Query 036540
Match_columns 562
No_of_seqs 232 out of 1666
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 2E-107 4E-112 874.4 62.8 535 28-562 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 8E-105 2E-109 844.4 60.2 535 9-562 6-554 (596)
3 PLN02792 oxidoreductase 100.0 8E-103 2E-107 827.0 57.7 502 25-562 11-523 (536)
4 PLN02354 copper ion binding / 100.0 2E-102 4E-107 827.8 58.9 509 24-562 21-538 (552)
5 PLN02835 oxidoreductase 100.0 3E-102 7E-107 825.3 59.9 515 8-562 8-531 (539)
6 PLN02991 oxidoreductase 100.0 3E-102 7E-107 820.9 58.8 497 26-562 24-530 (543)
7 PLN02168 copper ion binding / 100.0 1E-100 3E-105 809.8 57.4 499 27-562 23-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 1.2E-99 3E-104 795.8 57.8 528 21-562 19-555 (563)
9 PLN02604 oxidoreductase 100.0 2.4E-95 5E-100 781.7 61.0 522 17-562 11-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 1.7E-95 4E-100 780.5 58.1 512 26-562 19-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 4.8E-95 1E-99 777.5 57.8 508 30-562 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1E-91 2.2E-96 749.3 54.6 489 31-544 9-533 (538)
13 TIGR01480 copper_res_A copper- 100.0 4.5E-79 9.7E-84 650.3 52.8 452 1-543 3-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.3E-75 2.8E-80 619.8 48.7 423 30-543 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.7E-74 5.9E-79 604.9 46.9 402 32-544 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 2.4E-60 5.2E-65 502.5 44.0 438 6-544 1-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 3.3E-47 7.2E-52 379.5 25.8 265 26-314 23-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 3E-35 6.4E-40 250.3 12.0 116 36-151 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 1.3E-29 2.8E-34 225.2 11.3 107 434-544 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 1.1E-26 2.3E-31 210.7 13.8 149 162-312 1-158 (159)
21 TIGR01480 copper_res_A copper- 99.7 9.3E-17 2E-21 172.5 20.4 226 52-291 249-572 (587)
22 TIGR03095 rusti_cyanin rusticy 99.7 5.1E-17 1.1E-21 143.5 13.4 102 45-148 37-148 (148)
23 TIGR02376 Cu_nitrite_red nitri 99.7 2.3E-15 5E-20 150.7 25.4 236 194-546 48-299 (311)
24 PRK10965 multicopper oxidase; 99.6 1.5E-13 3.2E-18 146.8 23.1 233 48-292 211-509 (523)
25 PLN02835 oxidoreductase 99.5 4.5E-13 9.8E-18 143.5 20.7 239 49-291 191-497 (539)
26 TIGR03389 laccase laccase, pla 99.5 1.3E-12 2.7E-17 141.3 23.2 240 50-291 167-505 (539)
27 PRK10883 FtsI repressor; Provi 99.5 8.8E-13 1.9E-17 139.5 20.7 221 47-293 207-455 (471)
28 TIGR03096 nitroso_cyanin nitro 99.4 1.1E-12 2.3E-17 111.7 11.7 105 18-138 12-124 (135)
29 COG2132 SufI Putative multicop 99.4 1E-11 2.2E-16 132.0 17.8 233 46-292 186-435 (451)
30 PLN02168 copper ion binding / 99.4 8.2E-11 1.8E-15 125.9 22.2 240 49-291 188-501 (545)
31 PLN02354 copper ion binding / 99.4 4.3E-11 9.4E-16 128.6 20.0 240 49-291 189-504 (552)
32 PLN02991 oxidoreductase 99.3 9.9E-11 2.1E-15 125.1 20.9 241 48-291 189-496 (543)
33 TIGR03388 ascorbase L-ascorbat 99.3 7.5E-11 1.6E-15 127.5 19.7 228 62-291 204-509 (541)
34 TIGR03390 ascorbOXfungal L-asc 99.3 1.4E-10 3E-15 125.1 20.7 240 50-291 172-517 (538)
35 PLN02604 oxidoreductase 99.3 1.1E-10 2.3E-15 126.7 19.3 227 61-291 224-532 (566)
36 PLN02792 oxidoreductase 99.3 3.6E-10 7.9E-15 120.9 22.0 241 48-291 178-489 (536)
37 PLN02191 L-ascorbate oxidase 99.2 1.6E-09 3.6E-14 117.3 20.8 228 61-291 226-532 (574)
38 PF07731 Cu-oxidase_2: Multico 99.1 5.4E-10 1.2E-14 98.9 11.3 79 212-292 32-121 (138)
39 PLN00044 multi-copper oxidase- 99.0 1.5E-08 3.3E-13 109.2 20.3 227 61-290 217-518 (596)
40 KOG1263 Multicopper oxidases [ 98.7 8.4E-07 1.8E-11 94.9 20.3 241 49-291 192-521 (563)
41 PF07732 Cu-oxidase_3: Multico 98.7 6.2E-08 1.3E-12 82.6 9.0 91 437-545 25-116 (117)
42 PRK02710 plastocyanin; Provisi 98.6 8.8E-07 1.9E-11 75.8 14.0 73 61-148 47-119 (119)
43 PF13473 Cupredoxin_1: Cupredo 98.4 7.5E-07 1.6E-11 74.5 6.2 70 61-147 35-104 (104)
44 TIGR02656 cyanin_plasto plasto 98.3 5E-06 1.1E-10 68.7 9.3 81 61-148 17-99 (99)
45 TIGR03095 rusti_cyanin rusticy 98.1 1.9E-05 4.1E-10 70.0 10.2 92 438-543 52-148 (148)
46 TIGR02657 amicyanin amicyanin. 98.1 2E-05 4.4E-10 62.8 8.9 73 61-148 11-83 (83)
47 PF00127 Copper-bind: Copper b 98.0 2.7E-05 5.8E-10 64.4 7.5 82 61-148 17-99 (99)
48 PF00394 Cu-oxidase: Multicopp 97.9 3.4E-05 7.5E-10 69.8 8.0 93 437-543 59-156 (159)
49 TIGR03094 sulfo_cyanin sulfocy 97.9 0.00027 5.7E-09 62.8 12.9 102 50-152 73-189 (195)
50 PF06525 SoxE: Sulfocyanin (So 97.9 0.00026 5.6E-09 64.4 13.0 103 50-153 74-191 (196)
51 PRK02888 nitrous-oxide reducta 97.8 9.5E-05 2.1E-09 79.1 10.0 99 41-150 533-635 (635)
52 COG3794 PetE Plastocyanin [Ene 97.7 0.00043 9.4E-09 59.0 10.5 75 61-149 54-128 (128)
53 TIGR02656 cyanin_plasto plasto 97.6 0.00029 6.2E-09 58.2 7.9 83 438-543 17-99 (99)
54 TIGR03096 nitroso_cyanin nitro 97.5 0.00047 1E-08 59.3 7.9 69 197-292 53-121 (135)
55 TIGR02375 pseudoazurin pseudoa 97.4 0.0013 2.8E-08 55.6 8.9 75 61-151 15-90 (116)
56 TIGR03102 halo_cynanin halocya 97.1 0.0038 8.1E-08 52.7 9.3 73 61-148 42-115 (115)
57 PF00127 Copper-bind: Copper b 96.8 0.0054 1.2E-07 50.6 7.5 83 438-543 17-99 (99)
58 PF13473 Cupredoxin_1: Cupredo 96.8 0.0082 1.8E-07 50.0 8.5 59 214-290 35-93 (104)
59 PRK02888 nitrous-oxide reducta 96.5 0.012 2.6E-07 63.3 9.2 78 439-544 556-634 (635)
60 PRK02710 plastocyanin; Provisi 96.0 0.033 7.3E-07 47.5 7.8 72 439-543 48-119 (119)
61 PF06525 SoxE: Sulfocyanin (So 95.8 0.084 1.8E-06 48.3 10.0 87 194-290 74-170 (196)
62 COG4454 Uncharacterized copper 95.8 0.12 2.6E-06 45.2 10.2 87 58-149 60-158 (158)
63 PRK10378 inactive ferrous ion 95.0 0.35 7.7E-06 49.4 12.3 75 61-151 44-119 (375)
64 TIGR02375 pseudoazurin pseudoa 94.9 0.15 3.3E-06 43.1 7.9 33 512-546 58-90 (116)
65 PF00116 COX2: Cytochrome C ox 94.8 0.36 7.9E-06 41.2 10.2 62 214-294 46-107 (120)
66 TIGR02657 amicyanin amicyanin. 94.5 0.3 6.5E-06 38.6 8.4 73 438-543 11-83 (83)
67 TIGR02695 azurin azurin. Azuri 94.2 0.29 6.2E-06 41.5 7.9 86 61-146 16-124 (125)
68 COG4454 Uncharacterized copper 93.1 0.16 3.5E-06 44.5 4.8 93 440-543 65-157 (158)
69 TIGR03102 halo_cynanin halocya 92.6 0.87 1.9E-05 38.5 8.4 74 438-543 42-115 (115)
70 TIGR02866 CoxB cytochrome c ox 91.6 1.6 3.4E-05 41.1 10.0 76 61-151 117-194 (201)
71 PF12690 BsuPI: Intracellular 90.6 3.4 7.3E-05 32.6 9.4 66 223-289 3-82 (82)
72 PF00116 COX2: Cytochrome C ox 90.1 4.5 9.7E-05 34.5 10.5 74 437-542 45-119 (120)
73 TIGR03094 sulfo_cyanin sulfocy 89.9 3 6.6E-05 37.6 9.4 98 436-545 83-187 (195)
74 TIGR02866 CoxB cytochrome c ox 89.2 1.8 3.9E-05 40.7 8.1 76 438-545 117-193 (201)
75 PF12690 BsuPI: Intracellular 85.7 1.9 4.2E-05 34.0 5.1 58 62-130 17-80 (82)
76 PF10518 TAT_signal: TAT (twin 84.7 1.2 2.6E-05 26.7 2.6 20 4-23 2-21 (26)
77 COG1622 CyoA Heme/copper-type 84.5 4.4 9.6E-05 39.2 8.0 63 214-295 137-199 (247)
78 COG3794 PetE Plastocyanin [Ene 84.1 5.4 0.00012 34.3 7.4 74 439-544 55-128 (128)
79 TIGR02695 azurin azurin. Azuri 83.4 8.1 0.00018 32.9 8.1 77 214-290 16-111 (125)
80 COG1470 Predicted membrane pro 80.3 82 0.0018 33.2 17.7 176 63-294 278-470 (513)
81 COG4263 NosZ Nitrous oxide red 79.6 3 6.6E-05 42.9 5.0 77 61-148 558-636 (637)
82 TIGR01433 CyoA cytochrome o ub 77.4 6.5 0.00014 37.6 6.4 62 214-294 139-200 (226)
83 COG1622 CyoA Heme/copper-type 77.1 9.9 0.00022 36.8 7.6 77 438-546 137-214 (247)
84 MTH00047 COX2 cytochrome c oxi 75.7 11 0.00023 35.1 7.2 61 215-294 117-177 (194)
85 PRK10378 inactive ferrous ion 71.1 30 0.00066 35.6 9.7 62 214-291 44-105 (375)
86 TIGR01432 QOXA cytochrome aa3 71.0 11 0.00023 36.0 6.1 61 214-293 130-190 (217)
87 MTH00140 COX2 cytochrome c oxi 67.0 19 0.00041 34.5 7.0 61 214-293 140-200 (228)
88 PF10633 NPCBM_assoc: NPCBM-as 66.8 12 0.00025 29.0 4.6 60 66-129 2-70 (78)
89 PTZ00047 cytochrome c oxidase 66.4 26 0.00056 31.4 7.1 61 215-294 74-134 (162)
90 PF05506 DUF756: Domain of unk 66.0 41 0.0009 26.7 7.8 63 60-131 8-73 (89)
91 PRK10525 cytochrome o ubiquino 63.9 15 0.00032 36.9 5.7 61 215-294 152-212 (315)
92 MTH00140 COX2 cytochrome c oxi 60.2 37 0.00079 32.6 7.6 76 437-544 139-215 (228)
93 MTH00047 COX2 cytochrome c oxi 60.2 84 0.0018 29.3 9.6 76 438-545 116-192 (194)
94 MTH00008 COX2 cytochrome c oxi 58.9 33 0.00072 32.8 7.0 61 214-293 140-200 (228)
95 PF07705 CARDB: CARDB; InterP 58.8 90 0.002 24.8 9.7 66 217-291 14-83 (101)
96 MTH00098 COX2 cytochrome c oxi 55.9 37 0.00081 32.5 6.8 61 214-293 140-200 (227)
97 PF04151 PPC: Bacterial pre-pe 55.6 56 0.0012 24.5 6.5 65 214-290 5-69 (70)
98 PF01835 A2M_N: MG2 domain; I 55.4 40 0.00087 27.2 6.1 69 217-291 10-85 (99)
99 MTH00129 COX2 cytochrome c oxi 54.9 34 0.00074 32.8 6.3 61 214-293 140-200 (230)
100 MTH00154 COX2 cytochrome c oxi 53.4 54 0.0012 31.4 7.4 61 214-293 140-200 (227)
101 TIGR03079 CH4_NH3mon_ox_B meth 52.9 65 0.0014 32.7 7.9 16 106-121 337-352 (399)
102 TIGR01409 TAT_signal_seq Tat ( 51.4 16 0.00034 22.4 2.2 20 4-23 1-20 (29)
103 MTH00051 COX2 cytochrome c oxi 50.1 72 0.0016 30.7 7.7 61 214-293 144-204 (234)
104 MTH00185 COX2 cytochrome c oxi 49.5 59 0.0013 31.2 7.0 61 214-293 140-200 (230)
105 PF05938 Self-incomp_S1: Plant 49.0 58 0.0013 27.0 6.2 68 72-149 2-70 (110)
106 PTZ00047 cytochrome c oxidase 48.6 1.4E+02 0.0031 26.8 8.6 75 438-544 73-148 (162)
107 MTH00023 COX2 cytochrome c oxi 47.6 71 0.0015 30.9 7.3 62 214-294 151-212 (240)
108 MTH00117 COX2 cytochrome c oxi 45.1 90 0.002 29.9 7.5 61 214-293 140-200 (227)
109 PF04744 Monooxygenase_B: Mono 44.6 92 0.002 31.8 7.6 15 107-121 319-333 (381)
110 PF05506 DUF756: Domain of unk 43.8 1.6E+02 0.0035 23.2 9.8 58 222-290 20-77 (89)
111 MTH00168 COX2 cytochrome c oxi 43.5 70 0.0015 30.6 6.5 61 214-293 140-200 (225)
112 PRK13202 ureB urease subunit b 42.5 76 0.0016 26.0 5.4 59 62-120 12-83 (104)
113 MTH00038 COX2 cytochrome c oxi 42.4 95 0.0021 29.7 7.3 62 214-294 140-201 (229)
114 MTH00076 COX2 cytochrome c oxi 42.1 85 0.0018 30.1 6.8 61 214-293 140-200 (228)
115 TIGR01433 CyoA cytochrome o ub 41.9 91 0.002 29.8 7.0 75 439-545 140-215 (226)
116 TIGR02811 formate_TAT formate 40.5 23 0.00051 26.5 2.2 15 3-17 8-22 (66)
117 MTH00080 COX2 cytochrome c oxi 39.9 1E+02 0.0022 29.5 7.0 61 214-293 143-203 (231)
118 COG1188 Ribosome-associated he 39.0 23 0.0005 28.8 2.1 31 51-81 35-65 (100)
119 PRK05461 apaG CO2+/MG2+ efflux 37.8 48 0.001 28.5 4.0 13 106-118 73-85 (127)
120 PRK13159 cytochrome c-type bio 37.2 59 0.0013 29.0 4.5 64 26-91 29-93 (155)
121 MTH00139 COX2 cytochrome c oxi 36.9 89 0.0019 29.9 6.1 61 214-293 140-200 (226)
122 COG4633 Plastocyanin domain co 36.8 2E+02 0.0043 27.2 7.9 90 43-153 79-173 (272)
123 MTH00008 COX2 cytochrome c oxi 35.4 1.7E+02 0.0038 28.0 7.8 76 437-544 139-215 (228)
124 COG2967 ApaG Uncharacterized p 35.3 69 0.0015 26.9 4.3 53 72-127 33-95 (126)
125 MTH00023 COX2 cytochrome c oxi 35.1 1.7E+02 0.0038 28.2 7.8 76 437-544 150-226 (240)
126 PF14326 DUF4384: Domain of un 34.7 2.2E+02 0.0048 22.1 8.1 24 218-241 3-26 (83)
127 PRK13202 ureB urease subunit b 33.7 1.4E+02 0.0031 24.4 5.7 65 215-280 12-86 (104)
128 PF10633 NPCBM_assoc: NPCBM-as 33.2 2.2E+02 0.0048 21.7 7.5 64 219-290 2-74 (78)
129 TIGR00192 urease_beta urease, 32.7 1.4E+02 0.003 24.4 5.5 59 62-120 12-82 (101)
130 PF07691 PA14: PA14 domain; I 32.5 3E+02 0.0065 23.5 8.5 61 216-281 54-121 (145)
131 PRK13203 ureB urease subunit b 31.7 1.5E+02 0.0032 24.3 5.5 59 62-120 12-82 (102)
132 cd00918 Der-p2_like Several gr 31.3 2.3E+02 0.005 24.0 7.1 68 52-121 12-87 (120)
133 PF11614 FixG_C: IG-like fold 30.8 1.5E+02 0.0032 24.8 5.9 49 223-280 34-84 (118)
134 PRK13254 cytochrome c-type bio 30.4 86 0.0019 27.8 4.4 72 25-101 28-100 (148)
135 COG3540 PhoD Phosphodiesterase 30.1 94 0.002 32.9 5.2 14 108-121 107-120 (522)
136 TIGR01432 QOXA cytochrome aa3 29.9 1.8E+02 0.0039 27.5 6.9 74 440-545 132-206 (217)
137 PF10989 DUF2808: Protein of u 28.9 74 0.0016 28.1 3.8 28 107-134 97-127 (146)
138 PF04379 DUF525: Protein of un 28.8 75 0.0016 25.5 3.5 49 223-274 15-67 (90)
139 PF10399 UCR_Fe-S_N: Ubiquitin 28.7 58 0.0013 21.9 2.3 12 4-15 9-20 (41)
140 cd00407 Urease_beta Urease bet 28.4 1.9E+02 0.0042 23.6 5.6 59 62-120 12-82 (101)
141 PRK05461 apaG CO2+/MG2+ efflux 28.2 1.3E+02 0.0029 25.8 5.1 49 223-274 32-84 (127)
142 PF10636 hemP: Hemin uptake pr 27.6 1.1E+02 0.0024 20.2 3.4 19 214-232 14-32 (38)
143 MTH00027 COX2 cytochrome c oxi 27.4 1.6E+02 0.0035 28.8 6.2 61 214-293 174-234 (262)
144 PF12992 DUF3876: Domain of un 25.9 3E+02 0.0064 22.4 6.4 31 191-232 15-45 (95)
145 MTH00129 COX2 cytochrome c oxi 25.7 2.6E+02 0.0055 26.8 7.2 76 437-544 139-215 (230)
146 smart00758 PA14 domain in bact 25.7 4.1E+02 0.0089 22.5 8.2 61 216-281 52-113 (136)
147 TIGR00192 urease_beta urease, 25.1 2.5E+02 0.0055 22.9 5.7 64 216-280 13-85 (101)
148 MTH00098 COX2 cytochrome c oxi 25.1 3.2E+02 0.0069 26.1 7.6 76 437-544 139-215 (227)
149 MTH00139 COX2 cytochrome c oxi 24.9 2.8E+02 0.0061 26.4 7.3 76 437-544 139-215 (226)
150 PF14874 PapD-like: Flagellar- 24.5 3.7E+02 0.008 21.5 9.5 59 217-287 15-82 (102)
151 PF14451 Ub-Mut7C: Mut7-C ubiq 24.5 61 0.0013 25.4 2.2 27 48-74 48-74 (81)
152 PRK13198 ureB urease subunit b 24.1 2.1E+02 0.0045 25.3 5.4 59 62-120 40-110 (158)
153 PRK13205 ureB urease subunit b 24.0 2.2E+02 0.0047 25.2 5.5 57 63-119 13-81 (162)
154 PRK13204 ureB urease subunit b 23.7 2.1E+02 0.0046 25.2 5.4 57 63-119 36-104 (159)
155 PF03423 CBM_25: Carbohydrate 23.6 79 0.0017 25.1 2.7 27 495-522 47-74 (87)
156 PRK13201 ureB urease subunit b 23.4 2.4E+02 0.0052 24.3 5.6 57 63-119 13-81 (136)
157 MTH00185 COX2 cytochrome c oxi 23.4 4E+02 0.0086 25.5 8.0 76 437-544 139-215 (230)
158 PF05984 Cytomega_UL20A: Cytom 23.4 88 0.0019 24.3 2.7 30 5-34 2-31 (100)
159 PF15415 DUF4622: Protein of u 22.6 5.2E+02 0.011 24.8 8.1 43 214-257 94-137 (310)
160 TIGR03396 PC_PLC phospholipase 22.0 7E+02 0.015 28.2 10.5 65 59-132 592-659 (690)
161 cd00916 Npc2_like Niemann-Pick 21.9 4.3E+02 0.0093 22.4 7.2 61 61-121 22-91 (123)
162 PRK13150 cytochrome c-type bio 21.8 2E+02 0.0043 25.8 5.1 41 50-91 58-99 (159)
163 PF14344 DUF4397: Domain of un 21.4 4.8E+02 0.01 21.7 11.7 38 243-280 44-83 (122)
164 TIGR02988 YaaA_near_RecF S4 do 20.9 56 0.0012 23.6 1.3 23 51-73 35-58 (59)
165 PF03100 CcmE: CcmE; InterPro 20.8 23 0.00049 30.7 -1.0 64 26-91 28-92 (131)
166 cd00407 Urease_beta Urease bet 20.6 3.3E+02 0.0072 22.3 5.6 64 216-280 13-85 (101)
167 MTH00038 COX2 cytochrome c oxi 20.6 4.6E+02 0.01 25.1 7.8 75 437-543 139-214 (229)
168 PF10989 DUF2808: Protein of u 20.3 3E+02 0.0066 24.1 6.1 31 265-295 98-131 (146)
169 PRK13203 ureB urease subunit b 20.3 3.2E+02 0.007 22.4 5.5 64 216-280 13-85 (102)
170 PRK13198 ureB urease subunit b 20.3 2.8E+02 0.0061 24.5 5.5 64 216-280 41-113 (158)
171 PF14392 zf-CCHC_4: Zinc knuck 20.2 1.2E+02 0.0026 21.1 2.8 40 495-534 5-45 (49)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.7e-107 Score=874.40 Aligned_cols=535 Identities=70% Similarity=1.245 Sum_probs=443.7
Q ss_pred CceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccccc
Q 036540 28 AAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQC 107 (562)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~ 107 (562)
+++|+|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.|+++++|||||+++.+++|+||++++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEeCCCCCceEEecCchhhcccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhcccCC
Q 036540 108 PIKTGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLG 187 (562)
Q Consensus 108 ~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 187 (562)
+|+||++++|+|++++++||||||||...+++||+|+|||+++.+.+++++..++|++|+++||++.+...++......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999988889999999999987766666677899999999999998887766655555
Q ss_pred CCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeC
Q 036540 188 LPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIA 267 (562)
Q Consensus 188 ~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~ 267 (562)
..+..++.++|||+.++++.|+....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55557789999999988888987777899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCchhhccccccccCCCCCC
Q 036540 268 PGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKLRSLNTPQ 347 (562)
Q Consensus 268 pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~ 347 (562)
+||||||+|++++.+|+|||++.....+...+.+....|+|+|.+......+..+..+..++......+...++.+..+.
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQ 320 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccC
Confidence 99999999999998899999998654332223445679999999865433333333333333211111222344444344
Q ss_pred CCCCCCCCcceEEEEEeccCCCCCCC----CCCCceeEEeecccccccCccccceeeeccccccccCCCCCCCCCcCcCC
Q 036540 348 YPANVPLRVDRHLFYTIGLGQNPCPS----CQNGTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYT 423 (562)
Q Consensus 348 ~p~~~p~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~ 423 (562)
++..+|..+++++.+.+.+....... ..++..+.|++|+++|..|.+++|++.+.+++|.+..+++..+|..|+++
T Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 400 (539)
T TIGR03389 321 YPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYT 400 (539)
T ss_pred CCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCC
Confidence 44445556677776666543221100 11355788999999999898898887776666767667788888888766
Q ss_pred CCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceee
Q 036540 424 GAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVG 503 (562)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~ 503 (562)
+...+.+...+.+.+++.++.|++|||+|+|...+....||||||||+||||++|.|.|+..+....+|+.||++|||+.
T Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~ 480 (539)
T TIGR03389 401 GTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVG 480 (539)
T ss_pred CCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEE
Confidence 55222222234467889999999999999997533355899999999999999999999876555578999999999999
Q ss_pred ecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 036540 504 VPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKDLPPC 562 (562)
Q Consensus 504 vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 562 (562)
||++||++|||++||||.|+|||||+||+..||+++|.+.++.+..++++++|..+|+|
T Consensus 481 vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 481 VPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999999988877778899999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=8.4e-105 Score=844.43 Aligned_cols=535 Identities=28% Similarity=0.453 Sum_probs=426.5
Q ss_pred HHHHHHHHHHhhhccCcccCceEEEEEEEEEEEeecCC--ceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEE
Q 036540 9 LVLLLTIFYFLGFLSFPADAAVKKYQFDVQVKNVSRLC--NSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIH 86 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH 86 (562)
+|+.++++++++.+...|.+++++|+|+|+...+++|| ..+.+++|||++|||+|++++||+|+|+|+|.++++++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIH 85 (596)
T PLN00044 6 FLLLLAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLT 85 (596)
T ss_pred HHHHHHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEE
Confidence 44444444444444334778899999999999999999 4568999999999999999999999999999999999999
Q ss_pred ecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCC-cce
Q 036540 87 WHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPY-QET 164 (562)
Q Consensus 87 ~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~-~e~ 164 (562)
|||++|..++|+||+++ |||||+||++|+|+|++++++||||||+|.+.|+ +||+|+|||+++...+.++...+ +|.
T Consensus 86 WHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~ 164 (596)
T PLN00044 86 WHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDI 164 (596)
T ss_pred ECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccce
Confidence 99999999999999988 9999999999999999977999999999999999 89999999999876666665444 799
Q ss_pred EEEEeeccccCHHHHHHhcccCCCCCCCCCceeECCccCCCCCCC----CCcceEEEEecCcEEEEEEEecCCCCeEEEE
Q 036540 165 NIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCS----EKHTFAMEVESGKTYLLRIVNAALNDELFFA 240 (562)
Q Consensus 165 ~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~----~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~ 240 (562)
+++++||++.+...+ ......|..+..++..+|||+....++|+ ....+.++|++|++|||||||++....+.|+
T Consensus 165 ~i~l~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fs 243 (596)
T PLN00044 165 TLFIADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFR 243 (596)
T ss_pred EEEecccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEE
Confidence 999999999886654 33344454445678999999965444554 2234689999999999999999999999999
Q ss_pred EcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCC-eEEEEEee-cCCCCCCCCCcceEEEEEecCCCCCCC
Q 036540 241 IAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPS-RYFMAARP-FMDAPIPVDNKTVTAILQYKGIPNTVL 318 (562)
Q Consensus 241 l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G-~~~i~~~~-~~~~~~~~~~~~~~ail~y~~~~~~~~ 318 (562)
|+||+|+||++||.+++|+.+|.|.|++||||||+|+++++++ +|||++.. +..+ ..+++....|||+|.++.....
T Consensus 244 IdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~-~~~~~~~~~AIl~Y~~~~~~~~ 322 (596)
T PLN00044 244 IQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDA-AVVDKLTGVAILHYSNSQGPAS 322 (596)
T ss_pred ECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccC-ccccCcceeEEEEECCCCCCCC
Confidence 9999999999999999999999999999999999999999765 89999864 2222 2245567889999987654221
Q ss_pred CCCCCCCC-CCCchhhccccccccCCCCCCCCCCCCCCcceEEEEEeccCC-CCCC-CCCCCceeEEeecccccccCccc
Q 036540 319 PTLPSLPA-PSDTNFALNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQ-NPCP-SCQNGTQLTASLNNITFVMPKIG 395 (562)
Q Consensus 319 ~~~p~~p~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~-~~~~-~~~~g~~~~~~~n~~~~~~p~~~ 395 (562)
...|..|. +.+......+...++.+..+..+...|...+....+.+.... ..+. ......++.|++||.+|..|+.+
T Consensus 323 ~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p 402 (596)
T PLN00044 323 GPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTP 402 (596)
T ss_pred CCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCc
Confidence 11344443 444443333333444443332222333333333233322110 0000 00111368899999999999999
Q ss_pred cceeeeccccccccCCCCCCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEE
Q 036540 396 LLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVV 475 (562)
Q Consensus 396 ~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl 475 (562)
+|.+++.+.+|.+..+||+.||.. .....+.++.+++|++|||+|+|.. ...||||||||+|+||
T Consensus 403 ~L~a~~~~~~gv~~~~fp~~pp~~------------~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vv 467 (596)
T PLN00044 403 LMLAQIFNVPGVFKLDFPNHPMNR------------LPKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVV 467 (596)
T ss_pred chhhhhccCCCcccCCCCCCCCcc------------ccccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEE
Confidence 998877778899988888877631 1123578889999999999999953 5689999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCC-CCCCCC
Q 036540 476 GSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSP-DQSIVP 554 (562)
Q Consensus 476 ~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~ 554 (562)
++|.|.|++. ++..+|+.||++||||.||++||++|||++||||.|+|||||+.|...||.+.|.|+++.+. .+++++
T Consensus 468 g~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~ 546 (596)
T PLN00044 468 GMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLP 546 (596)
T ss_pred eecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccC
Confidence 9999999965 45689999999999999999999999999999999999999999999999999999998875 678999
Q ss_pred CCCCCCCC
Q 036540 555 PPKDLPPC 562 (562)
Q Consensus 555 ~p~~~~~c 562 (562)
||.++++|
T Consensus 547 pP~~~~~C 554 (596)
T PLN00044 547 IPDNAIFC 554 (596)
T ss_pred CCcccCcc
Confidence 99999999
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=7.7e-103 Score=827.03 Aligned_cols=502 Identities=28% Similarity=0.475 Sum_probs=407.9
Q ss_pred cccCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcc
Q 036540 25 PADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYI 104 (562)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~ 104 (562)
....++++|+|+|+...+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||+++..++|+||+++
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~- 89 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG- 89 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-
Confidence 4456668999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhc
Q 036540 105 TQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQG 183 (562)
Q Consensus 105 t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (562)
+||||+||++|+|+|++++++||||||+|...|+ +||+|+|||.++...+.+++.+++|++++++||++.+...+.. .
