BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036539
(749 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/735 (59%), Positives = 560/735 (76%), Gaps = 6/735 (0%)
Query: 17 EDVRTQVLEGLLGYILCSTQEAVVMPPHVAFAIRPNPGFWEFVKVNSDDLSVEAITVTDF 76
E R ++ G +L STQEA+V+PP VA A+RP PG WE+++VN L VE + +F
Sbjct: 58 EQTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEF 117
Query: 77 LKFKELVFDEDWAKDEN-ALEVDFGAYEFSLPQLTLSSSIGNGISFVSKFVTAKLSGRQD 135
L FKE + D K+ N LE+DF + S+P+ TL IGNG+ F+++ ++AKL ++
Sbjct: 118 LHFKEELVD--GVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKE 175
Query: 136 CAQPLVDYLLSLDHQGEKLMINDNLNTAEKLQMALIVAEVSLSTLPKDTPYQKFELRFKE 195
PL+ +L HQG+ LM+++ + LQ L AE L+ L +T Y++FE +F+E
Sbjct: 176 SLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEE 235
Query: 196 WGFEKGWGHTAERVRETMRSLSEVLQAPDPLHMEKFLSSLPILFNVVIFSPHGYFGQADV 255
G E+GWG AERV + +R L ++L+APDP +E FL +P++FNVVI SPHGYF Q +V
Sbjct: 236 IGLERGWGDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNV 295
Query: 256 LGLPDTGGQVVYILDQVKALEEELLLRIKQQGLYIKPQIVVVTRLIPDARGTKCNQELEP 315
LG PDTGGQVVYILDQV+ALE E+L RIKQQGL IKP+I+++TRL+PDA GT C + LE
Sbjct: 296 LGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLER 355
Query: 316 IEGTKHSNILRVPFKTDKGILHRWVSRFDVYPYLEGFAQDATTMILEFLGGKPDLIIGNY 375
+ +++ +ILRVPF+T+KGI+ +W+SRF+V+PYLE + +DA + + L GKPDLIIGNY
Sbjct: 356 VYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNY 415
Query: 376 SDGNLVASVMASKLGITQATIAHALEKTKYEDSDVKWKELDPKYHFSCQFIADTIAMNAT 435
SDGNLVAS++A KLG+TQ TIAHALEKTKY DSD+ WK+LD KYHFSCQF AD AMN T
Sbjct: 416 SDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHT 475
Query: 436 DFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFP 495
DFII STFQEIAGSK+ GQYESHTAFTLPGL RVV GIDV DPKFNI +PGAD S+YFP
Sbjct: 476 DFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFP 535
Query: 496 YTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTEWYG 555
YTE++RRLTKFH EIEELLY+ +N EH+ L D+KKPI+F+MARLD VKNL+GL EWYG
Sbjct: 536 YTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYG 595
Query: 556 KNKRLRNLVNLVIVGAFFDPSK-SKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLR 614
KN RLR L NLV+VG D K SKD EE AE+KKM+ L+E+Y+L GQ RWI++Q DR+R
Sbjct: 596 KNTRLRELANLVVVGG--DRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVR 653
Query: 615 NGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHID 674
NGELYR I DTKGAFVQPALYEAFGLTV+EAM CGLPTFAT +GGPAEIIV G SGFHID
Sbjct: 654 NGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHID 713
Query: 675 PYNGDESSDKIADFFEACKVDPTYWNKFSTEGLKRINECYTWKIYANKMLNMGCMYSFWK 734
PY+GD+++D +ADFF CK DP++W++ S GL+RI E YTW+IY+ ++L + +Y FWK
Sbjct: 714 PYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWK 773
Query: 735 QLNKGQKLAKQRYIE 749
++ +L +RY+E
Sbjct: 774 HVSNLDRLEARRYLE 788
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/735 (58%), Positives = 552/735 (75%), Gaps = 6/735 (0%)
Query: 17 EDVRTQVLEGLLGYILCSTQEAVVMPPHVAFAIRPNPGFWEFVKVNSDDLSVEAITVTDF 76
E R ++ G +L STQEA+V+PP VA A+RP PG WE+++VN L VE + +F
