BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036540
(562 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 280/564 (49%), Gaps = 65/564 (11%)
Query: 28 AAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-MSIH 86
+ ++ Y+++V+ + CN ++ +NG FPGPTI GD V++ +TN + IH
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 87 WHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAI 145
WHG+ Q WADG A I+QC I G ++ Y+F V GT ++H H+ R A +YG++
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTVD-NPGTFFYHGHLGMQRSAGLYGSL 119
Query: 146 VIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGL---------PPQTS--- 193
++ P + PF E N++L +WW+ + ++GL PQT
Sbjct: 120 IVDPPQGKKEPFHYD-GEINLLLSDWWHQSIHK-----QEVGLSSKPIRWIGEPQTILLN 173
Query: 194 -----DAHTINGKSGPLFPCSEKHT-----FAMEVESGKTYLLRIVNAALNDELFFAIAG 243
D L PC K + + V KTY +RI + L FAI
Sbjct: 174 GRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGN 233
Query: 244 HNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSR-YFMAARPFMDAPIPVDNK 302
H + VVE D Y +PF T I I G++ +VL+ DQ+PS Y+++ P +
Sbjct: 234 HQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHP---NTP 290
Query: 303 TVTAILQYKGIPNTV--LPTLP--SLPAPSDTNFALNYSSKLRSLNTPQYPANVPLRVDR 358
+L Y +PN+V LPT P PA D + + N++ ++ + P P++ +R
Sbjct: 291 PGLTLLNY--LPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKP---PVKFNR 345
Query: 359 HLFYTIGLGQNPCPSCQN--GTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTDFPDRP 416
+F + QN + ++N+++ +P L A +N+ F + P P
Sbjct: 346 RIFLL---------NTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPP--P 394
Query: 417 PV-PFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLT---VESHPFHLHGYNF 472
V P +Y N T +G + + ++++LQ+ N++ E+HP+HLHG++F
Sbjct: 395 EVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDF 454
Query: 473 FVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHT 532
+V+G G G F +++ + NL +PP RNTV + GWTAIRF ADNPGVW HCH+E H
Sbjct: 455 WVLGYGDGKFSAEEE-SSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHL 513
Query: 533 MWGLKMAF---VVENGKSPDQSIV 553
G+ + F V + G+ P +++
Sbjct: 514 HMGMGVVFAEGVEKVGRIPTKALA 537
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 161/509 (31%), Positives = 231/509 (45%), Gaps = 74/509 (14%)
Query: 49 KPIVTVNGMFPGPTIYIREGDRVLINV----TNHAQY-NMSIHWHGLKQYRNGWADGPAY 103
+ + VNG+FP P I ++GDR +NV TNH + SIHWHG Q WADGPA+
Sbjct: 22 RDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAF 81
Query: 104 ITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQPY 161
+ QCPI +G+S+ YDF+V Q GT W+H+H+ + +V PK+ + +
Sbjct: 82 VNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDN 141
Query: 162 QETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESG 221
+ T I L +W+ T G + P +DA ING G + V+ G
Sbjct: 142 ESTVITLTDWY----HTAARLGPRF---PLGADATLINGL-GRSASTPTAALAVINVQHG 193
Query: 222 KTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQS 281
K Y R+V+ + + F+I GHN+TV+E+D + ++P +I I Q + ++ A+Q+
Sbjct: 194 KRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFVLNANQT 253
Query: 282 PSRYFMAARPFMDAPIPVDNKTVTAILQYKGIP---NTVLPTLPSLPAPSDTNFALNYSS 338
Y++ A P + +AIL+Y+G P T T +P +TN
Sbjct: 254 VGNYWIRANPNFGT-VGFAGGINSAILRYQGAPVAEPTTTQTTSVIPL-IETNL-----H 306
Query: 339 KLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIG-LL 397
L + P P P VD+ L NGT +NN +F P + LL
Sbjct: 307 PLARMPVPGSP--TPGGVDKALNLAFNF---------NGTNFF--INNASFTPPTVPVLL 353
Query: 398 QAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNL 457
Q +SG D P Y PL A +STIE+ L T L
Sbjct: 354 QI----LSGAQTAQ--DLLPAGSVY---PLPA---------------HSTIEITLPATAL 389
Query: 458 LTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTV--GVPTGGW-TAIRF 514
HPFHLHG+ F VV S +N DP R+ V G P G IRF
Sbjct: 390 APGAPHPFHLHGHAFAVVRSA--------GSTTYNYNDPIFRDVVSTGTPAAGDNVTIRF 441
Query: 515 RADNPGVWFMHCHLELHTMWGLKMAFVVE 543
+ DNPG WF+HCH++ H G + F +
Sbjct: 442 QTDNPGPWFLHCHIDFHLEAGFAIVFAED 470
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 159/506 (31%), Positives = 227/506 (44%), Gaps = 69/506 (13%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQY-NMSIHWHGLKQYRNGWADGPA 102
S+ + VN +FP P I +GDR V+ N+TNH + SIHWHG Q+ WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT-VYGAIVIM-PKERTSFPFPQP 160
++ QCPI TG+++ YDF V Q GT W+H+H+ + G IV+ P++ +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKSLYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVES 220
T I L +W+ + K+G P T+DA ING G + V
Sbjct: 141 DDSTVITLADWY--------HLAAKVGSPVPTADATLINGL-GRSIDTLNADLAVITVTK 191
Query: 221 GKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280
GK Y R+V+ + + F+I GH++TV+E D+V KP T +I I Q + ++ ADQ
Sbjct: 192 GKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRYSFVLNADQ 251
Query: 281 SPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYS-SK 339
Y++ A P D +AIL+Y G P P+ TN + + +
Sbjct: 252 DVGNYWIRALP-NSGTRNFDGGVNSAILRYDG----AAPVEPTTSQTPSTNPLVESALTT 306
Query: 340 LRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIG-LLQ 398
L P PA P VD L G G + T +N +F P + LLQ
Sbjct: 307 LEGTAAPGSPA--PGGVDLALNMAFGFA---------GGKFT--INGASFTPPTVPVLLQ 353
Query: 399 AHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL 458
+GA +L S G+ S A N+ IE+ L T
Sbjct: 354 I----------------------LSGAQSAQDLLPS-GSVYSLPA-NADIEISLPATAAA 389
Query: 459 TVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPT-GGWTAIRFRAD 517
HPFHLHG+ F VV S + +N +P R+ V + G IRFR D
Sbjct: 390 PGFPHPFHLHGHTFAVVRSA--------GSSTYNYENPVYRDVVSTGSPGDNVTIRFRTD 441
Query: 518 NPGVWFMHCHLELHTMWGLKMAFVVE 543
NPG WF+HCH++ H G + +
Sbjct: 442 NPGPWFLHCHIDFHLEAGFAVVMAED 467
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 159/507 (31%), Positives = 227/507 (44%), Gaps = 71/507 (14%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQY-NMSIHWHGLKQYRNGWADGPA 102
S+ + VN +FP P I +GDR V+ N+TNH + SIHWHG Q+ WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT-VYGAIVIM-PKERTSFPFPQP 160
++ QCPI TG+++ YDF V Q GT W+H+H+ + G IV+ P + + +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVES 220
T I L +W+ + K+G P T+DA ING G + V
Sbjct: 141 DDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 221 GKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280
GK Y R+V+ + + F+I GH++TV+E D+V KP T ++ I Q + ++ ADQ
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 281 SPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYS-SK 339
Y++ A P T +AIL+Y G P P+ TN + + +
Sbjct: 252 DVDNYWIRALP-NSGTQNFAGGTNSAILRYDG----AAPVEPTTSQTPSTNPLVESALTT 306
Query: 340 LRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIG-LLQ 398
L+ P P P VD L G G T +N +F P + LLQ
Sbjct: 307 LKGTAAPGSP--TPGGVDLALNMAFGFA---------GGNFT--INGASFTPPTVPVLLQ 353
Query: 399 AHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL 458
+GA A+L G+ S A N+ IE+ L T
Sbjct: 354 I----------------------LSGAQSAADL-LPAGSVYSLPA-NADIEISLPATAAA 389
Query: 459 TVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTV--GVPTGGWTAIRFRA 516
HPFHLHG+ F VV S + +N +P R+ V G P G IRFR
Sbjct: 390 PGFPHPFHLHGHVFAVVRS--------AGSSTYNYANPVYRDVVSTGAP-GDNVTIRFRT 440
Query: 517 DNPGVWFMHCHLELHTMWGLKMAFVVE 543
DNPG WF+HCH++ H G + +
Sbjct: 441 DNPGPWFLHCHIDFHLEAGFAVVMAED 467
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 159/507 (31%), Positives = 227/507 (44%), Gaps = 71/507 (14%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQY-NMSIHWHGLKQYRNGWADGPA 102
S+ + VN +FP P I +GDR V+ N+TNH + SIHWHG Q+ WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT-VYGAIVIM-PKERTSFPFPQP 160
++ QCPI TG+++ YDF V Q GT W+H+H+ + G IV+ P + + +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVES 220
T I L +W+ + K+G P T+DA ING G + V
Sbjct: 141 DDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 221 GKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280
GK Y R+V+ + + F+I GH++TV+E D+V KP T ++ I Q + ++ ADQ
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 281 SPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYS-SK 339
Y++ A P T +AIL+Y G P P+ TN + + +
Sbjct: 252 DVDNYWIRALP-NSGTQNFAGGTNSAILRYDG----AAPVEPTTSQTPSTNPLVESALTT 306
Query: 340 LRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIG-LLQ 398
L+ P P P VD L G G T +N +F P + LLQ
Sbjct: 307 LKGTAAPGSP--TPGGVDLALNMAFGFA---------GGNFT--INGASFTPPTVPVLLQ 353
Query: 399 AHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL 458
+GA A+L G+ S A N+ IE+ L T
Sbjct: 354 I----------------------LSGAQSAADL-LPAGSVYSLPA-NADIEISLPATAAA 389
Query: 459 TVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTV--GVPTGGWTAIRFRA 516
HPFHLHG+ F VV S + +N +P R+ V G P G IRFR
Sbjct: 390 PGFPHPFHLHGHVFAVVRS--------AGSSTYNYANPVYRDVVSTGAP-GDNVTIRFRT 440
Query: 517 DNPGVWFMHCHLELHTMWGLKMAFVVE 543
DNPG WF+HCH++ H G + +
Sbjct: 441 DNPGPWFLHCHIDFHLEAGFAVVMAED 467
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 165/528 (31%), Positives = 237/528 (44%), Gaps = 86/528 (16%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-----YNMSIHWHGLKQYRNGWADGPA 102
++ V NG+FPGP I +GD INV ++ +IHWHGL Q+ WADGPA
Sbjct: 21 TRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIL-----WLRATVYGAIVIMPKERTSFPF 157
++ QCPI +GNS+ YDF V Q GT W+H+H+ LR + +V P + + +
Sbjct: 81 FVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPL---VVYDPSDPYASMY 137
Query: 158 PQPYQETNIILGEWWNSDVETIVNQGNKLG--LPPQTSDAHTINGKSGPLFPCSEKHTFA 215
T I L +W+++ KLG PP +D+ ING G +
Sbjct: 138 DVDDDTTVITLSDWYHT--------AAKLGPAFPPN-ADSVLINGL-GRFAGGNASDLAV 187
Query: 216 MEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVL 275
+ VE K Y R+V+ + + F+I GHNMT++E+D V +P +I I Q + +
Sbjct: 188 ITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFASQRYSFV 247
Query: 276 VKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALN 335
+ A QS Y++ A P I +AIL+Y G + V PT A + T+
Sbjct: 248 LNATQSVDNYWIRAIPNT-GTIDTTGGLNSAILRYSGA-DIVDPT-----ANATTSVIPL 300
Query: 336 YSSKLRSLNTPQYPAN-VPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKI 394
+ L L++P P + V VD + NGT +NN T + P +
Sbjct: 301 VETDLVPLDSPAAPGDPVVGGVDLAMNLDFSF---------NGTNFF--INNETLIPPTV 349
Query: 395 G-LLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
LLQ +SG D P YT + NSTIEL
Sbjct: 350 PVLLQI----LSGAQSAS--DLLPTGSVYT------------------LPLNSTIELSFP 385
Query: 454 DTNLLTVES-----HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPT-G 507
T + V + HPFHLHG+ F VV S + +N V+P R+TV G
