Query 036534
Match_columns 237
No_of_seqs 148 out of 322
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 04:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036534.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036534hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 57.4 7.8 0.00056 25.1 4.6 29 111-139 32-60 (61)
2 d1hcia4 a.7.1.1 (A:633-746) al 54.2 5.8 0.00042 27.4 3.7 50 89-138 14-63 (114)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 29.8 38 0.0028 22.7 4.7 27 111-137 51-77 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 26.4 30 0.0022 23.0 3.6 29 110-138 48-76 (80)
5 d3alca_ g.38.1.1 (A:) Ethanol 24.3 24 0.0017 22.7 2.6 16 31-46 10-25 (65)
6 d1zmec1 g.38.1.1 (C:31-66) PUT 23.9 19 0.0014 21.2 1.9 15 33-47 2-16 (36)
7 d1pyia1 g.38.1.1 (A:30-71) PPR 23.8 21 0.0015 21.5 2.1 17 32-48 2-18 (42)
8 d3coqa1 g.38.1.1 (A:8-48) Gal4 23.2 19 0.0014 21.4 1.8 15 33-47 2-16 (41)
9 d2eyqa6 d.315.1.1 (A:990-1147) 21.1 22 0.0016 26.0 2.2 21 201-221 46-66 (158)
10 d1urfa_ a.2.6.1 (A:) Protein k 20.7 1.2E+02 0.0089 20.6 6.4 48 71-134 25-72 (81)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.39 E-value=7.8 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.067 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 036534 111 VAHIFALQQQVVNLQAELSYLQAHLATLE 139 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q~~La~~~ 139 (237)
+-.|..|+.|+..++.|+..++..+....
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 60 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQKNK 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 36899999999999999999998876543
No 2
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.21 E-value=5.8 Score=27.40 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 89 LDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 89 ~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
.+-+.+=+-|+..-+.+|+||-...|..+..+...++.||...+..+..+
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l 63 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKL 63 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888889999999999999999999999999888877665
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.82 E-value=38 Score=22.69 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036534 111 VAHIFALQQQVVNLQAELSYLQAHLAT 137 (237)
Q Consensus 111 vG~I~~Lq~Qi~~lq~EL~~~q~~La~ 137 (237)
+-.|..|+.++..+..++..++.+...
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888877777766665543
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.35 E-value=30 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.128 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036534 110 CVAHIFALQQQVVNLQAELSYLQAHLATL 138 (237)
Q Consensus 110 CvG~I~~Lq~Qi~~lq~EL~~~q~~La~~ 138 (237)
.+-.|..|+.++..+..|...++..+...
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35679999999999999999998877654
No 5
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=24.31 E-value=24 Score=22.70 Aligned_cols=16 Identities=25% Similarity=0.775 Sum_probs=14.1
Q ss_pred CCCCChhhHHhhhCCC
Q 036534 31 SSGPCGACKFLRRKCV 46 (237)
Q Consensus 31 ~~~~CAACK~lRRkC~ 46 (237)
...+|-.||..+.||.
T Consensus 10 ~~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 10 QNHSCDPCRKGKRRCD 25 (65)
T ss_dssp SCCSCHHHHHTTCCCS
T ss_pred cCHhHHHHHhccccCC
Confidence 4679999999999995
No 6
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.88 E-value=19 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.1
Q ss_pred CCChhhHHhhhCCCC
Q 036534 33 GPCGACKFLRRKCVP 47 (237)
Q Consensus 33 ~~CAACK~lRRkC~~ 47 (237)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467788888888854
No 7
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.79 E-value=21 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.667 Sum_probs=13.5
Q ss_pred CCCChhhHHhhhCCCCC
Q 036534 32 SGPCGACKFLRRKCVPG 48 (237)
Q Consensus 32 ~~~CAACK~lRRkC~~~ 48 (237)
..+|..||..+.||...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46789999999998753
No 8
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.24 E-value=19 Score=21.41 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=12.6
Q ss_pred CCChhhHHhhhCCCC
Q 036534 33 GPCGACKFLRRKCVP 47 (237)
Q Consensus 33 ~~CAACK~lRRkC~~ 47 (237)
.+|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 589999999999965
No 9
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.14 E-value=22 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.9
Q ss_pred CCCcHHHHHHHHHhhhCCCCC
Q 036534 201 GGGDLQAMARELLHRQGSPPP 221 (237)
Q Consensus 201 ~~~~~q~~a~~~~~r~~~~~~ 221 (237)
...||.++..|+.+|||..|.
T Consensus 46 ~~~el~~i~~El~DRFG~lP~ 66 (158)
T d2eyqa6 46 TENELEEIKVELIDRFGLLPD 66 (158)
T ss_dssp SHHHHHHHHHHHHHHHCSCCH
T ss_pred cHHHHHHHHHHHHHHcCCchH
Confidence 366999999999999987663
No 10
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.72 E-value=1.2e+02 Score=20.61 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=30.3
Q ss_pred hccchHHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 036534 71 FGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 134 (237)
Q Consensus 71 FG~SNV~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lq~EL~~~q~~ 134 (237)
=|+.||+++++.-...+|... -||+. ++..-.++|..|+.+|..+++.
T Consensus 25 eGaEnm~k~~~~~~~~DrK~l-----~eaq~-----------~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 25 QGAENMIQTYSNGSTKDRKLL-----LTAQQ-----------MLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 499999999998765565433 23332 3334456666777777666554
Done!