T Consensus 90 tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~ 168 (536)
T PLN02792 90 TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-I 168 (536)
T ss_pred CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-H
Confidence 8999999999999999967899999999999998 8999999998766555566667889999999999987665333 3
Q ss_pred ccCCCC-CCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEe
Q 036540 184 NKLGLP-PQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQ 262 (562)
Q Consensus 184 ~~~g~~-~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d 262 (562)
...|.. +..++.++|||+... ..+.++|++||+|||||||++....+.|+|+||+|+|||+||.+++|..++
T Consensus 169 ~~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~ 241 (536)
T PLN02792 169 LDGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYT 241 (536)
T ss_pred hhccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCccee
Confidence 333332 336799999999642 126799999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCchhhccccccccC
Q 036540 263 AILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKLRS 342 (562)
Q Consensus 263 ~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~ 342 (562)
+|.|+|||||||+|++++++|+|+|++.....+ .+....|||+|.++..... ..+..|.+++......+...++.
T Consensus 242 ~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~ 316 (536)
T PLN02792 242 SLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRT 316 (536)
T ss_pred EEEEccCceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhh
Confidence 999999999999999999889999998753222 2346789999987654321 12333433433322222222233
Q ss_pred CCCCCCCCCCCCCc--------ceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccceeeeccccccccCC-CC
Q 036540 343 LNTPQYPANVPLRV--------DRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTD-FP 413 (562)
Q Consensus 343 l~~~~~p~~~p~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~-~~ 413 (562)
+..+..+...|... ++++.+...+.. .+..+.|++|+.+|..|++++|.+++.++.|.+..+ |+
T Consensus 317 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~ 389 (536)
T PLN02792 317 NLTASGPRTNPQGSYHYGKMKISRTLILESSAAL-------VKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIP 389 (536)
T ss_pred ccCCCCCCCCCCcccccceeccceeEEecccccc-------cCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCc
Confidence 32322233334222 222222221111 123578999999999999999988777777777653 66
Q ss_pred CCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCC
Q 036540 414 DRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNL 493 (562)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~ 493 (562)
..||..++ ...++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|+
T Consensus 390 ~~p~~~~~-----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl 454 (536)
T PLN02792 390 DKPRRGGG-----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNL 454 (536)
T ss_pred cCCcccCC-----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCc
Confidence 66653221 123577889999999999999964 55899999999999999999999874 4668999
Q ss_pred CCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 036540 494 VDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKDLPPC 562 (562)
Q Consensus 494 ~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 562 (562)
.||++||||.||++||++|||++||||.|+||||+.+|+..||+++|.|+++.+..+++++||.++++|
T Consensus 455 ~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 455 KDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred CCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999999999999999999999999998888999999999999
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.1e-102 Score=827.80 Aligned_cols=509 Identities=26% Similarity=0.471 Sum_probs=402.2
Q ss_pred CcccCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCc
Q 036540 24 FPADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAY 103 (562)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~ 103 (562)
..+.+++++|+|+|+...+++||+.+.+++|||++|||+||+++||+|+|+|+|.|+++++|||||+++..++|+||+++
T Consensus 21 ~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~ 100 (552)
T PLN02354 21 VRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG 100 (552)
T ss_pred hhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHh
Q 036540 104 ITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQ 182 (562)
Q Consensus 104 ~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 182 (562)
|||+|+||++|+|+|++.+++||||||+|...|+ +||+|+|||+++...+.+++..++|++++++||+++....+..
T Consensus 101 -TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~- 178 (552)
T PLN02354 101 -TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK- 178 (552)
T ss_pred -CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-
Confidence 9999999999999999866899999999999999 8999999999987666666667889999999999987665433
Q ss_pred cccCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEe
Q 036540 183 GNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQ 262 (562)
Q Consensus 183 ~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d 262 (562)
....|..+..++.++|||+....+. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..++
T Consensus 179 ~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~ 255 (552)
T PLN02354 179 FLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYD 255 (552)
T ss_pred HHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCccee
Confidence 3334433445789999999753221 2347899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCC--Cchhhccccccc
Q 036540 263 AILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPS--DTNFALNYSSKL 340 (562)
Q Consensus 263 ~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~--~~~~~~~~~~~l 340 (562)
+|.|++||||||+|++++++|+|||++.....+ .+....|+|+|.++.....+..|..+.-. ......++...+
T Consensus 256 ~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l 331 (552)
T PLN02354 256 SLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNL 331 (552)
T ss_pred EEEEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcc
Confidence 999999999999999999889999998742111 33567899999886543222222221100 000011111112
Q ss_pred cCCCCCCCCCCC----CCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccceeeecccc-ccccCC-CCC
Q 036540 341 RSLNTPQYPANV----PLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAHYFNIS-GVFRTD-FPD 414 (562)
Q Consensus 341 ~~l~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~-g~~~~~-~~~ 414 (562)
........+... ....++++.+...+.. .+| .+.|++||.+|..|+.|+|.+.+.++. |.+..+ ++.
T Consensus 332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~ 404 (552)
T PLN02354 332 TASAARPNPQGSYHYGKINITRTIKLVNSASK------VDG-KLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKD 404 (552)
T ss_pred cccccCCCCCCccccccccccceEEEeccccc------CCc-eEEEEECCccCCCCCCChHHhhhhcccCCccccCcccc
Confidence 211111111000 0122334433332111 122 577999999999999998887665443 555433 344
Q ss_pred CCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCC
Q 036540 415 RPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLV 494 (562)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~ 494 (562)
.+|..++ ....+..++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|+.
T Consensus 405 ~pp~~~~----------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~~~~~~-~~~~nl~ 470 (552)
T PLN02354 405 NPPAKIT----------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGTWTPEK-RKNYNLL 470 (552)
T ss_pred CCccccC----------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCCCCccc-cccCCcC
Confidence 4442211 1234567889999999999999964 568999999999999999999998753 5678999
Q ss_pred CCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 036540 495 DPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKDLPPC 562 (562)
Q Consensus 495 ~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 562 (562)
||++|||+.||++||++|||++||||.|+|||||..|+..||.+.+.|.++.+..++++++|++.+.|
T Consensus 471 nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 471 DAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred CCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999998887777888899999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=3.3e-102 Score=825.31 Aligned_cols=515 Identities=28% Similarity=0.487 Sum_probs=402.9
Q ss_pred HHHHHHHHHHHhhhccCcccCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEe
Q 036540 8 HLVLLLTIFYFLGFLSFPADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHW 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~ 87 (562)
++|++..+++..++. ..+.+++++|+|+|++..+++||+.+.+|+|||++|||+||+++||+|+|+|+|.|+++++|||
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHW 86 (539)
T PLN02835 8 HLLLGVLAVLSSVSL-VNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTW 86 (539)
T ss_pred HHHHHHHHHHHHHhh-hhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEe
Confidence 445554433322222 3456789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEE
Q 036540 88 HGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNI 166 (562)
Q Consensus 88 HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l 166 (562)
||+++..++|+||+++ |||+|+||++|+|+|++++++||||||+|...|+ +||+|+|||+++...+.+++.+++|+++
T Consensus 87 HGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l 165 (539)
T PLN02835 87 NGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTL 165 (539)
T ss_pred CCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEE
Confidence 9999999999999999 9999999999999999867899999999999998 8999999998765555556667999999
Q ss_pred EEeeccccCHHHHHHhcccCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcce
Q 036540 167 ILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNM 246 (562)
Q Consensus 167 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~ 246 (562)
+++||++++...+... ...|.....++.++|||+.. +.++|++|++|||||||+|....+.|+|+||+|
T Consensus 166 ~l~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~ 234 (539)
T PLN02835 166 LVGDWYKTSHKTLQQR-LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTM 234 (539)
T ss_pred EeeccccCCHHHHHHH-hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEE
Confidence 9999999887664433 33444455679999999975 679999999999999999999999999999999
Q ss_pred EEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCC
Q 036540 247 TVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPA 326 (562)
Q Consensus 247 ~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~ 326 (562)
+||++||.+++|..+++|.|++||||||+|++++++|+|||++.....+ .+....|+|+|+++........|..|.
T Consensus 235 ~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~~p~ 310 (539)
T PLN02835 235 KLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPALPS 310 (539)
T ss_pred EEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCCCCc
Confidence 9999999999999999999999999999999999889999998642211 234678999998764322222233222
Q ss_pred CC---CchhhccccccccCCCCCCCCCC---C-CCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCcccccee
Q 036540 327 PS---DTNFALNYSSKLRSLNTPQYPAN---V-PLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQA 399 (562)
Q Consensus 327 ~~---~~~~~~~~~~~l~~l~~~~~p~~---~-p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~ 399 (562)
.. +......+...+........+.. . ....++++.+...... .+| ...|++|+.+|..|+.++|.+
T Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~w~iN~~s~~~p~~P~L~~ 383 (539)
T PLN02835 311 GELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL------ING-KQRYAVNGVSYVNSDTPLKLA 383 (539)
T ss_pred cccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccc------cCC-eEEEEECCcccCCCCCChhhh
Confidence 11 00000000001111111111000 0 0112344433321111 123 467999999999888888877
Q ss_pred eeccccccccCCC-CCCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEec
Q 036540 400 HYFNISGVFRTDF-PDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSG 478 (562)
Q Consensus 400 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g 478 (562)
++.+.+|.++... +..++ +.....++.++.++.|++|||+|+|.. ...||||||||+||||++|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G 448 (539)
T PLN02835 384 DYFGIPGVFSVNSIQSLPS------------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYG 448 (539)
T ss_pred hhhcCCCccccCccccCCC------------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEecc
Confidence 6655555554321 11111 111234578889999999999999965 6689999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCCCCCC
Q 036540 479 IGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKD 558 (562)
Q Consensus 479 ~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~ 558 (562)
.|.|++.. ...+|+.||++||||.||++||++|||++||||.|+|||||++|+..||+++|.|+++.+...++++||.+
T Consensus 449 ~g~~~~~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~ 527 (539)
T PLN02835 449 SGQWTPAK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDN 527 (539)
T ss_pred CCCCCccc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcc
Confidence 99998653 45678899999999999999999999999999999999999999999999999999998888899999999
Q ss_pred CCCC
Q 036540 559 LPPC 562 (562)
Q Consensus 559 ~~~c 562 (562)
+|+|
T Consensus 528 ~~~C 531 (539)
T PLN02835 528 ALLC 531 (539)
T ss_pred cccc
Confidence 9999
No 6
>PLN02991 oxidoreductase
Probab=100.00 E-value=3.1e-102 Score=820.92 Aligned_cols=497 Identities=27% Similarity=0.492 Sum_probs=402.1
Q ss_pred ccCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCccc
Q 036540 26 ADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYIT 105 (562)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t 105 (562)
+.+++++|+|+|+...+++||+.+.+++|||++|||+|++++||+|+|+|+|.|+++++|||||+++...+|+||+++ |
T Consensus 24 ~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-t 102 (543)
T PLN02991 24 AEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-T 102 (543)
T ss_pred ccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-C
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred ccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhcc
Q 036540 106 QCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGN 184 (562)
Q Consensus 106 ~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 184 (562)
||+|+||++|+|+|++++++||||||+|.+.|+ +||+|+|||+++...+.++..+++|++++++||++++...+... .
T Consensus 103 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~-~ 181 (543)
T PLN02991 103 TCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ-L 181 (543)
T ss_pred CCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-h
Confidence 999999999999999966899999999999888 89999999998876666666678899999999999887665433 3
Q ss_pred cCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEE
Q 036540 185 KLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAI 264 (562)
Q Consensus 185 ~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v 264 (562)
..++....++.++|||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..++++
T Consensus 182 ~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l 252 (543)
T PLN02991 182 DNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSL 252 (543)
T ss_pred hcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEE
Confidence 3444555789999999964 2579999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCchhhc----cccccc
Q 036540 265 LIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFAL----NYSSKL 340 (562)
Q Consensus 265 ~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~----~~~~~l 340 (562)
.|++||||||+|++++++|+|||++...... ......|||+|+++........|..|. +..... .....+
T Consensus 253 ~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~~p~~p~--~~~~~~~~~~~~~~~l 326 (543)
T PLN02991 253 DVHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGPIPDGPI--QLSWSFDQARAIKTNL 326 (543)
T ss_pred EEcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCCCCCCCc--cccccccchhhhhhcc
Confidence 9999999999999999889999998753221 234568999999865422111222221 111111 111222
Q ss_pred cCCCCCCCCCC----CCCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccceeeeccccccccCC-CCCC
Q 036540 341 RSLNTPQYPAN----VPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTD-FPDR 415 (562)
Q Consensus 341 ~~l~~~~~p~~----~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~-~~~~ 415 (562)
..+.....|.. .....++.+.+...+.. .+| .+.|++|+.+|..|.+++|.++|.+++|.|..+ ++..
T Consensus 327 ~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~ 399 (543)
T PLN02991 327 TASGPRPNPQGSYHYGKINITRTIRLANSAGN------IEG-KQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQ 399 (543)
T ss_pred cCCCCCCCCCccccccccccceeEEEeecccc------cCc-eEEEEECCCccCCCCCChhhhhhhcccCcccccccccc
Confidence 22111111100 01112222222221111 023 568999999999999999988777777877654 4444
Q ss_pred CCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 036540 416 PPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVD 495 (562)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~ 495 (562)
++.. .......++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|+.|
T Consensus 400 ~~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~n 463 (543)
T PLN02991 400 PTNG------------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA-SRKVYNLND 463 (543)
T ss_pred CCCC------------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-cccccCCCC
Confidence 3311 1112356788999999999999964 56899999999999999999999976 456899999
Q ss_pred CCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 036540 496 PPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKDLPPC 562 (562)
Q Consensus 496 p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 562 (562)
|++|||+.||++||++|||++||||.|+|||||..|+..||.+++.|.++.+..+++++||.++|+|
T Consensus 464 P~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 464 AVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred CCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 9999999999999999999999999999999999999999999999999999888999999999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.5e-100 Score=809.78 Aligned_cols=499 Identities=29% Similarity=0.495 Sum_probs=391.1
Q ss_pred cCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccc
Q 036540 27 DAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQ 106 (562)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~ 106 (562)
.+++++|+|+|+...+++||+.+.+++|||++|||+||+++||+|+|+|+|.|+++|+|||||+++..++|+||+++ ||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQ 101 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TN 101 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-Cc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhccc
Q 036540 107 CPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNK 185 (562)
Q Consensus 107 ~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 185 (562)
|||+||++|+|+|++++++||||||+|.+.|+ +||+|+|||+++...+.+++.+++|+.++++||++.+...+.. ...
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~ 180 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SLD 180 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hhh
Confidence 99999999999999966899999999999998 8999999999987766666677899999999999987654332 222
Q ss_pred CCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEE
Q 036540 186 LGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAIL 265 (562)
Q Consensus 186 ~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~ 265 (562)
.|.....++.++|||+.. ..+.+++++|++|||||||++....+.|+|+||+|+||++||.+++|..+++|.
T Consensus 181 ~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~ 252 (545)
T PLN02168 181 NGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLD 252 (545)
T ss_pred cCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEE
Confidence 333344678999999963 126899999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEeCCCC-C---eEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCchhhcccccccc
Q 036540 266 IAPGQTTNVLVKADQSP-S---RYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKLR 341 (562)
Q Consensus 266 l~pgeR~dv~v~~~~~~-G---~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~ 341 (562)
|++||||||+|++++.+ | +|||++.....+ ......|+|+|+++...+....+..|...+.....+....++
T Consensus 253 i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~ 328 (545)
T PLN02168 253 IHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIR 328 (545)
T ss_pred EcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhh
Confidence 99999999999998654 4 899999863222 235678999998764432111333333333211111111122
Q ss_pred CCCCCCCCCCCCC--------CcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccceeeeccccccccCC-C
Q 036540 342 SLNTPQYPANVPL--------RVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTD-F 412 (562)
Q Consensus 342 ~l~~~~~p~~~p~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~-~ 412 (562)
....+..+...|. ..++++.+.... . ..+| ...|++||.+|..|++|+|..++.++++.+..+ +
T Consensus 329 ~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~----~~~g-~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~ 401 (545)
T PLN02168 329 MDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M----LSSG-KLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMF 401 (545)
T ss_pred hcCCCCCCCCCCcccccccccccceeEEecccc--c----ccCc-eEEEEECCCccCCCCCchhhhhhcccccccccCCC
Confidence 1111211111221 122333222111 0 0123 577999999999999988766554444333322 3
Q ss_pred CCCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCC
Q 036540 413 PDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFN 492 (562)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~ 492 (562)
+..|+. .....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|
T Consensus 402 ~~~p~~------------~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~N 465 (545)
T PLN02168 402 PVYPSN------------KTPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSESK-KAGYN 465 (545)
T ss_pred ccCCCc------------CccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCccc-cccCC
Confidence 433331 01112467789999999999999964 568999999999999999999998653 45789
Q ss_pred CCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCC------CCCCCCCCCCCCCCC
Q 036540 493 LVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKS------PDQSIVPPPKDLPPC 562 (562)
Q Consensus 493 ~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~------~~~~~~~~p~~~~~c 562 (562)
+.||++|||+.||++||++|||++||||.|+|||||++|...||.+.+.|+++.. ..+.+++||.++++|
T Consensus 466 l~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 466 LVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred CCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 9999999999999999999999999999999999999999999988888864433 245788999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-99 Score=795.77 Aligned_cols=528 Identities=49% Similarity=0.894 Sum_probs=466.5
Q ss_pred hccCcccCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCC
Q 036540 21 FLSFPADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADG 100 (562)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG 100 (562)
.+...+.++.+.|+++++...+.++|..+.++++||++|||+|+|++||+|.|+|.|.+.++++|||||+++...+|+||
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG 98 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG 98 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC
Confidence 33455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeecccc-CHHH
Q 036540 101 PAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNS-DVET 178 (562)
Q Consensus 101 v~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~ 178 (562)
+++|||||+||++|+|+|+++++.||||||+|...++ +|++|+|||.++...+.|++.+++|++++++||+.+ +...
T Consensus 99 -~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 99 -VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred -CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHH
Confidence 8999999999999999999988999999999999999 899999999999988888888999999999999995 7777
Q ss_pred HHHhcccCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCc
Q 036540 179 IVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKP 258 (562)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p 258 (562)
+.......+..+..+|..+|||+.+..++| .+.+++++||+|||||+|+|....+.|+|.+|+|+||++||.+++|
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p 253 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKP 253 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEee
Confidence 777777777656558999999999988898 5899999999999999999999999999999999999999999999
Q ss_pred eEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCC-CCCCCcceEEEEEecCCCCCCC---CCCCCCCCCCCchhhc
Q 036540 259 FTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAP-IPVDNKTVTAILQYKGIPNTVL---PTLPSLPAPSDTNFAL 334 (562)
Q Consensus 259 ~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~~---~~~p~~p~~~~~~~~~ 334 (562)
..++++.|.||||++|++++++.+++|+|.+.++.++. ..+ +....++++|.+...... +..+.+|...+.....
T Consensus 254 ~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~ 332 (563)
T KOG1263|consen 254 FTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWST 332 (563)
T ss_pred eeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhh
Confidence 99999999999999999999999999999998866653 223 677899999998333221 2223455555655566
Q ss_pred cccccccCCCCCCCCCCCCCCcceEEEEEeccCCCCCCCC-CCCceeEEeecccccccCcc-ccceeeeccccccccCCC
Q 036540 335 NYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSC-QNGTQLTASLNNITFVMPKI-GLLQAHYFNISGVFRTDF 412 (562)
Q Consensus 335 ~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~n~~~~~~p~~-~~l~~~~~~~~g~~~~~~ 412 (562)
.+...++.+....++...|...+....++.+.+...+++. ..++++.+++|+.+|..|+. .+++.++...+|.+..++
T Consensus 333 ~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~ 412 (563)
T KOG1263|consen 333 YQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDF 412 (563)
T ss_pred hhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCcc
Confidence 6666788887777777788888777766666655555433 34567889999999999998 567777777778888889
Q ss_pred CCCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCC-CCC
Q 036540 413 PDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDP-AKF 491 (562)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~-~~~ 491 (562)
+..|+..+++++ .+.++.++.++++++||++++|.+......||||||||+|+|++.|.|.|++.++. ..+
T Consensus 413 p~~P~~~~~~~~--------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~y 484 (563)
T KOG1263|consen 413 PDKPPIKFDYTG--------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKY 484 (563)
T ss_pred CCCCccccCCcc--------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhc
Confidence 999988777765 24678999999999999999998877777899999999999999999999996566 789
Q ss_pred CCCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 036540 492 NLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKDLPPC 562 (562)
Q Consensus 492 ~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 562 (562)
|+.+|+.||||.|||+||++|||.+||||.|+|||||++|...||.++|.|.++.+..+++.+||.+.++|
T Consensus 485 Nl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 485 NLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred ccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.4e-95 Score=781.68 Aligned_cols=522 Identities=35% Similarity=0.580 Sum_probs=395.8
Q ss_pred HHhhhccCcccCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCC-CCCceEEecCccccCC
Q 036540 17 YFLGFLSFPADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHA-QYNMSIHWHGLKQYRN 95 (562)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~ 95 (562)
++.......+.+++++|+|+|+...+++||+.+.+|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~ 90 (566)
T PLN02604 11 LFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGT 90 (566)
T ss_pred HHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCC
Confidence 333333344668999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeecccc
Q 036540 96 GWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNS 174 (562)
Q Consensus 96 ~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~ 174 (562)
+|+||+++++||+|+||++++|+|++ +++||||||||...|+ +||+|+|||+++.++..++ .+++|.+++++||+++
T Consensus 91 ~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~ 168 (566)
T PLN02604 91 PWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHK 168 (566)
T ss_pred ccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccC
Confidence 99999999999999999999999998 7999999999999888 8999999999886544444 3588999999999998
Q ss_pred CHHHHHHhcccC-CCCCCCCCceeECCccCCCCCCCC-----------------CcceEEEEecCcEEEEEEEecCCCCe
Q 036540 175 DVETIVNQGNKL-GLPPQTSDAHTINGKSGPLFPCSE-----------------KHTFAMEVESGKTYLLRIVNAALNDE 236 (562)
Q Consensus 175 ~~~~~~~~~~~~-g~~~~~~~~~~iNG~~~~~~~~~~-----------------~~~~~~~v~~G~~~rlRliN~~~~~~ 236 (562)
...+........ ......++..+|||+.. +.|+. ...+.+++++|++|||||||+++...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~ 246 (566)
T PLN02604 169 STYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSA 246 (566)
T ss_pred CHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccce
Confidence 876554433211 11113468899999864 34431 13357899999999999999999999
Q ss_pred EEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCC-eEEEEEeecCCCCCCCCCcceEEEEEecCCCC
Q 036540 237 LFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPS-RYFMAARPFMDAPIPVDNKTVTAILQYKGIPN 315 (562)
Q Consensus 237 ~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G-~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~ 315 (562)
+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++++| +|||++.....+. +.....|||+|.+...
T Consensus 247 ~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~ 323 (566)
T PLN02604 247 LSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHP 323 (566)
T ss_pred EEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEECCCCC
Confidence 99999999999999999999999999999999999999999998775 8999986532221 2356789999986432
Q ss_pred C-CCCCC-CCCCCCCCchhhccccccccCCCCCCCCCCCCCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCc
Q 036540 316 T-VLPTL-PSLPAPSDTNFALNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393 (562)
Q Consensus 316 ~-~~~~~-p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~ 393 (562)
. ..+.. +..+.+++..........+..+... +...+...++++.+...... ....+.|++|+.+|..|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~-------~~~~~~w~in~~~~~~p~ 394 (566)
T PLN02604 324 RRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGY--IHPPPLTSDRVIVLLNTQNE-------VNGYRRWSVNNVSFNLPH 394 (566)
T ss_pred CCCCCCCCCCCCcccccchhhcchhcccccccC--cCCCCCCCCeEEEEeccccc-------cCCeEEEEECcccCCCCC
Confidence 1 11111 1112222211111100011111111 11123345666554332211 123567999999999888
Q ss_pred cccceeeeccccccccCCCCCCCCCcCcC---CCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC---CCCCCCeee
Q 036540 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNY---TGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL---TVESHPFHL 467 (562)
Q Consensus 394 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~---~~~~HP~Hl 467 (562)
.|+|.+.+....+.++.+ .++..+.+ +......+...+.+..++.++.|++||++|+|...+ ....|||||
T Consensus 395 ~p~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HL 471 (566)
T PLN02604 395 TPYLIALKENLTGAFDQT---PPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHL 471 (566)
T ss_pred CchhHhhhhcCCCcccCC---CCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEe
Confidence 888776555444555422 11211111 000000111123456788999999999999997422 356799999
Q ss_pred cCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCC
Q 036540 468 HGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKS 547 (562)
Q Consensus 468 HG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~ 547 (562)
|||+||||++|.|.|++..+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+.
T Consensus 472 HGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~---- 547 (566)
T PLN02604 472 HGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG---- 547 (566)
T ss_pred cCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC----
Confidence 9999999999999998776667899999999999999999999999999999999999999999999999999654
Q ss_pred CCCCCCCCCCCCCCC
Q 036540 548 PDQSIVPPPKDLPPC 562 (562)
Q Consensus 548 ~~~~~~~~p~~~~~c 562 (562)
.+.++.+|..+++|
T Consensus 548 -~~~~~~~p~~~~~C 561 (566)
T PLN02604 548 -IERVGKLPSSIMGC 561 (566)
T ss_pred -hhhccCCCCCcCcc
Confidence 23667889999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.7e-95 Score=780.55 Aligned_cols=512 Identities=33% Similarity=0.574 Sum_probs=383.4
Q ss_pred ccCceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCcc
Q 036540 26 ADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAYI 104 (562)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~~ 104 (562)
+.+++++|+|+++...+++||+.+.+++|||++|||+||+++||+|+|+|+|.|+ ++++|||||+++..++|+||++++
T Consensus 19 ~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gv 98 (574)
T PLN02191 19 ASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGV 98 (574)
T ss_pred hccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcc
Confidence 4468999999999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhc
Q 036540 105 TQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQG 183 (562)
Q Consensus 105 t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~ 183 (562)
|||+|+||++|+|+|++ .++||||||||.+.|+ +||+|+|||+++.+...+. .+|+|++|+++||++..........
T Consensus 99 tq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~ 176 (574)
T PLN02191 99 TQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGL 176 (574)
T ss_pred ccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhh
Confidence 99999999999999998 7899999999999998 8999999998765433222 3689999999999998654332221
Q ss_pred ccCC-CCCCCCCceeECCccCCCCCCCC--------------------CcceEEEEecCcEEEEEEEecCCCCeEEEEEc
Q 036540 184 NKLG-LPPQTSDAHTINGKSGPLFPCSE--------------------KHTFAMEVESGKTYLLRIVNAALNDELFFAIA 242 (562)
Q Consensus 184 ~~~g-~~~~~~~~~~iNG~~~~~~~~~~--------------------~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~ 242 (562)
.... .....++.++|||+.. +.|+. ....+++|++|++|||||||+|+...+.|+|+
T Consensus 177 ~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~id 254 (574)
T PLN02191 177 SSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQ 254 (574)
T ss_pred ccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEEC
Confidence 1111 1123468899999864 33421 12236999999999999999999999999999
Q ss_pred CcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCC-CeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCC-
Q 036540 243 GHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSP-SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPT- 320 (562)
Q Consensus 243 gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~-G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~- 320 (562)
||+|+|||+||.+++|+.+++|.|++||||||+|++++++ ++|||++.....+ .......|||+|.+......+.
T Consensus 255 gH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~---~~~~~~~ail~Y~~~~~~~~p~~ 331 (574)
T PLN02191 255 GHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRK---PNTTQALTILNYVTAPASKLPSS 331 (574)
T ss_pred CCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccC---CCCCCceEEEEECCCCCCCCCCC
Confidence 9999999999999999999999999999999999999976 5899998643222 1222346999998755432111
Q ss_pred -CCCCCCCCCchhhccccccccCCCCCCCCCCCCC-CcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccce
Q 036540 321 -LPSLPAPSDTNFALNYSSKLRSLNTPQYPANVPL-RVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQ 398 (562)
Q Consensus 321 -~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~ 398 (562)
.+..|.+.+......+...+ +.....+ ..|. ..+.++.+..... ......|.+|+.+|..|..|+|.
T Consensus 332 ~~~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~~--------~~~~~~~~~n~~s~~~p~~P~L~ 400 (574)
T PLN02191 332 PPPVTPRWDDFERSKNFSKKI--FSAMGSP-SPPKKYRKRLILLNTQNL--------IDGYTKWAINNVSLVTPATPYLG 400 (574)
T ss_pred CCCCCCcccccchhhcccccc--cccccCC-CCCCcccceEEEecccce--------eCCeEEEEECcccCcCCCcchHH
Confidence 12223333322111111111 1111111 1222 2344443322110 11245799999999988888777
Q ss_pred eeeccccccccCCCCCCC-CCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC---CCCCCCeeecCCCeEE
Q 036540 399 AHYFNISGVFRTDFPDRP-PVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFV 474 (562)
Q Consensus 399 ~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~---~~~~HP~HlHG~~F~v 474 (562)
+.+.+..+.+....+... +..|+..+. ......+.+..++.++.|++|||+|+|.... ....||||||||+|||
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~V 478 (574)
T PLN02191 401 SVKYNLKLGFNRKSPPRSYRMDYDIMNP--PPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWV 478 (574)
T ss_pred HHhhccCcccccCCCcccccccccccCC--CccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEE
Confidence 655544444433322111 111111111 1111123456788999999999999996421 2568999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCC
Q 036540 475 VGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVP 554 (562)
Q Consensus 475 l~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~ 554 (562)
|++|.|.|++..+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|... .++++.