Sbjct: 386 ITTVNGVTNAPGAPHPFHLHGHAFSVVRS--------AGSSDYNYVNPVRRDTVSTGNPG 437
Query: 508 GWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPP 555
IRF DN G WF+HCH++ H G + F + +PD + V P
Sbjct: 438 DNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFAED---TPDTASVNP 482
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 164/525 (31%), Positives = 236/525 (44%), Gaps = 83/525 (15%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQY-NMSIHWHGLKQYRNGWADGPA 102
S+ V VNG+ PGP + GDR V+ N+TNH + SIHWHG Q+ WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQP 160
+I QCPI G+S+ YDF V Q GT W+H+H+ + +V P + + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVES 220
+T I L +W+ T G + P +DA INGK G S ++V
Sbjct: 141 NDDTVITLADWY----HTAAKLGPRF---PGGADATLINGK-GRAPSDSVAELSVIKVTK 192
Query: 221 GKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280
GK Y R+V+ + N F+I GHN+T++E+D+V ++P +I I Q + ++ A+Q
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 281 SPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKL 340
+ Y++ A P + D +AIL+Y G P V PT N ++ +
Sbjct: 253 AVDNYWIRANPNF-GNVGFDGGINSAILRYDGAP-AVEPTT-------------NQTTSV 297
Query: 341 RSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAH 400
+ LN VD H L P P + + ++N A
Sbjct: 298 KPLN----------EVDLHP-----LVSTPVPGAPSSGGVDKAIN------------MAF 330
Query: 401 YFNISGVFRTDFPDRPP-VPF---NYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTN 456
FN S F PP VP +GA +L S + + N++IE+ T
Sbjct: 331 NFNGSNFFINGASFVPPTVPVLLQILSGAQTAQDLLPSGSVYV--LPSNASIEISFPATA 388
Query: 457 LLTVESHPFHLHGYNFFVV---GSGIGNFDPKKDPAKFNLVDPPERNTV--GVPTGGW-T 510
HPFHLHG+ F VV GS + N+D +P R+ V G P G
Sbjct: 389 AAPGAPHPFHLHGHTFAVVRSAGSTVYNYD-----------NPIFRDVVSTGTPAAGDNV 437
Query: 511 AIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPP 555
IRF +NPG WF+HCH++ H G VV +PD V P
Sbjct: 438 TIRFDTNNPGPWFLHCHIDFHLEGGFA---VVMAEDTPDVKAVNP 479
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 164/525 (31%), Positives = 236/525 (44%), Gaps = 83/525 (15%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQY-NMSIHWHGLKQYRNGWADGPA 102
S+ V VNG+ PGP + GDR V+ N+TNH + SIHWHG Q+ WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQP 160
+I QCPI G+S+ YDF V Q GT W+H+H+ + +V P + + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVES 220
+T I L +W+ T G + P +DA INGK G S ++V
Sbjct: 141 NDDTVITLADWY----HTAAKLGPRF---PGGADATLINGK-GRAPSDSVAELSVIKVTK 192
Query: 221 GKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280
GK Y R+V+ + N F+I GHN+T++E+D+V ++P +I I Q + ++ A+Q
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 281 SPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKL 340
+ Y++ A P + D +AIL+Y G P V PT N ++ +
Sbjct: 253 AVDNYWIRANPNF-GNVGFDGGINSAILRYDGAP-AVEPTT-------------NQTTSV 297
Query: 341 RSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAH 400
+ LN VD H L P P + + ++N A
Sbjct: 298 KPLN----------EVDLHP-----LVSTPVPGSPSSGGVDKAIN------------MAF 330
Query: 401 YFNISGVFRTDFPDRPP-VPF---NYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTN 456
FN S F PP VP +GA +L S + + N++IE+ T
Sbjct: 331 NFNGSNFFINGASFVPPTVPVLLQILSGAQTAQDLLPSGSVYV--LPSNASIEISFPATA 388
Query: 457 LLTVESHPFHLHGYNFFVV---GSGIGNFDPKKDPAKFNLVDPPERNTV--GVPTGGWTA 511
HPFHLHG+ F VV GS + N+D +P R+ V G P G
Sbjct: 389 AAPGAPHPFHLHGHTFAVVRSAGSTVYNYD-----------NPIFRDVVSTGTPAAGDNV 437
Query: 512 -IRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPP 555
IRF +NPG WF+HCH++ H G VV +PD V P
Sbjct: 438 TIRFDTNNPGPWFLHCHIDFHLEGGFA---VVMAEDTPDVKAVNP 479
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 151/515 (29%), Positives = 227/515 (44%), Gaps = 75/515 (14%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQYNM-SIHWHGLKQYRNGWADGPA 102
S+ V VNG+ PGP + GDR V+ N+TNH S+HWHG Q WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQP 160
+I QCPI G+S+ YDF V Q GT W+H+H+ + +V P + + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVES 220
+T I L +W+ T G + P +DA INGK S + + ++V
Sbjct: 141 NDDTVITLADWY----HTAAKLGPRF---PAGADATLINGKGRAPSDTSAELS-VIKVTK 192
Query: 221 GKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280
GK R+V+ + + F+I GHN+T++E+D+ ++P + +I I Q + ++ A+Q
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSFVLNANQ 252
Query: 281 SPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKL 340
+ Y++ A P + + +AIL+Y G P V PT N ++ +
Sbjct: 253 AVDNYWIRANPNF-GNVGFNGGINSAILRYDGAP-AVEPT-------------TNQTTSV 297
Query: 341 RSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAH 400
+ LN V+ H L P P + + ++N A
Sbjct: 298 KPLN----------EVNLHP-----LVSTPVPGSPSSGGVDKAIN------------MAF 330
Query: 401 YFNISGVF---RTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNL 457
FN S F + P PV TA G+ + + N++IE+ T
Sbjct: 331 NFNGSNFFINGASFVPPSVPVLLQILSGAQTAQDLLPSGS-VXVLPSNASIEISFPATAA 389
Query: 458 LTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTV--GVPTGGW-TAIRF 514
HPFHLHG+ F VV S +N +P R+ V G P G IRF
Sbjct: 390 APGAPHPFHLHGHTFAVVRSA--------GSTVYNYSNPIFRDVVSTGTPAAGDNVTIRF 441
Query: 515 RADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPD 549
+NPG WF+HCH++ H G VV+ PD
Sbjct: 442 LTNNPGPWFLHCHIDFHLEGGFA---VVQAEDVPD 473
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 152/508 (29%), Positives = 211/508 (41%), Gaps = 71/508 (13%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDRVLINV----TNHAQYNM-SIHWHGLKQYRNGWADGPA 102
+ + VN +FP P I GD +N+ TNH SIHWHG Q WADGPA
Sbjct: 21 ERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQP 160
+I QCPI +GNS+ YDF V GQ GT W+H+H+ + +V P + + +
Sbjct: 81 FINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLP-PQTSDAHTINGKSGPLFPCSEKHTFAMEVE 219
+ T I L +W++ KLG P+ +D+ ING G + V
Sbjct: 141 DESTVITLADWYHV--------AAKLGPRFPKGADSTLINGL-GRSTSTPTADLAVISVT 191
Query: 220 SGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKAD 279
GK Y R+V+ + + F+I H +TV+E D V T+P T +I I Q + ++ A+
Sbjct: 192 KGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNAN 251
Query: 280 QSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSK 339
Q Y++ A P D +AIL+Y P P + T L +
Sbjct: 252 QDVDNYWIRANPNFGTTGFADGVN-SAILRYDDAD-------PVEPVTNQTGTTLLLETD 303
Query: 340 LRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLN-NITFVMPKIGLLQ 398
L L + P N TQ A LN N+ F
Sbjct: 304 LHPLTSMPVPG-------------------------NPTQGGADLNLNMAFN------FD 332
Query: 399 AHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL 458
F I+G T P PV TA G+ S + NS+IE+ T
Sbjct: 333 GTNFFINGESFT--PPTVPVLLQIISGANTAQDLLPSGSVYS-LPSNSSIEITFPATTAA 389
Query: 459 TVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPT---GGWTAIRFR 515
HPFHLHG+ F VV S +N DP R+ V T G IRF+
Sbjct: 390 PGAPHPFHLHGHVFAVVRSA--------GSTSYNYDDPVWRDVVSTGTPQAGDNVTIRFQ 441
Query: 516 ADNPGVWFMHCHLELHTMWGLKMAFVVE 543
DNPG WF+HCH++ H G + +
Sbjct: 442 TDNPGPWFLHCHIDFHLDAGFAVVMAED 469
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 158/524 (30%), Positives = 226/524 (43%), Gaps = 81/524 (15%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQYNM-SIHWHGLKQYRNGWADGPA 102
S+ V VNG+ PGP + GDR V+ N+TNH S+HWHG Q WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQP 160
+I QCPI G+S+ YDF V Q GT W+H+H+ + +V P + + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLP-PQTSDAHTINGKSGPLFPCSEKHTFAMEVE 219
+T I L +W+++ KLG P +D+ INGK G S + V
Sbjct: 141 NDDTTITLADWYHTAA--------KLGPAFPNGADSTLINGK-GRAPSDSSAQLSVVSVT 191
Query: 220 SGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKAD 279
GK R+V+ + + F+I GHN T++E D+V ++P T +I I Q + + A+
Sbjct: 192 KGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFTLNAN 251
Query: 280 QSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSK 339
Q+ Y++ A P + + +AIL+Y G P V PT N S+
Sbjct: 252 QAVDNYWIRANPNF-GNVGFNGGINSAILRYDGAP-AVEPT-------------TNQSTS 296
Query: 340 LRSLN-TPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQ 398
+ LN T +P L P P + ++N
Sbjct: 297 TQPLNETNLHP----------------LVSTPVPGSPAAGGVDKAIN------------M 328
Query: 399 AHYFNISGVFRTDFPDRPP-VPF---NYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQD 454
A FN S F PP VP +GA +L S + + N++IE+
Sbjct: 329 AFNFNGSNFFINGASFTPPSVPVLLQILSGAQTAQDLLPS--GSVXTLPSNASIEISFPA 386
Query: 455 TNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTV--GVPTGGWT-A 511
T HPFHLHG+ F VV S +N +P R+ V G P G
Sbjct: 387 TAAAPGAPHPFHLHGHVFAVVRS--------AGSTVYNYSNPIFRDVVSTGTPAAGDNVT 438
Query: 512 IRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPP 555
IRF +NPG WF+HCH++ H G VV+ PD P
Sbjct: 439 IRFLTNNPGPWFLHCHIDFHLEGGFA---VVQAEDVPDVKATNP 479
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 226/520 (43%), Gaps = 75/520 (14%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDRVLINV----TNHAQYNMS-IHWHGLKQYRNGWADGPA 102
++ V VNG+ P P I +GDR +NV TNH S IHWHG Q WADGPA
Sbjct: 21 AREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQP 160
++ QCPI +G+S+ YDF V Q GT W+H+H+ + +V P + + +
Sbjct: 81 FVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDID 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLP-PQTSDAHTINGKSGPLFPCSEKHTFAMEVE 219
+T I L +W++ KLG P SD+ ING G + ++V
Sbjct: 141 NDDTVITLADWYHV--------AAKLGPRFPFGSDSTLINGL-GRTTGIAPSDLAVIKVT 191
Query: 220 SGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKAD 279
GK Y R+V+ + + F+I H MT++E D++ T+P +I I Q + ++ A
Sbjct: 192 QGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFVLDAS 251
Query: 280 QSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSK 339
Q Y++ A P +AIL+Y G P ++ + P L+ S
Sbjct: 252 QPVDNYWIRANPAF-GNTGFAGGINSAILRYDGAPEIEPTSVQTTPTKPLNEVDLHPLSP 310
Query: 340 LRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIG-LLQ 398
+ +P+ P VD+ L NGT +N+ TFV P + LLQ
Sbjct: 311 MPVPGSPE-----PGGVDKPLNLVFNF---------NGTNFF--INDHTFVPPSVPVLLQ 354
Query: 399 AHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL 458
+GA +L + + NS+IE+ T
Sbjct: 355 I----------------------LSGAQAAQDLVPEGSVFV--LPSNSSIEISFPATANA 390
Query: 459 TVESHPFHLHGYNFFVV---GSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFR 515
HPFHLHG+ F VV GS + N+D +P ++V + G P G IRF
Sbjct: 391 PGFPHPFHLHGHAFAVVRSAGSSVYNYD---NPIFRDVV------STGQP-GDNVTIRFE 440
Query: 516 ADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPP 555
+NPG WF+HCH++ H G VV +PD P
Sbjct: 441 TNNPGPWFLHCHIDFHLDAGFA---VVMAEDTPDTKAANP 477
