BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036544
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 216/445 (48%), Gaps = 33/445 (7%)
Query: 5 RLDHKRVSVLLHHSESKLLFVDYQXXXXXXXXXXXXXX-------NTILPKPVLIHDDVS 57
RL K ++ +L+H+E K+L D + P+ L +++
Sbjct: 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEAL 164
Query: 58 ATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVS-SLIDWR- 115
+ V P E + YT+GTT PKGVV+ HR L + +++ SL+D
Sbjct: 165 GEEADPVRVP---------ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 215
Query: 116 IPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR-KVDVPIIYSVIKHHGVTHICGA- 173
+ + V L +PMFH N W + VG + ++D + + GVT G
Sbjct: 216 LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 275
Query: 174 ---LVVLNMLSSSP-STKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGF 229
L + + L S+ K L R ++ G++ P +++ R E +G V YGLTET+
Sbjct: 276 TVWLALADYLESTGHRLKTLRR---LVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV 332
Query: 230 VVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRS 289
VV KS +L++ E+ LKA+ G+ I L + V E G V DG++ GE+ +
Sbjct: 333 VVQNFVKSHLESLSEEEKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKG 390
Query: 290 GSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEV 349
I GY ++E + + + +F TGDI V +GY+EIKDR KD+I SGGE ISS ++
Sbjct: 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450
Query: 350 ESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIE-FCRARLPHYMA 408
E+ L +P + E A+VA W +RP A V + E KPT E + E +A +
Sbjct: 451 ENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE---KPTPEELNEHLLKAGFAKWQL 507
Query: 409 HKSVIIEDELPKTATGKIQKFVLRE 433
+ + +E+P+T+ GK K LRE
Sbjct: 508 PDAYVFAEEIPRTSAGKFLKRALRE 532
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 181/364 (49%), Gaps = 26/364 (7%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVS--SLIDWRIPNQPVFLWTLPMFHENGWSY 136
D + + YTSGTT PKGVVH H + S S ID R ++ L LPMFH +
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDR--LLLPLPMFHVAALTT 228
Query: 137 SWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGAL-VVLNMLSSSPSTKPLDRP--V 193
A G T I + + D ++S+I V I GA+ +LN + P LD P
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVC-IGGAVPAILNFMRQVPEFAELDAPDFR 287
Query: 194 KILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKAR 253
+T GA P A++ + V Y LTE+ G TL +E A KA
Sbjct: 288 YFITGGAPMPEALIKIYAAKNIEVVQGYALTESCG----------GGTLLLSEDALRKAG 337
Query: 254 QGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWF 313
R D+ V + G+ +H +GE+V +S ++ Y E + DN WF
Sbjct: 338 SAGRATMFTDV-AVRGDDGVIREH---GEGEVVIKSDILLKEYWNRPEATRDAF-DNGWF 392
Query: 314 YTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWG 373
TGDIG + +GYL IKDR KD+IISGGEN+ AE+ESV+ P ++EVA++ D+ WG
Sbjct: 393 RTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452
Query: 374 KRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLRE 433
+ A V + +E+ I+E+C RL Y K VI + +P+ TGKI K VLRE
Sbjct: 453 EIAAAIVVAD---QNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
Query: 434 IVNA 437
+A
Sbjct: 510 QYSA 513
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 181/368 (49%), Gaps = 22/368 (5%)
Query: 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPN-----QPVFLWTLPMFH 130
S D +AL Y+SGTT PKGV+ H+GL I +V+ +D PN + V L LPMFH
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGL-ITSVAQQVDGDNPNLYFHSEDVILCVLPMFH 234
Query: 131 ENGW-SYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPL 189
S VG + + K ++ + +I+ + V+ V+ ++ SP
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKH 294
Query: 190 D-RPVKILTSGASPPAAVLLRTESLGFV---VSHSYGLTETAGFVVSCAWKSQWNTLADT 245
D ++++ SG +P L T F + YG+TE + C ++
Sbjct: 295 DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAK------- 347
Query: 246 ERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSL 305
E +K + A+M +V PETG S+ + GEI R IM GYL D E +S
Sbjct: 348 EPFDIKPGACGTVVRNAEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSR 405
Query: 306 CMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALV 365
+ W +TGDIG + D L I DR K++I G ++ AE+E++L +P I++ A+V
Sbjct: 406 TIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVV 465
Query: 366 AQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGK 425
+D+ G+ P AFV +K E S+ TE+ I ++ ++ Y K V + +PK +GK
Sbjct: 466 GLKDEDAGEVPVAFV-VKSEKSQA-TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGK 523
Query: 426 IQKFVLRE 433
I + L+E
Sbjct: 524 ILRKNLKE 531
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 182/366 (49%), Gaps = 26/366 (7%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPN-----QPVFLWTLPMFHENG 133
D +AL Y+SGTT PKGV+ H+GL + +V+ +D PN V L LPMFH
Sbjct: 226 DVVALPYSSGTTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284
Query: 134 W-SYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLD-R 191
S VG + + K ++ ++ +I+ VT ++ ++ S T+ D
Sbjct: 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS 344
Query: 192 PVKILTSGASPPAAVLLRTESLGF---VVSHSYGLTETAGFVVSCAWKSQWNTLADTERA 248
++++ SGA+P L + F + YG+TE AG V++ + E
Sbjct: 345 SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFA------KEPF 397
Query: 249 RLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMR 308
+K+ + A+M +V P+TG S+ + GEI R IM GYL + ++ +
Sbjct: 398 PVKSGACGTVVRNAEMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAETID 455
Query: 309 DNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQR 368
+ W +TGDIG++ D L I DR K++I G ++ AE+E++L +P I +VA+VA +
Sbjct: 456 KDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMK 515
Query: 369 DKFWGKRPCAFV--SLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKI 426
++ G+ P AFV S ELS E+ + +F ++ Y V + +PK +GKI
Sbjct: 516 EEAAGEVPVAFVVKSKDSELS----EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKI 571
Query: 427 QKFVLR 432
+ LR
Sbjct: 572 LRKDLR 577
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 159/353 (45%), Gaps = 31/353 (8%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSW 138
D ++ +TSGTT K V R + + +L LP++H +G S
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLL 223
Query: 139 GMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTS 198
G T + K + I ++IK+ +THI LN L +P + KIL
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQ-KILLG 282
Query: 199 GASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRT 258
GA A ++ + +S+G+TET SQ+ T L AR
Sbjct: 283 GAKLSATMIETALQYNLPIYNSFGMTETC---------SQFLTATP---EMLHARPDTVG 330
Query: 259 IGLADMDVVHPETGMSVKH-DGQSQGEIVFRSGSIMLGYL--KDQEGSSLCMRDNDWFYT 315
+ A++DV +K+ + + GE++ + ++M GYL D G+ +N +F T
Sbjct: 331 MPSANVDV-------KIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTF----ENGYFNT 379
Query: 316 GDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKR 375
GDI + +GY+ I DR KD+IISGGENI ++E+V P I++ V D WG+
Sbjct: 380 GDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQV 439
Query: 376 PCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQK 428
P + + ++SK +I + L Y K D LP T+TGK+Q+
Sbjct: 440 PKLYFVSESDISKA----QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQR 488
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 154/359 (42%), Gaps = 22/359 (6%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSW 138
D A+ YTSGTT KG H L +++ + WR V + LP++H +G +
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 139 GMAAVG-GTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPS-TKPLDRPVKIL 196
+ G+ I L K D I + T + G L SP TK ++
Sbjct: 216 NVTLFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQSPRLTKETTGHXRLF 273
Query: 197 TSGASPPAAVLLR--TESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQ 254
SG++P A R + G V YG TET NT + R+
Sbjct: 274 ISGSAPLLADTHREWSAKTGHAVLERYGXTET-----------NXNTSNPYDGDRVPGAV 322
Query: 255 GVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFY 314
G G++ V PETG + G I + ++ GY + E + RD+ +F
Sbjct: 323 GPALPGVS-ARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFI 379
Query: 315 TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGK 374
TGD+G + GY+ I R KD++I+GG N+ E+ES + P + E A++ +G+
Sbjct: 380 TGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGE 439
Query: 375 RPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLRE 433
A V + E ++ +L + K VI D+LP+ GK+QK VLRE
Sbjct: 440 GVTAVVV--RDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRE 496
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 156/362 (43%), Gaps = 25/362 (6%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSW 138
D A+ YTSGTT G + H L +++ + WR V + LP++H +G +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 139 GMAAVG-GTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPS-TKPLDRPVKIL 196
+ G+ I L D I ++ T + G L SP T +++
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLF 273
Query: 197 TSGASPPAAVLLR--TESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQ 254
SG++P A R + G V YG+TET NT + R+
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDGDRVPGAV 322
Query: 255 GVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFY 314
G G++ V PETG + G I ++ GY + E + RD+ +F
Sbjct: 323 GPALPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 315 TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGK 374
TGD+G + GY+ I R D++I+GG N+ E+ES + P + E A++ +G+
