Query 036534
Match_columns 237
No_of_seqs 148 out of 322
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 73.9 2.7 9.3E-05 26.7 2.8 27 112-138 2-28 (33)
2 2lqh_B Forkhead box O3, FOXO3A 57.0 3.1 0.00011 28.7 0.0 12 6-17 19-30 (52)
3 1zme_C Proline utilization tra 48.1 19 0.00066 24.2 3.7 27 111-137 43-69 (70)
4 3ra3_B P2F; coiled coil domain 41.6 22 0.00076 21.8 2.7 25 114-138 2-26 (28)
5 2xdj_A Uncharacterized protein 41.5 30 0.001 25.8 4.0 25 113-137 21-45 (83)
6 3nmd_A CGMP dependent protein 40.5 48 0.0017 24.5 5.0 29 112-140 40-68 (72)
7 1am9_A Srebp-1A, protein (ster 38.7 39 0.0013 24.5 4.2 28 111-138 49-76 (82)
8 3r4h_A Coiled coil helix CC-TE 38.3 29 0.001 22.1 3.0 28 112-139 2-29 (34)
9 2axc_A Colicin E7; translocati 38.3 7.4 0.00025 35.1 0.3 21 12-33 3-23 (264)
10 2yy0_A C-MYC-binding protein; 35.9 48 0.0016 22.7 4.1 25 114-138 28-52 (53)
11 1nkp_B MAX protein, MYC proto- 33.5 41 0.0014 24.1 3.6 28 111-138 46-73 (83)
12 1hlo_A Protein (transcription 31.4 43 0.0015 23.9 3.4 24 111-134 56-79 (80)
13 1uuj_A Platelet-activating fac 31.3 20 0.00068 27.3 1.6 24 114-137 60-83 (88)
14 4e61_A Protein BIM1; EB1-like 30.2 48 0.0016 26.1 3.7 30 109-138 1-30 (106)
15 1zxa_A CGMP-dependent protein 28.6 62 0.0021 23.5 3.8 31 113-143 26-56 (67)
16 1dh3_A Transcription factor CR 26.8 63 0.0021 22.0 3.4 28 112-139 22-49 (55)
17 3myf_A Sensor protein; HPT, hi 26.3 1.7E+02 0.0058 22.1 6.2 65 62-134 51-115 (119)
18 2zvf_A Alanyl-tRNA synthetase; 26.2 1.7E+02 0.0059 22.7 6.4 45 95-139 15-59 (171)
19 2qsr_A Transcription-repair co 25.4 34 0.0012 28.1 2.2 20 202-221 43-62 (173)
20 1rtm_1 Mannose-binding protein 24.5 48 0.0016 24.9 2.8 20 114-133 6-25 (149)
21 2y9y_A Imitation switch protei 24.3 4.3E+02 0.015 24.7 9.6 77 61-141 131-213 (374)
22 2dgc_A Protein (GCN4); basic d 23.9 80 0.0027 22.1 3.6 28 112-139 30-57 (63)
23 2pbi_A Regulator of G-protein 23.3 58 0.002 30.5 3.6 68 61-128 143-235 (424)
24 3bbp_D GRIP and coiled-coil do 21.8 1.5E+02 0.0052 21.8 4.8 56 66-132 7-63 (71)
25 1a93_B MAX protein, coiled coi 21.8 1.4E+02 0.0046 19.3 4.0 26 113-138 8-33 (34)
26 2pne_A 6.5 kDa glycine-rich an 20.6 1.1E+02 0.0037 22.6 3.8 14 4-17 40-53 (81)
27 3pbf_A Pulmonary surfactant-as 20.5 72 0.0025 23.6 3.0 25 113-137 3-27 (148)
28 4dpv_Z Protein (parvovirus coa 20.3 31 0.0011 34.1 1.1 6 31-36 43-48 (584)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.92 E-value=2.7 Score=26.70 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
|.|..|+++|..++.|++.++-+++.+
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999888754
No 2
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=57.05 E-value=3.1 Score=28.75 Aligned_cols=12 Identities=67% Similarity=1.068 Sum_probs=5.0
Q ss_pred CccccccCCCCC
Q 036534 6 SISGSVGGGGGG 17 (237)
Q Consensus 6 ~~~~~~~~~~~~ 17 (237)
++|-|-||++|+
T Consensus 19 slshsdgggsgg 30 (52)
T 2lqh_B 19 SLSHSDGGGSGG 30 (52)
Confidence 344444444433
No 3
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=48.12 E-value=19 Score=24.19 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 111 VAHIFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
-..|..|+.+|..|+.+|+.++..|+.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999887753
No 4
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=41.56 E-value=22 Score=21.78 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 114 IFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
|..|+++-..++.|++.+.-+++.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888899999999988888754
No 5
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.55 E-value=30 Score=25.83 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
.++.|+.||..++.|++.++.++..