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 158/524 (30%), Positives = 231/524 (44%), Gaps = 73/524 (13%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDRVLINVTNH-AQYNM----SIHWHGLKQYRNGWADGPA 102
++ VT G P I DR INV + NM SIHWHG Q DGPA
Sbjct: 42 ARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPA 101
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT-VYGAIVIM-PKERTSFPFPQP 160
++ QCPI S+ YDF V GQ GT W+H+H+ + GA V+ P + +
Sbjct: 102 FVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVD 161
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVES 220
T I + +W++S + T++ D ING S + V+S
Sbjct: 162 DASTVITIADWYHS-LSTVLFPNPNKAP--PAPDTTLINGLGRNSANPSAGQLAVVSVQS 218
Query: 221 GKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280
GK Y RIV+ + F+I GH MTV+E+D V +P T ++ I GQ +V+V+A+Q
Sbjct: 219 GKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQ 278
Query: 281 SPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKL 340
+ Y++ A P + +AI +Y+G PT ++ ALN ++ +
Sbjct: 279 AVGNYWIRANP-SNGRNGFTGGINSAIFRYQGAA-VAEPT-----TSQNSGTALNEANLI 331
Query: 341 RSLNTPQYPAN-VPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKI-GLLQ 398
+N P P N VP D +L IG +N T ++N F+ P + LLQ
Sbjct: 332 PLIN-PGAPGNPVPGGADINLNLRIG---------RNATTADFTINGAPFIPPTVPVLLQ 381
Query: 399 AHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL 458
+SGV T+ D P G + + N IE+ +
Sbjct: 382 I----LSGV--TNPNDLLP------------------GGAVISLPANQVIEISIPGGG-- 415
Query: 459 TVESHPFHLHGYNFFVV---GSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGW-TAIRF 514
+HPFHLHG+NF VV GS + +N V+P R+ V + GG RF
Sbjct: 416 ---NHPFHLHGHNFDVVRTPGSSV-----------YNYVNPVRRDVVSIGGGGDNVTFRF 461
Query: 515 RADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKD 558
DNPG WF+HCH++ H GL + F + P + + P D
Sbjct: 462 VTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIANAISPAWD 505
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 147/505 (29%), Positives = 220/505 (43%), Gaps = 67/505 (13%)
Query: 49 KPIVTVNGMFPGPTIYIREGDRVLINVTNH-----AQYNMSIHWHGLKQYRNGWADGPAY 103
+P V G FPGP I GD I N + SIHWHG Q WADGPA+
Sbjct: 23 RPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAF 82
Query: 104 ITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIL--WLRATVYGAIVIMPKERTSFPFPQPY 161
ITQCPI GNS++Y+FNV G GT W+H+H+ + +V P + + +
Sbjct: 83 ITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDD 142
Query: 162 QETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESG 221
T I L +W++ + + G T+D+ I+G + + VE G
Sbjct: 143 DTTIITLADWYHVLAKEMGAGG------AITADSTLIDGLGRTHVNVAAVPLSVITVEVG 196
Query: 222 KTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQS 281
K Y +R+V+ + + F+I GH+MT++E D V ++ T I I Q + ++ A+Q
Sbjct: 197 KRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQP 256
Query: 282 PSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKLR 341
Y++ A P D +AIL+Y G T + S + + L
Sbjct: 257 VGNYWIRANPNSGGE-GFDGGINSAILRYDG-----ATTADPVTVASTVHTKCLIETDLH 310
Query: 342 SLNTPQYPANVPLR--VDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQA 399
L+ P N P + D +L ++G +C N +N ++F P + +L
Sbjct: 311 PLSRNGVPGN-PHQGGADCNLNLSLGF------ACGNFV-----INGVSFTPPTVPVL-- 356
Query: 400 HYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLT 459
I +GA A+L S G+ +S + NSTIE+ L
Sbjct: 357 --LQIC-----------------SGANTAADLLPS-GSVIS-LPSNSTIEIALPAG--AA 393
Query: 460 VESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGV-PTGGWTAIRFRADN 518
HPFHLHG++F V S + N DP R+ V + G IRF DN
Sbjct: 394 GGPHPFHLHGHDFAVSES--------ASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDN 445
Query: 519 PGVWFMHCHLELHTMWGLKMAFVVE 543
PG WF+HCH++ H G + F +
Sbjct: 446 PGPWFLHCHIDWHLDAGFAIVFAED 470
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 156/541 (28%), Positives = 227/541 (41%), Gaps = 80/541 (14%)
Query: 41 NVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-----YNMSIHWHGLKQYRN 95
NVS ++ + VNG+ GP I + D +NV N SIHWHGL Q
Sbjct: 15 NVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGT 73
Query: 96 GWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI-LWLRATVYGAIVIMPKERTS 154
WADG + QCPI G+++ Y F G GT W+H+H + G +VI
Sbjct: 74 NWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPH 133
Query: 155 FPFPQPYQETNII-LGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHT 213
E II L +W++ +I QG DA INGK G
Sbjct: 134 AALYDEDDENTIITLADWYHIPAPSI--QG------AAQPDATLINGK-GRYVGGPAAEL 184
Query: 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTN 273
+ VE GK Y +R+++ + + F+I GH +T++E+D T+P T + I GQ +
Sbjct: 185 SIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYS 244
Query: 274 VLVKADQSPSRYFMAARPFMDA---PIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDT 330
++ A+Q Y++ A+P N +AIL+Y G N PT + P P+
Sbjct: 245 FVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANAD-PTTSANPNPAQL 303
Query: 331 NFALNYSSKLRSLNTPQYPA-NVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITF 389
N A L +L P P P D +L + +G +G + T +N +
Sbjct: 304 NEA-----DLHALIDPAAPGIPTPGAADVNLRFQLGF---------SGGRFT--INGTAY 347
Query: 390 VMPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIE 449
P + P +AN G+ + ++ N +E
Sbjct: 348 ESPSV----------------------PTLLQIMSGAQSANDLLPAGS-VYELPRNQVVE 384
Query: 450 LVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVP-TGG 508
LV+ L HPFHLHG+ F VV S + +N V+P +R+ V + TG
Sbjct: 385 LVVPAGVLGG--PHPFHLHGHAFSVVRS--------AGSSTYNFVNPVKRDVVSLGVTGD 434
Query: 509 WTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPP--------KDLP 560
IRF DNPG WF HCH+E H M GL + F + + D + P DLP
Sbjct: 435 EVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPPVEWAQLCEIYDDLP 494
Query: 561 P 561
P
Sbjct: 495 P 495
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 156/541 (28%), Positives = 227/541 (41%), Gaps = 80/541 (14%)
Query: 41 NVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-----YNMSIHWHGLKQYRN 95
NVS ++ + VNG+ GP I + D +NV N SIHWHGL Q
Sbjct: 15 NVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGT 73
Query: 96 GWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI-LWLRATVYGAIVIMPKERTS 154
WADG + QCPI G+++ Y F G GT W+H+H + G +VI
Sbjct: 74 NWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPH 133
Query: 155 FPFPQPYQETNII-LGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHT 213
E II L +W++ +I QG DA INGK G
Sbjct: 134 AALYDEDDENTIITLADWYHIPAPSI--QG------AAQPDATLINGK-GRYVGGPAAEL 184
Query: 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTN 273
+ VE GK Y +R+++ + + F+I GH +T++E+D T+P T + I GQ +
Sbjct: 185 SIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYS 244
Query: 274 VLVKADQSPSRYFMAARPFMDA---PIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDT 330
++ A+Q Y++ A+P N +AIL+Y G N PT + P P+
Sbjct: 245 FVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANAD-PTTSANPNPAQL 303
Query: 331 NFALNYSSKLRSLNTPQYPA-NVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITF 389
N A L +L P P P D +L + +G +G + T +N +
Sbjct: 304 NEA-----DLHALIDPAAPGIPTPGAADVNLRFQLGF---------SGGRFT--INGTAY 347
Query: 390 VMPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIE 449
P + P +AN G+ + ++ N +E
Sbjct: 348 ESPSV----------------------PTLLQIMSGAQSANDLLPAGS-VYELPRNQVVE 384
Query: 450 LVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVP-TGG 508
LV+ L HPFHLHG+ F VV S + +N V+P +R+ V + TG
Sbjct: 385 LVVPAGVLGG--PHPFHLHGHAFSVVRS--------AGSSTYNFVNPVKRDVVSLGVTGD 434
Query: 509 WTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPP--------KDLP 560
IRF DNPG WF HCH+E H M GL + F + + D + P DLP
Sbjct: 435 EVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPPVEWAQLCEIYDDLP 494
Query: 561 P 561
P
Sbjct: 495 P 495
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 148/511 (28%), Positives = 211/511 (41%), Gaps = 75/511 (14%)
Query: 40 KNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWA 98
+NV L S+P++T NG FP P I + +GDRV I +TN N S+H+HGL Q
Sbjct: 14 RNVDGL-KSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASM 72
Query: 99 DGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKERTSFPFP 158
DG ++TQCPI G++ Y+F V GT W+H+H + I+ + SFP+
Sbjct: 73 DGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDD--SFPYD 130
Query: 159 QPYQETNIILGEWWNSDV----ETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTF 214
+E ++ L EW++ V ++ ++ N G P + +
Sbjct: 131 YD-EELSLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQN-----------LIVNNTMNL 178
Query: 215 AMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNV 274
EV+ TYLLRIVN +F I H MTVVEID + T+ T + I Q V
Sbjct: 179 TWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTV 238
Query: 275 LVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFAL 334
LV + F + F D + V + + LQ V +LP N+
Sbjct: 239 LVHTKNDTDKNFAIMQKFDDTMLDV----IPSDLQLNATSYMVYNKTAALPTQ---NYVD 291
Query: 335 NYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKI 394
+ + L Y H+ + N +NG A NNIT+ PK+
Sbjct: 292 SIDNFLDDFYLQPYEKEAIYGEPDHVITVDVVMDN----LKNGVNY-AFFNNITYTAPKV 346
Query: 395 GLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAF--NSTIELVL 452
P + AN G+ + +E+VL
Sbjct: 347 ----------------------PTLMTVLSSGDQANNSEIYGSNTHTFILEKDEIVEIVL 384
Query: 453 --QDTNLLTVESHPFHLHGYNFFVV----------GSGIGNFDPKKDPAKFNLVDPPERN 500
QDT +HPFHLHG+ F + G +FDP PA P R+
Sbjct: 385 NNQDTG-----THPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEY--PMRRD 437
Query: 501 TVGVPTGGWTAIRFRADNPGVWFMHCHLELH 531
T+ V IRF+ADNPGVWF HCH+E H
Sbjct: 438 TLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 155/531 (29%), Positives = 234/531 (44%), Gaps = 87/531 (16%)
Query: 36 DVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-MSIHWHGLKQYR 94
D +KNV L N K I GPTI GD + + V N+ + N S+HWHGL+Q
Sbjct: 91 DGVLKNVVMLVNDKII--------GPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLG 142
Query: 95 NGWADGPAYITQCPIK-TGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKERT 153
N + DG +T+CPI G TY F T Q GT W+H+H + YG V+ +
Sbjct: 143 NVFNDGANGVTECPIPPKGGRKTYKFRAT-QYGTSWYHSHF----SAQYGNGVVGTIQ-I 196
Query: 154 SFPFPQPYQETNIILG-----EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFP- 207
P PY +I LG +++ + +V+ G PP SD NG + P
Sbjct: 197 DGPASLPY---DIDLGVFPLMDYYYRSADELVHFTQSNGAPP--SDNVLFNGTA--RHPE 249
Query: 208 CSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIA 267
+ + + GK + LRI+N + ++ ++ GHNMTV+ D V FT ++ +A
Sbjct: 250 TGAGQWYNVTLTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLA 309
