BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036538
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis
thaliana GN=At5g67130 PE=1 SV=1
Length = 426
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/291 (59%), Positives = 216/291 (74%), Gaps = 1/291 (0%)
Query: 3 GLPFNRYSWLVTHNSFAKLGAKSAFGHLALAPENQQDSITNQLHNGVRGLMLDMYDFQND 62
GLPFN+Y+WL+THN+F+ A G + NQ+D+ITNQL NGVRGLMLDMYDF ND
Sbjct: 79 GLPFNKYTWLMTHNAFSNANAPLLPGVERITFYNQEDTITNQLQNGVRGLMLDMYDFNND 138
Query: 63 IWLCHSFDGRCYGSTTAFQPAKNVLEEVQAFLEANPAEIVTLFIEDYVTSPNGLTKVFDA 122
IWLCHS G+C+ + TAFQPA N+L EV+AFL NP EIVT+ IEDYV P GL+ +F
Sbjct: 139 IWLCHSLRGQCF-NFTAFQPAINILREVEAFLSQNPTEIVTIIIEDYVHRPKGLSTLFAN 197
Query: 123 ADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWRYVVENQY 182
A L KYWFPVS MP+ GE WPTV DM+ EN RL+VFTS +AKE EG+AYQWRY+VEN+
Sbjct: 198 AGLDKYWFPVSKMPRKGEDWPTVTDMVQENHRLLVFTSVAAKEDEEGVAYQWRYMVENES 257
Query: 183 GDGGMKVGSCPNRAESSPMNTRSKSLVLVNYFPDMPVLPLACKDNSAPLASMVSTCYEAA 242
GD G+K GSCPNR ES P+N++S SL L+NYFP PV ACK++SAPLA MV TC ++
Sbjct: 258 GDPGVKRGSCPNRKESQPLNSKSSSLFLMNYFPTYPVEKDACKEHSAPLAEMVGTCLKSG 317
Query: 243 GKRWPNFIAVDFYKSSNGRGAPEAVDEVNGRLVCGCGNIAYCKANMSYGVC 293
G R PNF+AV+FY S+G G E +D +NG ++CGC ++ C+ +YG C
Sbjct: 318 GNRMPNFLAVNFYMRSDGGGVFEILDRMNGPVLCGCETLSACQPGAAYGSC 368
>sp|Q10683|Y2075_MYCTU Uncharacterized protein Rv2075c/MT2135 OS=Mycobacterium
tuberculosis GN=Rv2075c PE=4 SV=1
Length = 487
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 4 LPFNRYSWLVTHNSFAKLGAKSAFGHLALAPENQQDSITNQLHNGVRGLMLDMYDFQN-- 61
+P WL THNSF L H A NQQ S+ QL VR L LD++
Sbjct: 112 VPLRETQWLGTHNSFNSLSDSFTVSH---ADSNQQLSLAQQLDIDVRALELDLHYLPRLE 168
Query: 62 -----DIWLCHSFDGRCYGSTTAFQP-AKNVLEEVQAFLEA--NPAEIVTLFIEDYVTSP 113
+ +CH + +P VL ++ +L A + E++ L++ED + +
Sbjct: 169 GHGAPGVTVCHGLGPKNANLGCTVEPLLATVLPQIANWLNAPGHTEEVILLYLEDQLKNA 228
Query: 114 NGLTKVFDAAD--LRK 127
+ V D LR+
Sbjct: 229 SAYESVVATLDQVLRR 244
>sp|A4WBF2|DADA_ENT38 D-amino acid dehydrogenase small subunit OS=Enterobacter sp.
(strain 638) GN=dadA PE=3 SV=1
Length = 432
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDGG----MKVGSCPNRAESSPMNTRSKSLVLV 211
+FT + AK + G+ +++ V+ +GG +K G +A+S M S S ++
Sbjct: 202 LFTQRLAKMCEQAGVTFRYNTPVDKLLSEGGKIYGVKCGDEVIKADSYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLAC--------KDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +DN AP+++++ Y+ A R+ N I V
Sbjct: 262 KGLLDIPVYPLKGYSLTIPVKEDNGAPVSTILDETYKIAITRFDNRIRV 310
>sp|A8AFS0|DADA_CITK8 D-amino acid dehydrogenase small subunit OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=dadA
PE=3 SV=1
Length = 432
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT + A+ A + G+ +++ VE +G G+K G +A++ M S S ++
Sbjct: 202 LFTQRLAQMAEQAGVTFRFNTPVEKLLYEGEQIYGVKCGDDIIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPL--------ACKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +D+ AP+++++ Y+ A R+ I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPVAQDDGAPVSTILDETYKIAITRFDKRIRV 310
>sp|Q7UCT6|DADA_SHIFL D-amino acid dehydrogenase small subunit OS=Shigella flexneri
GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKFGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|Q0T5L2|DADA_SHIF8 D-amino acid dehydrogenase small subunit OS=Shigella flexneri
serotype 5b (strain 8401) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKFGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|Q31ZN0|DADA_SHIBS D-amino acid dehydrogenase small subunit OS=Shigella boydii
serotype 4 (strain Sb227) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKFGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B7MTW7|DADA_ECO81 D-amino acid dehydrogenase small subunit OS=Escherichia coli O81
(strain ED1a) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B7MK86|DADA_ECO45 D-amino acid dehydrogenase small subunit OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|Q3Z2V9|DADA_SHISS D-amino acid dehydrogenase small subunit OS=Shigella sonnei (strain
Ss046) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B6I9Q0|DADA_ECOSE D-amino acid dehydrogenase small subunit OS=Escherichia coli
(strain SE11) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B7N3Z3|DADA_ECOLU D-amino acid dehydrogenase small subunit OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|P0A6J5|DADA_ECOLI D-amino acid dehydrogenase small subunit OS=Escherichia coli
(strain K12) GN=dadA PE=2 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B1IUA3|DADA_ECOLC D-amino acid dehydrogenase small subunit OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|P0A6J6|DADA_ECOL6 D-amino acid dehydrogenase small subunit OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=dadA PE=2 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|Q0TII6|DADA_ECOL5 D-amino acid dehydrogenase small subunit OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|A7ZZC3|DADA_ECOHS D-amino acid dehydrogenase small subunit OS=Escherichia coli O9:H4