Sbjct: 58 EQTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEF 117
Query: 77 LKFKELVFDEDWAKDEN-ALEVDFGAYEFSLPQLTLSSSIGNGISFVSKFVTAKLSGRQD 135
L FKE + D K+ N LE+DF + S+P+ TL IGNG+ F+++ ++AKL ++
Sbjct: 118 LHFKEELVD--GVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKE 175
Query: 136 CAQPLVDYLLSLDHQGEKLMINDNLNTAEKLQMALIVAEVSLSTLPKDTPYQKFELRFKE 195
PL+ +L HQG+ L +++ + LQ L AE L+ L +T Y++FE +F+E
Sbjct: 176 SLLPLLKFLRLHSHQGKNLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEE 235
Query: 196 WGFEKGWGHTAERVRETMRSLSEVLQAPDPLHMEKFLSSLPILFNVVIFSPHGYFGQADV 255
G E+GWG AERV + +R L ++L+APDP +E FL +P +FNVVI SPHGYF Q +V
Sbjct: 236 IGLERGWGDNAERVLDXIRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNV 295
Query: 256 LGLPDTGGQVVYILDQVKALEEELLLRIKQQGLYIKPQIVVVTRLIPDARGTKCNQELEP 315
LG PDTGGQVVYILDQV+ALE E L RIKQQGL IKP+I+++TRL+PDA GT C + LE
Sbjct: 296 LGYPDTGGQVVYILDQVRALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLER 355
Query: 316 IEGTKHSNILRVPFKTDKGILHRWVSRFDVYPYLEGFAQDATTMILEFLGGKPDLIIGNY 375
+ +++ +ILRVPF+T+KGI+ +W+SRF+V+PYLE + +DA + + L GKPDLIIGNY
Sbjct: 356 VYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNY 415
Query: 376 SDGNLVASVMASKLGITQATIAHALEKTKYEDSDVKWKELDPKYHFSCQFIADTIAMNAT 435
SDGNLVAS++A KLG+TQ TIAHALEKTKY DSD+ WK+LD KYHFSCQF AD A N T
Sbjct: 416 SDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHT 475
Query: 436 DFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGIDVLDPKFNIAAPGADQSVYFP 495
DFII STFQEIAGSK+ GQYESHTAFTLPGL RVV GIDV DPKFNI +PGAD S+YFP
Sbjct: 476 DFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFP 535
Query: 496 YTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTEWYG 555
YTE++RRLTKFH EIEELLY+ +N EH+ L D+KKPI+F+ ARLD VKNL+GL EWYG
Sbjct: 536 YTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYG 595
Query: 556 KNKRLRNLVNLVIVGAFFDPSK-SKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLR 614
KN RLR L NLV+VG D K SKD EE AE KK + L+E+Y+L GQ RWI++Q DR+R
Sbjct: 596 KNTRLRELANLVVVGG--DRRKESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVR 653
Query: 615 NGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHID 674
NGELYR I DTKGAFVQPALYEAFGLTV+EA CGLPTFAT +GGPAEIIV G SGFHID
Sbjct: 654 NGELYRYICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHID 713
Query: 675 PYNGDESSDKIADFFEACKVDPTYWNKFSTEGLKRINECYTWKIYANKMLNMGCMYSFWK 734
PY+GD+++D +ADFF CK DP++W++ S GL+RI E YTW+IY+ ++L + +Y FWK
Sbjct: 714 PYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWK 773
Query: 735 QLNKGQKLAKQRYIE 749
++ +L +RY+E
Sbjct: 774 HVSNLDRLEARRYLE 788
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 142/499 (28%), Positives = 235/499 (47%), Gaps = 64/499 (12%)
Query: 240 NVVIFSPHGYFGQADVLGL--PDTGGQVVYILDQVKALEEELLLRIKQQGLYIKPQIVVV 297
+V +P G F AD PD GGQ+VY+ +E+ L + + G+ Q+ ++
Sbjct: 9 HVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGV----QVDII 56
Query: 298 TRLIPDARGTKCNQELEPIEGTKHSNILRVPFKTDKGILHRWVSRFDVYPYLEGFAQDAT 357
TR I D + + E++ + T I+R+PF DK ++ + +++PYL +