Query: 268 PGQTTNVLVKADQSPSRYFMAARPFMDAPI-PVDNKTVTAILQYKGIPNTVLPTLPSLPA 326
GQ +V + A+ Y+ F D +NK AI +Y+G P T LPT LP
Sbjct: 310 VGQRYDVTIDANSPVGNYWFNVT-FGDGLCGSSNNKFPAAIFRYQGAPAT-LPTDQGLPV 367
Query: 327 PSDTNFALNYSSKLRSLN-TPQYPANVPL-----RVDRHLFYTIGLGQNPCPSCQNGTQL 380
P+ L +LN TP + P+ R L T+ +G P ++
Sbjct: 368 PNHM--------CLDNLNLTPVVTRSAPVNNFVKRPSNTLGVTLDIGGTPLFVW----KV 415
Query: 381 TASLNNITFVMPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLS 440
S N+ + P + + + T P++ N+ ++
Sbjct: 416 NGSAINVDWGKPILDYVMS---------------------GNTSYPVSDNI-----VQVD 449
Query: 441 KVAFNSTIELVLQD-TNLLTVESHPFHLHGYNFFVVG--------SGIGN-FDPKKDPAK 490
V T L+ D TN + HP HLHG++F V+G +G+ + FDP KD +
Sbjct: 450 AVD-QWTYWLIENDPTNPIVSLPHPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPR 508
Query: 491 FNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFV 541
+P R+ +P GGW + F+ DNPG W HCH+ H GL + F+
Sbjct: 509 LKGNNPVRRDVTMLPAGGWLLLAFKTDNPGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 138/273 (50%), Gaps = 18/273 (6%)
Query: 48 SKPIVTVNGMFPGPTIYIREGDR----VLINVTNHAQY-NMSIHWHGLKQYRNGWADGPA 102
S+ V VNG PGP I GDR V+ N+TNH + SIHWHG Q WADGPA
Sbjct: 21 SRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPA 80
Query: 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTSFPFPQP 160
+I QCPI +G+S+ YDF V Q GT W+H+H+ + +V P + + +
Sbjct: 81 FINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVD 140
Query: 161 YQETNIILGEWWNSDVETIVNQGNKLGLP-PQTSDAHTINGKSGPLFPCSEKHTFAMEVE 219
+T I L +W++ KLG P +DA INGK G + + V
Sbjct: 141 NDDTVITLVDWYHV--------AAKLGPAFPLGADATLINGK-GRSPSTTTADLSVISVT 191
Query: 220 SGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKAD 279
GK Y R+V+ + + F+I GHNMT++E D++ T P +I I Q + +++A+
Sbjct: 192 PGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEAN 251
Query: 280 QSPSRYFMAARPFMDAPIPVDNKTVTAILQYKG 312
Q+ Y++ A P + +AIL+Y G
Sbjct: 252 QAVDNYWIRANPNF-GNVGFTGGINSAILRYDG 283
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 445 NSTIELVLQDTNLLTVESHPFHLHGYNFFVV---GSGIGNFDPKKDPAKFNLVDPPERNT 501
N+ IE+ T HPFHLHG+ F VV GS + N+D +P R+
Sbjct: 377 NADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTVYNYD-----------NPIFRDV 425
Query: 502 V--GVPTGGW-TAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVE 543
V G P G IRFR DNPG WF+HCH++ H G + F +
Sbjct: 426 VSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAED 470
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 146/522 (27%), Positives = 218/522 (41%), Gaps = 87/522 (16%)
Query: 49 KPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-MSIHWHGLKQYRNGWADGPAYITQC 107
+ ++ +NG GP I GD V + V N+ N SIHWHG+ Q DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTEC 114
Query: 108 PIK-TGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKERTSFPFPQPYQETNI 166
PI G TY + Q GT W+H+H + YG V+ + + P PY +I
Sbjct: 115 PIPPKGGQRTYRWRAR-QYGTSWYHSHF----SAQYGNGVVGTIQ-INGPASLPY---DI 165
Query: 167 ILG-----EWWNSDVETIVN--QGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFA-MEV 218
LG +++ + +V+ Q N P SD ING + + P + + +A + +
Sbjct: 166 DLGVFPITDYYYRAADDLVHFTQNNA----PPFSDNVLINGTA--VNPNTGEGQYANVTL 219
Query: 219 ESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKA 278
GK + LRI+N + + ++ H MTV+ D V T ++ +A GQ +V++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 279 DQSPSRYFMAARPFMDAPIPVD-NKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYS 337
++P Y+ A N AI Y G P LPT P P D
Sbjct: 280 SRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGG-LPTDEGTP-PVD-------H 330
Query: 338 SKLRSLNT-PQYPANVPL-----RVDRHLFYTIGLGQNPCPSCQ-NGTQLTASLNNITFV 390
L +L+ P P +VP+ R D L + L P + NG+ + N+ +
Sbjct: 331 QCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDI-----NVDWG 385
Query: 391 MPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKV--AFNSTI 448
P I + LT N + + +V T
Sbjct: 386 KPIIDYI-----------------------------LTGNTSYPVSDNIVQVDAVDQWTY 416
Query: 449 ELVLQDTNLLTVESHPFHLHGYNFFVVGSGIG---------NFDPKKDPAKFNLVDPPER 499
L+ D HP HLHG++F V+G FDP D A+ N +PP R
Sbjct: 417 WLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRR 476
Query: 500 NTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFV 541
+T +P GGW + FR DNPG W HCH+ H GL + F+
Sbjct: 477 DTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 146/522 (27%), Positives = 218/522 (41%), Gaps = 87/522 (16%)
Query: 49 KPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-MSIHWHGLKQYRNGWADGPAYITQC 107
+ ++ +NG GP I GD V + V N+ N SIHWHG+ Q DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTEC 114
Query: 108 PIK-TGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKERTSFPFPQPYQETNI 166
PI G TY + Q GT W+H+H + YG V+ + + P PY +I
Sbjct: 115 PIPPKGGQRTYRWRAR-QYGTSWYHSHF----SAQYGNGVVGTIQ-INGPASLPY---DI 165
Query: 167 ILG-----EWWNSDVETIVN--QGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFA-MEV 218
LG +++ + +V+ Q N P SD ING + + P + + +A + +
Sbjct: 166 DLGVFPITDYYYRAADDLVHFTQNNA----PPFSDNVLINGTA--VNPNTGEGQYANVTL 219
Query: 219 ESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKA 278
GK + LRI+N + + ++ H MTV+ D V T ++ +A GQ +V++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 279 DQSPSRYFMAARPFMDAPIPVD-NKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYS 337
++P Y+ A N AI Y G P LPT P P D
Sbjct: 280 SRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGG-LPTDEGTP-PVD-------H 330
Query: 338 SKLRSLNT-PQYPANVPL-----RVDRHLFYTIGLGQNPCPSCQ-NGTQLTASLNNITFV 390
L +L+ P P +VP+ R D L + L P + NG+ + N+ +
Sbjct: 331 QCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDI-----NVDWG 385
Query: 391 MPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKV--AFNSTI 448
P I + LT N + + +V T
Sbjct: 386 KPIIDYI-----------------------------LTGNTSYPVSDNIVQVDAVDQWTY 416
Query: 449 ELVLQDTNLLTVESHPFHLHGYNFFVVGSGIG---------NFDPKKDPAKFNLVDPPER 499
L+ D HP HLHG++F V+G FDP D A+ N +PP R
Sbjct: 417 WLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRR 476
Query: 500 NTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFV 541
+T +P GGW + FR DNPG W HCH+ H GL + F+
Sbjct: 477 DTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 146/522 (27%), Positives = 218/522 (41%), Gaps = 87/522 (16%)
Query: 49 KPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-MSIHWHGLKQYRNGWADGPAYITQC 107
+ ++ +NG GP I GD V + V N+ N SIHWHG+ Q DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTEC 114
Query: 108 PIK-TGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKERTSFPFPQPYQETNI 166
PI G TY + Q GT W+H+H + YG V+ + + P PY +I
Sbjct: 115 PIPPKGGQRTYRWRAR-QYGTSWYHSHF----SAQYGNGVVGTIQ-INGPASLPY---DI 165
Query: 167 ILG-----EWWNSDVETIVN--QGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFA-MEV 218
LG +++ + +V+ Q N P SD ING + + P + + +A + +
Sbjct: 166 DLGVFPITDYYYRAADDLVHFTQNNA----PPFSDNVLINGTA--VNPNTGEGQYANVTL 219
Query: 219 ESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKA 278
GK + LRI+N + + ++ H MTV+ D V T ++ +A GQ +V++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 279 DQSPSRYFMAARPFMDAPIPVD-NKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYS 337
++P Y+ A N AI Y G P LPT P P D
Sbjct: 280 SRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGG-LPTDEGTP-PVD-------H 330
Query: 338 SKLRSLNT-PQYPANVPL-----RVDRHLFYTIGLGQNPCPSCQ-NGTQLTASLNNITFV 390
L +L+ P P +VP+ R D L + L P + NG+ + N+ +
Sbjct: 331 QCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDI-----NVDWG 385
Query: 391 MPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKV--AFNSTI 448
P I + LT N + + +V T
Sbjct: 386 KPIIDYI-----------------------------LTGNTSYPVSDNIVQVDAVDQWTY 416
Query: 449 ELVLQDTNLLTVESHPFHLHGYNFFVVGSGIG---------NFDPKKDPAKFNLVDPPER 499
L+ D HP HLHG++F V+G FDP D A+ N +PP R
Sbjct: 417 WLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRR 476
Query: 500 NTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFV 541
+T +P GGW + FR DNPG W HCH+ H GL + F+
Sbjct: 477 DTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 18/283 (6%)
Query: 42 VSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNH-AQYNM----SIHWHGLKQYRNG 96
V+ +S+ V VNG PGP I +GD+ +NV N+ + M S+HWHG Q
Sbjct: 15 VAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTN 74
Query: 97 WADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI--LWLRATVYGAIVIMPKERTS 154
WADGPA++ QCPI G+S+ YDF+ Q GT W+H+H+ + +V P + ++
Sbjct: 75 WADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPNDPSA 134
Query: 155 FPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKS-GPLFPCSEKHT 213
+ T I L +W+++ + + P +DA ING+ GP P ++
Sbjct: 135 NLYDVDNLNTVITLTDWYHTAAQNGPAK-------PGGADATLINGQGRGPSSPSADLAV 187
Query: 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTN 273
+ V +GK Y R+V+ + + F+I GH MT++++D++ +P I I Q +
Sbjct: 188 --ISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIYAAQRYS 245
Query: 274 VLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNT 316
++ A+Q+ + Y++ A P + N +AIL+Y G T
Sbjct: 246 FILNANQAVNNYWIRANP-NQGNVGFTNGINSAILRYSGAAAT 287
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 445 NSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTV-- 502
++ IE+ T+ HPFHLHG+ F VV S +N DP R+TV
Sbjct: 377 DANIEISFPATSAAAGGPHPFHLHGHAFAVVRS--------AGSTTYNYNDPIFRDTVST 428
Query: 503 GVPTGG-WTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVE 543
G P IRF+ +NPG WF+HCH++ H G + F +
Sbjct: 429 GTPAANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVFAQD 470
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 143/294 (48%), Gaps = 24/294 (8%)
Query: 31 KKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-MSIHWHG 89
++Y V+ ++ ++ +T NG PGP I GD ++I+VTN+ ++N SIHWHG
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 90 LKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI-LWLRATVYGAIVIM 148
++Q + DG +TQCPI G++ TY F VT Q GT W+H+H L ++G ++I
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLII- 185
Query: 149 PKERTSFPFPQPYQETN--IILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLF 206
+ P Y E I L +W + V I + +LG PP + +NG + F
Sbjct: 186 -----NGPATADYDEDVGVIFLQDWAHESVFEIWDTA-RLGAPPALENT-LMNGTN--TF 236
Query: 207 PCSEK---------HTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTK 257
CS F + G Y LR++N ++ FAI H +TV+ D V
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 258 PFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYK 311
P+TT +LI GQ +V+V+A+ + Y++ + T IL+Y