T Consensus 479 lg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~-----~~~~~~ 553 (574)
T PLN02191 479 LGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEG-----LNRIGK 553 (574)
T ss_pred EEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecC-----hhhccC
Confidence 999999999755556789999999999999999999999999999999999999999999999999532 234556
Q ss_pred CCCCCCCC
Q 036540 555 PPKDLPPC 562 (562)
Q Consensus 555 ~p~~~~~c 562 (562)
+|..++.|
T Consensus 554 ~p~~~~~C 561 (574)
T PLN02191 554 IPDEALGC 561 (574)
T ss_pred CCcchhhh
Confidence 78888999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.8e-95 Score=777.47 Aligned_cols=508 Identities=33% Similarity=0.594 Sum_probs=387.3
Q ss_pred eEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCcccccc
Q 036540 30 VKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAYITQCP 108 (562)
Q Consensus 30 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~~t~~~ 108 (562)
+|+|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999985 8899999999999999999999999999
Q ss_pred cCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhcccCC
Q 036540 109 IKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLG 187 (562)
Q Consensus 109 i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 187 (562)
|+||++++|+|++ +++||||||||...|+ +||+|+|||+++..+..++ .+|+|++|+++||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7899999999999888 8999999999886544444 36899999999999987765443322211
Q ss_pred -CCCCCCCceeECCccCCCCCCCCC-------------------cceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceE
Q 036540 188 -LPPQTSDAHTINGKSGPLFPCSEK-------------------HTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMT 247 (562)
Q Consensus 188 -~~~~~~~~~~iNG~~~~~~~~~~~-------------------~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~ 247 (562)
.....++.++|||+.. +.|... ....++|++|++|||||||+++...+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113458899999864 234211 124589999999999999999999999999999999
Q ss_pred EEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCC-CeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCC--CCCC
Q 036540 248 VVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSP-SRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPT--LPSL 324 (562)
Q Consensus 248 via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~-G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~--~p~~ 324 (562)
|||+||.+++|+.++.|.|++||||||+|++++.+ |+|||++...... .......|||+|.+......+. .+..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~ 313 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVT 313 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999866 4899998753321 1234578999998754432111 1223
Q ss_pred CCCCCchhhccccccccCCCCCCCCCCCCCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccceeeeccc
Q 036540 325 PAPSDTNFALNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAHYFNI 404 (562)
Q Consensus 325 p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~ 404 (562)
|.+.+......+. +..+..... ...|..+++++++...... ......|++|+.+|..|..|+|.+.+.+.
T Consensus 314 p~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~n~~s~~~p~~p~l~~~~~~~ 383 (541)
T TIGR03388 314 PAWDDFDRSKAFS--LAIKAAMGS-PKPPETSDRRIVLLNTQNK-------INGYTKWAINNVSLTLPHTPYLGSLKYNL 383 (541)
T ss_pred CCccccchhhccc--hhhhccccC-CCCCCCCCcEEEEeccCcc-------cCceEEEEECcccCCCCCccHHHHHhhcC
Confidence 3333321111111 111111111 1223455666654332111 11346799999999988888777655444
Q ss_pred cccccCCCCCCCCCcC--cCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC---CCCCCCeeecCCCeEEEEecC
Q 036540 405 SGVFRTDFPDRPPVPF--NYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL---TVESHPFHLHGYNFFVVGSGI 479 (562)
Q Consensus 405 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~---~~~~HP~HlHG~~F~vl~~g~ 479 (562)
.+.+.... ++..+ +++....+.+...+.+..++.++.|++||++|+|..++ ....||||||||+||||++|.
T Consensus 384 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~ 460 (541)
T TIGR03388 384 LNAFDQKP---PPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGE 460 (541)
T ss_pred CccccCCC---CcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeecc
Confidence 33333221 11111 11111011122334567889999999999999996532 256899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEecCCCCCCCCCCCCCCC
Q 036540 480 GNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGKSPDQSIVPPPKDL 559 (562)
Q Consensus 480 g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~ 559 (562)
|.|+...+...+|+.||++|||+.||++||++|||++||||.|+|||||+||++.||+++|.+. .++++.+|..+
T Consensus 461 g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~~~~~~P~~~ 535 (541)
T TIGR03388 461 GKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VEKVGKLPKEA 535 (541)
T ss_pred CCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----ccccCCCCccc
Confidence 9998665556799999999999999999999999999999999999999999999999999654 24567799999
Q ss_pred CCC
Q 036540 560 PPC 562 (562)
Q Consensus 560 ~~c 562 (562)
++|
T Consensus 536 ~~C 538 (541)
T TIGR03388 536 LGC 538 (541)
T ss_pred cCC
Confidence 999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1e-91 Score=749.30 Aligned_cols=489 Identities=28% Similarity=0.477 Sum_probs=371.5
Q ss_pred EEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCccccccc
Q 036540 31 KKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAYITQCPI 109 (562)
Q Consensus 31 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~~t~~~i 109 (562)
..|+|+|+...+++||+.+.+++|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++...+|+||++++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC-CCCCceEEecCchhhcccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhcccCCC
Q 036540 110 KTGNSYTYDFNVT-GQRGTLWWHAHILWLRATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGL 188 (562)
Q Consensus 110 ~pG~~~~y~~~~~-~~~Gt~wyH~h~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 188 (562)
+||++|+|+|+++ +++||||||||.+.|+.||+|+|||+++...++ .+|+|++|+++||+++....+.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999983 589999999999999988999999998765443 358899999999999887765543332211
Q ss_pred -CCCCCCceeECCccCCCCCC------CCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcc-eEEEEeCCCccCceE
Q 036540 189 -PPQTSDAHTINGKSGPLFPC------SEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHN-MTVVEIDAVYTKPFT 260 (562)
Q Consensus 189 -~~~~~~~~~iNG~~~~~~~~------~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~-~~via~DG~~~~p~~ 260 (562)
....++.++|||+..+...+ ..+..+.++|++||+|||||||+|+...+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 12345789999996533100 0123478999999999999999999999999999999 999999999999999
Q ss_pred EeEEEeCCCceEEEEEEeCCC-------CCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCchhh
Q 036540 261 TQAILIAPGQTTNVLVKADQS-------PSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFA 333 (562)
Q Consensus 261 ~d~v~l~pgeR~dv~v~~~~~-------~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~ 333 (562)
++++.|++||||||+|++++. +|+|||++.....+ +.....|||+|.++.....+..+..+........
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~ 321 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASKLPSVPETPPLPLPNST 321 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcc
Confidence 999999999999999999985 38999998753221 2345689999986544333222222221110111
Q ss_pred ccc-cccccCCCCCCCC-CCCCCCcceEEEEEeccCCCCCCCCCCCceeEEeeccccccc--Cccccceeeecccccccc
Q 036540 334 LNY-SSKLRSLNTPQYP-ANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVM--PKIGLLQAHYFNISGVFR 409 (562)
Q Consensus 334 ~~~-~~~l~~l~~~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~--p~~~~l~~~~~~~~g~~~ 409 (562)
..+ ...+.++.....+ ...+..+++++.+.+.+.... ......|++|+.+|.. |..|+|...+.+. .
T Consensus 322 ~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~-----~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~- 392 (538)
T TIGR03390 322 YDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP-----LNGRVAWLQNGLSWTESVRQTPYLVDIYENG---L- 392 (538)
T ss_pred hhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc-----cCCeEEEEECCcccCCCCCCCchHHHHhcCC---C-
Confidence 111 1123333221111 011344677776666543211 1235779999999985 6777766543221 0
Q ss_pred CCCCCCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCC-----CCCCCCeeecCCCeEEEEecCCCCCC
Q 036540 410 TDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLL-----TVESHPFHLHGYNFFVVGSGIGNFDP 484 (562)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~-----~~~~HP~HlHG~~F~vl~~g~g~~~~ 484 (562)
+..++ |+ .. ...........++.++.|++|||+|+|.... ....||||||||+||||++|.|.|++
T Consensus 393 ---~~~~~--~~--~~--~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~ 463 (538)
T TIGR03390 393 ---PATPN--YT--AA--LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNA 463 (538)
T ss_pred ---CcCCC--cc--cc--cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCC
Confidence 11110 10 00 0000112345678899999999999996421 25789999999999999999999987
Q ss_pred CCCCCCCCCCCCCccceeeec----------CCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEec
Q 036540 485 KKDPAKFNLVDPPERNTVGVP----------TGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVEN 544 (562)
Q Consensus 485 ~~~~~~~~~~~p~~rDTv~vp----------p~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~ 544 (562)
......+++.||++|||+.|| ++||++|||++||||.|+|||||.||+..||+++|.|.+
T Consensus 464 ~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 464 TANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred ccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 654456788999999999996 789999999999999999999999999999999998864
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=4.5e-79 Score=650.32 Aligned_cols=452 Identities=25% Similarity=0.411 Sum_probs=326.7
Q ss_pred CccchhHHHHHHHHHHHHhhhcc---Cc--ccC--------ceEEEEEEEEEEEeecCCceeeEEEEcCcCCCceEEEec
Q 036540 1 MAMQHRRHLVLLLTIFYFLGFLS---FP--ADA--------AVKKYQFDVQVKNVSRLCNSKPIVTVNGMFPGPTIYIRE 67 (562)
Q Consensus 1 ~~~~~~r~~~~~~~~~~~~~~~~---~~--~~~--------~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~ 67 (562)
|...+||+||++++++++++.++ .+ +.+ ..++|+|++++..++++|+.+.+|+|||++|||+||+++
T Consensus 3 ~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~ 82 (587)
T TIGR01480 3 MTAFDRRRFLQGLASGGAAAGLGLWATAAWAERSPLPESVLSGTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWRE 82 (587)
T ss_pred cccccHHHHHHHHHHHHHHHHhhccccchhhcccCCCCcccCCceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEEC
Confidence 34567888885544322222221 11 111 237899999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEE
Q 036540 68 GDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIV 146 (562)
Q Consensus 68 Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~ii 146 (562)
||+|+|+|+|.++++++|||||+++... +||+|+++||+|+||++++|+|++ .++||||||||...|. .||+|+||
T Consensus 83 Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lI 159 (587)
T TIGR01480 83 GDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIAPGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLI 159 (587)
T ss_pred CCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccCCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEE
Confidence 9999999999999999999999998755 999999999999999999999998 7899999999998888 89999999
Q ss_pred EcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhcc---------------------cCCCC---------------C
Q 036540 147 IMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGN---------------------KLGLP---------------P 190 (562)
Q Consensus 147 V~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~---------------------~~g~~---------------~ 190 (562)
|+++..++. .+|+|++|+++||++.+...++.... ..|.. +
T Consensus 160 V~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 236 (587)
T TIGR01480 160 IDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTP 236 (587)
T ss_pred ECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCC
Confidence 998755443 35899999999999876655433211 00100 0
Q ss_pred -------CCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeE
Q 036540 191 -------QTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQA 263 (562)
Q Consensus 191 -------~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~ 263 (562)
.....++|||+.. ...+++.+++|++|||||||+|+...+.|+|+||+|+||++||.+++|+.+++
T Consensus 237 ~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~ 309 (587)
T TIGR01480 237 TDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDE 309 (587)
T ss_pred cccccccCccceEEEcCccC-------CCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCe
Confidence 0012377899853 23367899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCC--CCCCchh-h-------
Q 036540 264 ILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLP--APSDTNF-A------- 333 (562)
Q Consensus 264 v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~~-~------- 333 (562)
+.|+|||||||+|++++ +|.|+|.+..... ...+.++|++......+.+.++..| ...+... .
T Consensus 310 l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~ 382 (587)
T TIGR01480 310 FRIAPAETFDVIVEPTG-DDAFTIFAQDSDR------TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDH 382 (587)
T ss_pred EEEcCcceeEEEEecCC-CceEEEEEEecCC------CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccc
Confidence 99999999999999876 5899999875321 2345778887654332222221111 0100000 0
Q ss_pred --ccccc-------------------cc--------------------------cCCCCCC-------------------
Q 036540 334 --LNYSS-------------------KL--------------------------RSLNTPQ------------------- 347 (562)
Q Consensus 334 --~~~~~-------------------~l--------------------------~~l~~~~------------------- 347 (562)
..... .+ ..+..+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~ 462 (587)
T TIGR01480 383 SKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSL 462 (587)
T ss_pred cccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccc
Confidence 00000 00 0000000
Q ss_pred CCCCCCCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccceeeeccccccccCCCCCCCCCcCcCCCCCC
Q 036540 348 YPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPL 427 (562)
Q Consensus 348 ~p~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 427 (562)
.+...+..+++++.+.+.- +-..+.|++||+.|.
T Consensus 463 ~~~~~~~~p~r~~~~~L~g---------~m~~~~wtiNG~~~~------------------------------------- 496 (587)
T TIGR01480 463 FPPPDGRAPGREIELHLTG---------NMERFAWSFDGEAFG------------------------------------- 496 (587)
T ss_pred ccccCcCCCCceEEEEEcC---------CCceeEEEECCccCC-------------------------------------
Confidence 0000001122222221110 001233555543321
Q ss_pred CCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCC
Q 036540 428 TANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTG 507 (562)
Q Consensus 428 ~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~ 507 (562)
....+.++.|++|+|.|.|.+ .+.||||+||+.|+++..+ |. .+.++||+.|+|+
T Consensus 497 --------~~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg 551 (587)
T TIGR01480 497 --------LKTPLRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPG 551 (587)
T ss_pred --------CCCceEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCC
Confidence 012356889999999999976 7799999999999998653 11 2457899999999
Q ss_pred CEEEEEEEecCceeEEEEeehhHhHhccceEEEEEe
Q 036540 508 GWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 508 g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
+.+.++|.+|+||.|+||||++.|++.|||..+.|.
T Consensus 552 ~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 552 GKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.3e-75 Score=619.81 Aligned_cols=423 Identities=21% Similarity=0.273 Sum_probs=297.8
Q ss_pred eEEEEEEEEEEEeecCCce-eeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccc
Q 036540 30 VKKYQFDVQVKNVSRLCNS-KPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCP 108 (562)
Q Consensus 30 ~~~~~l~~~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~ 108 (562)
...|+|++++..+++++.. ..+|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 4469999999999987644 56999999999999999999999999999999999999999999876 99987 899
Q ss_pred cCCCCeEEEEEEeCCCCCceEEecCch----hhc-ccceeEEEEcCCCCCCCCCCC--CCcceEEEEeeccccCHHHHHH
Q 036540 109 IKTGNSYTYDFNVTGQRGTLWWHAHIL----WLR-ATVYGAIVIMPKERTSFPFPQ--PYQETNIILGEWWNSDVETIVN 181 (562)
Q Consensus 109 i~pG~~~~y~~~~~~~~Gt~wyH~h~~----~~~-~Gl~G~iiV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 181 (562)
|.||++++|+|++++++||||||+|.+ .|. +||+|+|||+++.+...+++. ..+|++++++||+.+....+..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 999999999999965689999999974 444 899999999998765444433 2458999999998765443211
Q ss_pred hcc-cCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEE-cCcceEEEEeCCCcc-Cc
Q 036540 182 QGN-KLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAI-AGHNMTVVEIDAVYT-KP 258 (562)
Q Consensus 182 ~~~-~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p 258 (562)
... ........++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||.||.++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 111 0111224568999999987 556775 679999999999999999998 799999999999987 89
Q ss_pred eEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCC-CCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCchhhcccc
Q 036540 259 FTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAP-IPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYS 337 (562)
Q Consensus 259 ~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 337 (562)
+.+++|.|+|||||||+|++++ .+.|.+......... ..........++++.......... +|.
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~P~----------- 333 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGT---LPD----------- 333 (523)
T ss_pred cEeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCc---CCh-----------
Confidence 9999999999999999999987 588998875432110 000011134556665432211111 111
Q ss_pred ccccCCCCCCCCCCCCCCcceEEEEEeccCCCC----CCCCCCC-----c--------------------------e-e-
Q 036540 338 SKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNP----CPSCQNG-----T--------------------------Q-L- 380 (562)
Q Consensus 338 ~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~----~~~~~~g-----~--------------------------~-~- 380 (562)
.++.+... +. ......+++.+.+...... ....+.+ . + +
T Consensus 334 -~l~~~~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (523)
T PRK10965 334 -SLASLPAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFD 409 (523)
T ss_pred -hhccCCCC--Cc-ccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 11111100 00 0011123343332110000 0000000 0 0 0
Q ss_pred ---EEeecccccccCccccceeeeccccccccCCCCCCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCC
Q 036540 381 ---TASLNNITFVMPKIGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNL 457 (562)
Q Consensus 381 ---~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~ 457 (562)
.|+|||++|. .......++.|++++|+|.|.+
T Consensus 410 ~~~~~~ING~~~~--------------------------------------------~~~~~~~~~~G~~e~w~i~N~~- 444 (523)
T PRK10965 410 FHHANKINGKAFD--------------------------------------------MNKPMFAAKKGQYERWVISGVG- 444 (523)
T ss_pred ccccccCCCeECC--------------------------------------------CCCcceecCCCCEEEEEEEeCC-
Confidence 0122222221 1123356889999999999975
Q ss_pred CCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec----CceeEEEEeehhHhHh
Q 036540 458 LTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD----NPGVWFMHCHLELHTM 533 (562)
Q Consensus 458 ~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d----npG~w~~HCHil~H~d 533 (562)
..+.|||||||++|+||+++... .....+.|||||.|++ +.+.|+++++ ++|.||||||||+|||
T Consensus 445 -~~~~Hp~HlHg~~F~Vl~~~g~~---------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed 513 (523)
T PRK10965 445 -DMMLHPFHIHGTQFRILSENGKP---------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHED 513 (523)
T ss_pred -CCCccCeEEeCcEEEEEEecCCC---------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhc
Confidence 23589999999999999995221 1223468999999988 6677666654 6779999999999999
Q ss_pred ccceEEEEEe
Q 036540 534 WGLKMAFVVE 543 (562)
Q Consensus 534 ~GM~~~~~V~ 543 (562)
.|||..|.|.
T Consensus 514 ~GMM~~~~V~ 523 (523)
T PRK10965 514 TGMMLGFTVS 523 (523)
T ss_pred cCccceeEeC
Confidence 9999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.7e-74 Score=604.88 Aligned_cols=402 Identities=18% Similarity=0.189 Sum_probs=291.1
Q ss_pred EEEEEEEEEEeecCC-ceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccC
Q 036540 32 KYQFDVQVKNVSRLC-NSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIK 110 (562)
Q Consensus 32 ~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~ 110 (562)
.++|+++....+.++ ....+|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++... .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 379999999988874 6789999999999999999999999999999999999999999999876 467764 7899
Q ss_pred CCCeEEEEEEeCCCCCceEEecCchh----hc-ccceeEEEEcCCCCCCCCCCC--CCcceEEEEeeccccCHHHHHHhc
Q 036540 111 TGNSYTYDFNVTGQRGTLWWHAHILW----LR-ATVYGAIVIMPKERTSFPFPQ--PYQETNIILGEWWNSDVETIVNQG 183 (562)
Q Consensus 111 pG~~~~y~~~~~~~~Gt~wyH~h~~~----~~-~Gl~G~iiV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 183 (562)
||++++|+|++++++||||||+|.++ |. +||+|+|||+++.+.+.+++. ..+|++|+++||..+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998667999999999876 43 899999999998765444432 23499999999987654321111
Q ss_pred ccCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEE-cCcceEEEEeCCCcc-CceEE
Q 036540 184 NKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAI-AGHNMTVVEIDAVYT-KPFTT 261 (562)
Q Consensus 184 ~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~ 261 (562)
........++.++|||+.+ |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||.||+++ +|+.+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111224568999999977 67899875 8999999999999999999 899999999998776 99999
Q ss_pred eEEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCC----CCCCc---ceEEEEEecCCCCCCCCCCCCCCCCCCchhhc
Q 036540 262 QAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPI----PVDNK---TVTAILQYKGIPNTVLPTLPSLPAPSDTNFAL 334 (562)
Q Consensus 262 d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~----~~~~~---~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~ 334 (562)
+.+.|+|||||||+|++++ .+.+.+++........ .+... ....+++.......... ....|.
T Consensus 269 ~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~-------- 338 (471)
T PRK10883 269 KQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLV-TDNLPM-------- 338 (471)
T ss_pred CeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccccCC-CCcCCh--------
Confidence 9999999999999999987 4677776531100000 00000 01122333211100000 000000
Q ss_pred cccccccCCCCCCCCCCCCCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCccccceeeeccccccccCCCCC
Q 036540 335 NYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTDFPD 414 (562)
Q Consensus 335 ~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~~~~ 414 (562)
.+.. +. ..+....+++.+.++.. .|.|||+.|...
T Consensus 339 ----~l~~---~~---~~~~~~~~~~~~~l~~~-------------~~~INg~~~~~~---------------------- 373 (471)
T PRK10883 339 ----RLLP---DE---IMEGSPIRSREISLGDD-------------LPGINGALWDMN---------------------- 373 (471)
T ss_pred ----hhcC---CC---CCCCCCcceEEEEecCC-------------cCccCCcccCCC----------------------
Confidence 0110 00 01112233333333211 256888766321
Q ss_pred CCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCC
Q 036540 415 RPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLV 494 (562)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~ 494 (562)
...+.++.|++++|++.| .+.|||||||+.||||+++... ....
T Consensus 374 ----------------------~~~~~~~~g~~e~W~~~n-----~~~HP~HlHg~~FqVl~~~G~~---------~~~~ 417 (471)
T PRK10883 374 ----------------------RIDVTAQQGTWERWTVRA-----DMPQAFHIEGVMFLIRNVNGAM---------PFPE 417 (471)
T ss_pred ----------------------cceeecCCCCEEEEEEEC-----CCCcCEeECCccEEEEEecCCC---------CCcc
Confidence 011356799999999988 3589999999999999995321 1112
Q ss_pred CCCccceeeecCCCEEEEEEEecCce----eEEEEeehhHhHhccceEEEEEec
Q 036540 495 DPPERNTVGVPTGGWTAIRFRADNPG----VWFMHCHLELHTMWGLKMAFVVEN 544 (562)
Q Consensus 495 ~p~~rDTv~vpp~g~~~irf~~dnpG----~w~~HCHil~H~d~GM~~~~~V~~ 544 (562)
...|||||.|+ +.+.|+++++++| .||||||||+|||.|||..|.|.+
T Consensus 418 ~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 418 DRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 34799999996 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-60 Score=502.45 Aligned_cols=438 Identities=26% Similarity=0.366 Sum_probs=303.9
Q ss_pred hHHHHHHHHHHHHhhhccCc-----ccCc--eEEEEEEEEEEE-eecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEe
Q 036540 6 RRHLVLLLTIFYFLGFLSFP-----ADAA--VKKYQFDVQVKN-VSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTN 77 (562)
Q Consensus 6 ~r~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~-~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N 77 (562)
||++|+++++.+++.++..+ .... .....+...... ...++.....|.|||++|||+||+++||+|+|+++|
T Consensus 1 rr~fl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N 80 (451)
T COG2132 1 RRQFLKGSAALGVAGALTLPIPPLLLTRAGGMARTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTN 80 (451)
T ss_pred CcHHHHHHHHHHHHHhccccCCccccccccccCceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEe
Confidence 78999876655555444332 1111 113333333333 334567788999999999999999999999999999
Q ss_pred CCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCCCCC
Q 036540 78 HAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERTSFP 156 (562)
Q Consensus 78 ~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~~~~ 156 (562)
.+.+.+++||||+.++.. +||++..+++++.||++++|.|+. +.+||||||+|.++|. +||+|++||++..+.+..
T Consensus 81 ~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~ 157 (451)
T COG2132 81 RLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLG 157 (451)
T ss_pred CCCCCceEEEcCcccCcc--ccCCCcccccCCCCCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCCC
Confidence 998879999999888855 999999999999999999999998 6677999999999998 999999999999776653
Q ss_pred CCCCCcceEEEEeeccccCHHHHHHhcccCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCe
Q 036540 157 FPQPYQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDE 236 (562)
Q Consensus 157 ~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~ 236 (562)
.|.+..++..+|+.......... ........++..+|||+.+ + +...++++|||||+|+++.+.
T Consensus 158 ---~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~~----------p-~~~~~~g~~rlRl~n~~~~~~ 221 (451)
T COG2132 158 ---VDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAIL----------P-FKAVPGGVVRLRLLNAGNART 221 (451)
T ss_pred ---CCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCCcc----------c-eeecCCCeEEEEEEecCCceE
Confidence 47777888888876655443332 1111234468899999765 3 444455679999999998888
Q ss_pred EEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCC
Q 036540 237 LFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNT 316 (562)
Q Consensus 237 ~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~ 316 (562)
+.+++.+++++||+.||.+++|..+|.+.|+||||+||++++++ .+.+.+.+.. .+.. ....+..........
T Consensus 222 ~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~-~~~~-----~~~~~~~~~~~~~~~ 294 (451)
T COG2132 222 YHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALG-EDMP-----DTLKGFRAPNPILTP 294 (451)
T ss_pred EEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEecc-ccCC-----ceeeeeecccccccc
Confidence 99999999999999999999889999999999999999999998 6899999864 1110 011112111111110
Q ss_pred CCCCCCC---CCCCCCchhhccccccccCCCCCCCCCCCCCCcceEEEEEeccCCCCCCCCCCCceeEEeecccccccCc
Q 036540 317 VLPTLPS---LPAPSDTNFALNYSSKLRSLNTPQYPANVPLRVDRHLFYTIGLGQNPCPSCQNGTQLTASLNNITFVMPK 393 (562)
Q Consensus 317 ~~~~~p~---~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~~~~~p~ 393 (562)
+.+.... .+. .+. ... ....+........-+ ..+..+.+... -....|.+|++.|.
T Consensus 295 ~~~~~~~~~~~~~-~d~-~~~----~~~~~~~~~~~~~~~-~~~~~~~l~~~-----------~~~~~~~~n~~~~~--- 353 (451)
T COG2132 295 SYPVLNGRVGAPT-GDM-ADH----APVGLLVTILVEPGP-NRDTDFHLIGG-----------IGGYVWAINGKAFD--- 353 (451)
T ss_pred ccccccccccCCC-cch-hhc----cccccchhhcCCCcc-cccccchhhcc-----------cccccccccCccCC---
Confidence 0000000 000 000 000 000000000000000 00000000000 00112333332221
Q ss_pred cccceeeeccccccccCCCCCCCCCcCcCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeE
Q 036540 394 IGLLQAHYFNISGVFRTDFPDRPPVPFNYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFF 473 (562)
Q Consensus 394 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~ 473 (562)
.+...+.++.|++++|+|.|.+ .+.||||+||+.|+
T Consensus 354 -----------------------------------------~~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~ 389 (451)
T COG2132 354 -----------------------------------------DNRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQ 389 (451)
T ss_pred -----------------------------------------CCcCceeecCCCEEEEEEECCC---CCccCeEEcCceEE
Confidence 1134467889999999999976 58999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCceeEEEEeehhHhHhccceEEEEEec
Q 036540 474 VVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVEN 544 (562)
Q Consensus 474 vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~ 544 (562)
|++.+ .......+.||||+.+.+++.++|+|.+++||.|+|||||++|++.|||..+.|..
T Consensus 390 v~~~~----------~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 390 VLSGD----------APAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred EEecC----------CCcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 99986 12223567899999999999999999999999999999999999999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=3.3e-47 Score=379.46 Aligned_cols=265 Identities=20% Similarity=0.248 Sum_probs=216.4
Q ss_pred ccCceEEEEEEEEEEEeec-CCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCC--CCceEEecCccccCCCCCCCCC
Q 036540 26 ADAAVKKYQFDVQVKNVSR-LCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ--YNMSIHWHGLKQYRNGWADGPA 102 (562)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~--~~~siH~HG~~~~~~~~~DGv~ 102 (562)
+...+++|+|+++..+++. +|....+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCC
Confidence 5678899999999999884 699999999999999999999999999999999985 58899999963 378887
Q ss_pred cccccccCCCCeEEEEEEeCCCCCceEEecCchh----hc-ccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHH
Q 036540 103 YITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILW----LR-ATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVE 177 (562)
Q Consensus 103 ~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~----~~-~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~ 177 (562)
.+++ |.||++++|+|.+ +++||||||||.++ +. +||+|+|||+++...+ ..|+|++++++||+.+...
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEeccccc
Confidence 7776 9999999999998 78999999999653 44 8999999999875322 4588999999999886432
Q ss_pred HHHHhcccC-C-CCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCc
Q 036540 178 TIVNQGNKL-G-LPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVY 255 (562)
Q Consensus 178 ~~~~~~~~~-g-~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~ 255 (562)
......... + .....++.++|||+.+++. +.+++++|+++||||+|++..+.+.||++|+.+++|+.||.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~-------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~ 243 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGALT-------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKF 243 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCCC-------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcc
Confidence 211000000 0 0113458899999965321 457899999999999999988999999999999999999999
Q ss_pred cCce--EEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCC
Q 036540 256 TKPF--TTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIP 314 (562)
Q Consensus 256 ~~p~--~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 314 (562)
+.+. .++++.|+||||+||+|++++ ||.|+++|+.+... .+....++++|.+..