Sbjct: 380 TGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGE 439
Query: 375 RPCAFVSLKWELSKKPTE---EAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVL 431
AFV L E + P+E E + F RL + VI D+LP+ G +Q VL
Sbjct: 440 GVTAFVVLXREFA--PSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVL 497
Query: 432 RE 433
RE
Sbjct: 498 RE 499
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 155/359 (43%), Gaps = 22/359 (6%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSW 138
D A+ YTSGTT G + H L +++ + WR V + LP++H +G +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 139 GMAAVG-GTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPS-TKPLDRPVKIL 196
+ G+ I L D I ++ T + G L SP T +++
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLF 273
Query: 197 TSGASPPAAVLLR--TESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQ 254
SG++P A R + G V YG+TET NT + R+
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDGDRVPGAV 322
Query: 255 GVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFY 314
G G++ V PETG + G I ++ GY + E + RD+ +F
Sbjct: 323 GPALPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 315 TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGK 374
TGD+G + GY+ I R D++I+GG N+ E+ES + P + E A++ +G+
Sbjct: 380 TGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGE 439
Query: 375 RPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLRE 433
AFV L E + P+E ++ +L + VI D+LP+ G +Q VLRE
Sbjct: 440 GVTAFVVLXREFA--PSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 173/385 (44%), Gaps = 29/385 (7%)
Query: 65 GHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLW 124
G +F+ V+ E D + YT GTT PKGV H L + + + + +
Sbjct: 167 GSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVG 226
Query: 125 TLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSS- 183
P FH + VG + + + I+ + T LN+L ++
Sbjct: 227 CXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTL 286
Query: 184 -PSTKPLD-RPVKILTSGASPPAAVLL---------RTESLGFVVSHSYGLTETAGFVVS 232
S K D +K+ +GA P A L+ + + + +G TE V
Sbjct: 287 ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXV-- 344
Query: 233 CAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSI 292
T R QGV + ++ V+ E G + G+S GEIV R +I
Sbjct: 345 --------TTNPPLRLDKSTTQGVPXSDI-ELKVISLEDGRELGV-GES-GEIVIRGPNI 393
Query: 293 MLGYLKDQEGSSLC----MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAE 348
GY K ++ + C + +F TGD+G + +G+L +DR K+VI G I+ E
Sbjct: 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE 453
Query: 349 VESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMA 408
+E++L + A+ +VA++ + D+ G+ P AF+ LK E K EE IIE+ R R+ Y
Sbjct: 454 LEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKR 513
Query: 409 HKSVIIEDELPKTATGKIQKFVLRE 433
+ V +ELP+TA+GK+ + +LRE
Sbjct: 514 VREVEFVEELPRTASGKLLRRLLRE 538
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 156/371 (42%), Gaps = 52/371 (14%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLID-WRIPNQPVFLWTLPMFHENGWSYS 137
D + +T+ P+G + +G +I SSL+D WR+ V L LP+FH G
Sbjct: 161 DGFVIIHTAAVGGRPRGAL-ISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLM 219
Query: 138 WGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLN---------MLSSSPSTKP 188
+ GG ++ K D I+ H VT + +L L+S +
Sbjct: 220 LTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTG 279
Query: 189 LDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERA 248
LD P I A+ P A T +G +ET+G ++ +R
Sbjct: 280 LDTPETIERFEATCPNATFWAT----------FGQSETSGLSTFAPYR---------DRP 320
Query: 249 RLKARQGV-RTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCM 307
+ R RT+ + D + G GEIV R ++ GY + +
Sbjct: 321 KSAGRPLFWRTVAVVDAEDRPLPPG--------EVGEIVLRGPTVFKGYWNNAAATQHAF 372
Query: 308 RDNDWFYTGDIGVVHSDGYLEIKDRS--KDVIISGGENISSAEVESVLYMNPAINEVALV 365
R N W +TGD+G +DGYL R+ K++I +GGEN+ AEVE L +PAI + ++
Sbjct: 373 R-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVI 431
Query: 366 AQRDKFWGKRPCAFVSLKWELSKKPTE----EAIIEFCRARLPHYMAHKSVIIEDELPKT 421
D W + ++K KP E +A+ EF + + Y K V+ + LPK
Sbjct: 432 GVPDPQWSE------AIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKD 485
Query: 422 ATGKIQKFVLR 432
A G I + ++
Sbjct: 486 AKGAIDRAAVK 496
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 150/359 (41%), Gaps = 22/359 (6%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSW 138
D A+ YTSGTT G + H L +++ + WR V + LP++H +G +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 139 GMAAVG-GTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPS-TKPLDRPVKIL 196
+ G+ I L D I ++ T + G L SP T +++
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLF 273
Query: 197 TSGASPPAAVLLR--TESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQ 254
SG++P A R + G V YG+TET NT + R+
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDGDRVPGAV 322
Query: 255 GVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFY 314
G G++ V PETG + G I ++ GY + E + RD+ +F
Sbjct: 323 GPALPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFI 379
Query: 315 TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGK 374
TGD+G + GY+ I R D++I+GG N+ E+ES + P + E A++ +G+
Sbjct: 380 TGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGE 439
Query: 375 RPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLRE 433
A V + E ++ +L + VI D+LP+ G +Q VLRE
Sbjct: 440 GVTAVV--VRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 173/398 (43%), Gaps = 35/398 (8%)
Query: 51 LIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGL--FIITV 108
L+ D + P + P + QP + YTSGTT PK + R ++ +
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQPAFIF------YTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 109 SSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMA-AVGGTNICLRKVDVPIIYSVIKHHGV 167
S+ + R V L +P++H G+ A A+ GT + + + +++ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQV 245
Query: 168 THICGA----LVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRT-ESLGFVVSHSYG 222
T + + + + S+ LD + +GA+ P AVL + L + YG
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYG 305
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
TE ++ + Q T + + VR G D V + E G
Sbjct: 306 TTEA----MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL-------- 353
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGE 342
IV S S +GYL E ++ ++D W+ T D+ V +G + I R D+IISGGE
Sbjct: 354 --IVAASDSAFVGYLNQPEATAEKLQDG-WYRTSDVAVWTPEGTVRILGRVDDMIISGGE 410
Query: 343 NISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRA- 401
NI +E+E VL P + EV ++ D+ WG+ A V + L + + +A+ FCR+
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR--LGETLSADALDTFCRSS 468
Query: 402 RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN 439
L + K I D+LPK A K+ + R++V V+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLR---RQLVQQVS 503
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 174/398 (43%), Gaps = 35/398 (8%)
Query: 51 LIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGL--FIITV 108
L+ D + P + P + QP + YTSGTT PK + R ++ +
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQPAFIF------YTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 109 SSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMA-AVGGTNICLRKVDVPIIYSVIKHHGV 167
S+ + R V L +P++H G+ A A+ GT + + + +++ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 168 THICGA----LVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRT-ESLGFVVSHSYG 222
T + + + + S+ LD + +GA+ P AVL + L ++YG
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYG 305
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
TE ++ + Q T + + VR G D V + E G
Sbjct: 306 TTEA----MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL-------- 353
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGE 342
IV S S +GYL + ++ ++D W+ T D+ V +G + I R D+IISGGE
Sbjct: 354 --IVAASDSAFVGYLNQPQATAEKLQDG-WYRTSDVAVWTPEGTVRILGRVDDMIISGGE 410
Query: 343 NISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRA- 401
NI +E+E VL P + EV ++ D+ WG+ A V + L + + +A+ FCR+
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR--LGETLSADALDTFCRSS 468
Query: 402 RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN 439
L + K I D+LPK A K+ + R++V V+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLR---RQLVQQVS 503
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 173/398 (43%), Gaps = 35/398 (8%)
Query: 51 LIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGL--FIITV 108
L+ D + P + P + QP + YTSGTT PK + R ++ +
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQPAFIF------YTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 109 SSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMA-AVGGTNICLRKVDVPIIYSVIKHHGV 167
S+ + R V L +P++H G+ A A+ GT + + + +++ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 168 THICGA----LVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRT-ESLGFVVSHSYG 222
T + + + + S+ LD + +GA+ P AVL + L + YG
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYG 305
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
TE ++ + Q T + + VR G D V + E G
Sbjct: 306 TTEA----MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL-------- 353
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGE 342