Sbjct: 57 TRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKII 111
Query: 358 TMILEFLGGKPDLIIGNYSDGNLVASVMASKLGITQATIAHALEKTKYEDSDVK---WKE 414
E G P ++ +Y DG L ++ + G+ H+L K E +V +KE
Sbjct: 112 NFYRE-EGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKE 170
Query: 415 LDPKYHFSCQFIADTIAMNATDFIIASTFQEIAGSKDRPGQYESHTAFTLPGLCRVVKGI 474
+D ++ F + IA+ + M+ D II ST QE R GQY SH + G V
Sbjct: 171 MDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHDLYR--GAVNVED-- 219
Query: 475 DVLDPKFNIAAPGADQSVY-FPYTEK-QRRLTKFHPEIEELLYNKEDNNEHIGYLADRKK 532
D KF++ PG + V+ Y +K + ++TK+ ++ +E + +
Sbjct: 220 ---DDKFSVIPPGVNTRVFDGEYGDKIKAKITKY--------LERDLGSERM------EL 262
Query: 533 PIIFSMARLDVVKNLTGLTEWYGKNKRLRNLVNLV-----IVGAFFDPSKSKDREETAEI 587
P I + +RLD KN GL E Y +NK L++ NLV I F D S++ +EE +
Sbjct: 263 PAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRA-GQEEKEIL 321
Query: 588 KKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMN 647
K+ L++ +G++ S + G Y +A F + YE FGL +EAM
Sbjct: 322 GKIIELIDNNDCRGKVSMFPLNSQQELAG-CYAYLASKGSVFALTSFYEPFGLAPVEAMA 380
Query: 648 CGLPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFFEACKVDPTYWNKFSTEGL 707
GLP T GGPAEI+ G G +DP + ++ + + FE+ + W+ + +G
Sbjct: 381 SGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEET----WSAYQEKGK 436
Query: 708 KRINECYTWKIYANKMLNM 726
+R+ E YTW+ A L +
Sbjct: 437 QRVEERYTWQETARGYLEV 455
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 528 ADRKKPIIFSMARLDVVKNLTGLTEWYGKNKRLRNLVNLVIVG--AFFDPSKSKDREETA 585
D +KPII ++R D K + + E Y K K V L++VG A DP E+T
Sbjct: 227 VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKT- 285
Query: 586 EIKKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVIEA 645
+ + E Y +K I + R ++ +D +Q ++ E FGLTV EA
Sbjct: 286 ----LRKIGEDYDVKVLTNLIGVHA---REVNAFQRASDV---ILQMSIREGFGLTVTEA 335
Query: 646 MNCGLPTFATNQGGPAEIIVDGVSGFHIDPYN 677
M G P GG IVDG +GF + N
Sbjct: 336 MWKGKPVIGRAVGGIKFQIVDGETGFLVRDAN 367
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 528 ADRKKPIIFSMARLDVVKNLTGLTEWYGKNKRLRNLVNLVIVG--AFFDPSKSKDREETA 585
D +KPII ++R D K + + E Y K K V L++VG A DP E+T
Sbjct: 227 VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVXAHDDPEGWIYFEKT- 285
Query: 586 EIKKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVIEA 645
+ + E Y +K I + R ++ +D +Q ++ E FGLTV EA
Sbjct: 286 ----LRKIGEDYDVKVLTNLIGVHA---REVNAFQRASDV---ILQXSIREGFGLTVTEA 335
Query: 646 MNCGLPTFATNQGGPAEIIVDGVSGFHIDPYN 677
G P GG IVDG +GF + N
Sbjct: 336 XWKGKPVIGRAVGGIKFQIVDGETGFLVRDAN 367
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 528 ADRKKPIIFSMARLDVVKNLTGLTEWYGKNKRLRNLVNLVIVG--AFFDPSKSKDREETA 585
D +KPII ++R D K + + E Y K K V L++VG A DP E+T
Sbjct: 227 VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKT- 285
Query: 586 EIKKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVIEA 645
+ + E Y +K I + R ++ +D +Q ++ FGLTV EA
Sbjct: 286 ----LRKIGEDYDVKVLTNLIGVHA---REVNAFQRASDV---ILQMSIRAGFGLTVTEA 335
Query: 646 MNCGLPTFATNQGGPAEIIVDGVSGFHIDPYN 677
M G P GG IVDG +GF + N
Sbjct: 336 MWKGKPVIGRAVGGIKFQIVDGETGFLVRDAN 367