T Consensus 244 ~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~----~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 244 ANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEA----FEKGAAAQVKVEGAW 299 (311)
T ss_pred cCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHH----HhCCCEEEEEECCCC
Confidence 9653 489999999999999999998 79999999865332 133468999997654
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=3e-35 Score=250.34 Aligned_cols=116 Identities=47% Similarity=0.829 Sum_probs=108.5
Q ss_pred EEEEEEeecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeE
Q 036540 36 DVQVKNVSRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSY 115 (562)
Q Consensus 36 ~~~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~ 115 (562)
+|++..+.++|..+.+|+|||++|||+||+++||+|+|+|+|.++++++|||||+++...+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47888899998889999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCC
Q 036540 116 TYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKE 151 (562)
Q Consensus 116 ~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~ 151 (562)
+|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999965699999999999976 9999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=1.3e-29 Score=225.18 Aligned_cols=107 Identities=45% Similarity=0.803 Sum_probs=94.9
Q ss_pred CCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEE
Q 036540 434 SLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIR 513 (562)
Q Consensus 434 ~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~ir 513 (562)
..+..++.++.|++|||+|.|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45678899999999999999975 67999999999999999987665433 345678889999999999999999999
Q ss_pred EEecCceeEEEEeehhHhHhccceEEEEEec
Q 036540 514 FRADNPGVWFMHCHLELHTMWGLKMAFVVEN 544 (562)
Q Consensus 514 f~~dnpG~w~~HCHil~H~d~GM~~~~~V~~ 544 (562)
|++||||.|+|||||++|+|.|||+++.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=1.1e-26 Score=210.73 Aligned_cols=149 Identities=36% Similarity=0.614 Sum_probs=121.3
Q ss_pred cceEEEEeeccccCHHHHHHhcccCCC----CCCCCCceeECCccCCCCCCC-----CCcceEEEEecCcEEEEEEEecC
Q 036540 162 QETNIILGEWWNSDVETIVNQGNKLGL----PPQTSDAHTINGKSGPLFPCS-----EKHTFAMEVESGKTYLLRIVNAA 232 (562)
Q Consensus 162 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~iNG~~~~~~~~~-----~~~~~~~~v~~G~~~rlRliN~~ 232 (562)
+|++|+++||+++....+..+....+. .+..+++++|||+.+ +.|. ....+.+.+++|++|||||||++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 489999999999888777665444432 256789999999976 4444 24568999999999999999999
Q ss_pred CCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecC
Q 036540 233 LNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKG 312 (562)
Q Consensus 233 ~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~ 312 (562)
+...+.|+|+||+|+|||+||.+++|+.++++.|+|||||||+|++++++|.|+|++................++|+|.+
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999878999999963222222234556799999986
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.74 E-value=9.3e-17 Score=172.46 Aligned_cols=226 Identities=13% Similarity=0.135 Sum_probs=145.5
Q ss_pred EEEcCcCCC--ceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCC
Q 036540 52 VTVNGMFPG--PTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQ 124 (562)
Q Consensus 52 ~~~Ng~~pg--P~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~~~ 124 (562)
+++||+.+. +++.+++|+++|+||+|... ....++..|....... .||.+- +....|.|||+++..+++ ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 789999763 67999999999999999985 4477888887754433 788543 345679999999999987 46
Q ss_pred CCceEEecCchhhcccceeEEEEcCCC-CCCC-CCCCC----CcceEE------------EEe-----ec----------
Q 036540 125 RGTLWWHAHILWLRATVYGAIVIMPKE-RTSF-PFPQP----YQETNI------------ILG-----EW---------- 171 (562)
Q Consensus 125 ~Gt~wyH~h~~~~~~Gl~G~iiV~~~~-~~~~-~~~~~----~~e~~l------------~~~-----d~---------- 171 (562)
.|.|+..+...+. .|...+.+..... ..+. +.... ..+.-. .+. +.
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 7899988765322 2333322322111 1100 01000 000000 000 00
Q ss_pred ccc----------------------------------------CHHHHH--Hhcc---------cCCC-------CCCCC
Q 036540 172 WNS----------------------------------------DVETIV--NQGN---------KLGL-------PPQTS 193 (562)
Q Consensus 172 ~~~----------------------------------------~~~~~~--~~~~---------~~g~-------~~~~~ 193 (562)
.+. ...... .... ..+. .....
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 000000 0000 0000 00011
Q ss_pred CceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEE
Q 036540 194 DAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTN 273 (562)
Q Consensus 194 ~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~d 273 (562)
..|+|||+.++ ..+.+.++.||+|||||+|.+ ...|+||+|||.|.++..||.+ +...|++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t-~~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDT-MMAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCC-CCCcceeEcCceeeeecCCCcc--cccCCceeeCCCCEEE
Confidence 24899999863 224688999999999999988 7899999999999999888863 3345889999999999
Q ss_pred EEEEeCCCCCeEEEEEee
Q 036540 274 VLVKADQSPSRYFMAARP 291 (562)
Q Consensus 274 v~v~~~~~~G~~~i~~~~ 291 (562)
+.|++++ ||.|++|||.
T Consensus 556 ~~f~ad~-pG~w~~HCH~ 572 (587)
T TIGR01480 556 FRVTADA-LGRWAYHCHM 572 (587)
T ss_pred EEEECCC-CeEEEEcCCC
Confidence 9999998 7999999995
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.73 E-value=5.1e-17 Score=143.54 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCC---CCceEEecCccccCCCCCCCCCcccccccCCC----Ce--E
Q 036540 45 LCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ---YNMSIHWHGLKQYRNGWADGPAYITQCPIKTG----NS--Y 115 (562)
Q Consensus 45 ~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~---~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG----~~--~ 115 (562)
.+.....+.++|. ++|+|++++||+|+++|+|.+. ....||+||......+-+||++.++++++.|+ +. .
T Consensus 37 ~~~~~~~f~~~~~-~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHDL-KNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecCC-CCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 3566677888895 5899999999999999999964 34667777776544444899999999998884 11 3
Q ss_pred EEEEEeCCCCCceEEecCchhhc-ccceeEEEEc
Q 036540 116 TYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIM 148 (562)
Q Consensus 116 ~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~ 148 (562)
+++|+. .++||||||||..+++ +||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 455655 5899999999999888 7999999995
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.72 E-value=2.3e-15 Score=150.68 Aligned_cols=236 Identities=17% Similarity=0.131 Sum_probs=151.8
Q ss_pred CceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCC-CCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceE
Q 036540 194 DAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAAL-NDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTT 272 (562)
Q Consensus 194 ~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~-~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~ 272 (562)
+.+++||+. ..|.+++++|++++++|.|... ...|.+|+|++. +.||.. + ...|.||+++
T Consensus 48 ~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~--~----~~~I~PG~t~ 108 (311)
T TIGR02376 48 QAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGA--A----LTQVNPGETA 108 (311)
T ss_pred EEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCC--c----ceeECCCCeE
Confidence 578999984 2389999999999999999863 358899999874 457652 1 2238999999
Q ss_pred EEEEEeCCCCCeEEEEEeecCCCCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCchhhccccccccCCCCCCCCCCC
Q 036540 273 NVLVKADQSPSRYFMAARPFMDAPIPVDNKTVTAILQYKGIPNTVLPTLPSLPAPSDTNFALNYSSKLRSLNTPQYPANV 352 (562)
Q Consensus 273 dv~v~~~~~~G~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~ 352 (562)
.+.+++++ +|.||+|||..... ......+..+.|....... .+
T Consensus 109 ty~F~~~~-~Gty~YH~H~~~~~-~~q~~~Gl~G~liV~~~~~--------~~--------------------------- 151 (311)
T TIGR02376 109 TLRFKATR-PGAFVYHCAPPGMV-PWHVVSGMNGAIMVLPREG--------LP--------------------------- 151 (311)
T ss_pred EEEEEcCC-CEEEEEEcCCCCch-hHHhhcCcceEEEeeccCC--------Cc---------------------------
Confidence 99999987 79999999953210 0001123345555442111 00
Q ss_pred CCCcceEEEEEeccCCCCCC-----C-------CCCCceeEEeecccccccCccccceeeeccccccccCCCCCCCCCcC
Q 036540 353 PLRVDRHLFYTIGLGQNPCP-----S-------CQNGTQLTASLNNITFVMPKIGLLQAHYFNISGVFRTDFPDRPPVPF 420 (562)
Q Consensus 353 p~~~~~~~~~~~~~~~~~~~-----~-------~~~g~~~~~~~n~~~~~~p~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 420 (562)
..|+.+.+.++-...... . ...+..-...+||+...
T Consensus 152 --~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~------------------------------ 199 (311)
T TIGR02376 152 --EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGA------------------------------ 199 (311)
T ss_pred --CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCC------------------------------
Confidence 011111111100000000 0 00000001223332110
Q ss_pred cCCCCCCCCCcCCCCceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCC--c
Q 036540 421 NYTGAPLTANLGTSLGTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPP--E 498 (562)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~--~ 498 (562)
..+...++.|++++|.|.|.+ ....+.||++|++|.++... |.+ ..+. .
T Consensus 200 ---------------~~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~D-G~~-----------~~~~~~~ 250 (311)
T TIGR02376 200 ---------------LTGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVT-GKF-----------ANPPNRD 250 (311)
T ss_pred ---------------CCCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEEC-Ccc-----------cCCCCCC
Confidence 001135678999999999976 34679999999999999884 221 1222 3
Q ss_pred cceeeecCCCEEEEEEEecCceeEEEEeehhHhH-hccceEEEEEecCC
Q 036540 499 RNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHT-MWGLKMAFVVENGK 546 (562)
Q Consensus 499 rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~-d~GM~~~~~V~~~~ 546 (562)
.|++.|.|+....|.++++.||.|++|||...|+ ..||++.+.|+...
T Consensus 251 ~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 251 VETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred cceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 6899999999999999999999999999999998 77999999886543
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.59 E-value=1.5e-13 Score=146.77 Aligned_cols=233 Identities=14% Similarity=0.145 Sum_probs=142.9
Q ss_pred eeeEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceEEe-cCccccCCCCCCCCCc-----ccccccCCCCeEEEEEE
Q 036540 48 SKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-YNMSIHW-HGLKQYRNGWADGPAY-----ITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 48 ~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~siH~-HG~~~~~~~~~DGv~~-----~t~~~i~pG~~~~y~~~ 120 (562)
....+++||+. .|.+.++ |.++|+|+.|... ....+.+ .|....... .||.+. +....|.|||+++..++
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvlv~ 287 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVLVD 287 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEEEE
Confidence 34678999996 6888885 6699999999985 5556766 454322222 788432 34466999999999998
Q ss_pred eCCCCCceEEecCchhhcccc--------eeEEEEcC--CC-CCCCC-----CCC-------CCcceEEEEeecccc---
Q 036540 121 VTGQRGTLWWHAHILWLRATV--------YGAIVIMP--KE-RTSFP-----FPQ-------PYQETNIILGEWWNS--- 174 (562)
Q Consensus 121 ~~~~~Gt~wyH~h~~~~~~Gl--------~G~iiV~~--~~-~~~~~-----~~~-------~~~e~~l~~~d~~~~--- 174 (562)
. .+.|.++...-.... .|+ +-.+.+.. .. ....| .+. ..+.+.+.+..+...
T Consensus 288 ~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m 365 (523)
T PRK10965 288 T-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGM 365 (523)
T ss_pred c-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhh
Confidence 7 456777666532111 111 11222321 11 00000 000 011223322211000
Q ss_pred ------CHHHHHHh--------cccCC-----------CCC-C-CCCceeECCccCCCCCCCCCcceEEEEecCcEEEEE
Q 036540 175 ------DVETIVNQ--------GNKLG-----------LPP-Q-TSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLR 227 (562)
Q Consensus 175 ------~~~~~~~~--------~~~~g-----------~~~-~-~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlR 227 (562)
........ ....| +.+ . ....++|||+.+. ...+.++++.|++++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~------~~~~~~~~~~G~~e~w~ 439 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD------MNKPMFAAKKGQYERWV 439 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC------CCCcceecCCCCEEEEE
Confidence 00000000 00000 000 0 0012489999863 13366899999999999
Q ss_pred EEecCCCCeEEEEEcCcceEEEEeCCCccC---ceEEeEEEeCCCceEEEEEEeCC---CCCeEEEEEeec
Q 036540 228 IVNAALNDELFFAIAGHNMTVVEIDAVYTK---PFTTQAILIAPGQTTNVLVKADQ---SPSRYFMAARPF 292 (562)
Q Consensus 228 liN~~~~~~~~~~l~gh~~~via~DG~~~~---p~~~d~v~l~pgeR~dv~v~~~~---~~G~~~i~~~~~ 292 (562)
|+|.+....|+|||||+.|+|++.||.+.. +.++|||.+.+ ++++++++++. .+|.|.+|||-.
T Consensus 440 i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 440 ISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 999996678999999999999999999764 46799999977 88999999984 357999999964
No 25
>PLN02835 oxidoreductase
Probab=99.53 E-value=4.5e-13 Score=143.54 Aligned_cols=239 Identities=14% Similarity=0.100 Sum_probs=148.5
Q ss_pred eeEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCC
Q 036540 49 KPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTG 123 (562)
Q Consensus 49 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~~ 123 (562)
...+++||+. .++++|++|+++|+|+.|... ....+|..|....... .||.+. +....|.||||++..+++++
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4679999997 489999999999999999985 4678888887765433 788643 23456999999999999866
Q ss_pred CCCceEEecCchhhc--ccceeEEEEcCCCC-CCCCCCC---CCc--------ceEEEEeeccccCH-H-HH-H-----H
Q 036540 124 QRGTLWWHAHILWLR--ATVYGAIVIMPKER-TSFPFPQ---PYQ--------ETNIILGEWWNSDV-E-TI-V-----N 181 (562)
Q Consensus 124 ~~Gt~wyH~h~~~~~--~Gl~G~iiV~~~~~-~~~~~~~---~~~--------e~~l~~~d~~~~~~-~-~~-~-----~ 181 (562)
.+|.||...-..... ....+.+.-+.... ...+.+. .+. .....+........ . .. . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 689999986321111 11223333322111 0001110 000 00000000000000 0 00 0 0
Q ss_pred hcc-cCCCCCC--CCCceeECCccCCCC---------------CCCC------------CcceEEEEecCcEEEEEEEec
Q 036540 182 QGN-KLGLPPQ--TSDAHTINGKSGPLF---------------PCSE------------KHTFAMEVESGKTYLLRIVNA 231 (562)
Q Consensus 182 ~~~-~~g~~~~--~~~~~~iNG~~~~~~---------------~~~~------------~~~~~~~v~~G~~~rlRliN~ 231 (562)
... ....... ....+.+||..+... -|.. ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 0000000 012467888876310 0100 012346778899999999998
Q ss_pred CCCCeEEEEEcCcceEEEEe-CCCc----------cCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 232 ALNDELFFAIAGHNMTVVEI-DAVY----------TKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 232 ~~~~~~~~~l~gh~~~via~-DG~~----------~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
+ ...|+||||||.|+|++. +|.+ ..|...||+.+.++..+.|.|++++ ||.|.||||.
T Consensus 429 ~-~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN-PG~Wl~HCHi 497 (539)
T PLN02835 429 E-KTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN-QGMWNMRSAI 497 (539)
T ss_pred C-CCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC-CEEeeeeecc
Confidence 7 568999999999999987 5522 2489999999999999999999999 8999999995
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.52 E-value=1.3e-12 Score=141.27 Aligned_cols=240 Identities=15% Similarity=0.124 Sum_probs=145.4
Q ss_pred eEEEEcCcC-C--------CceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeE
Q 036540 50 PIVTVNGMF-P--------GPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSY 115 (562)
Q Consensus 50 ~~~~~Ng~~-p--------gP~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~ 115 (562)
..+++||+. + .++|.|++|+++|+||+|... ....+|.+|....... .||.+- +....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 679999984 1 148999999999999999974 4567888887654433 788642 234669999999
Q ss_pred EEEEEeCCCCCceEEecCchhh-----c-ccceeEEEEcCCCCCCCCCCC--C-Ccce-----------EEEEee--ccc
Q 036540 116 TYDFNVTGQRGTLWWHAHILWL-----R-ATVYGAIVIMPKERTSFPFPQ--P-YQET-----------NIILGE--WWN 173 (562)
Q Consensus 116 ~y~~~~~~~~Gt~wyH~h~~~~-----~-~Gl~G~iiV~~~~~~~~~~~~--~-~~e~-----------~l~~~d--~~~ 173 (562)
+..+++++.+|.||.+.+.... . ....+.|...+......+... . ..+. .+.... ...
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999985558999999874211 1 112233333332211111000 0 0000 000000 000
Q ss_pred -cCHHH-HHHhccc---CCC-----C-CCCCCceeECCccCCC---------------------------CCCC-CC---
Q 036540 174 -SDVET-IVNQGNK---LGL-----P-PQTSDAHTINGKSGPL---------------------------FPCS-EK--- 211 (562)
Q Consensus 174 -~~~~~-~~~~~~~---~g~-----~-~~~~~~~~iNG~~~~~---------------------------~~~~-~~--- 211 (562)
..... ....... ... . ....-.++|||..+.. ..|. ..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000 000 0 0001135678875310 0010 00
Q ss_pred -------cceEEEEecCcEEEEEEEecCC--CCeEEEEEcCcceEEEEeC-CCc-----------cCceEEeEEEeCCCc
Q 036540 212 -------HTFAMEVESGKTYLLRIVNAAL--NDELFFAIAGHNMTVVEID-AVY-----------TKPFTTQAILIAPGQ 270 (562)
Q Consensus 212 -------~~~~~~v~~G~~~rlRliN~~~--~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pge 270 (562)
....+.++.|+++++.|.|.+. ...|+||||||.|+|++.. |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1235788999999999999862 3489999999999999886 321 147789999999999
Q ss_pred eEEEEEEeCCCCCeEEEEEee
Q 036540 271 TTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 271 R~dv~v~~~~~~G~~~i~~~~ 291 (562)
.+-|.+++++ ||.|.||||-
T Consensus 486 ~vvirf~adN-PG~W~~HCHi 505 (539)
T TIGR03389 486 WAAIRFVADN-PGVWFMHCHL 505 (539)
T ss_pred eEEEEEecCC-CeEEEEEecc
Confidence 9999999998 8999999995
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.52 E-value=8.8e-13 Score=139.54 Aligned_cols=221 Identities=13% Similarity=0.133 Sum_probs=136.0
Q ss_pred ceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCC-CCceEEe-cCccccCCCCCCCCCc-----ccccccCCCCeEEEEE
Q 036540 47 NSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQ-YNMSIHW-HGLKQYRNGWADGPAY-----ITQCPIKTGNSYTYDF 119 (562)
Q Consensus 47 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~-~~~siH~-HG~~~~~~~~~DGv~~-----~t~~~i~pG~~~~y~~ 119 (562)
.....+++||+. .|.|.|+.| ++|+|+.|... ....+++ +|....... .||-.. +++..|.|||+++.-+
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345779999996 699999875 89999999985 5567887 565432222 785222 3456799999999999
Q ss_pred EeCCCCCceEEecCchh-hccccee------------EEEEcCCCCCCCCCCCCCcceEEEEee--ccccCHHHHHHhcc
Q 036540 120 NVTGQRGTLWWHAHILW-LRATVYG------------AIVIMPKERTSFPFPQPYQETNIILGE--WWNSDVETIVNQGN 184 (562)
Q Consensus 120 ~~~~~~Gt~wyH~h~~~-~~~Gl~G------------~iiV~~~~~~~~~~~~~~~e~~l~~~d--~~~~~~~~~~~~~~ 184 (562)
++ .+.+.+.+++-... ....+.+ .+-++...... .. ....+..+.. ......... .. .
T Consensus 284 d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~-~~-~ 356 (471)
T PRK10883 284 DM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRS-RE-I 356 (471)
T ss_pred EC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcce-EE-E
Confidence 97 55566766653211 0011111 11111111000 00 0000000000 000000000 00 0
Q ss_pred cCCCCCCCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCc---eEE
Q 036540 185 KLGLPPQTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKP---FTT 261 (562)
Q Consensus 185 ~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p---~~~ 261 (562)
..+ .+.++|||+.+.. ..+.++++.|++++|+|.|. ..|+||||+|.|+|++.||....+ .+.
T Consensus 357 ~l~-----~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~gwk 422 (471)
T PRK10883 357 SLG-----DDLPGINGALWDM------NRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDRGWK 422 (471)
T ss_pred Eec-----CCcCccCCcccCC------CcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccccCcC
Confidence 001 1234799998731 22457899999999999886 479999999999999999986543 468
Q ss_pred eEEEeCCCceEEEEEEeCCCCC---eEEEEEeecC
Q 036540 262 QAILIAPGQTTNVLVKADQSPS---RYFMAARPFM 293 (562)
Q Consensus 262 d~v~l~pgeR~dv~v~~~~~~G---~~~i~~~~~~ 293 (562)
|||.+. +++.|+++++...| .|.+|||-..
T Consensus 423 DTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLe 455 (471)
T PRK10883 423 DTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLE 455 (471)
T ss_pred cEEEcC--CeEEEEEEecCCCCCCCcEEeeccccc
Confidence 999994 57999999998433 7999999653
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.44 E-value=1.1e-12 Score=111.75 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=83.1
Q ss_pred HhhhccCcccCceEEEEEEEE--EEEe---ecCCceeeEE-EEcCcCCCceEEEecCCEEEEEEEeCCCCCc--eEEecC
Q 036540 18 FLGFLSFPADAAVKKYQFDVQ--VKNV---SRLCNSKPIV-TVNGMFPGPTIYIREGDRVLINVTNHAQYNM--SIHWHG 89 (562)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~--siH~HG 89 (562)
++..+...+.+..++|+++|+ ...+ +..|+....+ ++|+++..+.|+|++||+|++++.|..+.++ .++++|
T Consensus 12 ~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g 91 (135)
T TIGR03096 12 LGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYG 91 (135)
T ss_pred HHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCC
Confidence 334455668888999999999 6665 3467776666 9999999899999999999999999987554 333332
Q ss_pred ccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhc
Q 036540 90 LKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR 138 (562)
Q Consensus 90 ~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~ 138 (562)
+ +..|+||++.+|+|.+ +++|+|||||..+...
T Consensus 92 i---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 92 I---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred c---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 1 2468999999999997 8999999999887544
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.39 E-value=1e-11 Score=131.96 Aligned_cols=233 Identities=18% Similarity=0.148 Sum_probs=148.6
Q ss_pred CceeeEEEEcCcCCCceEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCCC----cccccccCCCCeEEEEEE
Q 036540 46 CNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHA-QYNMSIHWHGLKQYRNGWADGPA----YITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 46 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DGv~----~~t~~~i~pG~~~~y~~~ 120 (562)
|..++...+||+.. | +.+.++..+|+|+.|.. .....+++.|.+..... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~~-p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAIL-P-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCcc-c-eeecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 56677788899552 4 45555666999999998 66677777766654433 67755 456678999999999988
Q ss_pred eCCCCCceEEecCchhhcccceeEEEEcCCCCCCCCC-------CCCC---cceEEEEeeccccCHHHHHHhcccCCCCC
Q 036540 121 VTGQRGTLWWHAHILWLRATVYGAIVIMPKERTSFPF-------PQPY---QETNIILGEWWNSDVETIVNQGNKLGLPP 190 (562)
Q Consensus 121 ~~~~~Gt~wyH~h~~~~~~Gl~G~iiV~~~~~~~~~~-------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 190 (562)
. ...|++-+.+......+-+.+..-.........+. +..+ ............+........... ...
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHL--IGG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchh--hcc
Confidence 7 44788888887622112222222211111000000 0001 111111111111110000000000 001
Q ss_pred CCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCcc--CceEEeEEEeCC
Q 036540 191 QTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYT--KPFTTQAILIAP 268 (562)
Q Consensus 191 ~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~--~p~~~d~v~l~p 268 (562)
.....+.+||+.++. ....+.++.|+++||+|.|-+. ..|+||+||+.|+|++.|.... .+.++|++.+.|
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 112458888887632 2467899999999999999995 9999999999999999982221 467899999999
Q ss_pred CceEEEEEEeCCCCCeEEEEEeec
Q 036540 269 GQTTNVLVKADQSPSRYFMAARPF 292 (562)
Q Consensus 269 geR~dv~v~~~~~~G~~~i~~~~~ 292 (562)
++++.+.++++. +|.|++|||..
T Consensus 413 ~~~~~v~~~a~~-~g~~~~HCH~l 435 (451)
T COG2132 413 GERLLVRFDADY-PGPWMFHCHIL 435 (451)
T ss_pred CeEEEEEEeCCC-CCceEEeccch
Confidence 999999999998 68999999964
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.36 E-value=8.2e-11 Score=125.94 Aligned_cols=240 Identities=16% Similarity=0.160 Sum_probs=144.5
Q ss_pred eeEEEEcCcCC-CceEEEecCCEEEEEEEeCCCC-CceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeC
Q 036540 49 KPIVTVNGMFP-GPTIYIREGDRVLINVTNHAQY-NMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVT 122 (562)
Q Consensus 49 ~~~~~~Ng~~p-gP~i~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~ 122 (562)
...+++||+.+ .|+|.+++|+++|+|+.|.... ...++..|....... .||.+- +.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 46789999852 4899999999999999999754 567777777654433 788432 3456799999999999984
Q ss_pred CCC-C---ceEEecCchhhccccee-EEEEcCCCCCC--CCCC---CC-Cc----ceEEEEe-ecc----ccCHH--H-H
Q 036540 123 GQR-G---TLWWHAHILWLRATVYG-AIVIMPKERTS--FPFP---QP-YQ----ETNIILG-EWW----NSDVE--T-I 179 (562)
Q Consensus 123 ~~~-G---t~wyH~h~~~~~~Gl~G-~iiV~~~~~~~--~~~~---~~-~~----e~~l~~~-d~~----~~~~~--~-~ 179 (562)
+++ | .||...-.......+.+ +++..+..... .+.+ .. +. +....+. ... ..... . .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 343 4 79988654211111112 33333222110 1111 00 00 1000000 000 00000 0 0
Q ss_pred ----HHhcc-cCCCC--CCCCCceeECCccCCC----------CC---C--CC------------CcceEEEEecCcEEE
Q 036540 180 ----VNQGN-KLGLP--PQTSDAHTINGKSGPL----------FP---C--SE------------KHTFAMEVESGKTYL 225 (562)
Q Consensus 180 ----~~~~~-~~g~~--~~~~~~~~iNG~~~~~----------~~---~--~~------------~~~~~~~v~~G~~~r 225 (562)
..... ..... ......++|||..+.. +. . ++ ...-.+.++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00000 00000 0001246788887631 00 0 00 012347888999999
Q ss_pred EEEEecCCCCeEEEEEcCcceEEEEe-----CC------CccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 226 LRIVNAALNDELFFAIAGHNMTVVEI-----DA------VYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 226 lRliN~~~~~~~~~~l~gh~~~via~-----DG------~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
+=|-|.. ...|+||||||.|+|++. |+ ++..|...|++.+.++.-+-|.+++++ ||.|.||||-
T Consensus 427 iViqn~~-~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPL-FSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN-QGMWNVRSQK 501 (545)
T ss_pred EEEeCCC-CCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC-CeEEeeeecC
Confidence 8888876 569999999999999976 21 224788999999999999999999999 8999999993
No 31
>PLN02354 copper ion binding / oxidoreductase
Probab=99.35 E-value=4.3e-11 Score=128.60 Aligned_cols=240 Identities=11% Similarity=0.108 Sum_probs=146.7
Q ss_pred eeEEEEcCcCC------CceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEE
Q 036540 49 KPIVTVNGMFP------GPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTY 117 (562)
Q Consensus 49 ~~~~~~Ng~~p------gP~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y 117 (562)
...+++||+.. -|+|.|++|++.|+||+|... ....+|..|....... .||++- +....|.||||++.
T Consensus 189 ~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydV 267 (552)
T PLN02354 189 PDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSV 267 (552)
T ss_pred CCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEE
Confidence 35789999841 279999999999999999984 4567888887764433 798642 33456999999999
Q ss_pred EEEeCCCCCceEEecCchhhc--ccceeEEEEcCCCCCC-CCCCCCCcce--EE-EEeeccc-------c--C-HH-H--
Q 036540 118 DFNVTGQRGTLWWHAHILWLR--ATVYGAIVIMPKERTS-FPFPQPYQET--NI-ILGEWWN-------S--D-VE-T-- 178 (562)
Q Consensus 118 ~~~~~~~~Gt~wyH~h~~~~~--~Gl~G~iiV~~~~~~~-~~~~~~~~e~--~l-~~~d~~~-------~--~-~~-~-- 178 (562)
.+++++.+|.||......... ....+.|..+...... ...+...... .. ...+... . . .. .
T Consensus 268 lv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 347 (552)
T PLN02354 268 LVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYG 347 (552)
T ss_pred EEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccc
Confidence 999866689999988742211 1223333333221100 0011000000 00 0000000 0 0 00 0
Q ss_pred -H-HHhc--ccCCCCCCC-CCceeECCccCCCC----------CCC--------------------CCcceEEEEecCcE
Q 036540 179 -I-VNQG--NKLGLPPQT-SDAHTINGKSGPLF----------PCS--------------------EKHTFAMEVESGKT 223 (562)
Q Consensus 179 -~-~~~~--~~~g~~~~~-~~~~~iNG~~~~~~----------~~~--------------------~~~~~~~~v~~G~~ 223 (562)
. .... ......... ...+.|||..+... ... ....-.+.++.|++
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~ 427 (552)
T PLN02354 348 KINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTF 427 (552)
T ss_pred cccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCE
Confidence 0 0000 000000000 12466787764200 000 00123567888999
Q ss_pred EEEEEEecCCCCeEEEEEcCcceEEEEeCC-C----------ccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 224 YLLRIVNAALNDELFFAIAGHNMTVVEIDA-V----------YTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 224 ~rlRliN~~~~~~~~~~l~gh~~~via~DG-~----------~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
+.+-|.|.. ...|+||||||.|+|++..- . ...|...|++.+.++.-.-+.+++++ ||.|.||||-
T Consensus 428 VeiVi~n~~-~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PGvW~~HCHi 504 (552)
T PLN02354 428 VEIIFENHE-KSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN-AGMWNIRSEN 504 (552)
T ss_pred EEEEEeCCC-CCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC-CeEEeeeccc
Confidence 999999975 56899999999999997632 1 13588999999999999999999999 8999999995
No 32
>PLN02991 oxidoreductase
Probab=99.33 E-value=9.9e-11 Score=125.12 Aligned_cols=241 Identities=12% Similarity=0.079 Sum_probs=144.6
Q ss_pred eeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCC-CceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeC
Q 036540 48 SKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQY-NMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVT 122 (562)
Q Consensus 48 ~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~ 122 (562)
.....++||+...+++.|++|+++|+|++|.... ...++..|....... .||.+- +....|.||||++..++++
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 3567999999655899999999999999999854 467777777654433 798642 3456699999999999997
Q ss_pred CCCCceEEecCchhhcccc--eeEEEEcCCCC-CCCCCCC--CCcceEEEEe---ecc-----ccC-HHH------H-HH
Q 036540 123 GQRGTLWWHAHILWLRATV--YGAIVIMPKER-TSFPFPQ--PYQETNIILG---EWW-----NSD-VET------I-VN 181 (562)
Q Consensus 123 ~~~Gt~wyH~h~~~~~~Gl--~G~iiV~~~~~-~~~~~~~--~~~e~~l~~~---d~~-----~~~-~~~------~-~~ 181 (562)
+..|.||.-.-.......+ .+.|--+.... ...+.+. .+.+...-.. +.. ... ... . ..