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYD 350
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVW 522
HP HLHG++FF+V F+ + PAKFNLV+PP R+ +P G+ AI F+ DNPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 523 FMHCHLELHTMWGLKMAFV 541
+HCH+ H G+ M FV
Sbjct: 523 LLHCHIAWHASEGMAMQFV 541
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 143/294 (48%), Gaps = 24/294 (8%)
Query: 31 KKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-MSIHWHG 89
++Y V+ ++ ++ +T NG PGP I GD ++I+VTN+ ++N SIHWHG
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 90 LKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI-LWLRATVYGAIVIM 148
++Q + DG +TQCPI G++ TY F VT Q GT W+H+H L ++G ++I
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLII- 185
Query: 149 PKERTSFPFPQPYQETN--IILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLF 206
+ P Y E I L +W + V I + +LG PP + +NG + F
Sbjct: 186 -----NGPATADYDEDVGVIFLQDWAHESVFEIWDTA-RLGAPPALENT-LMNGTN--TF 236
Query: 207 PCSEK---------HTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTK 257
CS F + G Y LR++N ++ FAI H +TV+ D V
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 258 PFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYK 311
P+TT +LI GQ +V+V+A+ + Y++ + T IL+Y
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYD 350
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 51/79 (64%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVW 522
HP HLHG++FF+V F+ + PAKFNLV+PP R+ +P G+ AI F+ DNPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 523 FMHCHLELHTMWGLKMAFV 541
+HCH+ H GL M FV
Sbjct: 523 LLHCHIAWHASEGLAMQFV 541
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 34/263 (12%)
Query: 31 KKYQFDVQVKNVSRLCNSKP---IVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHW 87
+K +FD+ +++ + K NG P P I++ EGD V +NVTN +IHW
Sbjct: 1 EKREFDLSIEDTRIVLVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHW 60
Query: 88 HGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHI-----LWLRATVY 142
HG+ Q +DG + TQ I+ G+++TY F GT+W+H H+ + +R ++
Sbjct: 61 HGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAE-PAGTMWYHCHVNVNEHVTMRG-MW 118
Query: 143 GAIVIMPKERTSFPFPQPYQETN-----IILGEWWNSDVETIVNQGNKLGLPPQTSDAHT 197
G +++ PK P P ++T ++L +W V + N+ + G+P D +T
Sbjct: 119 GPLIVEPKN------PLPIEKTVTKDYILMLSDW----VSSWANKPGEGGIPGDVFDYYT 168
Query: 198 INGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAV-YT 256
IN KS P T + V+ G LR++ A + GH + D
Sbjct: 169 INAKSFP-------ETQPIRVKKGDVIRLRLIGAGDHVHAIHT-HGHISQIAFKDGFPLD 220
Query: 257 KPFTTQAILIAPGQTTNVLVKAD 279
KP +LI PG+ +V++ D
Sbjct: 221 KPIKGDTVLIGPGERYDVILNMD 243
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 491 FNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQ 550
F L P + +TV + G + DNPG+W +H H++ HT NG PD
Sbjct: 217 FPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTT----------NGDKPDG 266
Query: 551 SIV 553
I+
Sbjct: 267 GIM 269
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 27/249 (10%)
Query: 51 IVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIK 110
++T G FPGPT+ +R D V + + N ++HWHGL D P I
Sbjct: 37 LLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPISPK--VDDPF----LEIP 90
Query: 111 TGNSYTYDFNVTGQ-RGTLWWHAHIL-----WLRATVYGAIVIMPKERTSFPFPQPYQET 164
G S+TY+F V + GT W+H H+ L A + GA+V+ + P + +E
Sbjct: 91 PGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVV-ESSLDAIPELREAEEH 149
Query: 165 NIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTY 224
++L + + QG G P + +NGK G L + + V T
Sbjct: 150 LLVLKD--------LALQG---GRPAPHTPMDWMNGKEGDLVLVNGALRPTL-VAQKATL 197
Query: 225 LLRIVNAALNDELFFAIAGHNMTVVEIDAVY-TKPFTTQAILIAPGQTTNVLVKADQSPS 283
LR++NA+ A+ H + ++ D + +P +L+APG+ VLV+ +
Sbjct: 198 RLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRLRKE-G 256
Query: 284 RYFMAARPF 292
R+ + A P+
Sbjct: 257 RFLLQALPY 265
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 53 TVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTG 112
+ NG PGPT++ REGD + I+ TN + +IH+HG+ + DG I I G
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHR---ATMDGTPGIGAGSIAPG 114
Query: 113 NSYTYDFNVTGQRGTLWWHAH----ILWLRATVYGAIVIMPKE 151
S+TY+F+ T GT +H H + +YG ++ PKE
Sbjct: 115 QSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKE 156
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 112/514 (21%), Positives = 184/514 (35%), Gaps = 87/514 (16%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393
L+ L S + S + G Q A +++ + +M
Sbjct: 325 LSMDPSLDSSGSQSL------------------------SEKYGDQAMAGMDH-SQMMGH 359
Query: 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
+G ++ N G F ++ N + + + + + + +++L
Sbjct: 360 MGHGNMNHMNHGGKFDFHHANK----INGQAFDMNKPMFAAAKGQYERWVISGVGDMML- 414
Query: 454 DTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513
HPFH+HG F ++ P A + E N V ++
Sbjct: 415 ---------HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVK 457
Query: 514 FRADNPG--VWFMHCHLELHTMWGLKMAFVVENG 545
F D P + HCHL H G+ + F V G
Sbjct: 458 FNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQG 491
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/514 (21%), Positives = 187/514 (36%), Gaps = 87/514 (16%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393
L+ L + + + ++++ G Q A +++ + +M
Sbjct: 325 LSMDPMLDMM-------GMQMLMEKY-----------------GDQAMAGMDH-SQMMGH 359
Query: 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
+G ++ N G F ++ N + + + + + + +++L
Sbjct: 360 MGHGNMNHMNHGGKFDFHHANK----INGQAFDMNKPMFAAAKGQYERWVISGVGDMML- 414
Query: 454 DTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513
HPFH+HG F ++ P A + E N V ++
Sbjct: 415 ---------HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVK 457
Query: 514 FRADNPG--VWFMHCHLELHTMWGLKMAFVVENG 545
F D P + HCHL H G+ + F V G
Sbjct: 458 FNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQG 491
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/514 (21%), Positives = 187/514 (36%), Gaps = 87/514 (16%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393
L+ L + + + ++++ G Q A +++ + +M
Sbjct: 325 LSMDPMLDMM-------GMQMLMEKY-----------------GDQAMAGMDH-SQMMGH 359
Query: 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
+G ++ N G F ++ N + + + + + + +++L
Sbjct: 360 MGHGNMNHMNHGGKFDFHHANK----INGQAFDMNKPMFAAAKGQYERWVISGVGDMML- 414
Query: 454 DTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513
HPFH+HG F ++ P A + E N V ++
Sbjct: 415 ---------HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVK 457
Query: 514 FRADNPG--VWFMHCHLELHTMWGLKMAFVVENG 545
F D P + HCHL H G+ + F V G
Sbjct: 458 FNHDAPKEHAYMAHCHLLEHDDTGMMLGFTVLQG 491
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 110/518 (21%), Positives = 188/518 (36%), Gaps = 87/518 (16%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393
L+ L + + + ++++ G Q A +++ + +M
Sbjct: 325 LSMDPMLDMM-------GMQMLMEKY-----------------GDQAMAGMDH-SQMMGH 359
Query: 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
+G ++ N G F ++ N + + + + + + +++L
Sbjct: 360 MGHGNMNHMNHGGKFDFHHANK----INGQAFDMNKPMFAAAKGQYERWVISGVGDMLL- 414
Query: 454 DTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513
HPFH+HG F ++ P A + E N V ++
Sbjct: 415 ---------HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVK 457
Query: 514 FRADNPG--VWFMHCHLELHTMWGLKMAFVVENGKSPD 549
F D P + HCHL H G+ + F V P+
Sbjct: 458 FNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVSAWSHPN 495
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 32/244 (13%)
Query: 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADG--PAYITQCPIKTGNSYTYD 118
PTI +R G RV + + N +HWHG + W + P++ I G SY Y
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHG---FDVNWHNDAHPSF----AITPGESYNYS 90
Query: 119 FNVTGQRGTLWWHAHILWLRATVYG----AIVIMPKERTSFPFPQPYQETNIILGEWWNS 174
F+V + GT +H H L A + +VI+ + F + +++ +
Sbjct: 91 FDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPLVISDRRFI 150
Query: 175 DVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALN 234
+ N + +A +NG +F SG +Y LR+VN +
Sbjct: 151 GGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKL-----------SGGSYRLRLVNGSNA 199
Query: 235 DELFFAIAGHN-----MTVVEIDAVY-TKPFTTQAILIAPGQTTNVLVKADQSPSRYFMA 288
+I N M ++ +D + +P +A+ +AP + V+V+ + Y +
Sbjct: 200 RLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELGEGV--YLLK 257
Query: 289 ARPF 292
PF
Sbjct: 258 NTPF 261
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 123/321 (38%), Gaps = 38/321 (11%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPL 354
L+ +N + N P+
Sbjct: 325 LSMDGGANKINGQAFDMNKPM 345
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPG-- 520
HPFH+HG F ++ P A + E N V ++F D P
Sbjct: 367 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVKFNHDAPKEH 418
Query: 521 VWFMHCHLELHTMWGLKMAFVV 542
+ HCHL H G+ + F V
Sbjct: 419 AYMAHCHLLEHEDTGMMLGFTV 440
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 28/233 (12%)
Query: 53 TVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTG 112
T NG+ P P I + EGD++ I V N + +IHWHG+ + DG + PI G
Sbjct: 74 TYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPD--QDGSPH---DPILAG 128
Query: 113 NSYTYDFNV-TGQRGTLWWHAHILWLRAT-----VYGAIVIMPKERTSFPFPQPYQETNI 166
Y F + GT W+H H + + + GA VI K+ +E ++
Sbjct: 129 EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDAL----SHLKEKDL 184
Query: 167 ILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLL 226
++ + + I P + +NG+ G + + F +++ +
Sbjct: 185 MISDLRLDENAQI----------PNNNLNDWLNGREGEFVLINGQ--FKPKIKLATNERI 232
Query: 227 RIVNAALNDELFFAIAGHNMTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA 278
RI NA L I G +V D + K + + ++P VL+ A
Sbjct: 233 RIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDA 285
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 462 SHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGV 521
HPFH+HG F ++ S + K A+F + R+T+ V +R + D G+
Sbjct: 406 DHPFHIHGTQFELISSKLNG---KVQKAEFRAL----RDTINVRPNEELRLRMKQDFKGL 458
Query: 522 WFMHCHLELHTMWGL 536
HCH+ H G+
Sbjct: 459 RMYHCHILEHEDLGM 473
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 109/511 (21%), Positives = 186/511 (36%), Gaps = 87/511 (17%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393
L+ L + + + ++++ G Q A +++ + +M
Sbjct: 325 LSMDPMLDMM-------GMQMLMEKY-----------------GDQAMAGMDH-SQMMGH 359
Query: 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