(strain HS) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B1XA76|DADA_ECODH D-amino acid dehydrogenase small subunit OS=Escherichia coli
(strain K12 / DH10B) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|C4ZTN0|DADA_ECOBW D-amino acid dehydrogenase small subunit OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B7LXA3|DADA_ECO8A D-amino acid dehydrogenase small subunit OS=Escherichia coli O8
(strain IAI1) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B7NJF1|DADA_ECO7I D-amino acid dehydrogenase small subunit OS=Escherichia coli O7:K1
(strain IAI39 / ExPEC) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|P0A6J7|DADA_ECO57 D-amino acid dehydrogenase small subunit OS=Escherichia coli
O157:H7 GN=dadA PE=2 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B7LGU9|DADA_ECO55 D-amino acid dehydrogenase small subunit OS=Escherichia coli
(strain 55989 / EAEC) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|A7ZKW0|DADA_ECO24 D-amino acid dehydrogenase small subunit OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=dadA PE=3 SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B2TZB5|DADA_SHIB3 D-amino acid dehydrogenase small subunit OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=dadA PE=3
SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|B7UQ73|DADA_ECO27 D-amino acid dehydrogenase small subunit OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=dadA PE=3 SV=1
Length = 432
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ + + V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFHFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|Q32H27|DADA_SHIDS D-amino acid dehydrogenase small subunit OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=dadA PE=3 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT A+ A + G+ +++ V+ DG G+K G +A++ M S S ++
Sbjct: 202 LFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL +++ AP+++++ Y+ A R+ N + V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETYKIAITRFDNRMRV 310
>sp|B7LSJ5|DADA_ESCF3 D-amino acid dehydrogenase small subunit OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=dadA
PE=3 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEASE-GIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT + A+ A + G+ +++ V+ +G G+K G +A++ M S S ++
Sbjct: 202 LFTQRLAQMAEQAGVKFRFNTPVDKLLFEGEQIYGVKCGDEVIKADAYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPL--------ACKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL ++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPVANEDGAPVSTILDETYKIAITRFDNRIRV 310
>sp|A7MKD3|DADA_CROS8 D-amino acid dehydrogenase small subunit OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=dadA PE=3 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 157 VFTSKSAKEA-SEGIAYQWRYVVENQYGDG----GMKVGSCPNRAESSPMNTRSKSLVLV 211
+FT++ A+ A + G+ +++ V+ +G G+K G +A+ M S S ++
Sbjct: 202 LFTTRLAQMAEAAGVVFRYNTPVDRLLSEGQRIYGVKCGDEVIKADGYVMAFGSYSTAML 261
Query: 212 NYFPDMPVLPLA--------CKDNSAPLASMVSTCYEAAGKRWPNFIAV 252
D+PV PL ++ AP+++++ Y+ A R+ N I V
Sbjct: 262 KGIVDIPVYPLKGYSLTIPIADESGAPVSTVLDETYKIAITRFDNRIRV 310
>sp|Q2IMC7|AROE_ANADE Shikimate dehydrogenase OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=aroE PE=3 SV=1
Length = 278
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 17 SFAKLGAKSAFGHLALAPENQQDSITNQLHNGVRGLMLDMYDFQNDIWLCHSFD 70
+FAKLG +A+ L +APE +++ G +GL + + LCH+ D
Sbjct: 28 AFAKLGVDAAYVALPVAPERIDEALRGAHALGFQGLNVTVPHKPRAASLCHALD 81
>sp|Q9NWT6|HIF1N_HUMAN Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens
GN=HIF1AN PE=1 SV=2
Length = 349
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 116 LTKVFDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWR 175
L +D + LR Y FP +P+ +S P +++I EN+ VV T + + +
Sbjct: 23 LGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLE 79
Query: 176 YVVENQYGDGGMKVGSC 192
Y+ EN G+G V S
Sbjct: 80 YLQEN-IGNGDFSVYSA 95
>sp|Q8BLR9|HIF1N_MOUSE Hypoxia-inducible factor 1-alpha inhibitor OS=Mus musculus
GN=Hif1an PE=1 SV=2
Length = 349
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 120 FDAADLRKYWFPVSSMPKNGESWPTVDDMIHENQRLVVFTSKSAKEASEGIAYQWRYVVE 179
+D + LR Y FP +P+ +S P +++I EN+ VV T + + + Y+ E
Sbjct: 27 WDESQLRSYSFPTRPIPRLSQSDPRAEELI-ENEEPVVLTDTNL--VYPALKWDLEYLQE 83
Query: 180 NQYGDGGMKVGSC 192
N G+G V S
Sbjct: 84 N-IGNGDFSVYSA 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,740,220
Number of Sequences: 539616
Number of extensions: 4710443
Number of successful extensions: 9468
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 9462
Number of HSP's gapped (non-prelim): 33
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)