T Consensus 268 ~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 268 QPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 7788999765431111111 22222222211 0001110 0000000000 000 000 000 0 00
Q ss_pred hcc-cCCCCC--CCCCceeECCccCCCC----------CCC-----------------CCcceEEEEecCcEEEEEEEec
Q 036540 182 QGN-KLGLPP--QTSDAHTINGKSGPLF----------PCS-----------------EKHTFAMEVESGKTYLLRIVNA 231 (562)
Q Consensus 182 ~~~-~~g~~~--~~~~~~~iNG~~~~~~----------~~~-----------------~~~~~~~~v~~G~~~rlRliN~ 231 (562)
... ...... ...-.+.|||..+... ..+ ....-.+.++.|+++.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 000 000000 0012466777765310 000 0112245778889998988887
Q ss_pred CCCCeEEEEEcCcceEEEEeCC-C----------ccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 232 ALNDELFFAIAGHNMTVVEIDA-V----------YTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 232 ~~~~~~~~~l~gh~~~via~DG-~----------~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
. ...|+||||||.|+|++... . +..|...|++.+.++.-+-|.+++++ ||.|.||||-
T Consensus 428 ~-~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~W~~HCHi 496 (543)
T PLN02991 428 E-DIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN-VGMWNLRSEL 496 (543)
T ss_pred C-CCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC-CEEeeeeeCc
Confidence 6 46899999999999998632 1 13588899999999999999999999 8999999995
No 33
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.32 E-value=7.5e-11 Score=127.46 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=134.6
Q ss_pred eEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCC-CceEEecCch
Q 036540 62 TIYIREGDRVLINVTNHA-QYNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQR-GTLWWHAHIL 135 (562)
Q Consensus 62 ~i~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~~~~-Gt~wyH~h~~ 135 (562)
+|.|++|+++|+||+|.. .....++.+|....... .||.+- +....|.||||++..+++++.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999997 45667777776654333 788542 3345699999999999984434 5899986544
Q ss_pred hhc--ccceeEEEEcCCCC-CCCC------CCCCC-c----ceEEE-Eeecccc-CHHHHHHh-c-ccCCCCCCCCCcee
Q 036540 136 WLR--ATVYGAIVIMPKER-TSFP------FPQPY-Q----ETNII-LGEWWNS-DVETIVNQ-G-NKLGLPPQTSDAHT 197 (562)
Q Consensus 136 ~~~--~Gl~G~iiV~~~~~-~~~~------~~~~~-~----e~~l~-~~d~~~~-~~~~~~~~-~-~~~g~~~~~~~~~~ 197 (562)
... .....+++...... ...+ .+..+ . +..+. +...... ........ . ...+........++
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 331 11112444432211 1000 00000 0 00000 0000000 00000000 0 00000000012367
Q ss_pred ECCccCCC-------------------------CCCC-------C-----CcceEEEEecCcEEEEEEEecCC-----CC
Q 036540 198 INGKSGPL-------------------------FPCS-------E-----KHTFAMEVESGKTYLLRIVNAAL-----ND 235 (562)
Q Consensus 198 iNG~~~~~-------------------------~~~~-------~-----~~~~~~~v~~G~~~rlRliN~~~-----~~ 235 (562)
+||..+.. +.|. . ...-++.++.|++|.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 77776520 0000 0 01134788999999999999752 45
Q ss_pred eEEEEEcCcceEEEEeC-CCc-----------cCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 236 ELFFAIAGHNMTVVEID-AVY-----------TKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 236 ~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
.|+||||||.|+|++.. |.+ ..|...|++.+.++.-+-|.+++++ ||.|.||||.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN-PG~W~~HCHi 509 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN-PGVWAFHCHI 509 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC-CeEeeeeccc
Confidence 79999999999999986 432 1478899999999999999999999 8999999995
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.31 E-value=1.4e-10 Score=125.09 Aligned_cols=240 Identities=16% Similarity=0.172 Sum_probs=141.7
Q ss_pred eEEEEcCcC---------------CCceEEEecCCEEEEEEEeCCCC-CceEEecCcc-ccCCCCCCCCCc----ccccc
Q 036540 50 PIVTVNGMF---------------PGPTIYIREGDRVLINVTNHAQY-NMSIHWHGLK-QYRNGWADGPAY----ITQCP 108 (562)
Q Consensus 50 ~~~~~Ng~~---------------pgP~i~v~~Gd~v~i~~~N~l~~-~~siH~HG~~-~~~~~~~DGv~~----~t~~~ 108 (562)
..+++||+. ..|+|+|++|+++|+|+.|.... ...++..|.. ..... .||.+- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 468999983 12789999999999999999854 4567777665 43322 788632 23456
Q ss_pred cCCCCeEEEEEEeCCC-------CCceEEecCchhhcccc--eeEEEEcCCCCCCCC-CCC-----C------CcceEEE
Q 036540 109 IKTGNSYTYDFNVTGQ-------RGTLWWHAHILWLRATV--YGAIVIMPKERTSFP-FPQ-----P------YQETNII 167 (562)
Q Consensus 109 i~pG~~~~y~~~~~~~-------~Gt~wyH~h~~~~~~Gl--~G~iiV~~~~~~~~~-~~~-----~------~~e~~l~ 167 (562)
|.||||++..+++++. +|-||-..-.......+ .+.|.-+.......+ .+. . ..+..+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 9999999999998432 48899775422111112 233333212111111 000 0 0111111
Q ss_pred -Eeeccc---cCHHHHHHhc-ccCCCC--C-CCCCceeECCccCCCC-C--------------C------------CCCc
Q 036540 168 -LGEWWN---SDVETIVNQG-NKLGLP--P-QTSDAHTINGKSGPLF-P--------------C------------SEKH 212 (562)
Q Consensus 168 -~~d~~~---~~~~~~~~~~-~~~g~~--~-~~~~~~~iNG~~~~~~-~--------------~------------~~~~ 212 (562)
+..-.. .......... ...+.. . .....+++||..+..- . . ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 100000 0000000000 000000 0 0113477888765310 0 0 0011
Q ss_pred ceEEEEecCcEEEEEEEecC-------CCCeEEEEEcCcceEEEEe-CCCc-----------cCceEEeEEEeC------
Q 036540 213 TFAMEVESGKTYLLRIVNAA-------LNDELFFAIAGHNMTVVEI-DAVY-----------TKPFTTQAILIA------ 267 (562)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~~-------~~~~~~~~l~gh~~~via~-DG~~-----------~~p~~~d~v~l~------ 267 (562)
.-.+.++.|+++++.|.|.. ....|+||||||.|+|++. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12577899999999999975 2568999999999999985 4532 258899999984
Q ss_pred ----CCceEEEEEEeCCCCCeEEEEEee
Q 036540 268 ----PGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 268 ----pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
++.-+.|.+++++ ||.|.||||-
T Consensus 491 ~~~~~~~~~~ir~~~dN-PG~W~~HCHi 517 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVTN-PGVWMMHCHI 517 (538)
T ss_pred cccCCCceEEEEEEcCC-CeeEEEeccc
Confidence 7888899999998 8999999995
No 35
>PLN02604 oxidoreductase
Probab=99.30 E-value=1.1e-10 Score=126.68 Aligned_cols=227 Identities=14% Similarity=0.133 Sum_probs=134.9
Q ss_pred ceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCCC-ceEEecCc
Q 036540 61 PTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQRG-TLWWHAHI 134 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~~~~G-t~wyH~h~ 134 (562)
++|.+++|+++|+||+|... ....++..|....... .||.+- +....|.||||++..+++++.+| .||-....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 48999999999999999984 4566666666654333 788543 33466999999999999854455 79988543
Q ss_pred hhh---c-ccceeEEEEcCCCC--CCCCCCCC----CcceEEEEeecc---------ccCHHHHHHhc--ccCCCCCCCC
Q 036540 135 LWL---R-ATVYGAIVIMPKER--TSFPFPQP----YQETNIILGEWW---------NSDVETIVNQG--NKLGLPPQTS 193 (562)
Q Consensus 135 ~~~---~-~Gl~G~iiV~~~~~--~~~~~~~~----~~e~~l~~~d~~---------~~~~~~~~~~~--~~~g~~~~~~ 193 (562)
... . .+ . +|+...... ...+.... ..+....+.... ........... ..........
T Consensus 303 ~~~~~~~~~~-~-aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 303 VSRNNTTPPG-L-AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ccCCCCCcce-e-EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 221 1 22 2 333322211 00000000 000000000000 00000000000 0000000001
Q ss_pred CceeECCccCCCC---------------CCCC-----------------------CcceEEEEecCcEEEEEEEecCC--
Q 036540 194 DAHTINGKSGPLF---------------PCSE-----------------------KHTFAMEVESGKTYLLRIVNAAL-- 233 (562)
Q Consensus 194 ~~~~iNG~~~~~~---------------~~~~-----------------------~~~~~~~v~~G~~~rlRliN~~~-- 233 (562)
..+.|||..+... .|.. .....+.++.|++|.+.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 2477788765210 0000 01124788999999999999852
Q ss_pred ---CCeEEEEEcCcceEEEEeC-CCc-----------cCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 234 ---NDELFFAIAGHNMTVVEID-AVY-----------TKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 234 ---~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
...|+||||||.|+|++.. |.+ ..|...|++.+.++.-+-|.+++++ ||.|.||||-
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDN-PG~WlfHCHI 532 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADN-PGVWAFHCHI 532 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCC-CeEeeEeecc
Confidence 3579999999999999987 432 1477899999999999999999999 8999999995
No 36
>PLN02792 oxidoreductase
Probab=99.28 E-value=3.6e-10 Score=120.94 Aligned_cols=241 Identities=15% Similarity=0.105 Sum_probs=145.8
Q ss_pred eeeEEEEcCcC--CCceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEE
Q 036540 48 SKPIVTVNGMF--PGPTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 48 ~~~~~~~Ng~~--pgP~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~ 120 (562)
..+.+++||+- ..++|.|++|+++|+||.|... ....++..|....... .||.+- +....|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 34779999983 2479999999999999999985 4567888777654433 788532 33466999999999999
Q ss_pred eCCCCCceEEecCchhhccccee-EEEEcCCCCCCC---C-CCCC-CcceEEEEe---ecccc------CHH---HH--H
Q 036540 121 VTGQRGTLWWHAHILWLRATVYG-AIVIMPKERTSF---P-FPQP-YQETNIILG---EWWNS------DVE---TI--V 180 (562)
Q Consensus 121 ~~~~~Gt~wyH~h~~~~~~Gl~G-~iiV~~~~~~~~---~-~~~~-~~e~~l~~~---d~~~~------~~~---~~--~ 180 (562)
+++.+|.||...........+.+ +|+......... + .+.. +.....-.. ++... ... .. .
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 86667999988654211111222 233322211110 0 0000 000000000 00000 000 00 0
Q ss_pred H--hcc-cCCCCCCC--CCceeECCccCCC----------CC---C-C----C----------CcceEEEEecCcEEEEE
Q 036540 181 N--QGN-KLGLPPQT--SDAHTINGKSGPL----------FP---C-S----E----------KHTFAMEVESGKTYLLR 227 (562)
Q Consensus 181 ~--~~~-~~g~~~~~--~~~~~iNG~~~~~----------~~---~-~----~----------~~~~~~~v~~G~~~rlR 227 (562)
. ... .......+ .-.+.|||..+.. +. . + . ...-.+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 00000000 1235678776531 00 0 0 0 01345688999999999
Q ss_pred EEecCCCCeEEEEEcCcceEEEEeC-CC----------ccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 228 IVNAALNDELFFAIAGHNMTVVEID-AV----------YTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 228 liN~~~~~~~~~~l~gh~~~via~D-G~----------~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
|-|.. ...|+||||||.|+|++.. |. +..|...|++.+.++.-+-|.+++++ ||.|.||||-
T Consensus 417 iqn~~-~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDN-PGvW~~HCh~ 489 (536)
T PLN02792 417 FQNRE-KIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDN-VGMWNLRSQF 489 (536)
T ss_pred EECCC-CCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeC-CEEEeeeEcc
Confidence 99965 4579999999999999752 21 23688999999999999999999999 8999999984
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.18 E-value=1.6e-09 Score=117.33 Aligned_cols=228 Identities=13% Similarity=0.102 Sum_probs=132.6
Q ss_pred ceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCC-CceEEecCc
Q 036540 61 PTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQR-GTLWWHAHI 134 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~~~~-Gt~wyH~h~ 134 (562)
++|.|++|++.|+|++|... ....++..|....... .||.+- +....|+||||++.-+++++.+ +.||-..-.
T Consensus 226 ~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~ 304 (574)
T PLN02191 226 QTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGV 304 (574)
T ss_pred eEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEc
Confidence 37999999999999999974 4566677666654333 799653 2345699999999999985545 489988643
Q ss_pred hhhc----ccceeEEEEcCCCCCCCCC------CCCCc-----ceEE-EEeecccc-CHHHHHHh-cccCCCC-CCCCCc
Q 036540 135 LWLR----ATVYGAIVIMPKERTSFPF------PQPYQ-----ETNI-ILGEWWNS-DVETIVNQ-GNKLGLP-PQTSDA 195 (562)
Q Consensus 135 ~~~~----~Gl~G~iiV~~~~~~~~~~------~~~~~-----e~~l-~~~d~~~~-~~~~~~~~-~~~~g~~-~~~~~~ 195 (562)
.... .++ +.|--+.......+. +..+. .... .+...... ........ ....... ......
T Consensus 305 ~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 383 (574)
T PLN02191 305 RGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGYTK 383 (574)
T ss_pred cccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccceeCCeEE
Confidence 3211 232 222222221110000 00000 0000 00000000 00000000 0000000 000124
Q ss_pred eeECCccCCCCC-----------------------------------CC--CCcceEEEEecCcEEEEEEEecC-----C
Q 036540 196 HTINGKSGPLFP-----------------------------------CS--EKHTFAMEVESGKTYLLRIVNAA-----L 233 (562)
Q Consensus 196 ~~iNG~~~~~~~-----------------------------------~~--~~~~~~~~v~~G~~~rlRliN~~-----~ 233 (562)
+++||..+.... |. ....-.+.++.|+++.+=|.|.. .
T Consensus 384 ~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~ 463 (574)
T PLN02191 384 WAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVV 463 (574)
T ss_pred EEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCC
Confidence 567776541000 00 01112456777999999999875 3
Q ss_pred CCeEEEEEcCcceEEEEeCC-Cc-----------cCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 234 NDELFFAIAGHNMTVVEIDA-VY-----------TKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 234 ~~~~~~~l~gh~~~via~DG-~~-----------~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
...|+||||||.|+|++... .+ ..|...|++.+.++.-+-|.+++++ ||.|.||||-
T Consensus 464 ~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDN-PG~Wl~HCHi 532 (574)
T PLN02191 464 SEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDN-PGVWFFHCHI 532 (574)
T ss_pred CCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCC-CEEEEEecCc
Confidence 56899999999999997643 21 2577899999999999999999999 8999999995
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.12 E-value=5.4e-10 Score=98.92 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=72.4
Q ss_pred cceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCcc-----------CceEEeEEEeCCCceEEEEEEeCC
Q 036540 212 HTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYT-----------KPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 212 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-----------~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
....+.++.|++++|+|.|.+ ...|+||+|||.|+|++.++... .|..+|++.+.+|+++.+.+++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~-~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNG-SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECT-TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCC-CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 347899999999999999988 67999999999999999999873 678999999999999999999996
Q ss_pred CCCeEEEEEeec
Q 036540 281 SPSRYFMAARPF 292 (562)
Q Consensus 281 ~~G~~~i~~~~~ 292 (562)
||.|.+|||..
T Consensus 111 -~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 -PGPWLFHCHIL 121 (138)
T ss_dssp -TEEEEEEESSH
T ss_pred -ceEEEEEEchH
Confidence 89999999953
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.04 E-value=1.5e-08 Score=109.17 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=132.4
Q ss_pred ceEEEecCCEEEEEEEeCCC-CCceEEecCccccCCCCCCCCCc----ccccccCCCCeEEEEEEeCCCCC-ceEEecCc
Q 036540 61 PTIYIREGDRVLINVTNHAQ-YNMSIHWHGLKQYRNGWADGPAY----ITQCPIKTGNSYTYDFNVTGQRG-TLWWHAHI 134 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~t~~~i~pG~~~~y~~~~~~~~G-t~wyH~h~ 134 (562)
++|.|++|+++|+|++|... ....++..|....... .||.+- +....|.||||++.-+++++.+| .||.-.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 58999999999999999974 4556666666544333 788533 33456999999999999854455 79986432
Q ss_pred h--h-h-cccceeEEEEcCCCCC-----CCCC-CCCCcceEE------EEe-----eccccCH---HH---H-HHhcc-c
Q 036540 135 L--W-L-RATVYGAIVIMPKERT-----SFPF-PQPYQETNI------ILG-----EWWNSDV---ET---I-VNQGN-K 185 (562)
Q Consensus 135 ~--~-~-~~Gl~G~iiV~~~~~~-----~~~~-~~~~~e~~l------~~~-----d~~~~~~---~~---~-~~~~~-~ 185 (562)
. . . ..-+.|.-|++-.+.. +.|. +....+... .+. ....... .. + ..... .
T Consensus 296 ~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 375 (596)
T PLN00044 296 RFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLL 375 (596)
T ss_pred ccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeee
Confidence 1 1 0 1112222223321111 1011 000001000 000 0000000 00 0 00000 0
Q ss_pred CCC-CCCC--CCceeECCccCCC----------CCCCC-------C---------cceEEEEecCcEEEEEEEecCCCCe
Q 036540 186 LGL-PPQT--SDAHTINGKSGPL----------FPCSE-------K---------HTFAMEVESGKTYLLRIVNAALNDE 236 (562)
Q Consensus 186 ~g~-~~~~--~~~~~iNG~~~~~----------~~~~~-------~---------~~~~~~v~~G~~~rlRliN~~~~~~ 236 (562)
.+. ...+ .-.++|||..+.. ++.+. . ..-+..++.|++|.+-|-|.. ...
T Consensus 376 ~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~-~~~ 454 (596)
T PLN00044 376 QSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNA-TNV 454 (596)
T ss_pred ccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCC-CCC
Confidence 000 0000 0246778776531 00000 0 234567888999999999865 569
Q ss_pred EEEEEcCcceEEEEeCCC-----------ccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEe
Q 036540 237 LFFAIAGHNMTVVEIDAV-----------YTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAAR 290 (562)
Q Consensus 237 ~~~~l~gh~~~via~DG~-----------~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~ 290 (562)
|+||||||.|.|++...+ ++.|...|++.+.+|.-.-|.+++|+ ||.|.||||
T Consensus 455 HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDN-PG~W~lHCH 518 (596)
T PLN00044 455 QSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDN-AGIWNLRVE 518 (596)
T ss_pred CCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCC-CEEehhhcc
Confidence 999999999999976432 23588899999999999999999999 899999999
No 40
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=8.4e-07 Score=94.88 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=135.6
Q ss_pred eeEEEEcCcCCC-----ceEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCC---Cccc-ccccCCCCeEEEE
Q 036540 49 KPIVTVNGMFPG-----PTIYIREGDRVLINVTNHA-QYNMSIHWHGLKQYRNGWADGP---AYIT-QCPIKTGNSYTYD 118 (562)
Q Consensus 49 ~~~~~~Ng~~pg-----P~i~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DGv---~~~t-~~~i~pG~~~~y~ 118 (562)
-+..++||+-.- +++.+++|++.++|+.|.. .....+..-|....... .||. |..+ ..-|.|||++++-
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe-~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVE-VDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEE-ecceEEeeeeeceEEEcCCcEEEEE
Confidence 467999998521 6899999999999999996 33333333333332221 6773 2222 2458999999999
Q ss_pred EEeCCCCCceEEecCchhhcc----cceeEEEEcCCCC-----CCCC----CCC-CCcceEEEEeec---ccc------C
Q 036540 119 FNVTGQRGTLWWHAHILWLRA----TVYGAIVIMPKER-----TSFP----FPQ-PYQETNIILGEW---WNS------D 175 (562)
Q Consensus 119 ~~~~~~~Gt~wyH~h~~~~~~----Gl~G~iiV~~~~~-----~~~~----~~~-~~~e~~l~~~d~---~~~------~ 175 (562)
.++++.++.||.-.....+.. =+.+..+++-.+. ...+ .+. .+....+-+..- ... .
T Consensus 271 vtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 271 LTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred EeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 999777889988766533321 2223223322210 0000 000 000000000000 000 0
Q ss_pred HHHHHHhcc---------cCCCCC-CCCCceeECCccC---------------------CCCCCCC----------Ccce
Q 036540 176 VETIVNQGN---------KLGLPP-QTSDAHTINGKSG---------------------PLFPCSE----------KHTF 214 (562)
Q Consensus 176 ~~~~~~~~~---------~~g~~~-~~~~~~~iNG~~~---------------------~~~~~~~----------~~~~ 214 (562)
......... ...... .......||+..+ ..+.|.. ...-
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~ 430 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTS 430 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccce
Confidence 000000000 000000 0001123333221 0011211 1224
Q ss_pred EEEEecCcEEEEEEEecCC--CCeEEEEEcCcceEEEEeCCCcc-------------CceEEeEEEeCCCceEEEEEEeC
Q 036540 215 AMEVESGKTYLLRIVNAAL--NDELFFAIAGHNMTVVEIDAVYT-------------KPFTTQAILIAPGQTTNVLVKAD 279 (562)
Q Consensus 215 ~~~v~~G~~~rlRliN~~~--~~~~~~~l~gh~~~via~DG~~~-------------~p~~~d~v~l~pgeR~dv~v~~~ 279 (562)
.++++-++.+-+=|-|.+. ...|++|||||.|+|++.+.+.. .|...|||.|.||.-.-|.+.++
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 5788899999999999873 34678899999999999943221 35678999999999999999999
Q ss_pred CCCCeEEEEEee
Q 036540 280 QSPSRYFMAARP 291 (562)
Q Consensus 280 ~~~G~~~i~~~~ 291 (562)
+ ||-|.||||-
T Consensus 511 N-PG~W~~HCHi 521 (563)
T KOG1263|consen 511 N-PGVWLMHCHI 521 (563)
T ss_pred C-CcEEEEEEec
Confidence 9 8999999995
No 41
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.72 E-value=6.2e-08 Score=82.58 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=68.2
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+++.++.|+.|++.+.|.. ...+.+|+||...- .. .+ .+.. +.. -.-.|.|++..+.+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~--~~---~~---~DG~------~~~-~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQP--PS---PW---MDGV------PGV-TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBST--TG---GG---GSGG------TTT-SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeee--ee---ee---cCCc------ccc-cceeEEeecceeeeEee
Confidence 46789999999999999975 67899999996431 00 00 0000 000 01358899999999999
Q ss_pred cC-ceeEEEEeehhHhHhccceEEEEEecC
Q 036540 517 DN-PGVWFMHCHLELHTMWGLKMAFVVENG 545 (562)
Q Consensus 517 dn-pG~w~~HCHil~H~d~GM~~~~~V~~~ 545 (562)
+. +|.|.||||...|...||...|.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999864
No 42
>PRK02710 plastocyanin; Provisional
Probab=98.65 E-value=8.8e-07 Score=75.83 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=54.0
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhccc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT 140 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~G 140 (562)
+.|++++||+| +++|....++++.+.|.... . -+...+.||++++|.|. ++|+|-|+|-.| ..+|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~----~-----~~~~~~~pg~t~~~tF~---~~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL----S-----HKDLAFAPGESWEETFS---EAGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCccc----c-----ccccccCCCCEEEEEec---CCEEEEEEcCCC-ccCC
Confidence 89999999985 56788778888877643210 0 01124789999999986 389999999722 2379
Q ss_pred ceeEEEEc
Q 036540 141 VYGAIVIM 148 (562)
Q Consensus 141 l~G~iiV~ 148 (562)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.37 E-value=7.5e-07 Score=74.52 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=46.3
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhccc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT 140 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~G 140 (562)
..|++++|+.|+|+++|.....+.+...++... ..|.||++.+++|.. .++|+|=|+|..++ .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP--N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS---T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-
Confidence 699999999999999999888766666653322 368999999999986 89999999999766 2
Q ss_pred ceeEEEE
Q 036540 141 VYGAIVI 147 (562)
Q Consensus 141 l~G~iiV 147 (562)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6777765
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.29 E-value=5e-06 Score=68.73 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=55.3
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcc--cccccCCCCeEEEEEEeCCCCCceEEecCchhhc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYI--TQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLR 138 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~--t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~ 138 (562)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|. .+|+|.|+|. ....
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC-Cccc
Confidence 78999999986 56688777888877643321110 0100011 2235789999999886 3999999998 2233
Q ss_pred ccceeEEEEc
Q 036540 139 ATVYGAIVIM 148 (562)
Q Consensus 139 ~Gl~G~iiV~ 148 (562)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 45
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.13 E-value=1.9e-05 Score=70.02 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=58.8
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecC---C--CEEEE
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPT---G--GWTAI 512 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp---~--g~~~i 512 (562)
+.+.++.|++|++++.|.. ....|.|-||.+.-..- ..+..+. .+..-..-.+|+ + ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~~~~------~~p~mdG------~~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGPPYP------YMPGMDG------LGFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCC--CCccccEEeecCCCccc------cccccCC------CCccccCcccCCCCCCccceeEE
Confidence 5578999999999999975 23567776664321000 0000000 011111112222 2 24678
Q ss_pred EEEecCceeEEEEeehhHhHhccceEEEEEe
Q 036540 513 RFRADNPGVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 513 rf~~dnpG~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
.|+++.+|.|.||||+..|...||...+.|+
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 8999999999999999999999999999874
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.11 E-value=2e-05 Score=62.76 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=53.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhccc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT 140 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~G 140 (562)
+.|++++||+| +++|....++++++.........+.. ..+.||+++++.| +++|+|-|||-.+. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 78999999996 56898888888887643211111111 1357888888777 46999999998775 5
Q ss_pred ceeEEEEc
Q 036540 141 VYGAIVIM 148 (562)
Q Consensus 141 l~G~iiV~ 148 (562)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 89999885
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.97 E-value=2.7e-05 Score=64.40 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=53.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCC-CCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhcc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWAD-GPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRA 139 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~D-Gv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~ 139 (562)
..|.+++||+| ++.|....++++.+---........+ .........+.||++++++|+ ++|+|.|+|- ....+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~-PH~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT-PHYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET-TTGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC-CCccc
Confidence 79999999985 56776667777776321110000000 000002235789999999997 6999999998 33337
Q ss_pred cceeEEEEc
Q 036540 140 TVYGAIVIM 148 (562)
Q Consensus 140 Gl~G~iiV~ 148 (562)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999985
No 48
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.92 E-value=3.4e-05 Score=69.83 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=76.5
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
..++.++.|++++|.|.|.+ ....+.|++.||+|+||+.... ...|...|++.|.+|+.+-|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 56789999999999999976 3557999999999999998421 133778899999999999999999
Q ss_pred cC-ceeEEEEe----ehhHhHhccceEEEEEe
Q 036540 517 DN-PGVWFMHC----HLELHTMWGLKMAFVVE 543 (562)
Q Consensus 517 dn-pG~w~~HC----Hil~H~d~GM~~~~~V~ 543 (562)
+. +|.|.++| +...+...|+..-+++-
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 87 99999999 66778888888777654
No 49
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.92 E-value=0.00027 Score=62.81 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=72.3
Q ss_pred eEEEEcCcCCC-ceEEEecCCEEEEEEEeCCCCCceEEec--Ccccc--CCCCCCCCC----ccc-----ccccCCCCeE
Q 036540 50 PIVTVNGMFPG-PTIYIREGDRVLINVTNHAQYNMSIHWH--GLKQY--RNGWADGPA----YIT-----QCPIKTGNSY 115 (562)
Q Consensus 50 ~~~~~Ng~~pg-P~i~v~~Gd~v~i~~~N~l~~~~siH~H--G~~~~--~~~~~DGv~----~~t-----~~~i~pG~~~ 115 (562)
+.+-|||+..| ++|.+..|-+|.|.|+|....++++-.- +-..+ +....||.. |.+ ...|.+|++.
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 34778998888 8999999999999999998777665541 11111 001146621 222 1346788885
Q ss_pred EEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCC
Q 036540 116 TYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKER 152 (562)
Q Consensus 116 ~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~ 152 (562)
.-.|. +-++|+|||-|-.-+.. +||+|-+||-..-.
T Consensus 153 sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 153 SGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred EEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 55555 47999999999998877 99999999986544
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.90 E-value=0.00026 Score=64.40 Aligned_cols=103 Identities=21% Similarity=0.221 Sum_probs=74.3
Q ss_pred eEEEEcCcCCC-ceEEEecCCEEEEEEEeCCCCCceEEe--cCcccc--CCCCCCCCC----c-----ccccccCCCCeE
Q 036540 50 PIVTVNGMFPG-PTIYIREGDRVLINVTNHAQYNMSIHW--HGLKQY--RNGWADGPA----Y-----ITQCPIKTGNSY 115 (562)
Q Consensus 50 ~~~~~Ng~~pg-P~i~v~~Gd~v~i~~~N~l~~~~siH~--HG~~~~--~~~~~DGv~----~-----~t~~~i~pG~~~ 115 (562)
+.+-|||..-| ++|.+..|-+|.|+|+|....++++-. -+-.++ ..-..||.- + .+...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47889998877 899999999999999999766554332 122111 111245511 1 123468899999
Q ss_pred EEEEEeCCCCCceEEecCchhhc-ccceeEEEEcCCCCC
Q 036540 116 TYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVIMPKERT 153 (562)
Q Consensus 116 ~y~~~~~~~~Gt~wyH~h~~~~~-~Gl~G~iiV~~~~~~ 153 (562)
.-.|.. -++|+|||-|-..+.. +||++-|+|...-..