IV S S +GYL + ++ ++D W+ T D+ V +G + I R D+IISGGE
Sbjct: 354 --IVAASDSAFVGYLNQPQATAEKLQDG-WYRTSDVAVWTPEGTVRILGRVDDMIISGGE 410
Query: 343 NISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRA- 401
NI +E+E VL P + EV ++ D+ WG+ A V + L + + +A+ FCR+
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR--LGETLSADALDTFCRSS 468
Query: 402 RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN 439
L + K I D+LPK A K+ + R++V V+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLR---RQLVQQVS 503
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 173/398 (43%), Gaps = 35/398 (8%)
Query: 51 LIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGL--FIITV 108
L+ D + P + P + QP + YTSGTT PK + R ++ +
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQPAFIF------YTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 109 SSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMA-AVGGTNICLRKVDVPIIYSVIKHHGV 167
S+ + R V L +P++H G+ A A+ GT + + + +++ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 168 THICGA----LVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRT-ESLGFVVSHSYG 222
T + + + + S+ LD + +GA+ P AVL + L + YG
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYG 305
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
TE ++ + Q T + + VR G D V + E G
Sbjct: 306 TTEA----MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL-------- 353
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGE 342
IV S S +GYL + ++ ++D W+ T D+ V +G + I R D+IISGGE
Sbjct: 354 --IVAASDSAFVGYLNQPQATAEKLQDG-WYRTSDVAVWTPEGTVRILGRVDDMIISGGE 410
Query: 343 NISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRA- 401
NI +E+E VL P + EV ++ D+ WG+ A V + L + + +A+ FCR+
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR--LGETLSADALDTFCRSS 468
Query: 402 RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN 439
L + K I D+LPK A K+ + R++V V+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLR---RQLVQQVS 503
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 173/398 (43%), Gaps = 35/398 (8%)
Query: 51 LIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGL--FIITV 108
L+ D + P + P + QP + YTSGTT PK + R ++ +
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQPAFIF------YTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 109 SSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMA-AVGGTNICLRKVDVPIIYSVIKHHGV 167
S+ + R V L +P++H G+ A A+ GT + + + +++ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 168 THICGA----LVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRT-ESLGFVVSHSYG 222
T + + + + S+ LD + +GA+ P AVL + L + YG
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYG 305
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
TE ++ + Q T + + VR G D V + E G
Sbjct: 306 TTEA----MNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL-------- 353
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGE 342
IV S S +GYL + ++ ++D W+ T D+ V +G + I R D+IISGGE
Sbjct: 354 --IVAASDSAFVGYLNQPQATAEKLQDG-WYRTSDVAVWTPEGTVRILGRVPDMIISGGE 410
Query: 343 NISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRA- 401
NI +E+E VL P + EV ++ D+ WG+ A V + L + + +A+ FCR+
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR--LGETLSADALDTFCRSS 468
Query: 402 RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN 439
L + K I D+LPK A K+ + R++V V+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLR---RQLVQQVS 503
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 161/370 (43%), Gaps = 36/370 (9%)
Query: 77 EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLID-WRIPNQPVFLWTLPMFHENGWS 135
+ DP + YTSGTT PKG V R L T+ +L D W+ + V + LP+FH +G
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRAL-ATTLDALADAWQWTGEDVLVQGLPLFHVHGL- 211
Query: 136 YSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLN----MLSSSPS------ 185
V G LR+ ++H G GA LN ML P+
Sbjct: 212 -------VLGILGPLRR------GGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIA 258
Query: 186 -TKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLAD 244
T P D + +GA LL + S V + G V + +
Sbjct: 259 ETLPADPELAKALAGAR-----LLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNT 313
Query: 245 TERARLKARQGVRTIGLADMDV-VHPETGMSVKH-DGQSQGEIVFRSGSIMLGYLKDQEG 302
+ RA + R G + L +++ + E G + DG+S GEI R ++ YL +
Sbjct: 314 SVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDA 373
Query: 303 SSLCMRDNDWFYTGDIGVVHSDGYLEIKDR-SKDVIISGGENISSAEVESVLYMNPAINE 361
++ ++ +F TGD+ V DGY+ I R + D+I SGG I + E+E+ L +P + E
Sbjct: 374 TAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVRE 433
Query: 362 VALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKT 421
A+ + D G+R A++ + + + P + + ARL + + V D +P+
Sbjct: 434 AAVTGEPDPDLGERIVAWI-VPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRN 492
Query: 422 ATGKIQKFVL 431
GKI K L
Sbjct: 493 DMGKIMKRAL 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 169/398 (42%), Gaps = 35/398 (8%)
Query: 51 LIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGL--FIITV 108
L+ D + P + P + QP + YTSGTT PK + R ++
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP------AFIFYTSGTTGLPKAAIIPQRAAESRVLFX 185
Query: 109 SSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMA-AVGGTNICLRKVDVPIIYSVIKHHGV 167
S+ + R V L P++H G+ A A+ GT + + + +++ V
Sbjct: 186 STQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 168 THICGA----LVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRT-ESLGFVVSHSYG 222
T + + + + S+ LD + +GA+ P AVL + L + YG
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYG 305
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
TE + + Q T + + VR G D V + E G
Sbjct: 306 TTEAX----NSLYXRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL-------- 353
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGE 342
IV S S +GYL + ++ ++D W+ T D+ V +G + I R D IISGGE
Sbjct: 354 --IVAASDSAFVGYLNQPQATAEKLQDG-WYRTSDVAVWTPEGTVRILGRVDDXIISGGE 410
Query: 343 NISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRA- 401
NI +E+E VL P + EV ++ D+ WG+ A V + L + + +A+ FCR+
Sbjct: 411 NIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR--LGETLSADALDTFCRSS 468
Query: 402 RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN 439
L + K I D+LPK A K+ + R++V V+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLR---RQLVQQVS 503
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 117/258 (45%), Gaps = 23/258 (8%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVS--SLIDWRIPNQPVFLWTLPMFHENGWSY 136
D + + YTSGTT PKGVVH H + S S ID R ++ L LPMFH +
Sbjct: 157 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDR--LLLPLPMFHVAALTT 214
Query: 137 SWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGAL-VVLNMLSSSPSTKPLDRP--V 193
A G T I + + D ++S+I V I GA+ +LN + P LD P
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVC-IGGAVPAILNFMRQVPEFAELDAPDFR 273
Query: 194 KILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKAR 253
+T GA P A++ + V Y LTE+ G TL +E A KA
Sbjct: 274 YFITGGAPMPEALIKIYAAKNIEVVQGYALTESCG----------GGTLLLSEDALRKAG 323
Query: 254 QGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWF 313
R D+ V + G+ +H +GE+V +S ++ Y E + DN WF
Sbjct: 324 SAGRATMFTDV-AVRGDDGVIREH---GEGEVVIKSDILLKEYWNRPEATRDAF-DNGWF 378
Query: 314 YTGDIGVVHSDGYLEIKD 331
TGDIG + +GYL IKD
Sbjct: 379 RTGDIGEIDDEGYLYIKD 396
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 159/362 (43%), Gaps = 26/362 (7%)
Query: 83 LNYTSGTTSSPKGVVHCHRG-LFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMA 141
L + G+T K + H ++ + S + W + + V+L LPM H S S G+
Sbjct: 187 LQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPMAHNYPLS-SPGVL 244
Query: 142 AV--GGTNICLRKVDVPI-IYSVIKHHGVT--HICGALVVLNMLSSSPSTKPLDRPVKIL 196
V G + L P + +I+ VT + L ++ M ++S L +
Sbjct: 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQ 304
Query: 197 TSGASPPAAVLLRTES-LGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQG 255
GA A R ++ G + +G+ E G V + +T+ +
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLVNYTRLDDPEEIIVNTQGKPMSPYDE 362
Query: 256 VRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYT 315
R D DV ETG ++ R + GY K +E ++ ++ ++ T
Sbjct: 363 SRVWDDHDRDVKPGETG-----------HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411
Query: 316 GDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKR 375
GDI + DGY+ ++ R+KD I GGE +++ EVE+ L +PA+++ A+V+ D+F G+R
Sbjct: 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGER 471
Query: 376 PCAFVSLKWELSKKPTEEAIIEFCRAR-LPHYMAHKSVIIEDELPKTATGKIQKFVLREI 434
C F+ + E K +A F R R L Y V + P+T GK+ K LRE
Sbjct: 472 SCVFIIPRDEAPKAAELKA---FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREA 528
Query: 435 VN 436
++
Sbjct: 529 IS 530
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 164/391 (41%), Gaps = 30/391 (7%)
Query: 56 VSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWR 115
+ + P +FK V+ + + + +SG+T PKGV H + + S D
Sbjct: 170 IKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENI-VTRFSHARDPI 228
Query: 116 IPNQ----PVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHIC 171
NQ L +P H G + G G + L K D ++ + T++
Sbjct: 229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVI 288
Query: 172 GALVVLNMLSSSPSTKPLDRPVKI-LTSGASPPA-----AVLLRTESLGFVVSHSYGLTE 225