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 32/210 (15%)
Query: 464 LPGLCRVVKGIDVLDPKFNIAAPGADQSVYFPYTEKQRRLTKFHPEIEELLYNKEDNNEH 523
L G+ +V G+DV + P D+ + Y IE NKE
Sbjct: 272 LTGITGIVNGMDVSE-----WDPSKDKYITAKYDATT--------AIEAKALNKEALQAE 318
Query: 524 IGYLADRKKPIIFSMARLDVVKNLTGLTEWYGKNKRLRNLVNLVIVGAFFDPSKSKDREE 583
G DRK P+I + RL+ K + + ++ V +V++G K + E
Sbjct: 319 AGLPVDRKIPLIAFIGRLEEQKGPDVMAA--AIPELMQEDVQIVLLGT------GKKKFE 370
Query: 584 TAEIKKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVI 643
K + ++ EKY G++R + N L I P+ +E GL +
Sbjct: 371 ----KLLKSMEEKYP--GKVRAVVK-----FNAPLAHLIMAGADVLAVPSRFEPCGLIQL 419
Query: 644 EAMNCGLPTFATNQGGPAEIIVDGVSGFHI 673
+ M G P + GG + +++G +GFH+
Sbjct: 420 QGMRYGTPCACASTGGLVDTVIEGKTGFHM 449
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 636 EAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGF 671
E+FGL ++EAM CG+P T GG E+I G +G+
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 330
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 636 EAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGF 671
E+FGL ++EAM CG+P T GG E+I G +G+
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 350
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 129/342 (37%), Gaps = 49/342 (14%)
Query: 395 TIAHALEKTKYEDSDVKWKELDPKYHFSCQ---FIADTIAMNATDFIIASTFQEIAGSKD 451
T AHA+ + ++ +E+D + + +A T +IAST G
Sbjct: 73 TTAHAMAEI------IREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSM 126
Query: 452 RPGQYESHTAFTLPGLCRVVKGIDVLD-------PKFNIAAPGADQSVYFPYTEKQRRLT 504
PG +S L ++ +DVL +F A + P +R T
Sbjct: 127 LPGSRQS--------LRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFT 178
Query: 505 KFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTEWYGKNKRLRNLV 564
PE +K + +G+ P+I +RL K L + + R
Sbjct: 179 PATPE------DKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 565 NLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIAD 624
L+IVG+ +S R ++ + + + + + + +AA +++ A
Sbjct: 231 QLLIVGS--GRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAA-------ADIFAMPAR 281
Query: 625 TKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDK 684
T+G + E G+ +EA CG+P A GG E + +G ++ + D+ S+
Sbjct: 282 TRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSEL 337
Query: 685 IADFFEACKVDPTYWNKFSTEGLKRINECYTWKIYANKMLNM 726
+ + + DP G + ++W+I ++ N+
Sbjct: 338 LIELLD----DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 129/342 (37%), Gaps = 49/342 (14%)
Query: 395 TIAHALEKTKYEDSDVKWKELDPKYHFSCQ---FIADTIAMNATDFIIASTFQEIAGSKD 451
T AHA+ + ++ +E+D + + +A T +IAST G
Sbjct: 73 TTAHAMAEI------IREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSM 126
Query: 452 RPGQYESHTAFTLPGLCRVVKGIDVLD-------PKFNIAAPGADQSVYFPYTEKQRRLT 504
PG +S L ++ +DVL +F A + P +R T
Sbjct: 127 LPGSRQS--------LRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFT 178
Query: 505 KFHPEIEELLYNKEDNNEHIGYLADRKKPIIFSMARLDVVKNLTGLTEWYGKNKRLRNLV 564
PE +K + +G+ P+I +RL K L + + R