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 877753 6899999999998888 899999999876543
No 51
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.81 E-value=9.5e-05 Score=79.06 Aligned_cols=99 Identities=20% Similarity=0.308 Sum_probs=70.7
Q ss_pred EeecCCcee--eEEEEcCcCCCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEE
Q 036540 41 NVSRLCNSK--PIVTVNGMFPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYD 118 (562)
Q Consensus 41 ~~~~~g~~~--~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~ 118 (562)
.+.++|... .+.+..-.+--+.|+|++||.|+++|+|.....=.+ ||+.+... |+ ..-+.||++.+..
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svt 602 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVT 602 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEE
Confidence 366777444 445566666447899999999999999964322222 56665422 12 1357899999999
Q ss_pred EEeCCCCCceEEecCch--hhcccceeEEEEcCC
Q 036540 119 FNVTGQRGTLWWHAHIL--WLRATVYGAIVIMPK 150 (562)
Q Consensus 119 ~~~~~~~Gt~wyH~h~~--~~~~Gl~G~iiV~~~ 150 (562)
|++ +++|.|||||..- ..-.+|.|.|+|+++
T Consensus 603 F~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 603 FTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 997 8999999999863 222799999999864
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.70 E-value=0.00043 Score=59.04 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=54.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhccc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRAT 140 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~G 140 (562)
-.|++++||+ |+++|.....++++.-+.. .+ +|.- .....+|+++++.|. .+|+|-|+|-.| ..+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH-~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPH-PGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc---ccccCCCcceEEEec---ccceEEEEeccC-CCCC
Confidence 5899999999 7888998888888876555 11 2221 123455688888885 599999998543 1279
Q ss_pred ceeEEEEcC
Q 036540 141 VYGAIVIMP 149 (562)
Q Consensus 141 l~G~iiV~~ 149 (562)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.60 E-value=0.00029 Score=58.22 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=57.1
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
..+.++.|++|+|+ |.+ ...|-+.++...+..-. .........+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGV--------------KELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccch--------------hhhcccccccccccCCCCEEEEEeCC-
Confidence 34788999999987 533 45787776543211100 00011223467788999988886665
Q ss_pred CceeEEEEeehhHhHhccceEEEEEe
Q 036540 518 NPGVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 518 npG~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
+|.|.|||- .|...||...+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999874
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.49 E-value=0.00047 Score=59.26 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=56.1
Q ss_pred eECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEE
Q 036540 197 TINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLV 276 (562)
Q Consensus 197 ~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v 276 (562)
..|++..| ..++|++|++++|++.|.+. ..|.+.++++.+ ...|.|||+..+.+
T Consensus 53 a~n~~~~P---------~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~gi----------------s~~I~pGet~TitF 106 (135)
T TIGR03096 53 AFNVLNEP---------EALVVKKGTPVKVTVENKSP-ISEGFSIDAYGI----------------SEVIKAGETKTISF 106 (135)
T ss_pred eeeeEEcC---------CEEEECCCCEEEEEEEeCCC-CccceEECCCCc----------------ceEECCCCeEEEEE
Confidence 45776543 67999999999999999994 677777776521 45789999999999
Q ss_pred EeCCCCCeEEEEEeec
Q 036540 277 KADQSPSRYFMAARPF 292 (562)
Q Consensus 277 ~~~~~~G~~~i~~~~~ 292 (562)
++++ ||.|+++|...
T Consensus 107 ~adK-pG~Y~y~C~~H 121 (135)
T TIGR03096 107 KADK-AGAFTIWCQLH 121 (135)
T ss_pred ECCC-CEEEEEeCCCC
Confidence 9999 79999999754
No 55
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.36 E-value=0.0013 Score=55.61 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=48.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEe-cCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhcc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHW-HGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRA 139 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~-HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~ 139 (562)
..|.+++||+|+....|. ++++.+ .+.. .+|... ..-.+|++++++| +++|+|=|+|-. ...+
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~p-H~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTP-HYGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCC-CccC
Confidence 789999999976665554 455444 1211 122211 1124577766666 469999999972 2338
Q ss_pred cceeEEEEcCCC
Q 036540 140 TVYGAIVIMPKE 151 (562)
Q Consensus 140 Gl~G~iiV~~~~ 151 (562)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998754
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.13 E-value=0.0038 Score=52.68 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=49.6
Q ss_pred ceEEEecCCEEEEEEEeCC-CCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhcc
Q 036540 61 PTIYIREGDRVLINVTNHA-QYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRA 139 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~ 139 (562)
..|.+++||+|+ ++|+. ..++++..-+ ...|.-+ .....+|++++|.|. ++|+|-|+|-.| ..+
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f~s~-----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDLDES-----ERVSEEGTTYEHTFE---EPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCcccc-----ccccCCCCEEEEEec---CCcEEEEEccCC-CCC
Confidence 789999999955 66543 4666665421 0111101 123578999999984 699999999744 236
Q ss_pred cceeEEEEc
Q 036540 140 TVYGAIVIM 148 (562)
Q Consensus 140 Gl~G~iiV~ 148 (562)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999985
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.81 E-value=0.0054 Score=50.61 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=53.7
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
..+.++.|++|.|+..+ ...|.+.+ ...+ .....+.... +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEE-------eccc---cccccccccc----CccccceecCCCCEEEEEeC--
Confidence 44788999999998764 44566543 2211 0000000000 01115667778888777776
Q ss_pred CceeEEEEeehhHhHhccceEEEEEe
Q 036540 518 NPGVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 518 npG~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
.+|.|.|+|- - |...||-..+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 4 9999999999885
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.78 E-value=0.0082 Score=49.99 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=42.5
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEe
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAAR 290 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~ 290 (562)
..+++++|+.++|.+.|.+ ...|.|.+++..+ ...|.||+...+.|...+ +|.|.+.|.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~-~~~h~~~i~~~~~----------------~~~l~~g~~~~~~f~~~~-~G~y~~~C~ 93 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNND-SRPHEFVIPDLGI----------------SKVLPPGETATVTFTPLK-PGEYEFYCT 93 (104)
T ss_dssp -EEEEETTCEEEEEEEE-S-SS-EEEEEGGGTE----------------EEEE-TT-EEEEEEEE-S--EEEEEB-S
T ss_pred CEEEEcCCCeEEEEEEECC-CCcEEEEECCCce----------------EEEECCCCEEEEEEcCCC-CEEEEEEcC
Confidence 5799999999999999998 4457777777222 257889999999998777 799999996
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.47 E-value=0.012 Score=63.34 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=58.1
Q ss_pred eEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecC
Q 036540 439 LSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADN 518 (562)
Q Consensus 439 ~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn 518 (562)
-+.++.|+.|.+++.|........|.|-|-++.. -+.+.|+....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 3678999999999999643345678877754421 234567888999999999
Q ss_pred ceeEEEEeehhHhH-hccceEEEEEec
Q 036540 519 PGVWFMHCHLELHT-MWGLKMAFVVEN 544 (562)
Q Consensus 519 pG~w~~HCHil~H~-d~GM~~~~~V~~ 544 (562)
||.|.+||...-|. +.+|...+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999874432 238888888864
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.98 E-value=0.033 Score=47.55 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=49.6
Q ss_pred eEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecC
Q 036540 439 LSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADN 518 (562)
Q Consensus 439 ~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn 518 (562)
.+.++.|++|+|+ |.+ ...|.+.+.+... + ......+.++....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~---------------~~~~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------L---------------SHKDLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------c---------------cccccccCCCCEEEEEecC--
Confidence 3688899999986 432 4578876543210 0 0011346677776666655
Q ss_pred ceeEEEEeehhHhHhccceEEEEEe
Q 036540 519 PGVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 519 pG~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
||.|.|+|= .|...||-..+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999874
No 61
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.83 E-value=0.084 Score=48.32 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=60.3
Q ss_pred CceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecCCCCeEEEEEcCc-----ceEEEEeCCCcc-----CceEEeE
Q 036540 194 DAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAALNDELFFAIAGH-----NMTVVEIDAVYT-----KPFTTQA 263 (562)
Q Consensus 194 ~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh-----~~~via~DG~~~-----~p~~~d~ 263 (562)
+.+-+||... ...++.+.+|-+|.++++|.+ ...|.|-+-.- ....++.||..+ .+-....
T Consensus 74 ~~~nfnGts~--------G~m~i~VPAGw~V~i~f~N~~-~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~ 144 (196)
T PF06525_consen 74 NPFNFNGTSN--------GQMTIYVPAGWNVQITFTNQE-SLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTS 144 (196)
T ss_pred CceeeecccC--------CcEEEEEcCCCEEEEEEEcCC-CCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCcccc
Confidence 3567888653 458899999999999999987 67777666421 234567777654 1111122
Q ss_pred EEeCCCceEEEEEEeCCCCCeEEEEEe
Q 036540 264 ILIAPGQTTNVLVKADQSPSRYFMAAR 290 (562)
Q Consensus 264 v~l~pgeR~dv~v~~~~~~G~~~i~~~ 290 (562)
--|.+||++...+..-. +|.|||.|.
T Consensus 145 ~GI~~G~s~~~~~~~l~-aG~YwlvC~ 170 (196)
T PF06525_consen 145 NGISSGQSASGVYNDLP-AGYYWLVCG 170 (196)
T ss_pred CCccCCceeeEEEccCC-CceEEEEcc
Confidence 35569999987775444 799999996
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.12 Score=45.20 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCceEEEecCCEEEEEEEeCCCC--CceE---------EecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCC
Q 036540 58 FPGPTIYIREGDRVLINVTNHAQY--NMSI---------HWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRG 126 (562)
Q Consensus 58 ~pgP~i~v~~Gd~v~i~~~N~l~~--~~si---------H~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~G 126 (562)
+++-.+.++.|++++..+.|...- ..++ -.|..... -+++- ......+.||++-+..|.. .++|
T Consensus 60 f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d-~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 60 FKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHD-DPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred cCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccC-CcceeEeCCCCcEEEEEEe-cCCc
Confidence 566789999999999999998531 1111 11222222 13331 1123569999999999998 7899
Q ss_pred ceEEecCchhhc-ccceeEEEEcC
Q 036540 127 TLWWHAHILWLR-ATVYGAIVIMP 149 (562)
Q Consensus 127 t~wyH~h~~~~~-~Gl~G~iiV~~ 149 (562)
.|=+-|-..+.+ +||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999 89999998864
No 63
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.98 E-value=0.35 Score=49.45 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=51.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEec-CccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhcc
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWH-GLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRA 139 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~H-G~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~ 139 (562)
..+.++.|+ +++.|+|....++..-.- |..+. .. ...|.||.+.++.+++ .+|+|-|+|-.+ .
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv-----~e-----~EnIaPG~s~~l~~~L--~pGtY~~~C~~~---~ 107 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVV-----EE-----RENIAPGFSQKMTANL--QPGEYDMTCGLL---T 107 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEeecccccc-----cc-----ccccCCCCceEEEEec--CCceEEeecCcC---C
Confidence 689999996 899999998766442211 11110 00 1468999999988776 699999999432 3
Q ss_pred cceeEEEEcCCC
Q 036540 140 TVYGAIVIMPKE 151 (562)
Q Consensus 140 Gl~G~iiV~~~~ 151 (562)
.+.|.|+|..+.
T Consensus 108 ~~~g~l~Vtg~~ 119 (375)
T PRK10378 108 NPKGKLIVKGEA 119 (375)
T ss_pred CCCceEEEeCCC
Confidence 347899998653
No 64
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.88 E-value=0.15 Score=43.13 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=28.7
Q ss_pred EEEEecCceeEEEEeehhHhHhccceEEEEEecCC
Q 036540 512 IRFRADNPGVWFMHCHLELHTMWGLKMAFVVENGK 546 (562)
Q Consensus 512 irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~~ 546 (562)
+.++++.+|.|-|+|= .|...||-..+.|.++.
T Consensus 58 ~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 58 YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 5566688999999998 99999999999998753
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.80 E-value=0.36 Score=41.19 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=49.2
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.++.|+.++|++.+.. -.|.|.+.+..+++ .+-||+.-.+.+++++ ||.|.++|.-++
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~~-~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIKM----------------DAIPGRTNSVTFTPDK-PGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEEE----------------EEBTTCEEEEEEEESS-SEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCccc----------------ccccccceeeeeeecc-CCcEEEcCcccc
Confidence 5799999999999999854 67788887766554 4559999999999988 799999998654
Q ss_pred C
Q 036540 294 D 294 (562)
Q Consensus 294 ~ 294 (562)
.
T Consensus 107 G 107 (120)
T PF00116_consen 107 G 107 (120)
T ss_dssp S
T ss_pred C
Confidence 3
No 66
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.47 E-value=0.3 Score=38.65 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
..+.+..|++|.|+ |.. ...|-++.+...+ +..+ +. ...+.++. ..+++++
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~--~~~~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQ--AYSLTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCC--EEEEECC
Confidence 34778899999985 532 5678887653211 0000 00 11223443 3456778
Q ss_pred CceeEEEEeehhHhHhccceEEEEEe
Q 036540 518 NPGVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 518 npG~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
.||.|.|||=+ |- +|-..+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 99999999986 44 588888764
No 67
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.17 E-value=0.29 Score=41.45 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=54.9
Q ss_pred ceEEEecC-CEEEEEEEeCCCCCceEEecCccccCCCC--------------CCCCCc------ccccccCCCCeEEEEE
Q 036540 61 PTIYIREG-DRVLINVTNHAQYNMSIHWHGLKQYRNGW--------------ADGPAY------ITQCPIKTGNSYTYDF 119 (562)
Q Consensus 61 P~i~v~~G-d~v~i~~~N~l~~~~siH~HG~~~~~~~~--------------~DGv~~------~t~~~i~pG~~~~y~~ 119 (562)
..|.|..+ ..|.|+|.|....+-..--|.+-.....- .|=+|. ..-.-|.|||+-+.+|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 67999984 78999999986544222222111100000 111211 0113489999999999
Q ss_pred EeCC-CCCc-eEEecCchhhcccceeEEE
Q 036540 120 NVTG-QRGT-LWWHAHILWLRATVYGAIV 146 (562)
Q Consensus 120 ~~~~-~~Gt-~wyH~h~~~~~~Gl~G~ii 146 (562)
+++. ++|+ |-|-|-..+....|.|.+.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9842 5786 9999999888888888875
No 68
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.16 Score=44.46 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=61.8
Q ss_pred EEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCc
Q 036540 440 SKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNP 519 (562)
Q Consensus 440 ~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnp 519 (562)
..++.|++++.++.|.. ...|=|=+= ++...-+ .+... ....-..---..++.+.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~~--~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNLE--HVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCcc---cceEEEecc---Cccccch--hHHHh---hhCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 45678999999999965 334444322 1111110 00000 0000001123458999999999999999999
Q ss_pred eeEEEEeehhHhHhccceEEEEEe
Q 036540 520 GVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 520 G~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
|.|-|-|-|-+|-+.||-..+.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999875
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.60 E-value=0.87 Score=38.46 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=46.8
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
..+.++.|++|.|+-.+. ...|-.. +.+.+.|+.. .....++.. ..++++
T Consensus 42 ~~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s~---------------~~~~~~G~t--~s~Tf~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDES---------------ERVSEEGTT--YEHTFE 91 (115)
T ss_pred CEEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCcccc---------------ccccCCCCE--EEEEec
Confidence 347889999999985431 2345442 2222223210 111234444 445557
Q ss_pred CceeEEEEeehhHhHhccceEEEEEe
Q 036540 518 NPGVWFMHCHLELHTMWGLKMAFVVE 543 (562)
Q Consensus 518 npG~w~~HCHil~H~d~GM~~~~~V~ 543 (562)
.||.|-|+|= .|...||-..+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999998 89999999999874
No 70
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.63 E-value=1.6 Score=41.07 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=55.7
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCch-hhc-
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHIL-WLR- 138 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~-~~~- 138 (562)
..|.+..|+.|++++++.. .+ ||..++. -|+ +.-.-||..-+..|++ +++|+|...|..- |..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~----~~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPE----LGG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hcccccc----cCc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999863 12 5665532 121 2346789999999987 8999999998752 222
Q ss_pred ccceeEEEEcCCC
Q 036540 139 ATVYGAIVIMPKE 151 (562)
Q Consensus 139 ~Gl~G~iiV~~~~ 151 (562)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7788888888653
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=90.64 E-value=3.4 Score=32.60 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=39.6
Q ss_pred EEEEEEEecCCCCeEEEEEc-CcceEEE--EeCCCccC--------ceEEeEEEeCCCceEEEEEEeCCC---CCeEEEE
Q 036540 223 TYLLRIVNAALNDELFFAIA-GHNMTVV--EIDAVYTK--------PFTTQAILIAPGQTTNVLVKADQS---PSRYFMA 288 (562)
Q Consensus 223 ~~rlRliN~~~~~~~~~~l~-gh~~~vi--a~DG~~~~--------p~~~d~v~l~pgeR~dv~v~~~~~---~G~~~i~ 288 (562)
.+.|++.|.+ ...+.|.+. |+.+.++ ..+|..+- -+......|.|||...+-.+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3578889998 777777775 6655554 44666541 234578999999999999999874 6899875
Q ss_pred E
Q 036540 289 A 289 (562)
Q Consensus 289 ~ 289 (562)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 3
No 72
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.13 E-value=4.5 Score=34.49 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=52.6
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+.+.++.|+.|.+.+.+. +..|.|.+-..... +.+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k----------------------------~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIK----------------------------MDAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEE----------------------------EEEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCcc----------------------------cccccccceeeeeee
Confidence 4557899999999999994 56788877654332 345677888999999
Q ss_pred cCceeEEEEeehhHhHh-ccceEEEEE
Q 036540 517 DNPGVWFMHCHLELHTM-WGLKMAFVV 542 (562)
Q Consensus 517 dnpG~w~~HCHil~H~d-~GM~~~~~V 542 (562)
+.||.|-..|..+=..- .-|...+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 99999999998765333 345555544
No 73
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=89.95 E-value=3 Score=37.62 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=57.8
Q ss_pred ceeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCC-CCCCCCCCCCCCCCCCccceeee------cCCC
Q 036540 436 GTRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGN-FDPKKDPAKFNLVDPPERNTVGV------PTGG 508 (562)
Q Consensus 436 ~~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~-~~~~~~~~~~~~~~p~~rDTv~v------pp~g 508 (562)
+...+.++.|-.|.+++.|.. ...| .+-|+..+... +++.-..+..-+.-+ -++-.. ..|.
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~v--G~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINST--GATTSIYYGNGISSGH 150 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeec--ccccCccccccccccc
Confidence 456688999999999999965 4444 44555443211 011000000000000 011111 2333
Q ss_pred EEEEEEEecCceeEEEEeehhHhHhccceEEEEEecC
Q 036540 509 WTAIRFRADNPGVWFMHCHLELHTMWGLKMAFVVENG 545 (562)
Q Consensus 509 ~~~irf~~dnpG~w~~HCHil~H~d~GM~~~~~V~~~ 545 (562)
....-+..-.||.|-+=|-|.-|.+.||=..+.|-..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 4445555568999999999999999999999988653
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=89.17 E-value=1.8 Score=40.65 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=54.8
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
+.+.++.|+.|++.+.+. +..|.|.+-+.. --..+-||-...+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~~~----------------------------~k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK----DVIHSFWVPELG----------------------------GKIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeC----chhhcccccccC----------------------------ceEEecCCcEEEEEEEeC
Confidence 447889999999999984 445665543221 123345778889999999
Q ss_pred CceeEEEEeehhHhH-hccceEEEEEecC
Q 036540 518 NPGVWFMHCHLELHT-MWGLKMAFVVENG 545 (562)
Q Consensus 518 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 545 (562)
.||.|...|...-.. +..|...++|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 999999999983322 3678888888764
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=85.73 E-value=1.9 Score=33.98 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=30.2
Q ss_pred eEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCc---ccccccCCCCeEEEEEEeCCC---CCceEE
Q 036540 62 TIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAY---ITQCPIKTGNSYTYDFNVTGQ---RGTLWW 130 (562)
Q Consensus 62 ~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~---~t~~~i~pG~~~~y~~~~~~~---~Gt~wy 130 (562)
+|+..-|++..+.|.|... -.+. .|++|-.. +....|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g---------~~vw--rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEG---------KEVW--RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT-----------EEE--ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCC---------CEEE--EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 5555566666666664422 1111 56787544 345679999999999998433 688753
No 76
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=84.71 E-value=1.2 Score=26.66 Aligned_cols=20 Identities=15% Similarity=-0.062 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHhhhcc
Q 036540 4 QHRRHLVLLLTIFYFLGFLS 23 (562)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~ 23 (562)
.+||+||++.+++++.+.+.
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 58999999888766666554
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.45 E-value=4.4 Score=39.18 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=48.3
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|++|+|++.... -.|.|.+.+-..+ +..-||...+..+++++ +|.|..+|..++
T Consensus 137 n~l~lPv~~~V~f~ltS~D--ViHsF~IP~l~~k----------------~d~iPG~~~~~~~~~~~-~G~Y~g~Cae~C 197 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD--VIHSFWIPQLGGK----------------IDAIPGMTTELWLTANK-PGTYRGICAEYC 197 (247)
T ss_pred ceEEEeCCCeEEEEEEech--hceeEEecCCCce----------------eeecCCceEEEEEecCC-CeEEEEEcHhhc
Confidence 5689999999999997664 4555555544443 45569999999999998 799999998765
Q ss_pred CC
Q 036540 294 DA 295 (562)
Q Consensus 294 ~~ 295 (562)
..
T Consensus 198 G~ 199 (247)
T COG1622 198 GP 199 (247)
T ss_pred CC
Confidence 43
No 78
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=84.08 E-value=5.4 Score=34.29 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=45.7
Q ss_pred eEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecC
Q 036540 439 LSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADN 518 (562)
Q Consensus 439 ~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn 518 (562)
.+.++.|++|+|+-.. ...|-.+.=+-. .|..-+++...++.. ..+.++-
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s--~~~Tfe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINES--FTHTFET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcc--eEEEecc
Confidence 3678899999998543 335666532211 111112222222233 4455555
Q ss_pred ceeEEEEeehhHhHhccceEEEEEec
Q 036540 519 PGVWFMHCHLELHTMWGLKMAFVVEN 544 (562)
Q Consensus 519 pG~w~~HCHil~H~d~GM~~~~~V~~ 544 (562)
||.|-|.|- .|...||-..+.|++
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeCC
Confidence 999999995 688899999998863
No 79
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=83.44 E-value=8.1 Score=32.87 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=50.6
Q ss_pred eEEEEec-CcEEEEEEEecCCC----CeEEEEEc-CcceEEEE-------eCCCccCc----eEEeEEEeCCCceEEEEE
Q 036540 214 FAMEVES-GKTYLLRIVNAALN----DELFFAIA-GHNMTVVE-------IDAVYTKP----FTTQAILIAPGQTTNVLV 276 (562)
Q Consensus 214 ~~~~v~~-G~~~rlRliN~~~~----~~~~~~l~-gh~~~via-------~DG~~~~p----~~~d~v~l~pgeR~dv~v 276 (562)
..|+|++ ++.+++.|-|.|.. +.|++-|- .-.+.-++ .|-+|+.+ +...+=.|++||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 4689998 48999999999832 23444442 11222222 23345532 234567899999999999
Q ss_pred EeCC-CCC-eEEEEEe
Q 036540 277 KADQ-SPS-RYFMAAR 290 (562)
Q Consensus 277 ~~~~-~~G-~~~i~~~ 290 (562)
+++. .+| +|.+.|.
T Consensus 96 ~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCS 111 (125)
T ss_pred ECCCCCCCCcceEEEc
Confidence 9874 356 6999996
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=80.30 E-value=82 Score=33.18 Aligned_cols=176 Identities=15% Similarity=0.286 Sum_probs=101.7
Q ss_pred EEEecCCE--EEEEEEeCCC--CCceEEecCccc-cCCCCCCCCCcccccccCCCCeEEEEEEe-C---CCCCceEEecC
Q 036540 63 IYIREGDR--VLINVTNHAQ--YNMSIHWHGLKQ-YRNGWADGPAYITQCPIKTGNSYTYDFNV-T---GQRGTLWWHAH 133 (562)
Q Consensus 63 i~v~~Gd~--v~i~~~N~l~--~~~siH~HG~~~-~~~~~~DGv~~~t~~~i~pG~~~~y~~~~-~---~~~Gt~wyH~h 133 (562)
+.+.++++ +.|++.|... +...+-.-|+.- ....+.+|--.+|...+.||++.+....+ + -.+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 45566665 6678888874 445555555542 22233577667888889999999988887 2 235554
Q ss_pred chhhcccceeEEEEcCCCCCCCCCCCCCcceEEEEeeccccCHHHHHHhcccCCCCCCCCCceeECCccCCCCCCCCCcc
Q 036540 134 ILWLRATVYGAIVIMPKERTSFPFPQPYQETNIILGEWWNSDVETIVNQGNKLGLPPQTSDAHTINGKSGPLFPCSEKHT 213 (562)
Q Consensus 134 ~~~~~~Gl~G~iiV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~ 213 (562)
-..|+-...+ ...++.++-+.-- |.. ....-+-||.
T Consensus 353 ---------nv~I~A~s~s------~v~~e~~lki~~~---------------g~~--~~~v~l~~g~------------ 388 (513)
T COG1470 353 ---------NVTITASSSS------GVTRELPLKIKNT---------------GSY--NELVKLDNGP------------ 388 (513)
T ss_pred ---------eEEEEEeccc------cceeeeeEEEEec---------------ccc--ceeEEccCCc------------
Confidence 3333332221 1134444444321 100 0012233554
Q ss_pred eEEEEecC--cEEEEEEEecCCCC--eEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCce--EEEEEEeCC--CCCeE
Q 036540 214 FAMEVESG--KTYLLRIVNAALND--ELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQT--TNVLVKADQ--SPSRY 285 (562)
Q Consensus 214 ~~~~v~~G--~~~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR--~dv~v~~~~--~~G~~ 285 (562)
..+++.+| +.+++++-|.|+.. .+.+.+++-+=+-+.+|+.. .+ .|.||+| +++.++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~-----I~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDEST-----IP--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccc-----cc--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 35778888 46689999999443 45677777666777777753 33 2445554 455555554 35899
Q ss_pred EEEEeecCC
Q 036540 286 FMAARPFMD 294 (562)
Q Consensus 286 ~i~~~~~~~ 294 (562)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 998775444
No 81
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=79.56 E-value=3 Score=42.95 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=52.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhh--c
Q 036540 61 PTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWL--R 138 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~--~ 138 (562)
-++.|++||.|.+.++|-.-..--+| |.-.. .-|+. ..+.|-++-.|.|.+ +.+|.+||.|--.-. .
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeeec----cCceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 47789999999999988865444444 33322 12221 457888899999998 899999998754322 2
Q ss_pred ccceeEEEEc
Q 036540 139 ATVYGAIVIM 148 (562)
Q Consensus 139 ~Gl~G~iiV~ 148 (562)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 4556667765
No 82
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=77.43 E-value=6.5 Score=37.59 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=46.3
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+||++...... |.|.| |.-.-....-||..-.+.+++++ ||.|...|..++
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~-~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIANE-PGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeCC-CEEEEEEchhhc
Confidence 468899999999998877632 55555 33333345559999999999998 799999998654
Q ss_pred C
Q 036540 294 D 294 (562)
Q Consensus 294 ~ 294 (562)
.
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 3
No 83
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.12 E-value=9.9 Score=36.80 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=54.1
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
+-+.++.|+.|++.+... +.-|.|.+-+-.+ -+.+-||-...+.++++
T Consensus 137 n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~----------------------------k~d~iPG~~~~~~~~~~ 184 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA----DVIHSFWIPQLGG----------------------------KIDAIPGMTTELWLTAN 184 (247)
T ss_pred ceEEEeCCCeEEEEEEec----hhceeEEecCCCc----------------------------eeeecCCceEEEEEecC
Confidence 447889999999999874 4456665544322 23344667788899999
Q ss_pred CceeEEEEeehhHhHh-ccceEEEEEecCC
Q 036540 518 NPGVWFMHCHLELHTM-WGLKMAFVVENGK 546 (562)
Q Consensus 518 npG~w~~HCHil~H~d-~GM~~~~~V~~~~ 546 (562)
.+|.|-.+|+.+-=.. ..|-..+.|++.+
T Consensus 185 ~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 185 KPGTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCeEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 9999999999977443 4566666665543
No 84
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.69 E-value=11 Score=35.13 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=44.9
Q ss_pred EEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCC
Q 036540 215 AMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMD 294 (562)
Q Consensus 215 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~ 294 (562)
.+.++.|+.+||++.... -.|.|.+.+...+ +..-||..-.+.+++++ +|.|...|..++.
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~~-~G~y~g~C~e~CG 177 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLK----------------MDAIPGRINHLFFCPDR-HGVFVGYCSELCG 177 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCce----------------eecCCCceEEEEEEcCC-CEEEEEEeehhhC
Confidence 488999999999986554 4455555443332 34459999999999888 7999999986543
No 85
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=71.07 E-value=30 Score=35.64 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=42.9
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEee
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARP 291 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~ 291 (562)
..+++++|+ ++|.+.|.+. .. ++|.++. |..+ ....=.|+||.+..+.+.+ . ||+|.+.|..
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~-~~-------~Efe~~~--~~~v---v~e~EnIaPG~s~~l~~~L-~-pGtY~~~C~~ 105 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQ-KA-------LEWEILK--GVMV---VEERENIAPGFSQKMTANL-Q-PGEYDMTCGL 105 (375)
T ss_pred CceeeCCCC-EEEEEEeCCC-Cc-------ceEEeec--cccc---cccccccCCCCceEEEEec-C-CceEEeecCc
Confidence 579999996 8999999983 33 4455542 2211 0012388999888887776 3 7999999953
No 86
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=70.97 E-value=11 Score=35.95 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=45.5
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+||++..... . |.|.| |.-.-.+..-||..-.+-+++++ +|.|...|..++
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--i-------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~~-~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--M-------TSFWI---------PQLGGQKYAMTGMTMNWYLQADQ-VGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--h-------hhhhc---------hhhCceeecCCCceEEEEEEeCC-CEEEEEEehhhc
Confidence 35889999999999877663 2 55555 33333345559999999999998 799999998654
No 87
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=66.96 E-value=19 Score=34.52 Aligned_cols=61 Identities=7% Similarity=0.131 Sum_probs=45.6
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+||++.+.. -.|.|.+.+...+ +..-||..-.+.+++++ ||.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~ts~D--ViHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~~-~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VIHSWTVPSLGVK----------------VDAIPGRLNQLSFEPKR-PGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cccceeccccCce----------------eECCCCcceeEEEEeCC-CEEEEEECcccc
Confidence 4589999999999998855 3455555443333 34458999999999988 799999998654
No 88
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=66.84 E-value=12 Score=29.00 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=26.7
Q ss_pred ecCCE--EEEEEEeCCCCC---ceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEe----CCCCCceE
Q 036540 66 REGDR--VLINVTNHAQYN---MSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNV----TGQRGTLW 129 (562)
Q Consensus 66 ~~Gd~--v~i~~~N~l~~~---~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~----~~~~Gt~w 129 (562)
++|+. +.++|.|....+ .++-+- .+.+|.......+-..|+||++.+..|.+ +-.+|+|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 45664 557778887543 233321 13455522111122369999999888888 22367753
No 89
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=66.45 E-value=26 Score=31.37 Aligned_cols=61 Identities=5% Similarity=0.067 Sum_probs=43.2
Q ss_pred EEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCC
Q 036540 215 AMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMD 294 (562)
Q Consensus 215 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~ 294 (562)
.+.+..|+.+||++..+. -.|.|.+.....++ ..-||..-.+.+.++. +|.|+..|..++.