+ +L+ S D + + SG +P + AV R G V YGLTE
Sbjct: 289 LVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTE 346
Query: 226 TAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEI 285
T ++ T K + + L V+ +T S+ + +GE+
Sbjct: 347 TTSAIII------------TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPN--RRGEV 392
Query: 286 VFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENIS 345
+ +M GY+ + E + + + W +TGDIG + + I DR K +I G +
Sbjct: 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452
Query: 346 SAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPH 405
AE+ESVL +P+I + + D G+ P A V L E K TE+ ++++ +++ +
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL--ESGKNMTEKEVMDYVASQVSN 510
Query: 406 YMAHK-SVIIEDELPKTATGKIQKFVLREIV 435
+ V DE+PK TGKI +REI+
Sbjct: 511 AKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 158/365 (43%), Gaps = 37/365 (10%)
Query: 86 TSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPV----FLWTLPMFHENGWSYSWGMA 141
+SG+T PKGV H+ + + S D NQ + L +P H G + G
Sbjct: 232 SSGSTGLPKGVELTHKNI-CVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYL 290
Query: 142 AVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDR----PVKILT 197
G + + + + + ++ + I AL+V + S + +D+ + +
Sbjct: 291 TCGFRIVLMYRFEEELFLRSLQDY---KIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIA 347
Query: 198 SGASPPA-----AVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARL-K 251
SG +P A AV R + G + YGLTET ++ T R R K
Sbjct: 348 SGGAPLAKEVGEAVAKRFKLPG--IRQGYGLTETTSAIII------------TPRGRDDK 393
Query: 252 ARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDND 311
+ + +V +TG ++ + +GE+ + IM GY+ + E +S + +
Sbjct: 394 PGACGKVVPFFSAKIVDLDTGKTLGVN--QRGELCVKGPMIMKGYVNNPEATSALIDKDG 451
Query: 312 WFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKF 371
W ++GDI DGY I DR K +I G + AE+ES+L +P I + + D
Sbjct: 452 WLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPD 511
Query: 372 WGKRPCAFVSLKWELSKKPTEEAIIEFCRARL-PHYMAHKSVIIEDELPKTATGKIQKFV 430
G+ P A V L E K TE+ ++++ ++ V DE+PK TGKI
Sbjct: 512 AGELPAAVVVL--EEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKIDARK 569
Query: 431 LREIV 435
+REI+
Sbjct: 570 IREIL 574
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 163/392 (41%), Gaps = 30/392 (7%)
Query: 56 VSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWR 115
+ + P +FK V+ + + + +SG+T PKGV H + + S D
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENI-VTRFSHARDPI 228
Query: 116 IPNQ----PVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHIC 171
NQ L +P H G + G G + L K D ++ + T +
Sbjct: 229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVI 288
Query: 172 GALVVLNMLSSSPSTKPLDRPVKI-LTSGASPPA-----AVLLRTESLGFVVSHSYGLTE 225
+ +L+ S D + + SG +P + AV R G V YGLTE
Sbjct: 289 LVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTE 346
Query: 226 TAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEI 285
T ++ T K + + L V+ +T S+ + +GE+
Sbjct: 347 TTSAIII------------TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPN--RRGEV 392
Query: 286 VFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENIS 345
+ +M GY+ + E + + + W +TGDIG + + I DR K +I G +
Sbjct: 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452
Query: 346 SAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPH 405
AE+ESVL +P+I + + D G+ P A V L E K TE+ ++++ +++ +
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL--ESGKNMTEKEVMDYVASQVSN 510
Query: 406 YMAHK-SVIIEDELPKTATGKIQKFVLREIVN 436
+ V DE+PK TGKI +REI+
Sbjct: 511 AKRLRGGVRFVDEVPKGLTGKIDGRAIREILK 542
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 163/392 (41%), Gaps = 30/392 (7%)
Query: 56 VSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWR 115
+ + P +FK V+ + + + +SG+T PKGV H + + S D
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENI-VTRFSHARDPI 228
Query: 116 IPNQ----PVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHIC 171
NQ L +P H G + G G + L K D ++ + T +
Sbjct: 229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVI 288
Query: 172 GALVVLNMLSSSPSTKPLDRPVKI-LTSGASPPA-----AVLLRTESLGFVVSHSYGLTE 225
+ +L+ S D + + SG +P + AV R G V YGLTE
Sbjct: 289 LVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTE 346
Query: 226 TAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEI 285
T ++ T K + + L V+ +T S+ + +GE+
Sbjct: 347 TTSAIII------------TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPN--RRGEV 392
Query: 286 VFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENIS 345
+ +M GY+ + E + + + W +TGDIG + + I DR K +I G +
Sbjct: 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVP 452
Query: 346 SAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPH 405
AE+ESVL +P+I + + D G+ P A V L E K TE+ ++++ +++ +
Sbjct: 453 PAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL--ESGKNMTEKEVMDYVASQVSN 510
Query: 406 YMAHK-SVIIEDELPKTATGKIQKFVLREIVN 436
+ V DE+PK TGKI +REI+
Sbjct: 511 AKRLRGGVRFVDEVPKGLTGKIDGRAIREILK 542
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 167/401 (41%), Gaps = 44/401 (10%)
Query: 51 LIHDDVSATSSPTVGHPNFKWVQPESEWDPMA-LNYTSGTTSSPKGVVHCHRGLFIITVS 109
L++D + HP + S D +A + GTT +PK + H +
Sbjct: 156 LLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR 215
Query: 110 SLIDWRIPNQPVFLWTLPMFHENGWSY--SWGMAAVGGTNICLRKVDVPIIYSVIKHHGV 167
S+ + Q +L +P H S S G+ GGT + + + +I+ H V
Sbjct: 216 SVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQV 275
Query: 168 THICGALVV------LNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTES-LGFVVSHS 220
ALV L L S L + GA A + R + +G +
Sbjct: 276 N--VTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQV 333
Query: 221 YGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLA---DMDVVHPETGMSVKH 277
+G+ E G V + L D+ A + + T G D +V + +
Sbjct: 334 FGMAE--GLV-------NYTRLDDS------AEKIIHTQGYPMCPDDEVWVADAEGNPLP 378
Query: 278 DGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVI 337
G+ G ++ R GY K + ++ N ++ +GD+ + +GY+ ++ R KD I
Sbjct: 379 QGEV-GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI 437
Query: 338 ISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWEL-----SKKPTE 392
GGE I++ E+E++L +PA+ ALV+ D+ G++ CA++ +K L + E
Sbjct: 438 NRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLRE 497
Query: 393 EAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLRE 433
+ I EF +LP V D LP TA GK+ K LR+
Sbjct: 498 QGIAEF---KLP-----DRVECVDSLPLTAVGKVDKKQLRQ 530
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 4/155 (2%)
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGE 342
G ++ R + GY K +E ++ ++ ++ TGDI + DGY+ ++ R+KD I GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 343 NISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRAR 402
+++ EVE+ L +PA+++ A V+ D+F G+R C F+ + E P + F R R
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDE---APKAAELKAFLRER 495
Query: 403 -LPHYMAHKSVIIEDELPKTATGKIQKFVLREIVN 436
L Y V + P+T GK+ K LRE ++
Sbjct: 496 GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAIS 530
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 158/363 (43%), Gaps = 34/363 (9%)
Query: 86 TSGTTSSPKGVVHCHRGL---FIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAA 142
+SG+T PKGV HR L F + +I L +P H G + G
Sbjct: 203 SSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLI 262
Query: 143 VGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDR----PVKILTS 198
G + + + + + ++ + I AL+V + S + +D+ + + S
Sbjct: 263 SGFRVVLMYRFEEELFLRSLQDY---KIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIAS 319
Query: 199 GASPPA-----AVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKAR 253
G +P + AV R G + YGLTET ++ T + K
Sbjct: 320 GGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETTSAILI------------TPKGDDKPG 365
Query: 254 QGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWF 313
+ + + VV +TG ++ + +GE+ R IM GY+ + E ++ + + W
Sbjct: 366 AVGKVVPFFEAKVVDLDTGKTLGVN--QRGELSVRGPMIMSGYVNNPEATNALIDKDGWL 423
Query: 314 YTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWG 373
++GDI D + I DR K +I G ++ AE+ES+L +P I + + D G
Sbjct: 424 HSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAG 483
Query: 374 KRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHK-SVIIEDELPKTATGKIQKFVLR 432
+ P A V L E K TE+ I+++ +++ + V+ DE+PK TGK+ +R
Sbjct: 484 ELPAAVVVL--EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
Query: 433 EIV 435
EI+
Sbjct: 542 EIL 544
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 155/361 (42%), Gaps = 30/361 (8%)
Query: 86 TSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY--SWGMAAV 143
+ G+T +PK + H +S + + L LP H S + G+
Sbjct: 199 SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258
Query: 144 GGTNICLRKVDVPIIYSVIKHHGVTHICGALV---VLNMLSSSPSTKPLDRPVKIL-TSG 199
GG + + +S+I+ H V +LV V+ L + K + +K+L G
Sbjct: 259 GGCVVMAPNPEPLNCFSIIQRHQVN--MASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGG 316
Query: 200 ASPPAAVLLRT-ESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRT 258
AS P ++ + E L + +G+ E G V + T+ + + ++
Sbjct: 317 ASFPESLARQVPEVLNCKLQQVFGMAE--GLVNYTRLDDSDEQIFTTQGRPISSDDEIKI 374
Query: 259 IGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDI 318