Sbjct: 179 PATPE------DKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 565 NLVIVGAFFDPSKSKDREETAEIKKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIAD 624
L+IVG+ +S R ++ + + + + + + +AA +++ A
Sbjct: 231 QLLIVGS--GRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAA-------ADIFAMPAR 281
Query: 625 TKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDK 684
T+G + E G+ +EA CG+P A GG E + +G ++ + D+ S+
Sbjct: 282 TRGGGLD---VEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSEL 337
Query: 685 IADFFEACKVDPTYWNKFSTEGLKRINECYTWKIYANKMLNM 726
+ + + DP G + ++W+I ++ N+
Sbjct: 338 LIELLD----DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNI 375
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 44/221 (19%)
Query: 478 DP-KFNIAAPGADQSVYFP----YTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKK 532
DP + ++ +PGAD +Y P TE+ RR E+ L+ K +G L K
Sbjct: 186 DPDRISVVSPGADVELYSPGNDRATERSRR------ELGIPLHTKV--VAFVGRLQPFKG 237
Query: 533 PIIFSMARLDVVKNLTGLTEWYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHA 592
P + +K + L + ++ LR ++I G P+ + D
Sbjct: 238 PQVL-------IKAVAALFD-RDPDRNLR----VIICGGPSGPNATPD--------TYRH 277
Query: 593 LMEKYQLKGQMRWIAAQSDRLRNGEL---YRCIADTKGAFVQPALYEAFGLTVIEAMNCG 649
+ E+ ++ ++R++ D EL YR AD P+ E+FGL +EA G
Sbjct: 278 MAEELGVEKRIRFL----DPRPPSELVAVYRA-ADI---VAVPSFNESFGLVAMEAQASG 329
Query: 650 LPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFFE 690
P A GG + +G +G +D ++ +D +A +
Sbjct: 330 TPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 370
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 44/221 (19%)
Query: 478 DP-KFNIAAPGADQSVYFP----YTEKQRRLTKFHPEIEELLYNKEDNNEHIGYLADRKK 532
DP + ++ +PGAD +Y P TE+ RR E+ L+ K +G L K
Sbjct: 206 DPDRISVVSPGADVELYSPGNDRATERSRR------ELGIPLHTKV--VAFVGRLQPFKG 257
Query: 533 PIIFSMARLDVVKNLTGLTEWYGKNKRLRNLVNLVIVGAFFDPSKSKDREETAEIKKMHA 592
P + +K + L + ++ LR ++I G P+ + D
Sbjct: 258 PQVL-------IKAVAALFD-RDPDRNLR----VIICGGPSGPNATPD--------TYRH 297
Query: 593 LMEKYQLKGQMRWIAAQSDRLRNGEL---YRCIADTKGAFVQPALYEAFGLTVIEAMNCG 649
+ E+ ++ ++R++ D EL YR AD P+ E+FGL +EA G
Sbjct: 298 MAEELGVEKRIRFL----DPRPPSELVAVYRA-ADI---VAVPSFNESFGLVAMEAQASG 349
Query: 650 LPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFFE 690
P A GG + +G +G +D ++ +D +A +
Sbjct: 350 TPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 636 EAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFFEACKVD 695
E FGLT IEA G P A N+GG E +++ +G+ + N D ++I D + +
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLV---NAD--VNEIIDAXKKVSKN 162
Query: 696 PTYWNKFSTEGLKRINE 712
P +KF + +R E
Sbjct: 163 P---DKFKKDCFRRAKE 176
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 588 KKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMN 647
+K AL EK ++ + + + ++D EL AD + PA EA G+ ++EA+
Sbjct: 240 RKFEALAEKLGVRSNVHFFSGRND---VSELM-AAADL---LLHPAYQEAAGIVLLEAIT 292
Query: 648 CGLPTFATNQGGPAEIIVDGVSGFHI-DPYNGDE 680
GLP T G A I D G I +P++ ++
Sbjct: 293 AGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQ 326
>pdb|2BEN|A Chain A, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21 Y54a Mutant.