T Consensus 74 ~LvLP~g~~Vr~~lTS~D--VIHSF~VP~lgvK~----------------DavPGr~n~l~~~~~~-~G~y~gqCsElCG 134 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD--VIHSWSVPSLGIKA----------------DAIPGRLHKINTFILR-EGVFYGQCSEMCG 134 (162)
T ss_pred CEEEeCCCEEEEEEEeCc--cceeeeccccCcee----------------eccCCceEEEEEecCC-CeEEEEEcchhcC
Confidence 478999999999887665 34555555444333 3337877778888777 7999999986543
No 90
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=65.97 E-value=41 Score=26.70 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=41.1
Q ss_pred CceEEEe---cCCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEe
Q 036540 60 GPTIYIR---EGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWH 131 (562)
Q Consensus 60 gP~i~v~---~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH 131 (562)
.|.+.++ ....|+|+|.|....+..+........ .+. ..+..|+||++.+..|.+ ...--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~--~~~~~v~ag~~~~~~w~l--~~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGG--PWTYTVAAGQTVSLTWPL--AASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCC--CEEEEECCCCEEEEEEee--cCCCCcEE
Confidence 4666655 245899999999888777776552221 111 134679999999999987 23344554
No 91
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=63.91 E-value=15 Score=36.94 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=47.3
Q ss_pred EEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecCC
Q 036540 215 AMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFMD 294 (562)
Q Consensus 215 ~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~~ 294 (562)
.+.+..|+.+||++...... |.|.| |.-.-.+...||.+-.+.+.+++ +|.|...|..++.
T Consensus 152 eL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~~-~G~Y~G~CaEyCG 212 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIANE-PGTYDGISASYSG 212 (315)
T ss_pred cEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcCC-CEEEEEEChhhcC
Confidence 48899999999999887732 55555 44444456669999999999988 7999999986643
No 92
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.22 E-value=37 Score=32.55 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=54.1
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+.+.++.|+.|++.+.+. +..|.|.+-.... -+.+-||-...+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~----DViHsf~ip~~~~----------------------------k~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA----DVIHSWTVPSLGV----------------------------KVDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC----ccccceeccccCc----------------------------eeECCCCcceeEEEEe
Confidence 3457899999999999984 4556665543211 1233467777889999
Q ss_pred cCceeEEEEeehhHhH-hccceEEEEEec
Q 036540 517 DNPGVWFMHCHLELHT-MWGLKMAFVVEN 544 (562)
Q Consensus 517 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 544 (562)
+.||.+...|.-+-.. +..|-..++|.+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 9999999999987655 455666666654
No 93
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.17 E-value=84 Score=29.27 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=53.9
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
+.+.++.|+.+++.+... +..|.|.+-.... .+|. -||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d~---~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMDA---IPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eeec---CCCceEEEEEEcC
Confidence 346789999999999874 5567776543211 1233 3677788999999
Q ss_pred CceeEEEEeehhHhH-hccceEEEEEecC
Q 036540 518 NPGVWFMHCHLELHT-MWGLKMAFVVENG 545 (562)
Q Consensus 518 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 545 (562)
.+|.|-.-|.-+-=. +..|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999986543 3556677776653
No 94
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=58.89 E-value=33 Score=32.83 Aligned_cols=61 Identities=7% Similarity=0.101 Sum_probs=44.8
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+|+++.+.. -.|.|.+.+...+ +..-||..-.+.+.++. +|.|+..|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQIGFTITR-PGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--ccccccccccCcc----------------eecCCCceEEEEEEeCC-CEEEEEEChhhc
Confidence 3588999999999998855 3455555444333 23348999999999888 799999997554
No 95
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=58.84 E-value=90 Score=24.75 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=39.5
Q ss_pred EEecCcEEE--EEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEE-EeCCCceEEEEEEeCC-CCCeEEEEEee
Q 036540 217 EVESGKTYL--LRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAI-LIAPGQTTNVLVKADQ-SPSRYFMAARP 291 (562)
Q Consensus 217 ~v~~G~~~r--lRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v-~l~pgeR~dv~v~~~~-~~G~~~i~~~~ 291 (562)
.+..|+.++ +.+.|.|....-.+.+. +-.||..+ ....| .|.||+...+.+...- .+|.|.+.+..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 456676664 77889986554433333 33456533 44445 7899998888877765 46999888764
No 96
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=55.92 E-value=37 Score=32.47 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=43.5
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
-.+.+..|+.+||++.... -.|.|.+.....+ +..-||..-.+.+.+++ ||.|+..|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~lg~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED--VLHSWAVPSLGLK----------------TDAIPGRLNQTTLMSTR-PGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECc--ccccccccccccc----------------eecCCCceEEEEEecCC-cEEEEEECcccc
Confidence 3588999999999987665 3344444433322 33348999899998888 799999997554
No 97
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=55.61 E-value=56 Score=24.46 Aligned_cols=65 Identities=9% Similarity=0.262 Sum_probs=36.7
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEe
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAAR 290 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~ 290 (562)
..+++++|+++++.+-+.+. +..+.+...+|..+....... -..+..-.+.+.+.+ +|+|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 57899999999999877764 223555555554321110001 011223334455555 699999874
No 98
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=55.39 E-value=40 Score=27.18 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=40.4
Q ss_pred EEecCcEEEEEEE--ecCCCCeEEEEEcCc--ceEEEEeCCCccCceEEeEE-EeCCCceEEEEEEeCCCC--CeEEEEE
Q 036540 217 EVESGKTYLLRIV--NAALNDELFFAIAGH--NMTVVEIDAVYTKPFTTQAI-LIAPGQTTNVLVKADQSP--SRYFMAA 289 (562)
Q Consensus 217 ~v~~G~~~rlRli--N~~~~~~~~~~l~gh--~~~via~DG~~~~p~~~d~v-~l~pgeR~dv~v~~~~~~--G~~~i~~ 289 (562)
.-++||++.+|.+ +... ... ...+. .++|..-+|..+ ....+ .......++..+..++.+ |.|.|..
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~--~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFK--PPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCS--CESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccc--cccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 3679999999999 6652 100 11222 355555555422 22333 446788888888888753 9999998
Q ss_pred ee
Q 036540 290 RP 291 (562)
Q Consensus 290 ~~ 291 (562)
..
T Consensus 84 ~~ 85 (99)
T PF01835_consen 84 KT 85 (99)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 99
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=54.89 E-value=34 Score=32.79 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=44.0
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+|+++.... -.|.|.+.+...+ +..-||.+-.+.+.++. ||.|+..|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~~~~k----------------~da~PG~~~~~~~~~~~-~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED--VLHSWAVPALGVK----------------MDAVPGRLNQTAFIASR-PGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCc--cccceeccccCCc----------------cccCCCceEEEEEEeCC-ceEEEEEChhhc
Confidence 3588999999999887665 3444444443322 33448999999999888 799999997654
No 100
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.41 E-value=54 Score=31.36 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=43.7
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.++.|+.+|+++..+. -.|.|.+.....+ +..-||..-.+.+++++ +|.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vp~l~~k----------------~davPG~~~~~~~~~~~-~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQLNFLINR-PGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCc--hhhheeccccCCe----------------eecCCCceEEEEEEEcC-ceEEEEEeechh
Confidence 4588999999999887655 3444444433222 23348999999999888 799999998654
No 101
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=52.93 E-value=65 Score=32.70 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=14.4
Q ss_pred ccccCCCCeEEEEEEe
Q 036540 106 QCPIKTGNSYTYDFNV 121 (562)
Q Consensus 106 ~~~i~pG~~~~y~~~~ 121 (562)
+.||+|||+.+.+..+
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999887
No 102
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=51.36 E-value=16 Score=22.39 Aligned_cols=20 Identities=15% Similarity=-0.101 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHhhhcc
Q 036540 4 QHRRHLVLLLTIFYFLGFLS 23 (562)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~ 23 (562)
.+||++|+..++.++.+.+.
T Consensus 1 ~sRR~Flk~~~~~~a~~~~~ 20 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAAGLG 20 (29)
T ss_pred CchhhhHHHHHHHHHHHhcc
Confidence 47999998887665555553
No 103
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.13 E-value=72 Score=30.69 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=44.2
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+|+++.++. -.|.|.+.+...+ +..-||..-.+.+.++. +|.|+..|..++
T Consensus 144 n~lvlP~~~~v~~~itS~D--ViHsf~vp~lg~k----------------~daiPG~~~~~~~~~~~-~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VLHSFAVPSLSVK----------------IDAVPGRLNQTSFFIKR-PGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hhccccccccCce----------------eEccCCceEeEEEEeCC-CEEEEEEChhhc
Confidence 3588999999999998864 3444444443333 23448988888888888 799999997554
No 104
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.47 E-value=59 Score=31.19 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=43.7
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+|+++.... -.|.|.+.+...+ +..-||..-.+.+.++. +|.|...|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k----------------~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAED--VLHSWTVPALGVK----------------MDAVPGRLNQATFIISR-PGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcCc--ccccccccccCce----------------eEecCCceEEEEEEeCC-cEEEEEEchhhc
Confidence 4688999999999887655 3444444443333 23348888888888888 799999997554
No 105
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=48.95 E-value=58 Score=26.97 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCceEEecCccccCCCCCC-CCCcccccccCCCCeEEEEEEeCCCCCceEEecCchhhcccceeEEEEcC
Q 036540 72 LINVTNHAQYNMSIHWHGLKQYRNGWAD-GPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMP 149 (562)
Q Consensus 72 ~i~~~N~l~~~~siH~HG~~~~~~~~~D-Gv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~h~~~~~~Gl~G~iiV~~ 149 (562)
.|+++|.|.....|..|=-.-. .| |+ ..+.||+++.++|.. +-.|+--|.|+..........-+.|-.
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEe
Confidence 4889999954444444322211 22 22 468999999999985 556777777876541122344555543
No 106
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=48.62 E-value=1.4e+02 Score=26.76 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=50.3
Q ss_pred eeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEec
Q 036540 438 RLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRAD 517 (562)
Q Consensus 438 ~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 517 (562)
+.+.++.|..|++.+... +..|.|.+-.... -+.+-||-...+.|.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv----------------------------K~DavPGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGI----------------------------KADAIPGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCc----------------------------eeeccCCceEEEEEecC
Confidence 346789999999999874 4557765543211 12233666677889999
Q ss_pred CceeEEEEeehhHhHh-ccceEEEEEec
Q 036540 518 NPGVWFMHCHLELHTM-WGLKMAFVVEN 544 (562)
Q Consensus 518 npG~w~~HCHil~H~d-~GM~~~~~V~~ 544 (562)
.+|.|...|.-+-=.. ..|-..++|.+
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999998754222 34666665544
No 107
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=47.59 E-value=71 Score=30.87 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=44.2
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+||++.... -.|.|.+.....++ ..-||..-.+.+.+++ ||.|...|..++
T Consensus 151 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lgvK~----------------DaiPG~~n~~~~~~~~-~G~y~g~C~e~C 211 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD--VLHSFAVPSLGLKI----------------DAVPGRLNQTGFFIKR-PGVFYGQCSEIC 211 (240)
T ss_pred ceEEEecCCEEEEEEEcCC--cccceeecccCcee----------------ecCCCcceeEEEEcCC-CEEEEEEchhhc
Confidence 3588999999999886554 45555555544443 2337888888888887 799999998654
Q ss_pred C
Q 036540 294 D 294 (562)
Q Consensus 294 ~ 294 (562)
.
T Consensus 212 G 212 (240)
T MTH00023 212 G 212 (240)
T ss_pred C
Confidence 3
No 108
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.15 E-value=90 Score=29.85 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=43.4
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
-.+.+..|+.+|+++..+. -.|.|.+.....+ +..-||..-.+.+.++. ||.|+..|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~lg~K----------------~DavPG~~n~~~~~~~~-~G~y~g~CsE~C 200 (227)
T MTH00117 140 HRMVIPMESPIRILITAED--VLHSWAVPSLGVK----------------TDAVPGRLNQTSFITTR-PGVFYGQCSEIC 200 (227)
T ss_pred ceEEEecCceEEEEEEecc--hhhcccccccCce----------------eEecCCceEEEEEEEcc-cceEEEEecccc
Confidence 3588999999999887665 3344444433322 23348999999999888 799999998654
No 109
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=44.58 E-value=92 Score=31.78 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.1
Q ss_pred cccCCCCeEEEEEEe
Q 036540 107 CPIKTGNSYTYDFNV 121 (562)
Q Consensus 107 ~~i~pG~~~~y~~~~ 121 (562)
.||+|||+.+.+..+
T Consensus 319 ~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 319 SPIAPGETRTLTVEA 333 (381)
T ss_dssp S-B-TT-EEEEEEEE
T ss_pred CCcCCCceEEEEEEe
Confidence 589999999999988
No 110
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=43.76 E-value=1.6e+02 Score=23.23 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=35.4
Q ss_pred cEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEe
Q 036540 222 KTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAAR 290 (562)
Q Consensus 222 ~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~ 290 (562)
..++|.|.|.| .....|.+... .. ......++.|.+|++.++.+.....-|-|-+..+
T Consensus 20 g~l~l~l~N~g-~~~~~~~v~~~-------~y---~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPG-SAAVTFTVYDN-------AY---GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCC-CCcEEEEEEeC-------Cc---CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 47899999998 44444444331 11 1122356777888888888777554466666554
No 111
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.52 E-value=70 Score=30.57 Aligned_cols=61 Identities=7% Similarity=0.156 Sum_probs=43.0
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+||++.... -.|.|.+.....+ +..-||..-.+.+.+++ +|.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vP~lg~k----------------~daiPG~~n~~~~~~~~-~G~~~g~CsE~C 200 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD--VLHSWTLPSLGLK----------------MDAVPGRLNQLAFLSSR-PGSFYGQCSEIC 200 (225)
T ss_pred ceEEEecCCEEEEEEEeCC--hhhcccccccccc----------------ccCCCCeEEEEEEEcCC-CEEEEEEccccc
Confidence 4588999999999987666 3444444332222 23338888888898888 799999998654
No 112
>PRK13202 ureB urease subunit beta; Reviewed
Probab=42.51 E-value=76 Score=26.00 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=38.6
Q ss_pred eEEEecC--CEEEEEEEeCCCCCc--eEEecCccccCCCCCCC---------CCcccccccCCCCeEEEEEE
Q 036540 62 TIYIREG--DRVLINVTNHAQYNM--SIHWHGLKQYRNGWADG---------PAYITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 62 ~i~v~~G--d~v~i~~~N~l~~~~--siH~HG~~~~~~~~~DG---------v~~~t~~~i~pG~~~~y~~~ 120 (562)
.|.+++| +++.|.|.|..+++. .-|+|=..+...---|= .|.-|..-..||++.+.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 4899999 599999999997764 45777555443311121 22223455788888877764
No 113
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.43 E-value=95 Score=29.74 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=43.6
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+|+++.... -.|.|.+.....++ ..-||..-.+.+.+++ +|.|...|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k~----------------daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD--VLHSWAVPSLGVKM----------------DAVPGRLNQTTFFISR-TGLFYGQCSEIC 200 (229)
T ss_pred ceEEEecCeEEEEEEEECC--ccccccccccCcee----------------ecCCCceEEEEEEcCC-CEEEEEEccccc
Confidence 3588999999998886655 44555554443332 2337888888888887 799999998654
Q ss_pred C
Q 036540 294 D 294 (562)
Q Consensus 294 ~ 294 (562)
.
T Consensus 201 G 201 (229)
T MTH00038 201 G 201 (229)
T ss_pred C
Confidence 3
No 114
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.13 E-value=85 Score=30.06 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=43.4
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
-.+.+..|+.+||++.... -.|.|.+.+..+++ ..-||..-.+.+.+++ +|.|+..|..++
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vP~lg~k~----------------da~PG~~n~~~~~~~~-~G~~~g~C~e~C 200 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED--VLHSWAVPSLGIKT----------------DAIPGRLNQTSFIASR-PGVYYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEecc--ccccccccccCceE----------------EccCCcceeEEEEeCC-cEEEEEEChhhc
Confidence 3588999999999987655 44555554443332 3338888888888887 799999997554
No 115
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=41.93 E-value=91 Score=29.80 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=52.0
Q ss_pred eEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecC
Q 036540 439 LSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADN 518 (562)
Q Consensus 439 ~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn 518 (562)
-+.++.|+.|++.+.+. +..|.| +|-+-+ ..+|.+ ||-...+.|++|.
T Consensus 140 el~lP~g~pV~~~ltS~----DViHSF-------~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSN----SVMNSF-------FIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEEC----chhhhh-------hhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 36889999999999884 344555 443322 124444 6777789999999
Q ss_pred ceeEEEEeehhHhH-hccceEEEEEecC
Q 036540 519 PGVWFMHCHLELHT-MWGLKMAFVVENG 545 (562)
Q Consensus 519 pG~w~~HCHil~H~-d~GM~~~~~V~~~ 545 (562)
||.|.-.|--.-=. +..|...+.|.+.
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999765422 3567777776653
No 116
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=40.47 E-value=23 Score=26.54 Aligned_cols=15 Identities=27% Similarity=0.098 Sum_probs=10.7
Q ss_pred cchhHHHHHHHHHHH
Q 036540 3 MQHRRHLVLLLTIFY 17 (562)
Q Consensus 3 ~~~~r~~~~~~~~~~ 17 (562)
..+||+||+++++.+
T Consensus 8 ~~sRR~Flk~lg~~a 22 (66)
T TIGR02811 8 DPSRRDLLKGLGVGA 22 (66)
T ss_pred CccHHHHHHHHHHHH
Confidence 357999998666533
No 117
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.88 E-value=1e+02 Score=29.54 Aligned_cols=61 Identities=7% Similarity=0.076 Sum_probs=42.6
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+|+++..+. -.|.|.+..-..++ | .-||..-.+.+.++. ||.|..+|...+
T Consensus 143 n~l~lP~~~~v~~~itS~D--ViHSf~vP~lg~K~-------------D---avPGr~n~~~~~~~~-~G~y~g~CsE~C 203 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD--VIHSWALPSLSIKM-------------D---AMSGILSTLCYSFPM-PGVFYGQCSEIC 203 (231)
T ss_pred CceEeecCcEEEEEEEeCc--ccccccccccCcee-------------e---ccCCceEEEEEEEcC-ceEEEEEehhhc
Confidence 3478999999999987665 34444444333322 2 237888888888887 799999997544
No 118
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=39.05 E-value=23 Score=28.84 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=26.5
Q ss_pred EEEEcCcCCCceEEEecCCEEEEEEEeCCCC
Q 036540 51 IVTVNGMFPGPTIYIREGDRVLINVTNHAQY 81 (562)
Q Consensus 51 ~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~ 81 (562)
-..+||+.-=|.=.|+.||.|+|++.|..-.
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 3679998877899999999999999998643
No 119
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.77 E-value=48 Score=28.51 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.0
Q ss_pred ccccCCCCeEEEE
Q 036540 106 QCPIKTGNSYTYD 118 (562)
Q Consensus 106 ~~~i~pG~~~~y~ 118 (562)
|..|.||++|+|.
T Consensus 73 qP~L~PGe~F~Y~ 85 (127)
T PRK05461 73 QPVLAPGESFEYT 85 (127)
T ss_pred CceECCCCCeEEe
Confidence 3458999988875
No 120
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.19 E-value=59 Score=28.98 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=34.7
Q ss_pred ccCceEEEEEEEEEEEeecCCceeeEEEEcCc-CCCceEEEecCCEEEEEEEeCCCCCceEEecCcc
Q 036540 26 ADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGM-FPGPTIYIREGDRVLINVTNHAQYNMSIHWHGLK 91 (562)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~-~pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~ 91 (562)
+......|-++.++...... .....+.+-|. .+|-..|-..+-.|+.+++ +......++..|+-
T Consensus 29 al~~n~~yF~tpsEv~~~~~-~~~~~~RlGG~V~~GSv~r~~~~~~v~F~vt-D~~~~v~V~Y~Gil 93 (155)
T PRK13159 29 ALQRNMSYLFTPSQVRAGAA-AGYQQFRLGGMVKAGSIQRAADSLKVSFTVI-DKNAATQVEYTGIL 93 (155)
T ss_pred HhhhCceEEECHHHHhcCCc-ccCCeEEEccEEecCcEEEcCCCcEEEEEEE-cCCcEEEEEEccCC
Confidence 45555566666665432211 22355566665 3666666322335666666 33556677888863
No 121
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.94 E-value=89 Score=29.86 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=42.8
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+||++..+. -.|.|.+..-..+. | .-||..-.+.+++++ ||.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vP~l~~K~-------------D---aiPG~~n~~~~~~~~-~G~y~g~CsE~C 200 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD--VLHSWTVPSLGVKI-------------D---AVPGRLNQVGFFINR-PGVFYGQCSEIC 200 (226)
T ss_pred ceEEEecCCEEEEEEecCc--cccceeccccCccc-------------c---CCCCcEEEEEEEcCC-CEEEEEEChhhc
Confidence 4588999999998886554 44455554433332 2 237888888888888 799999997554
No 122
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=36.85 E-value=2e+02 Score=27.24 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=60.9
Q ss_pred ecCCceeeEEEEcCcCCCceEEEecCCEEEEEEEeCCCCC-----ceEEecCccccCCCCCCCCCcccccccCCCCeEEE
Q 036540 43 SRLCNSKPIVTVNGMFPGPTIYIREGDRVLINVTNHAQYN-----MSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTY 117 (562)
Q Consensus 43 ~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~~~-----~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y 117 (562)
+++|..--.+++.|-+-.-.|.|+.|..+|+++.=+.+-+ .+.-+|+.. .++-+|-...
T Consensus 79 a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ssI 142 (272)
T COG4633 79 APNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQVSSI 142 (272)
T ss_pred ccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCceeEE
Confidence 3444333346666666547899999999999999887543 233344333 2345777778
Q ss_pred EEEeCCCCCceEEecCchhhcccceeEEEEcCCCCC
Q 036540 118 DFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKERT 153 (562)
Q Consensus 118 ~~~~~~~~Gt~wyH~h~~~~~~Gl~G~iiV~~~~~~ 153 (562)
+|+ +.+.|.|-+-|... =|.|.++|+.....
T Consensus 143 e~T-~~s~ge~af~cgmn----m~~G~~~vet~~~~ 173 (272)
T COG4633 143 EFT-PISKGEYAFLCGMN----MFRGNIQVETLTGK 173 (272)
T ss_pred Eec-cccccchhhhcchh----hccCeeEEEecCCc
Confidence 887 48899998877654 36789999876643
No 123
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.37 E-value=1.7e+02 Score=27.95 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=52.4
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+-+.++.|+.|++.+.+. +..|.|.+-+... -+..-||-...+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~----------------------------k~daiPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGV----------------------------KVDAVPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeC----CccccccccccCc----------------------------ceecCCCceEEEEEEe
Confidence 3457889999999999984 4556665443221 1223367777888999
Q ss_pred cCceeEEEEeehhHhHh-ccceEEEEEec
Q 036540 517 DNPGVWFMHCHLELHTM-WGLKMAFVVEN 544 (562)
Q Consensus 517 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 544 (562)
+.||.+..-|.-+-... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 99999999998766553 45555555544
No 124
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=35.28 E-value=69 Score=26.93 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=30.7
Q ss_pred EEEEEeCCCCC---ceEEecCcc-----ccCCCCCCCCCcccccccCCCCeEEEEEEe--CCCCCc
Q 036540 72 LINVTNHAQYN---MSIHWHGLK-----QYRNGWADGPAYITQCPIKTGNSYTYDFNV--TGQRGT 127 (562)
Q Consensus 72 ~i~~~N~l~~~---~siH~HG~~-----~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~--~~~~Gt 127 (562)
.|++.|....+ .+=|||=-. .... -+||-| -|..|+||++|+|.=-. +.+.|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~--G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVE--GEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEE--cCceec-cccccCCCCceEEcCCcCccCCcce
Confidence 36677776554 356886222 1111 344433 26679999999997433 344555
No 125
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.09 E-value=1.7e+02 Score=28.18 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=52.3
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+.+.++.|+.|++.+... +..|.|.+-.-.. .+|.+ ||-...+.|++
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgv-------------------------K~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGL-------------------------KIDAV---PGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCc-------------------------eeecC---CCcceeEEEEc
Confidence 3457899999999999874 5567776543211 12332 55566788999
Q ss_pred cCceeEEEEeehhHhH-hccceEEEEEec
Q 036540 517 DNPGVWFMHCHLELHT-MWGLKMAFVVEN 544 (562)
Q Consensus 517 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 544 (562)
+.||.+.-.|.-+--. +.-|-..++|.+
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVS 226 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 9999999999877655 345555565554
No 126
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=34.68 E-value=2.2e+02 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=15.1
Q ss_pred EecCcEEEEEEEecCCCCeEEEEE
Q 036540 218 VESGKTYLLRIVNAALNDELFFAI 241 (562)
Q Consensus 218 v~~G~~~rlRliN~~~~~~~~~~l 241 (562)
.+.||+++|++-..-....+-+.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 567888988888755333333444
No 127
>PRK13202 ureB urease subunit beta; Reviewed
Probab=33.67 E-value=1.4e+02 Score=24.44 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=43.4
Q ss_pred EEEEecC--cEEEEEEEecCCCCeEEEEEcCcceEEE--------EeCCCccCceEEeEEEeCCCceEEEEEEeCC
Q 036540 215 AMEVESG--KTYLLRIVNAALNDELFFAIAGHNMTVV--------EIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 215 ~~~v~~G--~~~rlRliN~~~~~~~~~~l~gh~~~vi--------a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
.+.+.+| +++++++.|.| .+++.+.-|=|-+++- ++=|..+.=..-..+..-|||.-+|.+..-.
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~g 86 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLG 86 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEcc
Confidence 3778888 58899999999 8888777666655542 1112111111235788889999998886544
No 128
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=33.21 E-value=2.2e+02 Score=21.70 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=30.0
Q ss_pred ecCcEE--EEEEEecCCCC--eEEEEEcC-cceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCC----CCCeEEEEE
Q 036540 219 ESGKTY--LLRIVNAALND--ELFFAIAG-HNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ----SPSRYFMAA 289 (562)
Q Consensus 219 ~~G~~~--rlRliN~~~~~--~~~~~l~g-h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~----~~G~~~i~~ 289 (562)
.+|+.+ ++.+.|.+... ...+.+.. .-|. +.. .|.... .|.||+...+.++..- .+|.|.|..
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~-----~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~ 73 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSA-----SPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTV 73 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---------EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccC-----Cccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEE
Confidence 455544 57788887432 34455442 1222 111 233333 8899977666665543 358999876
Q ss_pred e
Q 036540 290 R 290 (562)
Q Consensus 290 ~ 290 (562)
.
T Consensus 74 ~ 74 (78)
T PF10633_consen 74 T 74 (78)
T ss_dssp E
T ss_pred E
Confidence 5
No 129
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=32.68 E-value=1.4e+02 Score=24.40 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=38.2
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--eEEecCccccCCCCCCC---------CCcccccccCCCCeEEEEEE
Q 036540 62 TIYIREG-DRVLINVTNHAQYNM--SIHWHGLKQYRNGWADG---------PAYITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 62 ~i~v~~G-d~v~i~~~N~l~~~~--siH~HG~~~~~~~~~DG---------v~~~t~~~i~pG~~~~y~~~ 120 (562)
.|++++| +++.|.|+|..+++. .-|+|=..+...-.-|= .|.-|.....||++.+.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4888888 789999999998764 45777555433211121 22223455788888887764
No 130
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=32.52 E-value=3e+02 Score=23.46 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=42.2
Q ss_pred EEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCcc-------CceEEeEEEeCCCceEEEEEEeCCC
Q 036540 216 MEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYT-------KPFTTQAILIAPGQTTNVLVKADQS 281 (562)
Q Consensus 216 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-------~p~~~d~v~l~pgeR~dv~v~~~~~ 281 (562)
+++..-..|+|++.. .....+.|+|..+ +..++..- .+....++.|..|++|+|.|...+.
T Consensus 54 ~~~~~~G~y~f~~~~---~d~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 54 FKPPETGTYTFSLTS---DDGARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEESSSEEEEEEEEE---SSEEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EecccCceEEEEEEe---cccEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 677666789999983 4457788888765 45554422 3566778899999999999987763
No 131
>PRK13203 ureB urease subunit beta; Reviewed
Probab=31.72 E-value=1.5e+02 Score=24.33 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=37.9
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--eEEecCccccCCCCCCC---------CCcccccccCCCCeEEEEEE
Q 036540 62 TIYIREG-DRVLINVTNHAQYNM--SIHWHGLKQYRNGWADG---------PAYITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 62 ~i~v~~G-d~v~i~~~N~l~~~~--siH~HG~~~~~~~~~DG---------v~~~t~~~i~pG~~~~y~~~ 120 (562)
.|++++| +++.|+|+|..+++. .-|+|=..+...-.-|= .|.=|.....||++.+.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4788888 789999999998764 45777555433211121 22223455788888877764
No 132
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=31.35 E-value=2.3e+02 Score=24.02 Aligned_cols=68 Identities=26% Similarity=0.430 Sum_probs=38.7
Q ss_pred EEEcCcCCCceEEEecCCEEEEEEEeCCC---CCceEEec----Ccccc-CCCCCCCCCcccccccCCCCeEEEEEEe
Q 036540 52 VTVNGMFPGPTIYIREGDRVLINVTNHAQ---YNMSIHWH----GLKQY-RNGWADGPAYITQCPIKTGNSYTYDFNV 121 (562)
Q Consensus 52 ~~~Ng~~pgP~i~v~~Gd~v~i~~~N~l~---~~~siH~H----G~~~~-~~~~~DGv~~~t~~~i~pG~~~~y~~~~ 121 (562)
..++|-- +..=.++.|..+.+.+.=..+ .......| |+..+ +.+..||=-+ ..|||.+|++++|.+..