+ +V E GM + R GY + E +S +++++Y+GD+
Sbjct: 375 VDEQYREVPEGEIGM-----------LATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDL 423
Query: 319 GVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCA 378
DG L + R KD I GGE I+S E+E ++ ++P + ALVA D+ +G++ CA
Sbjct: 424 VQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCA 483
Query: 379 FVSLKWELSKKPTEEAII---EFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIV 435
F+ +S+ P +A++ + Y + + + LP TA GK+ K LR I+
Sbjct: 484 FI-----VSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSIL 538
Query: 436 N 436
N
Sbjct: 539 N 539
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 48/370 (12%)
Query: 86 TSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVF----------LWTLPMFHENGWS 135
+SG+T PKGV HR ++ + + P+F L +P H G
Sbjct: 198 SSGSTGLPKGVALPHR-------TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF 250
Query: 136 YSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDR---- 191
+ G G + + + + + ++ + I AL+V + S + +D+
Sbjct: 251 TTLGYLICGFRVVLMYRFEEELFLRSLQDY---KIQSALLVPTLFSFFAKSTLIDKYDLS 307
Query: 192 PVKILTSGASPPA-----AVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTE 246
+ + SG +P + AV R G + YGLTET ++ T
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETTSAILI------------TP 353
Query: 247 RARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLC 306
K + + + VV +TG ++ + +GE+ R IM GY+ + E ++
Sbjct: 354 EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNAL 411
Query: 307 MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVA 366
+ + W ++GDI D + I DR K +I G ++ AE+ES+L +P I + +
Sbjct: 412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAG 471
Query: 367 QRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHK-SVIIEDELPKTATGK 425
D G+ P A V L E K TE+ I+++ +++ + V+ DE+PK TGK
Sbjct: 472 LPDDDAGELPAAVVVL--EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGK 529
Query: 426 IQKFVLREIV 435
+ +REI+
Sbjct: 530 LDARKIREIL 539
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 48/370 (12%)
Query: 86 TSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVF----------LWTLPMFHENGWS 135
+SG+T PKGV HR ++ + + P+F L +P H G
Sbjct: 203 SSGSTGLPKGVALPHR-------TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF 255
Query: 136 YSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDR---- 191
+ G G + + + + + ++ + I AL+V + S + +D+
Sbjct: 256 TTLGYLICGFRVVLMYRFEEELFLRSLQDY---KIQSALLVPTLFSFFAKSTLIDKYDLS 312
Query: 192 PVKILTSGASPPA-----AVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTE 246
+ + SG +P + AV R G + YGLTET ++ T
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETTSAILI------------TP 358
Query: 247 RARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLC 306
K + + + VV +TG ++ + +GE+ R IM GY+ + E ++
Sbjct: 359 EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNAL 416
Query: 307 MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVA 366
+ + W ++GDI D + I DR K +I G ++ AE+ES+L +P I + +
Sbjct: 417 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAG 476
Query: 367 QRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHK-SVIIEDELPKTATGK 425
D G+ P A V L E K TE+ I+++ +++ + V+ DE+PK TGK
Sbjct: 477 LPDDDAGELPAAVVVL--EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGK 534
Query: 426 IQKFVLREIV 435
+ +REI+
Sbjct: 535 LDARKIREIL 544
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 48/370 (12%)
Query: 86 TSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVF----------LWTLPMFHENGWS 135
+SG+T PKGV HR ++ + + P+F L +P H G
Sbjct: 198 SSGSTGLPKGVALPHR-------TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF 250
Query: 136 YSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDR---- 191
+ G G + + + + + ++ + I AL+V + S + +D+
Sbjct: 251 TTLGYLICGFRVVLMYRFEEELFLRSLQDY---KIQSALLVPTLFSFFAKSTLIDKYDLS 307
Query: 192 PVKILTSGASPPA-----AVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTE 246
+ + SG +P + AV R G + YGLTET ++ T
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETTSAILI------------TP 353
Query: 247 RARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLC 306
K + + + VV +TG ++ + +GE+ R IM GY+ + E ++
Sbjct: 354 EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNAL 411
Query: 307 MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVA 366
+ + W ++GDI D + I DR K +I G ++ AE+ES+L +P I + +
Sbjct: 412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAG 471
Query: 367 QRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHK-SVIIEDELPKTATGK 425
D G+ P A V L E K TE+ I+++ +++ + V+ DE+PK TGK
Sbjct: 472 LPDDDAGELPAAVVVL--EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGK 529
Query: 426 IQKFVLREIV 435
+ +REI+
Sbjct: 530 LDARKIREIL 539
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 163/393 (41%), Gaps = 46/393 (11%)
Query: 74 PESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSL-IDWRIPNQPVFLWTLPMFHEN 132
P DP+ L YTSG+T +PKGV H G + + ++ + + VF +
Sbjct: 258 PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWIT 317
Query: 133 GWSYS-WGMAAVGGTNICLRKVDVPIIYS----VIKHHGVTHICGALVVLNMLSSSPSTK 187
G +Y +G G + YS +I H VT A L +L + +
Sbjct: 318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY 377
Query: 188 PLD---RPVKILTSGASPPAAVLLR--TESLGF-----------VVSHSYGLTETAGFVV 231
+ + ++ L S P AA + +E +G S S+ +T AG V
Sbjct: 378 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVT 437
Query: 232 SCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGS 291
S + L G +++ H E ++VK S ++++
Sbjct: 438 PMKPGSASFPFFGIDAVVLDPNTG------EELNTSHAEGVLAVKAAWPSFARTIWKNHD 491
Query: 292 IMLG-YLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
L YL G +++TGD DGY+ I R DV+ G +S+AE+E
Sbjct: 492 RYLDTYLNPYPG---------YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 542
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLK----WELSK----KPTEEAIIEFCRAR 402
+ + +P + E A+V D G+ AFV LK W + + ++ ++ R
Sbjct: 543 AAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKD 602
Query: 403 LPHYMAHKSVIIEDELPKTATGKIQKFVLREIV 435
+ + A K +I+ D+LPKT +GKI + +LR+I+
Sbjct: 603 IGPFAAPKLIILVDDLPKTRSGKIMRRILRKIL 635
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 41/371 (11%)
Query: 82 ALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYS---- 137
A+ +TSGT+ PK H + L + W +WT+ + GW +
Sbjct: 210 AIYFTSGTSGLPKMAEHSYSSLGL-KAKMDAGWTGLQASDIMWTI---SDTGWILNILCS 265
Query: 138 ----WGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNML-SSSPSTKPLDRP 192
W + A ++ L K D +I + + + + GA +V ML S+
Sbjct: 266 LMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHL 324
Query: 193 VKILTSGAS--PPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARL 250
+T G S P R ++ G + SYG TET ++C ++ T +
Sbjct: 325 QNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETG---LTC-------MVSKT----M 369
Query: 251 KARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSG-----SIMLGYLKDQEGSSL 305
K + G + DV + +V G ++G+I R I GY+ + + ++
Sbjct: 370 KIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIRPIGIFSGYVDNPDKTAA 428
Query: 306 CMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALV 365
+R + W GD G+ DGY + R+ D+I S G I +EVE+ L +PA+ E A++
Sbjct: 429 NIRGDFWLL-GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVI 487
Query: 366 AQRDKFWGKRPCAFVSLKWE-LSKKPTE--EAIIEFCRARLPHYMAHKSVIIEDELPKTA 422
+ D G+ AFV L + LS P + + + + ++ Y + + LPKT
Sbjct: 488 SSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTV 547
Query: 423 TGKIQKFVLRE 433
TGKIQ+ LR+
Sbjct: 548 TGKIQRAKLRD 558
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 41/371 (11%)
Query: 82 ALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYS---- 137
A+ +TSGT+ PK H + L + W +WT+ + GW +
Sbjct: 210 AIYFTSGTSGLPKMAEHSYSSLGL-KAKMDAGWTGLQASDIMWTI---SDTGWILNILCS 265
Query: 138 ----WGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNML-SSSPSTKPLDRP 192
W + A ++ L K D +I + + + + GA +V ML S+
Sbjct: 266 LMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHL 324
Query: 193 VKILTSGAS--PPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARL 250
+T G S P R ++ G + SYG TET ++C ++ T +
Sbjct: 325 QNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETG---LTC-------MVSKT----M 369
Query: 251 KARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSG-----SIMLGYLKDQEGSSL 305
K + G + DV + +V G ++G+I R I GY+ + + ++
Sbjct: 370 KIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIRPIGIFSGYVDNPDKTAA 428
Query: 306 CMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALV 365
+R + W GD G+ DGY + R+ D+I S G I +EVE+ L +PA+ E A++
Sbjct: 429 NIRGDFWLL-GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVI 487
Query: 366 AQRDKFWGKRPCAFVSLKWE-LSKKPTE--EAIIEFCRARLPHYMAHKSVIIEDELPKTA 422
+ D G+ AFV L + LS P + + + + ++ Y + + LPKT
Sbjct: 488 SSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTV 547
Query: 423 TGKIQKFVLRE 433
TGKIQ+ LR+
Sbjct: 548 TGKIQRAKLRD 558
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 156/362 (43%), Gaps = 36/362 (9%)
Query: 85 YTSGTTSSPKGVVHCHRGLF-IITVSSLIDWRIPNQPVFLWTLPMFHE----NGWSYSWG 139
Y+SG+T PKG VH H L+ + + I V +F NG ++
Sbjct: 190 YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPL- 248
Query: 140 MAAVGGTNICL--RKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILT 197