+G ++ N G F ++ N + + + + + + +++L
Sbjct: 360 MGHGNMNHMNHGGKFDFHHANK----INGQAFDMNKPMFAAAKGQYERWVISGVGDMML- 414
Query: 454 DTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513
HPFH+HG F ++ P A + E N V ++
Sbjct: 415 ---------HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVK 457
Query: 514 FRADNPG--VWFMHCHLELHTMWGLKMAFVV 542
F D P + HCHL H G+ + F V
Sbjct: 458 FNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 109/514 (21%), Positives = 186/514 (36%), Gaps = 87/514 (16%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393
L+ L + + + ++++ G Q A +++ + +M
Sbjct: 325 LSMDPMLDMM-------GMQMLMEKY-----------------GDQAMAGMDH-SQMMGH 359
Query: 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
+G ++ N G F ++ N + + + + + + +++L
Sbjct: 360 MGHGNMNHMNHGGKFDFHHANK----INGQAFDMNKPMFAAAKGQYERWVISGVGDMML- 414
Query: 454 DTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513
HPFH+HG F ++ P A + E N V ++
Sbjct: 415 ---------HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVK 457
Query: 514 FRADNPG--VWFMHCHLELHTMWGLKMAFVVENG 545
F D P + H HL H G+ + F V G
Sbjct: 458 FNHDAPKEHAYMAHSHLLEHEDTGMMLGFTVLQG 491
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 108/511 (21%), Positives = 185/511 (36%), Gaps = 87/511 (17%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG GP + ++ G V +++ N ++HWHGL+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 115 YTYDFNVTGQRGTLWWHAHI-----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILG 169
+ NV T W+H H + + G +VI E P+
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPK---------- 146
Query: 170 EWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAM--EVESGKTYL-L 226
+W DV IV Q K Q + + F + A+ + + + +L L
Sbjct: 147 QWGIDDVPVIV-QDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRL 205
Query: 227 RIVNAALNDELFFAIAGHN-MTVVEID-AVYTKPFTTQAILIAPGQTTNVLVKA-DQSP- 282
R++N L FA + + + V+ D + +P + + G+ VLV+ D P
Sbjct: 206 RLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPF 265
Query: 283 -------SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTV--LPTLPSLPAPSDTNFA 333
S+ MA PF D P PV AI +P+T+ LP LPSL +
Sbjct: 266 DLVTLPVSQMGMAIAPF-DKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQ 324
Query: 334 LNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393
L+ L + + + ++++ G Q A +++ + +M
Sbjct: 325 LSMDPMLDMM-------GMQMLMEKY-----------------GDQAMAGMDH-SQMMGH 359
Query: 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQ 453
+G ++ N G F ++ N + + + + + + +++L
Sbjct: 360 MGHGNMNHMNHGGKFDFHHANK----INGQAFDMNKPMFAAAKGQYERWVISGVGDMML- 414
Query: 454 DTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513
HPFH+HG F ++ P A + E N V ++
Sbjct: 415 ---------HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEV------LVK 457
Query: 514 FRADNPG--VWFMHCHLELHTMWGLKMAFVV 542
F D P + H HL H G+ + F V
Sbjct: 458 FNHDAPKEHAYMAHSHLLEHQDTGMMLGFTV 488
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 33 YQFDVQVK----NVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWH 88
+ ++V++K V S +V +GM PGPT + G ++ N+A+ S+H H
Sbjct: 37 WYYEVEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLH 96
Query: 89 G--LKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRA 139
G + +GWA+ IT+ G+ Y + TLW+H H + + A
Sbjct: 97 GSFSRAAFDGWAED---ITEP----GSFKDYYYPNRQSARTLWYHDHAMHITA 142
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 22/139 (15%)
Query: 417 PVPFNYTGAPLTANLGTSLGT-RLSKVAFNSTIELVLQDTNLLTVE-----------SHP 464
P P T P G + T ++ VAF +L + + TVE +HP
Sbjct: 340 PFPSPTTNTPRQFRFGRTGPTWTINGVAFADVQNRLLANVPVGTVERWELINAGNGWTHP 399
Query: 465 FHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDP---PERNTVGVPTGGWTAIRFRADNPGV 521
H+H +F V+ GN P + L D R TV V A PGV
Sbjct: 400 IHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWLGRRETVVVEA-------HYAPFPGV 452
Query: 522 WFMHCHLELHTMWGLKMAF 540
+ HCH +H + AF
Sbjct: 453 YMFHCHNLIHEDHDMMAAF 471
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 463 HPFHLHGYNFFVVGSGI--GNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPG 520
H FHLHG+ + +G+ +DP L+D + N GV G + I PG
Sbjct: 212 HTFHLHGHRWLDNRTGMRTSEYDPSP------LIDIKDLNP-GVSFG-FQVIAGEGVGPG 263
Query: 521 VWFMHCHLELHTMWGLKMAFVVEN 544
+W HCH++ H+ G+ F+V N
Sbjct: 264 MWMYHCHVQNHSDMGMAGMFLVRN 287
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 104/268 (38%), Gaps = 42/268 (15%)
Query: 59 PGPTIYIREGDRVLINVTNHAQYNM--SIHWHGLKQYRNGWADGPAYITQCPIKTGNSYT 116
PG I +REGD + N++NH M +I H + G G P G++ T
Sbjct: 58 PGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT----GPGGGAESSFTAP---GHTST 110
Query: 117 YDFNVTGQRGTLWWHAHI----LWLRATVYGAIVIMPKERTSFPFPQPYQETNIILGEWW 172
++F G +H + + +YG I++ PKE + P + Y ++ G+++
Sbjct: 111 FNFKAL-NPGLYIYHCATAPVGMHIANGMYGLILVEPKEGLA-PVDREYY---LVQGDFY 165
Query: 173 NSDVETIVNQGNKLGLPP--------QTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTY 224
+ + GL P + +D NG G +++++ +V G+T
Sbjct: 166 TK------GEFGEAGLQPFDMAKAIDEDADYVVFNGSVG---STTDENSLTAKV--GETV 214
Query: 225 LLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSR 284
L I N N F + G V ++ K Q LI G V K + P
Sbjct: 215 RLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKV-EVPGT 273
Query: 285 YFMAARPFMDAPIPVDNKTVTAILQYKG 312
+ + A NK A+L+ +G
Sbjct: 274 FILVDHSIFRAF----NKGALAMLKVEG 297
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M S
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHS 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M S
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHS 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAH----ILW-LRA 139
+ +HG A G A +T + G T F + GT +HA + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHAAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M S
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHS 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP 160
+ G ++++P++ P +P
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKP 163
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWA---DGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRATV 141
+ +HG G P K S T+ + V G + WH + + +
Sbjct: 91 VDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVY-VCAPEGMVPWH-----VVSGM 144
Query: 142 YGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLGLP 189
G ++++P++ P +P + + +GE+ D T+ G+ + +
Sbjct: 145 SGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVM 204
Query: 190 PQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTV 248
+ +H + NGK G L + A+ + G+T LL I + A D I GH V
Sbjct: 205 RTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGDWV 258
Query: 249 VE 250
E
Sbjct: 259 WE 260
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VEFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTG--GWTAIRFRADNPG 520
H FH+HG+ + +GI DP++ ++D N + P G+ I G
Sbjct: 231 HTFHMHGHRWADNRTGI--LTGPDDPSR--VID----NKITGPADSFGFQIIAGEGVGAG 282
Query: 521 VWFMHCHLELHTMWGLKMAFVVENGKSPDQSI 552
W HCH++ H+ G+ F+V K PD +I
Sbjct: 283 AWMYHCHVQSHSDMGMVGLFLV---KKPDGTI 311
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 59 PGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYD 118
PGP I + EGD + I TN S+H HGL + +DG A + + ++ G + TY
Sbjct: 75 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 131
Query: 119 FNVT------------GQRGTLWWHAHIL-------WLRATVYGAIVIMPK 150
+ G G +H H++ +R +YG +++ K
Sbjct: 132 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 182
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 20/126 (15%)
Query: 52 VTVNGMFP--GPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPI 109
+T+N P GP GDRV I + H +Y + H HG + WAD I P
Sbjct: 198 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTGPD 252
Query: 110 K---------TGNSYTYDFNVTGQRGT---LW-WHAHILWLRATVYGAIVIMPKERTSFP 156
TG + ++ F + G W +H H+ + ++ K + P
Sbjct: 253 DPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 312
Query: 157 FPQPYQ 162
+P++
Sbjct: 313 GYEPHE 318
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+++HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VNFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 30 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 89
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 90 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 141
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 142 GLSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 201
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 202 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 255
Query: 247 TVVE 250
V E
Sbjct: 256 WVWE 259
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 47 NSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQ 106
KP +G+ GPT+Y GD + ++ N A +SIH G+K + +++G +Y
Sbjct: 47 KEKPQSRTSGLL-GPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSK--FSEGASYSDH 103
Query: 107 C--------PIKTGNSYTYDFNVTGQRG 126
+ G YTY++ ++ G
Sbjct: 104 TLPMEKMDDAVAPGQEYTYEWIISEHSG 131
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GLSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GLSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 32 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 91
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 92 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 143
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 144 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 203
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 204 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 257
Query: 247 TVVE 250
V E
Sbjct: 258 WVWE 261
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTG--GWTAIRFRADNPG 520
H FH+HG+ + +GI DP++ ++D N + P G+ I G
Sbjct: 193 HTFHMHGHRWADNRTGI--LTGPDDPSR--VID----NKITGPADSFGFQIIAGEGVGAG 244
Query: 521 VWFMHCHLELHTMWGLKMAFVVENGKSPDQSI 552
W HCH++ H+ G+ F+V K PD +I
Sbjct: 245 AWMYHCHVQSHSDMGMVGLFLV---KKPDGTI 273
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 59 PGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYD 118
PGP I + EGD + I TN S+H HGL + +DG A + + ++ G + TY
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEIS--SDGTA-MNKSDVEPGGTRTYT 93
Query: 119 FNVT------------GQRGTLWWHAHIL-------WLRATVYGAIVIMPK 150
+ G G +H H++ +R +YG +++ K
Sbjct: 94 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 144
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 52 VTVNGMFP--GPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCP 108
