BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036538
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 94 LEANPAEIVTLFIEDYVTSPNGLTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQ 153
+ A AE VT + L +D + LR Y FP +P+ +S P +++I EN+
Sbjct: 1 MAATAAEAVTSGSGEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENE 59
Query: 154 RLVVFTSKSAKEASEGIAYQWRYVVENQYGDGGMKVGSC 192
VV T + + + Y+ EN G+G V S
Sbjct: 60 EPVVLTDTNL--VYPALKWDLEYLQEN-IGNGDFSVYSA 95
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 115 GLTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQW 174
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 8 ALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDL 64
Query: 175 RYVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 65 EYLQEN-IGNGDFSVYSA 81
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 116 LTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWR 175
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 23 LGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLE 79
Query: 176 YVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 80 YLQEN-IGNGDFSVYSA 95
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 116 LTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWR 175
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 23 LGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLE 79
Query: 176 YVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 80 YLQEN-IGNGDFSVYSA 95
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 116 LTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWR 175
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 26 LGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLE 82
Query: 176 YVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 83 YLQEN-IGNGDFSVYSA 98
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 116 LTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWR 175
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 23 LGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLE 79
Query: 176 YVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 80 YLQEN-IGNGDFSVYSA 95
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 116 LTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWR 175
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 23 LGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLE 79
Query: 176 YVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 80 YLQEN-IGNGDFSVYSA 95
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 116 LTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWR 175
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 25 LGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLE 81
Query: 176 YVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 82 YLQEN-IGNGDFSVYSA 97
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 127 KYWFPVSSM--PKNGESWPTVDDMIHENQRLVVFTSKSAK--EASEGIAYQWRYVVENQY 182
K P ++M PK SW D + EN R+ V S S + + A Q+R V +N
Sbjct: 117 KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSL 176
Query: 183 G 183
G
Sbjct: 177 G 177
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 247 PNFIAVDFYKSSNGRGAPEAVDEVNGRLVCGC 278
P F V+F + R A +AV E++GR +CGC
Sbjct: 110 PGFAFVEF---EDPRDAADAVRELDGRTLCGC 138
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 26 AFGHLALAPENQQDSITNQLHNGVRGLMLDMYDFQND-IWLCHSFD 70
GH+ P+N D I +L + V + ++FQ D +W SFD
Sbjct: 86 GIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD 131
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 26 AFGHLALAPENQQDSITNQLHNGVRGLMLDMYDFQND-IWLCHSFD 70
GH+ P+N D I +L + V + ++FQ D +W SFD
Sbjct: 85 GIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD 130
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 26 AFGHLALAPENQQDSITNQLHNGVRGLMLDMYDFQND-IWLCHSFD 70
GH+ P+N D I +L + V + ++FQ D +W SFD
Sbjct: 262 GIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD 307
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 247 PNFIAVDFYKSSNGRGAPEAVDEVNGRLVCGC 278
P F V+F + R A +AV +++GR +CGC
Sbjct: 110 PGFAFVEF---EDPRDAADAVRDLDGRTLCGC 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,395,752
Number of Sequences: 62578
Number of extensions: 385865
Number of successful extensions: 789
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 15
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)