+VG T I + R I +++H + NML S D ++I T
Sbjct: 249 --SVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICT 306
Query: 198 S-GASPPAAVLLR-TESLGFVVSHSYGLTETAG-FVVSCAWKSQWNTLADTERARLKARQ 254
S G + P + R T G + G TE F+ + A ++ T
Sbjct: 307 SAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTG----------- 355
Query: 255 GVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFY 314
R + ++++ E G +V DG+ G++ + S + Y ++E S +W
Sbjct: 356 --RPVPGYEIEL-RDEAGHAVP-DGEV-GDLYIKGPSAAVMYWNNREKSRATFL-GEWIR 409
Query: 315 TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGK 374
+GD +G RS D++ G+ +S EVE VL + A+ E A+V D
Sbjct: 410 SGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLV 468
Query: 375 RPCAFVSLKWELSKKPTE---EAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVL 431
+ AFV LK E + P+E E + F + RL + + ++ D+LPKTATGKIQ+F L
Sbjct: 469 KTRAFVVLKREFA--PSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKL 526
Query: 432 RE 433
RE
Sbjct: 527 RE 528
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 42/388 (10%)
Query: 73 QPES--EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP--VFLWTLPM 128
QPE+ DP+ + YTSG+T PKGV+H G +++ ++ + P ++ T +
Sbjct: 249 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADV 307
Query: 129 FHENGWSYS-WGMAAVGGTNICLRKV-DVPI---IYSVIKHHGVTHICGALVVLN--MLS 181
G SY +G A G T + V + P + V+ H V + A + M
Sbjct: 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
Query: 182 SSPSTKPLDRP-VKILTSGASP--PAAVLLRTESLG---FVVSHSYGLTETAGFVVSCAW 235
+ + DR ++IL S P P A + +G V ++ TET GF+++
Sbjct: 368 GDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL- 426
Query: 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SG 290
LKA R +V E +G ++G +V
Sbjct: 427 ---------PGAIELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQA 474
Query: 291 SIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
+ G + E + N +F +GD DGY I R DV+ G + +AE+E
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIE---FCRARLPHYM 407
S L +P I E A+V G+ A+V+L ++P+ E E + R +
Sbjct: 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 408 AHKSVIIEDELPKTATGKIQKFVLREIV 435
+ D LPKT +GKI + +LR+I
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 159/386 (41%), Gaps = 38/386 (9%)
Query: 73 QPES--EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP--VFLWTLPM 128
QPE+ DP+ + YTSG+T PKGV+H G +++ ++ + P ++ T +
Sbjct: 249 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADV 307
Query: 129 FHENGWSYS-WGMAAVGGTNICLRKV-DVPI---IYSVIKHHGVTHICGALVVLN--MLS 181
G SY +G A G T + V + P + V+ H V + A + M
Sbjct: 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
Query: 182 SSPSTKPLDRP-VKILTSGASP--PAAVLLRTESLG---FVVSHSYGLTETAGFVVSCAW 235
+ + DR ++IL S P P A + +G V ++ TET GF+++
Sbjct: 368 GDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL- 426
Query: 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SG 290
LKA R +V E +G ++G +V
Sbjct: 427 ---------PGAIELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQA 474
Query: 291 SIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
+ G + E + N +F +GD DGY I R DV+ G + +AE+E
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHK 410
S L +P I E A+V G+ A+V+L P A + A+ +A
Sbjct: 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATP 593
Query: 411 SVI-IEDELPKTATGKIQKFVLREIV 435
V+ D LPKT +GKI + +LR+I
Sbjct: 594 DVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 42/388 (10%)
Query: 73 QPES--EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP--VFLWTLPM 128
QPE+ DP+ + YTSG+T PKGV+H G +++ ++ + P ++ T +
Sbjct: 249 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADV 307
Query: 129 FHENGWSYS-WGMAAVGGTNICLRKV-DVPI---IYSVIKHHGVTHICGALVVLN--MLS 181
G SY +G A G T + V + P + V+ H V + A + M
Sbjct: 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
Query: 182 SSPSTKPLDRP-VKILTSGASP--PAAVLLRTESLG---FVVSHSYGLTETAGFVVSCAW 235
+ + DR ++IL S P P A + +G V ++ TET GF+++
Sbjct: 368 GDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL- 426
Query: 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SG 290
LKA R +V E +G ++G +V
Sbjct: 427 ---------PGAIELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQA 474
Query: 291 SIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
+ G + E + N +F +GD DGY I R DV+ G + +AE+E
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIE---FCRARLPHYM 407
S L +P I E A+V G+ A+V+L ++P+ E E + R +
Sbjct: 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 408 AHKSVIIEDELPKTATGKIQKFVLREIV 435
+ D LPKT +GKI + +LR+I
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 42/388 (10%)
Query: 73 QPES--EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP--VFLWTLPM 128
QPE+ DP+ + YTSG+T PKGV+H G +++ ++ + P ++ T +
Sbjct: 249 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADV 307
Query: 129 FHENGWSYS-WGMAAVGGTNICLRKV-DVPI---IYSVIKHHGVTHICGALVVLN--MLS 181
G SY +G A G T + V + P + V+ H V + A + M
Sbjct: 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
Query: 182 SSPSTKPLDRP-VKILTSGASP--PAAVLLRTESLG---FVVSHSYGLTETAGFVVSCAW 235
+ + DR ++IL S P P A + +G V ++ TET GF+++
Sbjct: 368 GDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL- 426
Query: 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SG 290
LKA R +V E +G ++G +V
Sbjct: 427 ---------PGAIELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQA 474
Query: 291 SIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
+ G + E + N +F +GD DGY I R DV+ G + +AE+E
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIE---FCRARLPHYM 407
S L +P I E A+V G+ A+V+L ++P+ E E + R +
Sbjct: 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 408 AHKSVIIEDELPKTATGKIQKFVLREIV 435
+ D LPKT +GKI + +LR+I
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 160/388 (41%), Gaps = 42/388 (10%)
Query: 73 QPES--EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP--VFLWTLPM 128
QPE+ DP+ + YTSG+T PKGV+H G +++ ++ + P ++ T +
Sbjct: 249 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADV 307
Query: 129 FHENGWSYS-WGMAAVGGTNICLRKV-DVPI---IYSVIKHHGVTHICGALVVLN--MLS 181
G SY +G A G T + V + P + V+ H V + A + M
Sbjct: 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
Query: 182 SSPSTKPLDRP-VKILTSGASP--PAAVLLRTESLG---FVVSHSYGLTETAGFVVSCAW 235
+ + DR ++IL S P P A + +G V ++ TET GF+++
Sbjct: 368 GDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL- 426
Query: 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SG 290
LKA R +V E +G ++G +V
Sbjct: 427 ---------PGAIELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQA 474
Query: 291 SIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
+ G + E + N +F +GD DGY I R DV+ G + +AE+E
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIE---FCRARLPHYM 407
S L +P I E A+V G+ A+V+L ++P+ E E + R +
Sbjct: 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 408 AHKSVIIEDELPKTATGKIQKFVLREIV 435
+ D LPKT +GKI + +LR+I
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 158/386 (40%), Gaps = 38/386 (9%)
Query: 73 QPES--EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP--VFLWTLPM 128
QPE+ DP+ + YTSG+T PKGV+H G +++ ++ + P ++ T +
Sbjct: 249 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADV 307
Query: 129 FHENGWSYS-WGMAAVGGTNICLRKV-DVPI---IYSVIKHHGVTHICGALVVLN--MLS 181
G SY +G A G T + V + P + V+ H V + A + M
Sbjct: 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
Query: 182 SSPSTKPLDRP-VKILTSGASP--PAAVLLRTESLG---FVVSHSYGLTETAGFVVSCAW 235
+ + DR ++IL S P P A + +G V ++ TET GF+++
Sbjct: 368 GDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL- 426
Query: 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SG 290
LKA R +V E +G ++G +V
Sbjct: 427 ---------PGAIELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQA 474
Query: 291 SIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
+ G + E + N +F +GD DGY I R DV+ G + +AE+E
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHK 410
S L +P I E A+V G+ A+V+L P A + + +A
Sbjct: 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATP 593
Query: 411 SVI-IEDELPKTATGKIQKFVLREIV 435
V+ D LPKT +GKI + +LR+I
Sbjct: 594 DVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 159/388 (40%), Gaps = 42/388 (10%)
Query: 73 QPES--EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP--VFLWTLPM 128
QPE+ DP+ + YTSG+T PKGV+H G +++ ++ + P ++ T +
Sbjct: 249 QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG-YLVYAATTFKYVFDYHPGDIYWCTADV 307
Query: 129 FHENGWSYS-WGMAAVGGTNICLRKV-DVPI---IYSVIKHHGVTHICGALVVLN--MLS 181
G SY +G A G T + V + P + V+ H V + A + M
Sbjct: 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAE 367
Query: 182 SSPSTKPLDRP-VKILTSGASP--PAAVLLRTESLG---FVVSHSYGLTETAGFVVSCAW 235
+ + DR ++IL S P P A + +G V ++ TET GF+++
Sbjct: 368 GDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL- 426
Query: 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SG 290
LKA R +V E +G ++G +V
Sbjct: 427 ---------PGAIELKAGSATRPFFGVQPALVDNE---GHPQEGATEGNLVITDSWPGQA 474
Query: 291 SIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVE 350
+ G + E + N +F +GD DGY I R DV+ G + +AE+E
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 351 SVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIE---FCRARLPHYM 407
