+|..++.+|..+..+|....
T Consensus 30 ~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 30 ATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778888888888888888887765
No 56
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=20.74 E-value=77 Score=32.60 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=2.9
Q ss_pred CCCCCcc
Q 036534 45 CVPGCIF 51 (237)
Q Consensus 45 C~~~Cif 51 (237)
|..+|-+
T Consensus 173 ~~necKm 179 (641)
T KOG3915|consen 173 QNNECKM 179 (641)
T ss_pred cccceee
Confidence 3344443
No 57
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.50 E-value=1.6e+02 Score=21.49 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
-+..++.++.+++.|-..++.++..+
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655544
No 58
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.33 E-value=1.5e+02 Score=27.39 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=31.4
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 104 RDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 104 rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
.-|+.|.-..|..|.++...+..+++.++++++..
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44999999999999999999999999999888865
Done!