+T+N P GP GDRV I + H +Y + H HG + WAD I P
Sbjct: 160 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTGP 213
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTG--GWTAIRFRADNPG 520
H FH+HG+ + +GI DP++ ++D N + P G+ I G
Sbjct: 194 HTFHMHGHRWADNRTGI--LTGPDDPSR--VID----NKITGPADSFGFQIIAGEGVGAG 245
Query: 521 VWFMHCHLELHTMWGLKMAFVVENGKSPDQSI 552
W HCH++ H+ G+ F+V K PD +I
Sbjct: 246 AWMYHCHVQSHSDMGMVGLFLV---KKPDGTI 274
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 59 PGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYD 118
PGP I + EGD + I TN S+H HGL + +DG A + + ++ G + TY
Sbjct: 38 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEIS--SDGTA-MNKSDVEPGGTRTYT 94
Query: 119 FNVT------------GQRGTLWWHAHIL-------WLRATVYGAIVIMPK 150
+ G G +H H++ +R +YG +++ K
Sbjct: 95 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 145
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 52 VTVNGMFP--GPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCP 108
+T+N P GP GDRV I + H +Y + H HG + WAD I P
Sbjct: 161 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTGP 214
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 37 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 96
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 97 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 148
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
+ G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 149 GMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 208
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L A+ + G+T LL I + A D I GH
Sbjct: 209 VMRTLTPSHIVFNGKVGALTGAD-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 262
Query: 247 TVVE 250
V E
Sbjct: 263 WVWE 266
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GASGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTG--GWTAIRFRADNPG 520
H FH+HG+ + +GI DP++ ++D N + P G+ I G
Sbjct: 190 HTFHMHGHRWADNRTGI--LTGPDDPSR--VID----NKITGPADSFGFQIIAGEGVGAG 241
Query: 521 VWFMHCHLELHTMWGLKMAFVVENGKSPDQSI 552
W HCH++ H+ G+ F+V K PD +I
Sbjct: 242 AWMYHCHVQSHSDMGMVGLFLV---KKPDGTI 270
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 59 PGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYD 118
PGP I + EGD + I TN S+H HGL + +DG A + + ++ G + TY
Sbjct: 34 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 90
Query: 119 FNVT------------GQRGTLWWHAHIL-------WLRATVYGAIVIMPK 150
+ G G +H H++ +R +YG +++ K
Sbjct: 91 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 141
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 52 VTVNGMFP--GPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCP 108
+T+N P GP GDRV I + H +Y + H HG + WAD I P
Sbjct: 157 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTGP 210
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 463 HPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTG--GWTAIRFRADNPG 520
H FHLHG+ + +G+ DP++ ++D N + P G+ I G
Sbjct: 196 HTFHLHGHRWADNRTGM--LTGPDDPSQ--VID----NKICGPADSFGFQVIAGEGVGAG 247
Query: 521 VWFMHCHLELHTMWGLKMAFVVENGKSPDQSI 552
W HCH++ H+ G+ F+V K PD +I
Sbjct: 248 AWMYHCHVQSHSDMGMVGLFLV---KKPDGTI 276
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 24/145 (16%)
Query: 25 PADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMS 84
PA VK+ + + ++ + PGP I + EGD + I N +S
Sbjct: 8 PAGGEVKRIKLYAERLGGGQMGYG--LEKGKATIPGPLIELNEGDTLHIEFENTMDVPVS 65
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGN--SYTYDFNVTGQRGTLWW----------HA 132
+H HGL + +DG ++ ++ G +YT+ +V G+R W H
Sbjct: 66 LHVHGLDYEIS--SDGTKQ-SRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHD 122
Query: 133 HIL-------WLRATVYGAIVIMPK 150
H++ +R +YG +++ K
Sbjct: 123 HVVGTEHGTGGIRNGLYGPVIVRRK 147
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 44/247 (17%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHA--------HILW 136
+ +HG A G A +T + G T F + GT +H H++
Sbjct: 91 VDFHGAT-----GALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPHHVV- 141
Query: 137 LRATVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GN 184
+ + G ++++P++ P +P + + +GE+ D T+ G+
Sbjct: 142 --SGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGD 199
Query: 185 KLGLPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAG 243
+ + + +H + NGK G L + A+ + G+T LL I + A D I G
Sbjct: 200 TVQVMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGG 253
Query: 244 HNMTVVE 250
H V E
Sbjct: 254 HGDWVWE 260
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP 160
+ G ++++P++ P +P
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKP 163
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP 160
+ G ++++P++ P +P
Sbjct: 143 GMSGTLMVLPRDGLKDPQGKP 163
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GQSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 38/244 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 31 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 90
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH----AHILW-LRA 139
+ +HG A G A +T + G T F + GT +H + W + +
Sbjct: 91 VDFHGATG-----ALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVS 142
Query: 140 TVYGAIVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLG 187
G ++++P++ P +P + + +GE+ D T+ G+ +
Sbjct: 143 GQSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQ 202
Query: 188 LPPQTSDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246
+ + +H + NGK G L + A+ + G+T LL I + A D I GH
Sbjct: 203 VMRTLTPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGD 256
Query: 247 TVVE 250
V E
Sbjct: 257 WVWE 260
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 34/219 (15%)
Query: 52 VTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--SIHWHGLKQYRNGWADGPAYITQCPI 109
+T NG PGPT+ + EGD V + + N A M ++ +HG A G A +T +
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATG-----ALGGAKLTN--V 108
Query: 110 KTGNSYTYDFNVTGQRGTLWWH----AHILW-LRATVYGAIVIMPKERTSFPFPQP-YQE 163
G T F + GT +H + W + + + G ++++P++ P P + +
Sbjct: 109 NPGEQATLRFKAD-RSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKDPAGAPLHYD 167
Query: 164 TNIILGEW----------WNSDVETIVNQ-GNKLGLPPQTSDAHTI-NGKSGPLFPCSEK 211
+GE+ D T+ G+ + + + +H + NGK G L +
Sbjct: 168 RAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN-- 225
Query: 212 HTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVE 250
A+ G+T LL I + A D I GH V E
Sbjct: 226 ---ALTASVGETVLL-IHSQANRDTRPHLIGGHGDWVWE 260
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 36/239 (15%)
Query: 31 KKYQFDVQVKNVSRLCNSK----PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNM--S 84
K +F + ++ + + K +T NG PGPT+ + EGD V + + N A M +
Sbjct: 32 KVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHN 91
Query: 85 IHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGA 144
+ +HG A G A +T + G T F + GT +H + G
Sbjct: 92 VDFHGAT-----GALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHC---TPHPFMSGT 140
Query: 145 IVIMPKERTSFPFPQP-YQETNIILGEW----------WNSDVETIVNQ-GNKLGLPPQT 192
++++P++ P +P + + +GE+ D T+ G+ + +
Sbjct: 141 LMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTL 200
Query: 193 SDAHTI-NGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVE 250
+ +H + NGK G L + A+ + G+T LL I + A D I GH V E
Sbjct: 201 TPSHIVFNGKVGALTGAN-----ALTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWE 253
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 39/278 (14%)
Query: 23 SFPADAAVKKYQFDVQVKNVSRLCN-SKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQY 81
SFP + +V Y+ + V+ L N +KP G+ GPTI D V+I + N A +
Sbjct: 37 SFPFNTSVV-YKKTLFVEFTDHLFNIAKPRPPWMGLL-GPTIQAEVYDTVVITLKNMASH 94
Query: 82 NMSIHWHGLKQYRNGWADGPAYITQCPIKT--------GNSYTYDFNVTGQRG------- 126
+S+H G+ ++ ++G Y Q + G S+TY + V + G
Sbjct: 95 PVSLHAVGVSYWKA--SEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASDPL 152
Query: 127 --TLWWHAHILW---LRATVYGAIVIMPKERTSFPFPQPYQETNIIL-----GEWWNSDV 176
T + +H+ L + + GA+++ + + Q + ++ G+ W+S+
Sbjct: 153 CLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLFAVFDEGKSWHSET 212
Query: 177 ETIVNQGNKLGLPPQTSDAHTING---KSGP-LFPCSEKHTFAMEVESGKTYLLRIVNAA 232
+ + Q HT+NG +S P L C K + + G T V++
Sbjct: 213 KNSLMQDRDAASARAWPKMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTT---PEVHSI 269
Query: 233 LNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQ 270
+ F + H +EI + T Q +L+ GQ
Sbjct: 270 FLEGHTFLVRNHRQASLEISPITF--LTAQTLLMDLGQ 305
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 60 GPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWA----DGPAYITQCPIKTGNSY 115
GP +Y GD +LI N A +I+ HG+ R ++ G ++ PI G +
Sbjct: 450 GPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIF 509
Query: 116 TYDFNVTGQRG 126
Y + VT + G
Sbjct: 510 KYKWTVTVEDG 520
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 39/278 (14%)
Query: 23 SFPADAAVKKYQFDVQVKNVSRLCN-SKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQY 81
SFP + +V Y+ + V+ L N +KP G+ GPTI D V+I + N A +
Sbjct: 38 SFPFNTSVV-YKKTLFVEFTDHLFNIAKPRPPWMGLL-GPTIQAEVYDTVVITLKNMASH 95
Query: 82 NMSIHWHGLKQYRNGWADGPAYITQCPIKT--------GNSYTYDFNVTGQRG------- 126
+S+H G+ ++ ++G Y Q + G S+TY + V + G
Sbjct: 96 PVSLHAVGVSYWKA--SEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASDPL 153
Query: 127 --TLWWHAHILW---LRATVYGAIVIMPKERTSFPFPQPYQETNIIL-----GEWWNSDV 176
T + +H+ L + + GA+++ + + Q + ++ G+ W+S+
Sbjct: 154 CLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLFAVFDEGKSWHSET 213
Query: 177 ETIVNQGNKLGLPPQTSDAHTING---KSGP-LFPCSEKHTFAMEVESGKTYLLRIVNAA 232
+ + Q HT+NG +S P L C K + + G T V++
Sbjct: 214 KNSLMQDRDAASARAWPKMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTT---PEVHSI 270
Query: 233 LNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQ 270
+ F + H +EI + T Q +L+ GQ
Sbjct: 271 FLEGHTFLVRNHRQASLEISPITF--LTAQTLLMDLGQ 306
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 60 GPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWA----DGPAYITQCPIKTGNSY 115
GP +Y GD +LI N A +I+ HG+ R ++ G ++ PI G +
Sbjct: 451 GPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIF 510
Query: 116 TYDFNVTGQRG 126
Y + VT + G
Sbjct: 511 KYKWTVTVEDG 521
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 460 VESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNP 519
++ H H HG++F G+ + D + G + + P
Sbjct: 972 IDLHTVHFHGHSFQYKHRGVYSSD-----------------VFDIFPGTYQTLEMFPRTP 1014