S L +P I E A+V G+ A+V+L ++P+ E E + R +
Sbjct: 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN--HGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 408 AHKSVIIEDELPKTATGKIQKFVLREIV 435
+ D LPKT +G I + +LR+I
Sbjct: 592 TPDVLHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 149/375 (39%), Gaps = 35/375 (9%)
Query: 72 VQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHE 131
V PE D + +TSG+T PKGV+ HR L + P++ VFL P+
Sbjct: 211 VGPE---DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDE-VFLQCSPV--- 263
Query: 132 NGWSYSWGMAAVG----GTNICLRKVDVPI---IYSVIKHHGVTHICGALVVLNMLSSSP 184
W ++G+ G G L+ P I ++ HGVT + + + N L
Sbjct: 264 -SWD-AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDE- 320
Query: 185 STKPLDRPVKILTSGASP---PAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNT 241
V+ +G P P R + + + YG E+ GF A +
Sbjct: 321 -VPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA--GD 377
Query: 242 LADTERARLKARQGVRTIGLADMDVVHPETG----MSVKHDGQSQGEIVFRSGSIMLGYL 297
L+ T G R L D D+ G + V G + G V R ++
Sbjct: 378 LSGTALPIGVPLAGKRAYVLDD-DLKPAANGALGELYVAGAGLAHG-YVSRPALTAERFV 435
Query: 298 KDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNP 357
D R + TGD+ +DG LE R+ D + G + EVE+ L +P
Sbjct: 436 ADPFAGPGGER---MYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHP 492
Query: 358 AINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRAR-LPHYMAHKSVIIED 416
A+ + A++AQ + K+ A+V E + P + A + A LP YM + D
Sbjct: 493 AVRQAAVLAQDSRLGDKQLVAYVV--AERADAPPDAAELRRHVAEALPAYMVPVECVPVD 550
Query: 417 ELPKTATGKIQKFVL 431
ELP+T GK+ + L
Sbjct: 551 ELPRTPNGKLDRRAL 565
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 110/277 (39%), Gaps = 24/277 (8%)
Query: 165 HGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASP--PAAVLLRTESLGFVVSHSYG 222
+GVT C + L + +K P P E G + +G
Sbjct: 315 YGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFG 374
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
TET + + W + + K G + I L D D E G +
Sbjct: 375 QTETVVTIATFPW------MEPKPGSIGKPTPGYK-IELMDRDGRLCEVG--------EE 419
Query: 283 GEIVFRSGS-----IMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVI 337
GEIV + + + Y KD E + D +++TGD+ + DGYL R+ D+I
Sbjct: 420 GEIVINTMEGKPVGLFVHYGKDPERTEETWHDG-YYHTGDMAWMDEDGYLWFVGRADDII 478
Query: 338 ISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPT-EEAII 396
+ G + EVES L +PA+ E A+ D G+ A + L + + + + +
Sbjct: 479 KTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQ 538
Query: 397 EFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLRE 433
+ + Y + + ELPKT +GKI++ +R+
Sbjct: 539 DHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRD 575
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 144/372 (38%), Gaps = 36/372 (9%)
Query: 74 PESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP-VFLWTLPMFHEN 132
P D + YTSGTT +PKG + H+G+ + V + + + + F +
Sbjct: 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDAS 237
Query: 133 GWSYSWGMAAVGGTNICLRKV--DVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLD 190
W + I L+ D I +T I + L + L
Sbjct: 238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---RILS 294
Query: 191 RPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARL 250
I A+ P+ V E + ++ ++YG TET + + W + T+ +
Sbjct: 295 IQTLITAGSATSPSLVNKWKEKVTYI--NAYGPTETT--ICATTWVATKETIGHS----- 345
Query: 251 KARQGVRTIG--LADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMR 308
IG + + + + + +K G++ GE+ + GY K E +S
Sbjct: 346 ------VPIGAPIQNTQIYIVDENLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFV 398
Query: 309 DNDW------FYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEV 362
DN + + TGD SDG +E R + + G + EVES+L + I+E
Sbjct: 399 DNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISET 458
Query: 363 ALVAQRDKFWGKRPCA-FVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKT 421
A+ +D CA FVS K E + +F LP YM I D++P T
Sbjct: 459 AVSVHKDHQEQPYLCAYFVS-----EKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLT 513
Query: 422 ATGKIQKFVLRE 433
+ GKI + L E
Sbjct: 514 SNGKIDRKQLPE 525
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 149/375 (39%), Gaps = 50/375 (13%)
Query: 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWR-IPNQPVFLWTLPMFHENGWSYS 137
DP + YTSGTT PKG + H I + +D+ +Q FL ++ + + +++
Sbjct: 608 DPAYIMYTSGTTGKPKGNITTHAN--IQGLVKHVDYMAFSDQDTFL-SVSNYAFDAFTFD 664
Query: 138 WGMAAVGGTNICLRK----VDVPIIYSVIKHHGVTHICGALVVLNMLSSSPS--TKPLDR 191
+ + + + + +D + +I V + + N+L+ + K L R
Sbjct: 665 FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGL-R 723
Query: 192 PVKILTSGAS-PPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARL 250
+ AS P LR G ++ + YG TE F + + L D+
Sbjct: 724 CILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVV----HDLPDS----- 773
Query: 251 KARQGVRTIGLADMDVVHPETGMSVK-HDGQSQ-------GEIVFRSGSIMLGYLKDQEG 302
++ + + P + SV + QSQ GE+ + GY+ +
Sbjct: 774 ----------ISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADL 823
Query: 303 SSLCMRDNDW------FYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMN 356
+ +N + + TGD+ DG +E R D + G I E+E L
Sbjct: 824 TKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEY 883
Query: 357 PAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIED 416
P + + +VA R + A++ + +LS E + + +LP YM ++ D
Sbjct: 884 PGVKDAVVVADRHESGDASINAYLVNRTQLSA----EDVKAHLKKQLPAYMVPQTFTFLD 939
Query: 417 ELPKTATGKIQKFVL 431
ELP T GK+ K +L
Sbjct: 940 ELPLTTNGKVNKRLL 954
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 144/381 (37%), Gaps = 47/381 (12%)
Query: 85 YTSGTTSSPKGVVHCHRGLFIITVSSLID--WRIPNQPVFLWTLPMFHENGWSYSWGMAA 142
+TSGTT PKGV H L T + D + +P QP L P + Y A
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLA 211
Query: 143 VGGTNICLRK---VDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSG 199
+GGT L K D +++ I A + + + +S+PS + +L+
Sbjct: 212 LGGTLFALPKELVADFKQLFTTI----------AQLPVGIWTSTPSFADM----AMLSDD 257
Query: 200 ---ASPPAAVLLRTESLGFVVSHSYGLTE---TAGFVVSCAWKSQWNTLADTERARLKAR 253
A PA + VS + L E +A + + L+ E R
Sbjct: 258 FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVD 317
Query: 254 QGVRT-IGLADMDVVHPETGMSVKHDGQS-----QGEIVFRSGSIMLGYLKDQEGSS--- 304
R IG D + DG+ QGEI+ ++ GYL + E ++
Sbjct: 318 NYTRLPIGYPKPD----SPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAF 373
Query: 305 LCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVAL 364
+ ++TGDIG + D L R I G I +V L +P +
Sbjct: 374 FTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVA 433
Query: 365 VAQRDKFWG-KRPCAFVSLKWELSKKPTEE-----AIIEFCRARLPHYMAHKSVIIEDEL 418
V + +K + A++ +K + ++ E AI + + YM + D L
Sbjct: 434 VPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSL 493
Query: 419 PKTATGKIQKFVLREIVNAVN 439
P T GKI ++ ++N VN
Sbjct: 494 PLTPNGKID---IKTLINEVN 511
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 269 PETGMSVKHDG------QSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVH 322
PE G+ ++++ + G I S+ GY DQ S + W TGD+G +
Sbjct: 391 PEHGIEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQV-SQDEIAATGWLDTGDLGYLL 449
Query: 323 SDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAI---NEVALVAQRDKFWGKRPCAF 379
DGYL + R KD+II G NI ++E + P I + +A V ++K
Sbjct: 450 -DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI-------I 501
Query: 380 VSLKWELSKKPTEEAIIEFCRARLPHYM---AHKSVIIEDELPKTATGK 425
+ ++ +S + +I AR+ A ++ +P+T++GK
Sbjct: 502 LQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGK 550
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 148/379 (39%), Gaps = 42/379 (11%)
Query: 70 KWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPV-----FLW 124
+WV+ E + + YTSG+T +PKGV + + S DW + PV FL
Sbjct: 138 QWVK---EHETFYIIYTSGSTGNPKGV-----QISAANLQSFTDWICADFPVSGGKIFLN 189
Query: 125 TLPMFHENGWSYSWGMAAVGGTNICLRK--VDVP-IIYSVIKHHGVT--HICGALVVLNM 179
P + + GGT C+ K V+ P +++ +K G+ + V + +
Sbjct: 190 QAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249
Query: 180 LSSSPSTKPLDRPVKILTSGASPPAAVL--LRTESLGFVVSHSYGLTETAGFVVSCAWKS 237
+ S L + G P +V L + ++YG TE V S +
Sbjct: 250 MDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN 309
Query: 238 QWNTLADTERARLKARQGVRTIGLA--DMDV-VHPETGMSVKHDGQSQGEIVFRSGSIML 294
+ +R +G A DM++ + E G + +GEIV S+
Sbjct: 310 D-----------VISRSESLPVGFAKPDMNIFIMDEEGQPLPEG--EKGEIVIAGPSVSR 356
Query: 295 GYLKDQE--GSSLCMRDNDWFY-TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVES 351
GYL + E + + W Y TGD G + DG + + R I G + E+E
Sbjct: 357 GYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEF 415
Query: 352 VLYMNPAINEVALVA-QRDKFWGKRPCAFVSLKWELSKK-PTEEAIIEFCRARLPHYMAH 409
+ + + ++ Q + A V + E K+ AI + A LP YM
Sbjct: 416 HVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIP 475
Query: 410 KSVIIEDELPKTATGKIQK 428
+ I +D + TA GKI +
Sbjct: 476 RKFIYQDHIQMTANGKIDR 494
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/403 (22%), Positives = 145/403 (35%), Gaps = 51/403 (12%)
Query: 55 DVSATSSPTVGHPNF----------KWVQPESEWDPMA-LNYTSGTTSSPKGVVHCHRGL 103
D S T +P G P +P D +A +N++SGTT PK + H G+
Sbjct: 130 DCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGI 189
Query: 104 FIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNIC--LRKVDVPIIYSV 161
+ + P Q FL P+ + WG GG + L +D ++ +