pdb|2BEN|B Chain B, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21 Y54a Mutant
Length = 170
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 665 VDGVSGF-HIDPYNGDESSDKIADFFEACKVDPTYWNKFSTEGLKRINECYTWKIYA 720
V+G+ GF P +G +S + FFE + PT WNK + LK +TWK+ A
Sbjct: 32 VEGLKGFPQAGPADGHIASADKSTFFELDQQTPTRWNKLN---LKTGPNSFTWKLTA 85
>pdb|2BEM|A Chain A, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21
pdb|2BEM|B Chain B, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21
pdb|2BEM|C Chain C, Crystal Structure Of The Serratia Marcescens
Chitin-Binding Protein Cbp21
pdb|2LHS|A Chain A, Structure Of The Chitin Binding Protein 21 (Cbp21)
Length = 170
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 665 VDGVSGF-HIDPYNGDESSDKIADFFEACKVDPTYWNKFSTEGLKRINECYTWKIYA 720
V+G+ GF P +G +S + FFE + PT WNK + LK +TWK+ A
Sbjct: 32 VEGLKGFPQAGPADGHIASADKSTFFELDQQTPTRWNKLN---LKTGPNSFTWKLTA 85
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 588 KKMHALMEKYQLKGQMRWIAAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMN 647
+K AL EK ++ + + + ++D + PA EA G+ ++EA+
Sbjct: 240 RKFEALAEKLGVRSNVHFFSGRNDVSEL-------XAAADLLLHPAYQEAAGIVLLEAIT 292
Query: 648 CGLPTFATNQGGPAEIIVDGVSGFHI-DPYNGDE 680
GLP T G A I D G I +P++ ++
Sbjct: 293 AGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQ 326
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 599 LKGQMRWI-----AAQSDRLRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTF 653
L G +R++ A ++ +R+ ++Y C G E+FG+ ++EAM G
Sbjct: 261 LAGHLRFLGQVDDATKASAMRSADVY-CAPHLGG--------ESFGIVLVEAMAAGTAVV 311
Query: 654 ATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFFEACKVDPTYWNKFSTEGLKRINEC 713
A++ ++ DG +G + + D + + E ++ Y + S +R++
Sbjct: 312 ASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARAS----ERVHR- 366
Query: 714 YTWKIYANKMLNM 726
Y W + + +++ +
Sbjct: 367 YDWSVVSAQIMRV 379
>pdb|2IGS|A Chain A, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|B Chain B, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|C Chain C, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|D Chain D, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|E Chain E, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|F Chain F, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|G Chain G, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
pdb|2IGS|H Chain H, Crystal Structure Of The Protein Of Unknown Function From
Pseudomonas Aeruginosa
Length = 219
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 309 CNQELEPIEGTKHSNILRVPFKTDKGILHRWVSRFDVYPYLEGFAQDATTMI 360
CN E+ P+ + N+ R+ + G L R+ +VYP GF+ DA+ I
Sbjct: 91 CNVEILPLLTSXAQNLDRIKARFGSGYLDRFKGSPNVYPTDVGFSTDASGGI 142
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 630 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFF 689
+ P+ +E FGL +EAM G A+ GG +II + +G + + E ++ I
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 393
Query: 690 EACKVDPTYWNKFSTEGLKRINECYTWKIYANKMLN 725
E + D +KF E K+ ++W+ A + +
Sbjct: 394 ELSRSD---LSKFR-ENCKKRAMSFSWEKSAERYVK 425
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 630 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFF 689
+ P+ +E FGL +EAM G A+ GG +II + +G + + E ++ I
Sbjct: 335 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 393
Query: 690 EACKVDPTYWNKFSTEGLKRINECYTWKIYANKMLN 725
E + D +KF E K+ ++W+ A + +
Sbjct: 394 ELSRSD---LSKFR-ENCKKRAMSFSWEKSAERYVK 425
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 630 VQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPYNGDESSDKIADFF 689
+ P+ +E FGL +EAM G A+ GG +II + +G + + E ++ I
Sbjct: 336 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKAL 394
Query: 690 EACKVDPTYWNKFSTEGLKRINECYTWKIYANKMLN 725
E + D +KF E K+ ++W+ A + +
Sbjct: 395 ELSRSD---LSKFR-ENCKKRAMSFSWEKSAERYVK 426
>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
Length = 189
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 617 ELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEII-------VDGVS 669
ELYR A G +V YE FG I+ +P + P ++ V G+
Sbjct: 108 ELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDLWQYDEYGQVPGIG 167
Query: 670 GFHIDPYNGDESSD 683
++ NGD+S D
Sbjct: 168 KCDLNRLNGDKSLD 181
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 82 LVFDEDWAKDENALEVDFGAYEFSLPQLTLSSSIGNGISFVSKFVTAKLSGRQDCAQPLV 141
L + D +D+ L D G F + L L G+G+ V G D Q ++
Sbjct: 151 LAYGLDKEEDQTILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVII 206
Query: 142 DYLLS-------LDHQGEKLMINDNLNTAEKLQMALIVAEVSLSTLP-----KDTPYQKF 189
DYL++ +D +K+ + + AEK + L + +LP ++ P
Sbjct: 207 DYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLH-L 265
Query: 190 ELRFKEWGFEKGWGHTAERVRETMRSLSEVLQ 221
E+ FE+ H ER TM + + LQ
Sbjct: 266 EMTLTRAKFEELSAHLVER---TMGPVRQALQ 294