Query: 520 GVWFMHCHLELHTMWGLKMAFVV 542
G+W +HCH+ H G++ + V
Sbjct: 1015 GIWLLHCHVTDHIHAGMETTYTV 1037
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 58 FPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRN 95
F GP I GD+V +++ N A + H HG+ Y+
Sbjct: 73 FLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKE 110
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 460 VESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNP 519
++ H H HG++F G+ + D + G + + P
Sbjct: 991 IDLHTVHFHGHSFQYKHRGVYSSD-----------------VFDIFPGTYQTLEMFPRTP 1033
Query: 520 GVWFMHCHLELHTMWGLKMAFVV 542
G+W +HCH+ H G++ + V
Sbjct: 1034 GIWLLHCHVTDHIHAGMETTYTV 1056
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 58 FPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRN 95
F GP I GD+V +++ N A + H HG+ Y+
Sbjct: 92 FLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKE 129
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG+FPGPTI ++ + V + N+ + + + + P T + G +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 115 -----------YTYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
++ DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG+FPGPTI ++ + V + N+ + + + + P T + G +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 115 -----------YTYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
++ DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG+FPGPTI ++ + V + N+ + + + + P T + G +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 115 -----------YTYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
++ DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 26 ADAAVKKYQFDVQVKNVSRLCN----SKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQY 81
A A K QF + ++ + + + +T NG PGPT+ + EGD + + + N A
Sbjct: 22 AAGAPKVVQFRMSIEEKKMVADDDGTTAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATN 81
Query: 82 NM 83
+M
Sbjct: 82 SM 83
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTG-- 112
NG+FPGPTI ++ + V + N+ + + + + P T + G
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 113 ----NSY-----TYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
N Y + DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSNGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG+FPGPTI ++ + V + N+ + + + + P T + G +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 115 -----------YTYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
++ DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG+FPGPTI ++ + V + N+ + + + + P T + G +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 115 -----------YTYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
++ DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSEGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG+FPGPTI ++ + V + N+ + + + + P T + G +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 115 -----------YTYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
++ DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNS 114
NG+FPGPTI ++ + V + N+ + + + + P T + G +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 115 -----------YTYDFNVTG-------------QRGT-LWWHAHILWL-RATVY----GA 144
++ DF TG QRG LW+H H + L R VY GA
Sbjct: 112 PDDSAGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGA 171
Query: 145 IVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKS 202
+I + P + +++ + +N+ L P P+ N
Sbjct: 172 YIIHDPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSI 224
Query: 203 GPLFPCSE------KHTFAMEVESGKTYLLRIVNAA 232
P F C E K +EVE K Y R++NA+
Sbjct: 225 VPAF-CGETILVNGKVWPYLEVEPRK-YRFRVINAS 258
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 77/212 (36%), Gaps = 43/212 (20%)
Query: 55 NGMFPGPTIYIREGDRVLINVTN------------------HAQYNMSIHWHGLKQYRNG 96
NG+FPGPTI ++ + V + N + +H HG +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSEEPEVKTVVHLHGGVTPDDS 111
Query: 97 WADGPAYITQCPIKTG---NSYTYDFNVTGQRGTLWWHAHILWL-RATVY----GAIVIM 148
A+ ++ +TG Y + + LW+H H + L R VY GA +I
Sbjct: 112 DGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIH 171
Query: 149 PKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLP--PQTSDAHTINGKSGPLF 206
+ P + +++ + +N+ L P P+ N P F
Sbjct: 172 DPKEKRLKLPSDEYDVPLLI-------TDRTINEDGSLFYPSAPENPSPSLPNPSIVPAF 224
Query: 207 PCSE------KHTFAMEVESGKTYLLRIVNAA 232
C E K +EVE K Y R++NA+
Sbjct: 225 -CGETILVNGKVWPYLEVEPRK-YRFRVINAS 254
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 35/236 (14%)
Query: 54 VNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGN 113
+NG + GPTI + +GD V + +N N+S+ GL Q GPA + +
Sbjct: 43 INGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGL-QVPGPLMGGPARM----MSPNA 97
Query: 114 SYTYDFNVTGQRGTLWWHAHILWLRA-TVY----GAIVIMPKERTSFPFPQPYQETN--I 166
+ + TLW+HA+ A VY G ++ + S P P Y + +
Sbjct: 98 DWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPV 157
Query: 167 ILGEWWNSDVETIVNQG----NKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGK 222
I+ + + + N G N+ G D +NG P +EV G
Sbjct: 158 IIQD------KRLDNFGTPEYNEPGSGGFVGDTLLVNGVQSPY----------VEVSRGW 201
Query: 223 TYLLRIVNAALNDELFFAI-AGHNMTVVEIDAVYT-KPFTTQAILIAPGQTTNVLV 276
LR++NA+ + + G + V+ D + P + + + +APG+ +LV
Sbjct: 202 VR-LRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILV 256
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 108/298 (36%), Gaps = 50/298 (16%)
Query: 53 TVNGMFPGPTIYIREGDRVLINVTNHAQ----YNMSIHWHGLKQYRNGWADGPAYITQCP 108
T +G PG I +REGD V + +N+ +N+ H +
Sbjct: 62 TFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQG---------GGAAATF 112
Query: 109 IKTGNSYTYDFNVTGQRGTLWWHAHI----LWLRATVYGAIVIMPKERTSFPFPQPYQET 164
G + T+ F Q G +H + + + +YG I++ PKE P+ +E
Sbjct: 113 TAPGRTSTFSFKAL-QPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEF 167
Query: 165 NIILGEWWNSDVETIVNQGNKLGLPPQTSDAH--------TINGKSGPLFPCSEKHTFAM 216
I+ G+++ + GL P D NG G L + A+
Sbjct: 168 YIVQGDFYTK------GKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDN-----AL 216
Query: 217 EVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLV 276
+ ++G+T + + N N F + G V ++ Q+ ++ G + V
Sbjct: 217 KAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEF 276
Query: 277 KADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFAL 334
K D P Y + A NK L+ +G N + T SDT +A+
Sbjct: 277 KVD-IPGNYTLVDHSIFRA----FNKGALGQLKVEGAENPEIMTQKL----SDTAYAV 325
>pdb|2IAH|A Chain A, Crystal Structure Of The Ferripyoverdine Receptor Of The
Outer Membrane Of Pseudomonas Aeruginosa Bound To
Ferripyoverdine.
pdb|2O5P|A Chain A, Crystal Structure Of The Full Length Ferric Pyoverdine
Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
In Its Apo Form
pdb|2O5P|B Chain B, Crystal Structure Of The Full Length Ferric Pyoverdine
Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
In Its Apo Form
pdb|2W16|A Chain A, Structures Of Fpva Bound To Heterologous Pyoverdines
pdb|2W16|B Chain B, Structures Of Fpva Bound To Heterologous Pyoverdines
pdb|2W6T|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
pdb|2W6T|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
pdb|2W6U|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(G173)-Fe Complex
pdb|2W6U|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(G173)-Fe Complex
pdb|2W75|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Apo-Fpva
pdb|2W75|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Apo-Fpva
pdb|2W76|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
pdb|2W76|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
pdb|2W77|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
pdb|2W77|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
pdb|2W78|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
pdb|2W78|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
Length = 772
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 420 FNYTGAPLTA-NLGTSLGTRLSKVAFNSTIELVLQDTNLLT 459
F Y G P TA N+G S G LS +A +E++ T LLT
Sbjct: 174 FQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLT 214
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 53 TVNGMFPGPTIYIREGDRVLINVTNHAQYNM--SIHWH 88
T NG PGP + +R GD V +++ NH M S+ +H
Sbjct: 187 TFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFH 224
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 55/164 (33%)
Query: 55 NGMFPGPTIYIREGDRVLINVTNH----AQYNMS-------------------------- 84
+G PGPTI +R G RV I TN ++Y ++
Sbjct: 59 DGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPN 118
Query: 85 -----------IHWHGLKQ--YRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH 131
H HG + +GWAD + G++ ++ Q W+H
Sbjct: 119 KDVAALPAWSVTHLHGAQTGGGNDGWADN-------AVGFGDAQLSEYPNDHQATQWWYH 171
Query: 132 AHIL----W-LRATVYGAIVIMPKERTSFPFPQPYQETNIILGE 170
H + W + A +YG ++ E + P +E +++ +
Sbjct: 172 DHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIPLLIAD 215
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 206 FPCSEKHTFAMEVESGKTYL--LRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQA 263
+P S++ +FA ++ SG YL + I++ LN HN V E V F
Sbjct: 105 YPWSQRVSFAKDIASGMAYLHSMNIIHRDLN--------SHNCLVRENKNVVVADFGLAR 156
Query: 264 ILIAPGQTTNVL--VKADQSPSRYFMAARPFMDAPIPVDNKT 303
+++ L +K RY + P+ AP ++ ++
Sbjct: 157 LMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRS 198
>pdb|2GPR|A Chain A, Glucose Permease Iia From Mycoplasma Capricolum
Length = 154
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 183 GNKLGLPPQTSDAHT-INGKSGPLFPCSEKHTFAMEVESGKTYLLRI 228
G+ + P+++D H ++GK FP KH F ++ +SG LL I
Sbjct: 35 GDGFAINPKSNDFHAPVSGKLVTAFPT--KHAFGIQTKSGVEILLHI 79
>pdb|1XKH|A Chain A, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
Aeruginosa Pao1 Bound To Pyoverdine
pdb|1XKH|B Chain B, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
Aeruginosa Pao1 Bound To Pyoverdine
pdb|1XKH|C Chain C, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
Aeruginosa Pao1 Bound To Pyoverdine
Length = 687
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 420 FNYTGAPLTA-NLGTSLGTRLSKVAFNSTIELVLQDTNLLT 459
F Y G P TA N+G S G LS A +E++ T LLT
Sbjct: 89 FQYDGIPSTARNVGYSAGNTLSDXAIYDRVEVLKGATGLLT 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,216,129
Number of Sequences: 62578
Number of extensions: 821543
Number of successful extensions: 2037
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1713
Number of HSP's gapped (non-prelim): 246
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)