Sbjct: 190 TRLCLGQSFLAFAP-QMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQL 248
Query: 162 IKHHGVTHICGALVVLNMLSSSPSTKP--LDRPVKILTSG--ASPP--AAVLLRTESLGF 215
I G A + ++ ++ P L ++LT G S P LLR L
Sbjct: 249 IGERGAD---SAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHL 305
Query: 216 VVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSV 275
V + YG TE F +C + L + + KA G + L E G +
Sbjct: 306 V--NGYGPTENTTF--TCCHVVTDDDLEEDDIPIGKAIAGTAVLLL-------DEHGQEI 354
Query: 276 KHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDW-------FYTGDIGVVHSDGYLE 328
++ GEIV + GY D + + + + TGD G L
Sbjct: 355 AEPDRA-GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLR 413
Query: 329 IKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSK 388
R + G + +E P I + AL+ + + CA W
Sbjct: 414 FIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCA-----WTGKA 468
Query: 389 KPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVL 431
+ +A++ +LP + + + + LP TA GK+ + L
Sbjct: 469 DASPQALLR----QLPTWQRPHACVRVEALPLTAHGKLDRAAL 507
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/376 (22%), Positives = 144/376 (38%), Gaps = 43/376 (11%)
Query: 85 YTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVG 144
YTSG+T +PKGV + L T ++ D+ + VFL P + + G
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 145 GT------NICLRKVDVPIIYSVIKHHGVT--HICGALVVLNMLSSSPSTKPLDRPVKIL 196
GT ++ R D +++ ++ + + + ++ +S S L L
Sbjct: 211 GTLWAIDKDMIARPKD---LFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFL 267
Query: 197 TSGASPPAAVL--LRTESLGFVVSHSYGLTETA----GFVVSCAWKSQWNTLADTERARL 250
G P V L + ++YG TE G V+ Q+ +L
Sbjct: 268 FCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP------- 320
Query: 251 KARQGVRTIGLADMD---VVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQE--GSSL 305
+G D ++ E G ++ DG+ +GEIV S+ +GYL E +
Sbjct: 321 --------VGYCKSDCRLLIMKEDG-TIAPDGE-KGEIVIVGPSVSVGYLGSPELTEKAF 370
Query: 306 CMRDNDWFY-TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVAL 364
M D + Y TGD G V +G L R I G + E+E L + +
Sbjct: 371 TMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI 429
Query: 365 VA-QRDKFWGKRPCAFVSLKWELSKK-PTEEAIIEFCRARLPHYMAHKSVIIEDELPKTA 422
V ++ + + V + K+ AI + RLP+YM + + + +P T
Sbjct: 430 VPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTP 489
Query: 423 TGKIQKFVLREIVNAV 438
GK+ + L V A+
Sbjct: 490 NGKVDRKKLLSEVTAL 505
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/376 (22%), Positives = 144/376 (38%), Gaps = 43/376 (11%)
Query: 85 YTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVG 144
YTSG+T +PKGV + L T ++ D+ + VFL P + + G
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 145 GT------NICLRKVDVPIIYSVIKHHGVT--HICGALVVLNMLSSSPSTKPLDRPVKIL 196
GT ++ R D +++ ++ + + + ++ +S S L L
Sbjct: 211 GTLWAIDKDMIARPKD---LFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFL 267
Query: 197 TSGASPPAAVL--LRTESLGFVVSHSYGLTETA----GFVVSCAWKSQWNTLADTERARL 250
G P V L + ++YG TE G V+ Q+ +L
Sbjct: 268 FCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP------- 320
Query: 251 KARQGVRTIGLADMD---VVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQE--GSSL 305
+G D ++ E G ++ DG+ +GEIV S+ +GYL E +
Sbjct: 321 --------VGYCKSDCRLLIMKEDG-TIAPDGE-KGEIVIVGPSVSVGYLGSPELTEKAF 370
Query: 306 CMRDNDWFY-TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVAL 364
M D + Y TGD G V +G L R I G + E+E L + +
Sbjct: 371 TMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI 429
Query: 365 VA-QRDKFWGKRPCAFVSLKWELSKK-PTEEAIIEFCRARLPHYMAHKSVIIEDELPKTA 422
V ++ + + V + K+ AI + RLP+YM + + + +P T
Sbjct: 430 VPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTP 489
Query: 423 TGKIQKFVLREIVNAV 438
GK+ + L V A+
Sbjct: 490 NGKVDRKKLLSEVTAL 505
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 23/111 (20%)
Query: 261 LADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGY--------------LKDQEGSSLC 306
+ ++ ++ P+T + D GEI +S S+ GY +KD E S++
Sbjct: 380 IQEVKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 307 MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNP 357
+R TGD+G +H + L + R KD+II G+N ++E L +P
Sbjct: 438 LR------TGDLGFLHENE-LYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 76 SEWDPMA--------LNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLP 127
S W P + L YTSG+T PKGV H L + ++ + LP
Sbjct: 157 SSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLP 216
Query: 128 MFHENG 133
H+ G
Sbjct: 217 PHHDXG 222
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 147/396 (37%), Gaps = 51/396 (12%)
Query: 58 ATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVS--SLIDWR 115
A P G P P +E D + YTSGTT +PKGV H + + S+ D+
Sbjct: 161 AEPGPVTGAPG-----PGAE-DMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFS 214
Query: 116 IPNQPVFLWTLPMFHENGWSYS----WGMAAVGGTNICLR--KVDVPIIY-SVIKHHGVT 168
++ W L FH + +S WG + G + L P Y +VI GVT
Sbjct: 215 GDDR----WLL--FHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVT 268
Query: 169 HICGALVVLNMLSSSPSTKPLD-RPVKILTSGASPPAAVLLRTESLGFVVS-----HSYG 222
I L+ + D ++ + G A +LR + F + + YG
Sbjct: 269 VINQTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYG 328
Query: 223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQ 282
+TET F + + R G R +G DV ET
Sbjct: 329 ITETTVFTTFEEITEAYLAQDASIIGRALPSFGTRVVGDDGRDVAPGET----------- 377
Query: 283 GEIVFRSGSIMLGYLKDQEGSSLCMRDND---------WFYTGDIGVVHSDGYLEIKDRS 333
GE+ + GYL+ E ++ + ++ TGD+ DG + R+
Sbjct: 378 GELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRA 437
Query: 334 KDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKR-PCAFVSLKWELSKKPTE 392
I G I +++E+ + + + + + + K R CA+V+ + + T
Sbjct: 438 DLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVAREGSAT---TA 494
Query: 393 EAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQK 428
+ + LP YM + LP+T GK+ +
Sbjct: 495 RELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 21/168 (12%)
Query: 72 VQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHE 131
V PE D + +TSG+T PKGV+ HR L + P++ VFL P+
Sbjct: 211 VGPE---DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDE-VFLQCSPV--- 263
Query: 132 NGWSYSWGMAAVG----GTNICLRKVDVPI---IYSVIKHHGVTHICGALVVLNMLSSSP 184
W ++G+ G G L+ P I ++ HGVT + + + N L
Sbjct: 264 -SWD-AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVD-- 319
Query: 185 STKPLDRPVKILTSGASP---PAAVLLRTESLGFVVSHSYGLTETAGF 229
V+ +G P P R + + + YG E+ GF
Sbjct: 320 EVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGF 367
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 323 SDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKR 375
SDG+ R++ V + GG N + VE LY++ +EV L+ +RD F ++
Sbjct: 138 SDGFFY---RNQKVAVIGGGNTA---VEEALYLSNIASEVHLIHRRDGFRAEK 184
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 323 SDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKR 375
SDG+ R++ V + GG N + VE LY++ +EV L+ +RD F ++
Sbjct: 138 SDGFFY---RNQKVAVIGGGNTA---VEEALYLSNIASEVHLIHRRDGFRAEK 184
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 75 ESEWDPMA-LNYTSGTTSSPKGVVHCHRGLFI----ITVSSLIDWR---IPNQPVFLWTL 126
E E+ A L YTSG+T +P GVV H+ + + + D PN + W L
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSW-L 237
Query: 127 PMFHENG 133
P +H+ G
Sbjct: 238 PFYHDXG 244
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 75 ESEWDPMA-LNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRI--------PNQPVFLWT 125
E E+ A L YTSG+T +P GVV H+ + + L+ PN + W
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVR-VNFEQLMSGYFADTDGIPPPNSALVSW- 236
Query: 126 LPMFHENG 133
LP +H+ G
Sbjct: 237 LPFYHDMG 244
>pdb|4AB6|A Chain A, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
pdb|4AB6|B Chain B, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
Length = 222
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 66 HPNFKWVQPE-SEWDPM----ALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQP 120
H +F W+ P E+ PM L+ SG + P G++ HR I + I QP
Sbjct: 17 HTSFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQNGISFQP 76
Query: 121 VFLWTL--------PMFHENGWS 135
+F + + P+ +N W+
Sbjct: 77 LFAYEMVGICAPDHPLAAKNVWT 99
>pdb|4AP8|A Chain A, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|B Chain B, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|C Chain C, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|D Chain D, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
Length = 135
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 328 EIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALV--AQRDKFWGKRPCAFVSLKWE 385
E++++SKDVI E +S EV S L ++P ++L R+ F GK+ +SL++E
Sbjct: 1 EVEEKSKDVINFTAEKLSVDEV-SQLVISPLCGAISLFVGTTRNNFEGKK---VISLEYE 56
Query: 386 LSKKPTEEAIIEFC 399
E + + C
Sbjct: 57 AYLPMAENEVRKIC 70
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 178 NMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVV 231
++L +S ++ +DR K+L GA A+ + L V SYG TET V
Sbjct: 136 SILENSATSGQVDRLGKVLLGGAPVNHALAXQISDLAXPVYQSYGXTETVSHVA 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,255,075
Number of Sequences: 62578
Number of extensions: 546525
Number of successful extensions: 1180
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 91
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)