>pdb|2Q08|A Chain A, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|B Chain B, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|C Chain C, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|D Chain D, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|E Chain E, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|F Chain F, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|G Chain G, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|H Chain H, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|I Chain I, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|J Chain J, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|K Chain K, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|L Chain L, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q6E|A Chain A, Crystal Structure Of Glucuronate Isomerase From Bacillus
Halodurans Complexed With Zn
pdb|2Q6E|B Chain B, Crystal Structure Of Glucuronate Isomerase From Bacillus
Halodurans Complexed With Zn
pdb|2Q6E|C Chain C, Crystal Structure Of Glucuronate Isomerase From Bacillus
Halodurans Complexed With Zn
pdb|3HK5|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate
pdb|3HK5|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate
pdb|3HK7|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|C Chain C, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|D Chain D, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|E Chain E, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|F Chain F, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|G Chain G, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|H Chain H, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|I Chain I, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|J Chain J, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|K Chain K, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|L Chain L, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK8|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinohydroxamate
pdb|3HK8|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinohydroxamate
pdb|3HK9|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|C Chain C, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|D Chain D, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|E Chain E, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|F Chain F, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|G Chain G, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|H Chain H, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|I Chain I, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|J Chain J, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|K Chain K, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|L Chain L, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HKA|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Fructuronate
pdb|3HKA|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Fructuronate
pdb|3HKA|C Chain C, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Fructuronate
Length = 427
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 141 VDYLLSLDHQGEKLMINDNLNTAEKLQM-------ALIVAEVSLSTLPKDTPYQKFELRF 193
VD +L L + + +M ND + E++ + A + L L + Y++ + R
Sbjct: 128 VDTVLQLANVSDVVMTNDPFDDNERISWLEGKQPDSRFHAALRLDPLLNE--YEQTKHRL 185
Query: 194 KEWGFEKGWGHTAERVRETMRSLSEVLQAPDPLHMEKFLSSLPILFN 240
++WG++ ++E R L++ ++ DP++M SLP F+
Sbjct: 186 RDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMA---VSLPPTFS 229
>pdb|2QEE|A Chain A, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|B Chain B, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|C Chain C, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|D Chain D, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|E Chain E, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|F Chain F, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|G Chain G, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|H Chain H, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|I Chain I, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|J Chain J, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|K Chain K, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|L Chain L, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
Length = 437
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 141 VDYLLSLDHQGEKLMINDNLNTAEKLQM-------ALIVAEVSLSTLPKDTPYQKFELRF 193
VD +L L + + +M ND + E++ + A + L L + Y++ + R
Sbjct: 130 VDTVLQLANVSDVVMTNDPFDDNERISWLEGKQPDSRFHAALRLDPLLNE--YEQTKHRL 187
Query: 194 KEWGFEKGWGHTAERVRETMRSLSEVLQAPDPLHMEKFLSSLPILFN 240
++WG++ ++E R L++ ++ DP++M SLP F+
Sbjct: 188 RDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMA---VSLPPTFS 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,181,344
Number of Sequences: 62578
Number of extensions: 1012441
Number of successful extensions: 2204
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 42
length of query: 749
length of database: 14,973,337
effective HSP length: 106
effective length of query: 643
effective length of database: 8,340,069
effective search space: 5362664367
effective search space used: 5362664367
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)