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4677888888888888877766653
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.50 E-value=48 Score=24.45 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcC
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLEL 140 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~~ 140 (237)
..|..|+.+|.+...++..++.+|..|+.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999999999988864
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=38.67 E-value=39 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 111 VAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
+-.|..|+.++..|+.|+..++..+...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999887653
No 8
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=38.30 E-value=29 Score=22.06 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
|.+...++++..++.||+.++-+|+.+.
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889998888887664
No 9
>2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia coli str}
Probab=38.26 E-value=7.4 Score=35.11 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=1.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCCC
Q 036534 12 GGGGGGGGSSSGCGGGSGGSSG 33 (237)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~ 33 (237)
||++|+|-|||+ +++|+++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~ 23 (264)
T 2axc_A 3 GSRSGHGNGGGN-SNSGGGSNS 23 (264)
T ss_dssp -------------------CCC
T ss_pred CCcCCCCCCCCC-CCCCCCCch
Confidence 455555544333 444444443
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.86 E-value=48 Score=22.70 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 114 IFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
+..|+.++..|+.+++.++++|..+
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456666666666666777666643
No 11
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.53 E-value=41 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 111 VAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
+-.|..|+.++..++.|+..++.+...+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888877777777766666555443
No 12
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.43 E-value=43 Score=23.93 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036534 111 VAHIFALQQQVVNLQAELSYLQAH 134 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q~~ 134 (237)
+-.|..|+.++..++.|+..++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999998887754
No 13
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=31.28 E-value=20 Score=27.34 Aligned_cols=24 Identities=21% Similarity=0.474 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 114 IFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
|..||.+|.+|+.+++.++++|..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999988864
No 14
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.16 E-value=48 Score=26.09 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 109 GCVAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 109 GCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
|-.|.+..++.++.+.+.+++.+++++..+
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eL 30 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQY 30 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777776666554
No 15
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.61 E-value=62 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcCCCC
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATLELPSP 143 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~~~~q~ 143 (237)
.|..|+..++.-..|+..++.+|..|+..-+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788999999999999999999999986543
No 16
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.82 E-value=63 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
-.|..|+.++..|+.|...++.+|..++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888887653
No 17
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=26.26 E-value=1.7e+02 Score=22.06 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=42.5
Q ss_pred HHHHHHHHHhccchHHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 036534 62 AHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 134 (237)
Q Consensus 62 ~~F~~vHKVFG~SNV~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~ 134 (237)
.-+..+||+-|++..+.. . .-...+...|...|..+|+-..-..+..|..+|..+..++....++
T Consensus 51 ~l~~~aHkLkGaa~~~Ga------~--~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGV------P--TTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHTTTTC------H--HHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH------H--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888764332 1 1112233467777888887777778888888888887776655554
No 18
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.21 E-value=1.7e+02 Score=22.73 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 95 ICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 95 LvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
++.|......-+..--.-.|..|+.++..++.|++.++.+++...
T Consensus 15 ~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 15 LLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433345556666777777777777777777766653
No 19
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=25.36 E-value=34 Score=28.07 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCcHHHHHHHHHhhhCCCCC
Q 036534 202 GGDLQAMARELLHRQGSPPP 221 (237)
Q Consensus 202 ~~~~q~~a~~~~~r~~~~~~ 221 (237)
..||.+|..||.+|||..|.
T Consensus 43 ~eel~~l~~EL~DRFG~lP~ 62 (173)
T 2qsr_A 43 RVNYEELQEELIDRFGEYPD 62 (173)
T ss_dssp HHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHHHHCCCCcH
Confidence 67899999999999987764
No 20
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=24.54 E-value=48 Score=24.93 Aligned_cols=20 Identities=10% Similarity=0.311 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036534 114 IFALQQQVVNLQAELSYLQA 133 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~ 133 (237)
|..|+.++..|+.+|..++.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555544444
No 21
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=24.26 E-value=4.3e+02 Score=24.69 Aligned_cols=77 Identities=9% Similarity=0.171 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhccchHHHHHhcCC-CcChHHHH--HHHHHHHhhcccCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHH
Q 036534 61 AAHFAAVHKVFGASNVSKLLLHIP-VHKRLDAV--VTICYEAQARLRDPVYG---CVAHIFALQQQVVNLQAELSYLQAH 134 (237)
Q Consensus 61 ~~~F~~vHKVFG~SNV~KmL~~lp-~~~R~dAv--~SLvYEA~aR~rDPVyG---CvG~I~~Lq~Qi~~lq~EL~~~q~~ 134 (237)
-+.|..+...||+.++-++-.++. -...+++- ....|+=. +=|.| -++.|-..+.+|..++.+...++..