T Consensus 12 V~V~~C~-~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 12 LEVDGCS-GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred EEeCCCC-CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 3445542 344567778877776653332 22233333 43333 2222566422 37999999999999876
No 133
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=30.80 E-value=1.5e+02 Score=24.80 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=27.1
Q ss_pred EEEEEEEecCCCC-eEEEEEcCc-ceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCC
Q 036540 223 TYLLRIVNAALND-ELFFAIAGH-NMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 223 ~~rlRliN~~~~~-~~~~~l~gh-~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
.|+++|+|.+... .+.+.+.|. .+++. ...+.+.|.||+..++-|....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEEE
Confidence 5889999999443 456666663 23321 1246788889988877665554
No 134
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=30.38 E-value=86 Score=27.78 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=38.4
Q ss_pred cccCceEEEEEEEEEEEeecCCceeeEEEEcCcC-CCceEEEecCCEEEEEEEeCCCCCceEEecCccccCCCCCCCC
Q 036540 25 PADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMF-PGPTIYIREGDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGP 101 (562)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~-pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv 101 (562)
.+......|-++.++...... ...+.+.+.|.+ +|..-+. .|..++.++.-. .....++..|.. |..+.+|.
T Consensus 28 ~a~~~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~l--Pd~F~eg~ 100 (148)
T PRK13254 28 YALRQNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGIL--PDLFREGQ 100 (148)
T ss_pred HHHHhCCceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCCC--CccccCCC
Confidence 344445556655554432221 223344555554 4433333 777888888765 556678888864 22335554
No 135
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=30.08 E-value=94 Score=32.90 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=12.5
Q ss_pred ccCCCCeEEEEEEe
Q 036540 108 PIKTGNSYTYDFNV 121 (562)
Q Consensus 108 ~i~pG~~~~y~~~~ 121 (562)
.+.|++.+-|+|++
T Consensus 107 gL~P~~~yfYRf~~ 120 (522)
T COG3540 107 GLSPDQDYFYRFKA 120 (522)
T ss_pred CCCCCceEEEEEee
Confidence 47899999999998
No 136
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=29.92 E-value=1.8e+02 Score=27.53 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=50.9
Q ss_pred EEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEecCc
Q 036540 440 SKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRADNP 519 (562)
Q Consensus 440 ~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnp 519 (562)
+.++.|+.|++.+.+. +.-|.| +|=+-+ ..+|.+ ||-...+.|+++.|
T Consensus 132 l~iP~g~~v~~~ltS~----DViHsf-------~vP~l~------------------~k~dai---PG~~~~~~~~~~~~ 179 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSA----DTMTSF-------WIPQLG------------------GQKYAM---TGMTMNWYLQADQV 179 (217)
T ss_pred EEEECCCEEEEEEECC----chhhhh-------hchhhC------------------ceeecC---CCceEEEEEEeCCC
Confidence 6789999999999874 344544 443221 124444 67788899999999
Q ss_pred eeEEEEeehhHhH-hccceEEEEEecC
Q 036540 520 GVWFMHCHLELHT-MWGLKMAFVVENG 545 (562)
Q Consensus 520 G~w~~HCHil~H~-d~GM~~~~~V~~~ 545 (562)
|.|--.|--+-=. +.-|...++|.++
T Consensus 180 G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 180 GTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEEEEehhhcCccccCCeEEEEEeCH
Confidence 9999999754322 3457777766654
No 137
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.88 E-value=74 Score=28.05 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.6
Q ss_pred cccCCCCeEEEEEEe---CCCCCceEEecCc
Q 036540 107 CPIKTGNSYTYDFNV---TGQRGTLWWHAHI 134 (562)
Q Consensus 107 ~~i~pG~~~~y~~~~---~~~~Gt~wyH~h~ 134 (562)
.||+||++++..+.. +...|+|.|++-.
T Consensus 97 ~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 97 EPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 689999999999943 5567999998754
No 138
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=28.80 E-value=75 Score=25.50 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEEEEecCCCCeEEEEEcCcceEEEEeCCCcc--C--ceEEeEEEeCCCceEEE
Q 036540 223 TYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYT--K--PFTTQAILIAPGQTTNV 274 (562)
Q Consensus 223 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~--~--p~~~d~v~l~pgeR~dv 274 (562)
.|++||-|.+.. ++.|-...+.|...||... + .+.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 578999999854 4666667777776666421 0 01112336778885543
No 139
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=28.74 E-value=58 Score=21.89 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=7.7
Q ss_pred chhHHHHHHHHH
Q 036540 4 QHRRHLVLLLTI 15 (562)
Q Consensus 4 ~~~r~~~~~~~~ 15 (562)
.+||+||..++.
T Consensus 9 ~~RRdFL~~at~ 20 (41)
T PF10399_consen 9 PTRRDFLTIATS 20 (41)
T ss_dssp -HHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 578999954443
No 140
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.36 E-value=1.9e+02 Score=23.62 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=37.4
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--eEEecCccccCCCCCCC---------CCcccccccCCCCeEEEEEE
Q 036540 62 TIYIREG-DRVLINVTNHAQYNM--SIHWHGLKQYRNGWADG---------PAYITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 62 ~i~v~~G-d~v~i~~~N~l~~~~--siH~HG~~~~~~~~~DG---------v~~~t~~~i~pG~~~~y~~~ 120 (562)
.|++++| +++.|.|.|..+++. .-|+|=..+...-.-|= .|.=|.....||++.+.+..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 4788888 689999999998764 45777655443311121 22223345778887777664
No 141
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=28.23 E-value=1.3e+02 Score=25.83 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=30.8
Q ss_pred EEEEEEEecCCCCeEEEEEcCcceEEEEeCCCcc----CceEEeEEEeCCCceEEE
Q 036540 223 TYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYT----KPFTTQAILIAPGQTTNV 274 (562)
Q Consensus 223 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~----~p~~~d~v~l~pgeR~dv 274 (562)
.|++||.|.+.. ++.|-...|.+...||... ..+.-..=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 578999998732 4677778888887777532 112223336777775543
No 142
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=27.64 E-value=1.1e+02 Score=20.17 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.7
Q ss_pred eEEEEecCcEEEEEEEecC
Q 036540 214 FAMEVESGKTYLLRIVNAA 232 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~ 232 (562)
.......|+.||||+..++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 5677888999999998765
No 143
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.44 E-value=1.6e+02 Score=28.84 Aligned_cols=61 Identities=8% Similarity=0.094 Sum_probs=41.8
Q ss_pred eEEEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeCCCCCeEEEEEeecC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKADQSPSRYFMAARPFM 293 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~~~i~~~~~~ 293 (562)
..+.+..|+.+|+++..+. -.|.|.+....+++ ..-||..-.+.+.+++ +|.|...|..++
T Consensus 174 n~lvlP~~~~v~~~ltS~D--ViHSf~vP~lgvK~----------------DaiPGr~n~~~~~~~~-~G~y~g~CsE~C 234 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD--VLHSWTVPSLAVKM----------------DAVPGRINETGFLIKR-PGIFYGQCSEIC 234 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc--cccceecccccCcc----------------cCCCCceeeEEEEcCC-cEEEEEEcchhc
Confidence 3578888988888876544 44555554433332 2237888888888888 799999998654
No 144
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=25.92 E-value=3e+02 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCCCceeECCccCCCCCCCCCcceEEEEecCcEEEEEEEecC
Q 036540 191 QTSDAHTINGKSGPLFPCSEKHTFAMEVESGKTYLLRIVNAA 232 (562)
Q Consensus 191 ~~~~~~~iNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~ 232 (562)
.++.+..+||++ .....+.|+.|++.++--+
T Consensus 15 ~~G~W~Sv~~~P-----------~v~I~r~g~~Y~vti~~~~ 45 (95)
T PF12992_consen 15 ICGEWESVNGKP-----------DVTIYRNGGSYKVTITYRS 45 (95)
T ss_pred eEEEeEccCCCC-----------CEEEEECCCeEEEEEEEEc
Confidence 345677888874 4566778899999886654
No 145
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.74 E-value=2.6e+02 Score=26.84 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=51.5
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+-+.++.|+.|++.+... +..| .|+|-+-| ...|. -||....+-|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViH-------sf~ip~~~------------------~k~da---~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAE----DVLH-------SWAVPALG------------------VKMDA---VPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeC----cccc-------ceeccccC------------------Ccccc---CCCceEEEEEEe
Confidence 3447889999999999874 3344 45554432 11233 367778889999
Q ss_pred cCceeEEEEeehhHhH-hccceEEEEEec
Q 036540 517 DNPGVWFMHCHLELHT-MWGLKMAFVVEN 544 (562)
Q Consensus 517 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 544 (562)
+.||.+-..|.-+--. +..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEEC
Confidence 9999999999875533 355666666554
No 146
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=25.66 E-value=4.1e+02 Score=22.46 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=37.1
Q ss_pred EEEecCcEEEEEEEecCCCCeEEEEEcCcceEEEEeCCCcc-CceEEeEEEeCCCceEEEEEEeCCC
Q 036540 216 MEVESGKTYLLRIVNAALNDELFFAIAGHNMTVVEIDAVYT-KPFTTQAILIAPGQTTNVLVKADQS 281 (562)
Q Consensus 216 ~~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-~p~~~d~v~l~pgeR~dv~v~~~~~ 281 (562)
+++.....|+|.+.. .....+.|+|.. |+..++..- .+.....+.|..|++|.|.|...+.
T Consensus 52 i~~~~~G~y~f~~~~---~~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITS---DDGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEc---CCcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 555555568888843 344567788753 344333221 2334456888888888888877664
No 147
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=25.09 E-value=2.5e+02 Score=22.95 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=42.1
Q ss_pred EEEecC-cEEEEEEEecCCCCeEEEEEcCcceEEE--------EeCCCccCceEEeEEEeCCCceEEEEEEeCC
Q 036540 216 MEVESG-KTYLLRIVNAALNDELFFAIAGHNMTVV--------EIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 216 ~~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~vi--------a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
+.+.+| ++.++.+.|.+ .+++.+--|=|-+++- ++-|..+.=-.-..+..-|||.-+|.+..-.
T Consensus 13 I~ln~gr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~g 85 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTG-DRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIG 85 (101)
T ss_pred EEeCCCCcEEEEEEEeCC-CcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEcc
Confidence 566666 67789999999 8888777666655542 1112212111235788899999999886544
No 148
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.06 E-value=3.2e+02 Score=26.14 Aligned_cols=76 Identities=11% Similarity=0.195 Sum_probs=50.7
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+.+.++.|+.|++.+... +..|.| +|-+-| ...|. -||-...+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf-------~ip~lg------------------~k~da---iPG~~~~~~~~~ 186 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSE----DVLHSW-------AVPSLG------------------LKTDA---IPGRLNQTTLMS 186 (227)
T ss_pred cceEEecCCCEEEEEEEEC----cccccc-------cccccc------------------cceec---CCCceEEEEEec
Confidence 3457889999999999884 344544 333222 11233 367777889999
Q ss_pred cCceeEEEEeehhHhHh-ccceEEEEEec
Q 036540 517 DNPGVWFMHCHLELHTM-WGLKMAFVVEN 544 (562)
Q Consensus 517 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 544 (562)
+.||.+..-|.-+-... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 99999999998866553 44555555543
No 149
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.86 E-value=2.8e+02 Score=26.42 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=51.2
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+.+.++.|+.|++.+... +..|.|.+- +-+ ..+|.+ ||-...+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP-------~l~------------------~K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAA----DVLHSWTVP-------SLG------------------VKIDAV---PGRLNQVGFFI 186 (226)
T ss_pred CceEEEecCCEEEEEEecC----ccccceecc-------ccC------------------ccccCC---CCcEEEEEEEc
Confidence 3557899999999999874 455665443 221 124544 56677889999
Q ss_pred cCceeEEEEeehhHhHh-ccceEEEEEec
Q 036540 517 DNPGVWFMHCHLELHTM-WGLKMAFVVEN 544 (562)
Q Consensus 517 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 544 (562)
+.||.+.--|--+-=.. .-|-..++|.+
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 187 NRPGVFYGQCSEICGANHSFMPIVVEAIS 215 (226)
T ss_pred CCCEEEEEEChhhcCcCcCCCeEEEEEeC
Confidence 99999999998765433 34555555543
No 150
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=24.49 E-value=3.7e+02 Score=21.47 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=36.9
Q ss_pred EEecCcEE--EEEEEecCCCCeEEEEEcCc-----ceEEEEeCCCccCceEEeEEEeCCCceEEEEEEeC-C-CCCeEEE
Q 036540 217 EVESGKTY--LLRIVNAALNDELFFAIAGH-----NMTVVEIDAVYTKPFTTQAILIAPGQTTNVLVKAD-Q-SPSRYFM 287 (562)
Q Consensus 217 ~v~~G~~~--rlRliN~~~~~~~~~~l~gh-----~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~-~-~~G~~~i 287 (562)
.+..|++| .+.|.|.| .....|++... .|.+ +| ..-.|.||+..++.|.+. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s-~~p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTS-SIPARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECC-CCCEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 45667666 49999999 45555555421 2222 12 133699999999999888 3 3466543
No 151
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.46 E-value=61 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.4
Q ss_pred eeeEEEEcCcCCCceEEEecCCEEEEE
Q 036540 48 SKPIVTVNGMFPGPTIYIREGDRVLIN 74 (562)
Q Consensus 48 ~~~~~~~Ng~~pgP~i~v~~Gd~v~i~ 74 (562)
+...+.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 356789999988899999999998874
No 152
>PRK13198 ureB urease subunit beta; Reviewed
Probab=24.11 E-value=2.1e+02 Score=25.29 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=38.2
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--eEEecCccccCCCCCC-----C----CCcccccccCCCCeEEEEEE
Q 036540 62 TIYIREG-DRVLINVTNHAQYNM--SIHWHGLKQYRNGWAD-----G----PAYITQCPIKTGNSYTYDFN 120 (562)
Q Consensus 62 ~i~v~~G-d~v~i~~~N~l~~~~--siH~HG~~~~~~~~~D-----G----v~~~t~~~i~pG~~~~y~~~ 120 (562)
.|.+++| +++.|.|.|..+++. .-|+|=..+...---| | .|.-|.....||++.+.+..
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 4889998 799999999997764 4577755543321111 1 22223455788888877764
No 153
>PRK13205 ureB urease subunit beta; Reviewed
Probab=23.96 E-value=2.2e+02 Score=25.15 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEeCCCCCceE--EecCccccCCCCCCC---------CCcccccccCCCCeEEEEE
Q 036540 63 IYIREG-DRVLINVTNHAQYNMSI--HWHGLKQYRNGWADG---------PAYITQCPIKTGNSYTYDF 119 (562)
Q Consensus 63 i~v~~G-d~v~i~~~N~l~~~~si--H~HG~~~~~~~~~DG---------v~~~t~~~i~pG~~~~y~~ 119 (562)
|.+++| +++.|.|+|..+++.-+ |+|=..+.+.--.|= .|.=|.....||++.+.+.
T Consensus 13 IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~L 81 (162)
T PRK13205 13 LTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNL 81 (162)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEE
No 154
>PRK13204 ureB urease subunit beta; Reviewed
Probab=23.73 E-value=2.1e+02 Score=25.24 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEeCCCCCceE--EecCccccCCCCCCC---------CCcccccccCCCCeEEEEE
Q 036540 63 IYIREG-DRVLINVTNHAQYNMSI--HWHGLKQYRNGWADG---------PAYITQCPIKTGNSYTYDF 119 (562)
Q Consensus 63 i~v~~G-d~v~i~~~N~l~~~~si--H~HG~~~~~~~~~DG---------v~~~t~~~i~pG~~~~y~~ 119 (562)
|++++| +++.|.|.|..+++.-+ |+|=..+...--.|= .|.-|.....||++.+.+.
T Consensus 36 I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~L 104 (159)
T PRK13204 36 IEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTL 104 (159)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEE
No 155
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=23.59 E-value=79 Score=25.08 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=17.0
Q ss_pred CCCccceeeecCCCEEEEEEEe-cCceeE
Q 036540 495 DPPERNTVGVPTGGWTAIRFRA-DNPGVW 522 (562)
Q Consensus 495 ~p~~rDTv~vpp~g~~~irf~~-dnpG~w 522 (562)
...|+=||.||...+ .+.|.+ |..|.|
T Consensus 47 ~~~~~~tv~vP~~a~-~~dfvF~dg~~~w 74 (87)
T PF03423_consen 47 GGWWKATVDVPEDAY-VMDFVFNDGAGNW 74 (87)
T ss_dssp TTEEEEEEE--TTTS-EEEEEEE-SSS-E
T ss_pred CCEEEEEEEEcCCce-EEEEEEcCCCCcE
Confidence 456788999988766 588887 555676
No 156
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.41 E-value=2.4e+02 Score=24.29 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred EEEecC-CEEEEEEEeCCCCCceE--EecCccccCCCCCCC---------CCcccccccCCCCeEEEEE
Q 036540 63 IYIREG-DRVLINVTNHAQYNMSI--HWHGLKQYRNGWADG---------PAYITQCPIKTGNSYTYDF 119 (562)
Q Consensus 63 i~v~~G-d~v~i~~~N~l~~~~si--H~HG~~~~~~~~~DG---------v~~~t~~~i~pG~~~~y~~ 119 (562)
|.+++| +++.|.|.|..+++.-+ |+|=..+.+.-..|= .|.=|.....||++.+.+.
T Consensus 13 I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~L 81 (136)
T PRK13201 13 VEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQL 81 (136)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEE
No 157
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.39 E-value=4e+02 Score=25.54 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=50.1
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+-+.++.|+.+++.+... +..|.|- |-+-| ...| .-||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf~-------iP~lg------------------~k~d---aiPG~~~~~~~~~ 186 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAE----DVLHSWT-------VPALG------------------VKMD---AVPGRLNQATFII 186 (230)
T ss_pred CCeEEEecCCEEEEEEEcC----ccccccc-------ccccC------------------ceeE---ecCCceEEEEEEe
Confidence 3457889999999999874 4445543 33222 1123 3366777888999
Q ss_pred cCceeEEEEeehhHhHh-ccceEEEEEec
Q 036540 517 DNPGVWFMHCHLELHTM-WGLKMAFVVEN 544 (562)
Q Consensus 517 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 544 (562)
+.||.+.--|.-+-... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 99999999999866553 34555555443
No 158
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=23.36 E-value=88 Score=24.34 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHhhhccCcccCceEEEE
Q 036540 5 HRRHLVLLLTIFYFLGFLSFPADAAVKKYQ 34 (562)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (562)
.||.+++.+.++.+-++++.++.-.-|..+
T Consensus 2 aRRlwiLslLAVtLtVALAAPsQKsKRSVt 31 (100)
T PF05984_consen 2 ARRLWILSLLAVTLTVALAAPSQKSKRSVT 31 (100)
T ss_pred chhhHHHHHHHHHHHHHhhcccccccccee
Confidence 467777766665555555544444444433
No 159
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=22.58 E-value=5.2e+02 Score=24.80 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=29.8
Q ss_pred eEEEEecCcEEEEEEEecCCCCeE-EEEEcCcceEEEEeCCCccC
Q 036540 214 FAMEVESGKTYLLRIVNAALNDEL-FFAIAGHNMTVVEIDAVYTK 257 (562)
Q Consensus 214 ~~~~v~~G~~~rlRliN~~~~~~~-~~~l~gh~~~via~DG~~~~ 257 (562)
..+-+++| +|.||+|.-+-...- -+..-+.-+.++++|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeE
Confidence 34778997 699999987632221 23334566889999999863
No 160
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=21.95 E-value=7e+02 Score=28.25 Aligned_cols=65 Identities=8% Similarity=0.250 Sum_probs=42.1
Q ss_pred CCceEEEec---CCEEEEEEEeCCCCCceEEecCccccCCCCCCCCCcccccccCCCCeEEEEEEeCCCCCceEEec
Q 036540 59 PGPTIYIRE---GDRVLINVTNHAQYNMSIHWHGLKQYRNGWADGPAYITQCPIKTGNSYTYDFNVTGQRGTLWWHA 132 (562)
Q Consensus 59 pgP~i~v~~---Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DGv~~~t~~~i~pG~~~~y~~~~~~~~Gt~wyH~ 132 (562)
+.|.++++. ...|+|+|.|.......+|..-... .++.+ -...|++|++.+..|.+ ...+ -||--
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDL 659 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDL-SASG-GWYDF 659 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEec-cCCC-CceEE
Confidence 346676654 4569999999998888887652211 11111 12568999999999976 3333 67753
No 161
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=21.92 E-value=4.3e+02 Score=22.37 Aligned_cols=61 Identities=16% Similarity=0.348 Sum_probs=35.3
Q ss_pred ceEEEecCCEEEEEEEeCCCC-----CceEEec--CccccCC-CCCCCCCcc-cccccCCCCeEEEEEEe
Q 036540 61 PTIYIREGDRVLINVTNHAQY-----NMSIHWH--GLKQYRN-GWADGPAYI-TQCPIKTGNSYTYDFNV 121 (562)
Q Consensus 61 P~i~v~~Gd~v~i~~~N~l~~-----~~siH~H--G~~~~~~-~~~DGv~~~-t~~~i~pG~~~~y~~~~ 121 (562)
..=.++.|..+.+.+.=..+. .+.+|+. |+..+.. ...|+=... ..|||.+|+.++|.+.+
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 344567788777666533221 2334443 5544322 124553222 46999999999999976
No 162
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.83 E-value=2e+02 Score=25.81 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=22.5
Q ss_pred eEEEEcCcC-CCceEEEecCCEEEEEEEeCCCCCceEEecCcc
Q 036540 50 PIVTVNGMF-PGPTIYIREGDRVLINVTNHAQYNMSIHWHGLK 91 (562)
Q Consensus 50 ~~~~~Ng~~-pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~ 91 (562)
+.+.+.|.+ +|-..|-..|..|+.+++.. .....+...|+.
T Consensus 58 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~-~~~v~V~Y~Gil 99 (159)
T PRK13150 58 QRLRVGGMVMPGSVRRDPDSLKVNFSLYDA-EGSVTVSYEGIL 99 (159)
T ss_pred CEEEEeeEEeCCcEEECCCCcEEEEEEEcC-CcEEEEEEeccC
Confidence 445555544 45555544455677776654 334556666653
No 163
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=21.42 E-value=4.8e+02 Score=21.66 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=20.7
Q ss_pred CcceEEEEeCCCcc--CceEEeEEEeCCCceEEEEEEeCC
Q 036540 243 GHNMTVVEIDAVYT--KPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 243 gh~~~via~DG~~~--~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
.+++++...++... .+.....+.|.+|..|.+.+.-..
T Consensus 44 ~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 44 TYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred eEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCC
Confidence 34555544444322 234556667777777777665444
No 164
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.90 E-value=56 Score=23.60 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=18.6
Q ss_pred EEEEcCcCC-CceEEEecCCEEEE
Q 036540 51 IVTVNGMFP-GPTIYIREGDRVLI 73 (562)
Q Consensus 51 ~~~~Ng~~p-gP~i~v~~Gd~v~i 73 (562)
.+.+||+.- -|..+++.||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 367899764 68899999999976
No 165
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=20.77 E-value=23 Score=30.68 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=29.4
Q ss_pred ccCceEEEEEEEEEEEeecCCceeeEEEEcCcC-CCceEEEecCCEEEEEEEeCCCCCceEEecCcc
Q 036540 26 ADAAVKKYQFDVQVKNVSRLCNSKPIVTVNGMF-PGPTIYIREGDRVLINVTNHAQYNMSIHWHGLK 91 (562)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~-pgP~i~v~~Gd~v~i~~~N~l~~~~siH~HG~~ 91 (562)
+......|-+++++....... ..+.+.+.|.+ +|..-+-..+..++..+... .....++.+|..
T Consensus 28 ~~~~~~~yy~t~se~~~~~~~-~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~-~~~i~V~Y~G~~ 92 (131)
T PF03100_consen 28 SFSDSAVYYLTPSELAAEPQK-VGRKVRVGGLVVEGSVEYDPDGNTLTFTITDG-GKEIPVVYTGPL 92 (131)
T ss_dssp ----SSS-EE-TTTTTTTST--TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-S-S-EEEEEEES--
T ss_pred HhhccceEEcCHHHHhhcccc-CCceEEEeeEEccCCEEEcCCCCEEEEEEEEC-CcEEEEEECCCC
Confidence 444444555555544332221 22333445544 45444444788888888877 445678888854
No 166
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=20.64 E-value=3.3e+02 Score=22.31 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred EEEecC-cEEEEEEEecCCCCeEEEEEcCcceEEE--------EeCCCccCceEEeEEEeCCCceEEEEEEeCC
Q 036540 216 MEVESG-KTYLLRIVNAALNDELFFAIAGHNMTVV--------EIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 216 ~~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~vi--------a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
+.+.+| ++.++++.|.+ .+++.+.-|=|-+++- ++=|..+.=-.-..+..-|||.-+|.+..-.
T Consensus 13 I~lN~gr~~~~l~V~NtG-DRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~ 85 (101)
T cd00407 13 IELNAGREAVTLKVKNTG-DRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIG 85 (101)
T ss_pred eEeCCCCCEEEEEEEeCC-CcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEcc
Confidence 555566 67889999999 8888777666655542 1111111111235788889999988886543
No 167
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.63 E-value=4.6e+02 Score=25.05 Aligned_cols=75 Identities=11% Similarity=0.234 Sum_probs=50.9
Q ss_pred eeeEEeecCCEEEEEEEeCCCCCCCCCCeeecCCCeEEEEecCCCCCCCCCCCCCCCCCCCccceeeecCCCEEEEEEEe
Q 036540 437 TRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPKKDPAKFNLVDPPERNTVGVPTGGWTAIRFRA 516 (562)
Q Consensus 437 ~~~~~~~~g~~ve~~l~n~~~~~~~~HP~HlHG~~F~vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 516 (562)
.+.+.++.|+.+++.+... +..|.|.+-.. | ...|.+ ||-...+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~iP~l-------g------------------~k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSA----DVLHSWAVPSL-------G------------------VKMDAV---PGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEEC----Ccccccccccc-------C------------------ceeecC---CCceEEEEEEc
Confidence 3457899999999999884 45566654332 1 123333 67777889999
Q ss_pred cCceeEEEEeehhHhHhccce-EEEEEe
Q 036540 517 DNPGVWFMHCHLELHTMWGLK-MAFVVE 543 (562)
Q Consensus 517 dnpG~w~~HCHil~H~d~GM~-~~~~V~ 543 (562)
+.||.+..-|.-+--.....| ..++|.
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv 214 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMPIVIESV 214 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEe
Confidence 999999999988765544444 444433
No 168
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.33 E-value=3e+02 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=22.8
Q ss_pred EeCCCceEEEEEEeC-CC--CCeEEEEEeecCCC
Q 036540 265 LIAPGQTTNVLVKAD-QS--PSRYFMAARPFMDA 295 (562)
Q Consensus 265 ~l~pgeR~dv~v~~~-~~--~G~~~i~~~~~~~~ 295 (562)
.|.||+.+.|.++.- ++ .|.|.+.+..+..+
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G 131 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPG 131 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCC
Confidence 467999999999433 32 38999999876554
No 169
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.25 E-value=3.2e+02 Score=22.40 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=41.7
Q ss_pred EEEecC-cEEEEEEEecCCCCeEEEEEcCcceEEE--------EeCCCccCceEEeEEEeCCCceEEEEEEeCC
Q 036540 216 MEVESG-KTYLLRIVNAALNDELFFAIAGHNMTVV--------EIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 216 ~~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~vi--------a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
+.+.+| ++..+++.|.+ .+++.+.-|=|-+++- ++=|..+.=-.-..+..-||+.-+|.+..-.
T Consensus 13 I~ln~gr~~~~l~V~NtG-DRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~g 85 (102)
T PRK13203 13 IELNAGRETVTLTVANTG-DRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLA 85 (102)
T ss_pred EEeCCCCCEEEEEEEeCC-CCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEcc
Confidence 556666 67789999999 8888777676655552 1112111111235788889999998886543
No 170
>PRK13198 ureB urease subunit beta; Reviewed
Probab=20.25 E-value=2.8e+02 Score=24.48 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=42.0
Q ss_pred EEEecC-cEEEEEEEecCCCCeEEEEEcCcceEEE--------EeCCCccCceEEeEEEeCCCceEEEEEEeCC
Q 036540 216 MEVESG-KTYLLRIVNAALNDELFFAIAGHNMTVV--------EIDAVYTKPFTTQAILIAPGQTTNVLVKADQ 280 (562)
Q Consensus 216 ~~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~vi--------a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~ 280 (562)
+.+.+| ++..|++.|.| .+++.+.-|=|-+++- ++-|..+.=-.-..|..-||+.-+|.+..-.
T Consensus 41 I~lN~gr~~~~l~V~NtG-DRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~g 113 (158)
T PRK13198 41 ITFNENKPVTKVKVRNTG-DRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFG 113 (158)
T ss_pred eEeCCCCcEEEEEEEeCC-CCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEcc
Confidence 667777 77889999999 8888777666655542 1112211111235788888888888876543
No 171
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=20.24 E-value=1.2e+02 Score=21.07 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCCccce-eeecCCCEEEEEEEecCceeEEEEeehhHhHhc
Q 036540 495 DPPERNT-VGVPTGGWTAIRFRADNPGVWFMHCHLELHTMW 534 (562)
Q Consensus 495 ~p~~rDT-v~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~ 534 (562)
.|..+-+ |..+.+....++++...-..+=+||..+-|.+.
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3444332 334567888888888888999999999999764
Done!