T Consensus 131 F~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry----~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~~K 206 (374)
T 2y9y_A 131 FRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI----ERIEDYEKYLKIIENEEEKIKRVKMQQEALRRK 206 (374)
T ss_dssp HHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC----SSCSCCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh----hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999996 22233322 23344422 22333 6899999999999999999999999
Q ss_pred HhhCcCC
Q 036534 135 LATLELP 141 (237)
Q Consensus 135 La~~~~~ 141 (237)
++.|..|
T Consensus 207 i~~y~~P 213 (374)
T 2y9y_A 207 LSEYKNP 213 (374)
T ss_dssp HTTCSSH
T ss_pred HHHccCC
Confidence 9999753
No 22
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.88 E-value=80 Score=22.08 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 112 AHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 112 G~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
..|..|+.++..|+.|...++.++..++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888777653
No 23
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=23.32 E-value=58 Score=30.54 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhccchHHHHHhc---CCCcChHHHHHHHHHHHh----hcccCCCCccHHH------------------HH
Q 036534 61 AAHFAAVHKVFGASNVSKLLLH---IPVHKRLDAVVTICYEAQ----ARLRDPVYGCVAH------------------IF 115 (237)
Q Consensus 61 ~~~F~~vHKVFG~SNV~KmL~~---lp~~~R~dAv~SLvYEA~----aR~rDPVyGCvG~------------------I~ 115 (237)
.+.+..+||.|...+-.=++++ +.++++.+-..-+|++.+ +|+.-|+.||+-+ +.
T Consensus 143 ~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~ 222 (424)
T 2pbi_A 143 KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVT 222 (424)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHH
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHH
Confidence 4678888999887776666665 455666667777777766 7889999998744 35
Q ss_pred HHHHHHHHHHHHH
Q 036534 116 ALQQQVVNLQAEL 128 (237)
Q Consensus 116 ~Lq~Qi~~lq~EL 128 (237)
.++.+|++|+.||
T Consensus 223 ~~r~~veqLk~~l 235 (424)
T 2pbi_A 223 AVRKEIMYYQQAL 235 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6777777777666
No 24
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=21.84 E-value=1.5e+02 Score=21.84 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHhccchHHHHHhcCC-CcChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 036534 66 AVHKVFGASNVSKLLLHIP-VHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQ 132 (237)
Q Consensus 66 ~vHKVFG~SNV~KmL~~lp-~~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q 132 (237)
++|.+|--.+.-.|.+.|. ..++.+-+.+|+.|+.+= ...|..|+..|+.||..+.
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777775 467889999999998763 3348889999988887653
No 25
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.83 E-value=1.4e+02 Score=19.25 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
.+...|+.|++++.+-+.+..++..+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 35678888999998888888877543
No 26
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C*
Probab=20.62 E-value=1.1e+02 Score=22.59 Aligned_cols=14 Identities=57% Similarity=1.180 Sum_probs=8.5
Q ss_pred CCCccccccCCCCC
Q 036534 4 NPSISGSVGGGGGG 17 (237)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (237)
||--.|.|||.+|.
T Consensus 40 npgcaggvggagga 53 (81)
T 2pne_A 40 NPGCAGGVGGAGGA 53 (81)
T ss_dssp CTTSCCCCCCCCCC
T ss_pred Cccccccccccccc
Confidence 66666666665543
No 27
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.51 E-value=72 Score=23.65 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 113 HIFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 113 ~I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
++-.|++++..|+.+|..++..|..
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~~ 27 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLSL 27 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999988843
No 28
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=20.29 E-value=31 Score=34.08 Aligned_cols=6 Identities=0% Similarity=-0.385 Sum_probs=2.5
Q ss_pred CCCCCh
Q 036534 31 SSGPCG 36 (237)
Q Consensus 31 ~~~~CA 36 (237)
+.-.|.
T Consensus 43 G~W~~g 48 (584)
T 4dpv_Z 43 GTFNNQ 48 (584)
T ss_dssp CCCCCC
T ss_pred ccccCC
Confidence 334443
Done!