Query 036544
Match_columns 439
No_of_seqs 167 out of 2256
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 3.5E-70 1.2E-74 542.9 35.0 421 1-438 103-536 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 1.3E-70 4.4E-75 541.5 31.2 414 1-438 82-501 (503)
3 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.9E-69 1.3E-73 535.4 38.2 417 1-437 104-531 (539)
4 3g7s_A Long-chain-fatty-acid-- 100.0 7.5E-70 2.6E-74 542.1 31.4 420 1-437 106-542 (549)
5 1v25_A Long-chain-fatty-acid-C 100.0 4.8E-70 1.7E-74 542.2 27.6 425 1-437 101-536 (541)
6 3r44_A Fatty acyl COA syntheta 100.0 2.9E-69 9.9E-74 533.7 31.2 415 1-437 97-513 (517)
7 2d1s_A Luciferase, luciferin 4 100.0 7.1E-69 2.4E-73 534.3 33.9 417 1-437 106-543 (548)
8 3rix_A Luciferase, luciferin 4 100.0 1.2E-68 4.1E-73 533.5 27.3 418 1-437 104-541 (550)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 9.2E-67 3.1E-71 514.7 36.9 405 1-436 83-503 (504)
10 3etc_A AMP-binding protein; ad 100.0 6.7E-67 2.3E-71 522.6 35.5 418 1-437 140-579 (580)
11 3ipl_A 2-succinylbenzoate--COA 100.0 5.4E-67 1.9E-71 516.3 32.8 408 1-437 77-497 (501)
12 3o83_A Peptide arylation enzym 100.0 2.2E-68 7.4E-73 530.7 22.2 417 1-437 109-540 (544)
13 3ivr_A Putative long-chain-fat 100.0 4.3E-68 1.5E-72 525.0 23.5 413 1-438 85-502 (509)
14 3c5e_A Acyl-coenzyme A synthet 100.0 2.3E-66 7.9E-71 518.0 34.9 416 1-438 128-563 (570)
15 3e7w_A D-alanine--poly(phospho 100.0 3E-66 1E-70 511.9 34.7 409 1-437 81-503 (511)
16 1pg4_A Acetyl-COA synthetase; 100.0 6.8E-66 2.3E-70 522.2 38.1 420 1-437 161-621 (652)
17 3fce_A D-alanine--poly(phospho 100.0 2.2E-66 7.5E-71 513.2 32.2 415 1-439 80-506 (512)
18 3nyq_A Malonyl-COA ligase; A/B 100.0 6.8E-67 2.3E-71 515.0 28.2 400 1-434 97-505 (505)
19 3rg2_A Enterobactin synthase c 100.0 1.2E-65 3.9E-70 518.3 36.4 416 1-437 104-534 (617)
20 1amu_A GRSA, gramicidin synthe 100.0 8.2E-66 2.8E-70 513.3 33.7 400 1-434 118-526 (563)
21 1ry2_A Acetyl-coenzyme A synth 100.0 7.3E-66 2.5E-70 522.2 33.3 422 1-437 168-637 (663)
22 2v7b_A Benzoate-coenzyme A lig 100.0 1.8E-65 6.1E-70 508.7 31.3 413 1-434 102-529 (529)
23 4gr5_A Non-ribosomal peptide s 100.0 2.6E-66 8.9E-71 518.6 22.9 403 1-434 154-568 (570)
24 3l8c_A D-alanine--poly(phospho 100.0 2.3E-65 8E-70 507.1 29.4 412 1-437 83-512 (521)
25 3tsy_A Fusion protein 4-coumar 100.0 9E-66 3.1E-70 544.8 22.5 421 1-437 142-582 (979)
26 4dg8_A PA1221; ANL superfamily 100.0 8.5E-64 2.9E-68 502.9 28.7 395 1-436 106-512 (620)
27 3ite_A SIDN siderophore synthe 100.0 5.7E-63 1.9E-67 494.3 20.1 411 1-438 108-544 (562)
28 2vsq_A Surfactin synthetase su 100.0 3.1E-61 1.1E-65 522.2 30.4 403 1-433 543-956 (1304)
29 3kxw_A Saframycin MX1 syntheta 100.0 2.1E-62 7.3E-67 493.5 18.5 422 1-437 94-567 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 6.5E-61 2.2E-65 481.6 27.8 416 1-437 103-563 (576)
31 4gs5_A Acyl-COA synthetase (AM 100.0 1.4E-58 4.7E-63 434.8 18.4 314 77-437 36-354 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 5.9E-52 2E-56 401.7 23.2 323 75-430 82-430 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 2.5E-51 8.7E-56 398.1 22.2 328 75-432 89-439 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 3.4E-51 1.2E-55 396.5 21.6 325 75-430 87-432 (437)
35 3t5a_A Long-chain-fatty-acid-- 100.0 5.7E-46 1.9E-50 364.7 19.3 318 1-332 111-480 (480)
36 3hgu_A EHPF; phenazine, antibi 100.0 7E-32 2.4E-36 255.2 15.5 234 75-342 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.6 4.5E-16 1.5E-20 118.7 6.7 97 331-429 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.6 1E-15 3.5E-20 116.9 7.5 97 331-428 1-101 (109)
39 4b2g_A GH3-1 auxin conjugating 99.0 8.1E-09 2.8E-13 100.6 15.2 90 274-383 392-493 (609)
40 4eql_A 4-substituted benzoates 99.0 5.2E-09 1.8E-13 101.7 12.9 59 281-356 385-447 (581)
41 4epl_A Jasmonic acid-amido syn 98.9 8.3E-08 2.8E-12 93.1 17.4 90 274-383 387-488 (581)
42 3rix_A Luciferase, luciferin 4 82.2 6.5 0.00022 38.2 10.0 99 76-179 33-135 (550)
43 1v25_A Long-chain-fatty-acid-C 76.1 21 0.00072 34.4 11.4 97 76-178 31-131 (541)
44 3ni2_A 4-coumarate:COA ligase; 75.2 14 0.00048 35.6 9.9 94 75-176 34-131 (536)
45 3g7s_A Long-chain-fatty-acid-- 74.8 22 0.00076 34.3 11.2 102 76-180 32-138 (549)
46 3ivr_A Putative long-chain-fat 73.6 18 0.00062 34.5 10.2 94 76-179 19-116 (509)
47 1t5h_X 4-chlorobenzoyl COA lig 71.8 30 0.001 32.9 11.3 95 76-178 15-115 (504)
48 3etc_A AMP-binding protein; ad 70.2 31 0.0011 33.6 11.1 93 76-173 69-165 (580)
49 3r44_A Fatty acyl COA syntheta 69.2 34 0.0011 32.7 11.0 92 76-175 29-124 (517)
50 1amu_A GRSA, gramicidin synthe 68.4 35 0.0012 33.1 11.0 94 76-179 52-149 (563)
51 3t5a_A Long-chain-fatty-acid-- 68.2 48 0.0017 31.0 11.8 104 76-183 37-149 (480)
52 3c5e_A Acyl-coenzyme A synthet 67.7 40 0.0014 32.7 11.2 99 76-179 56-159 (570)
53 2cvi_A 75AA long hypothetical 67.6 23 0.00079 24.0 7.0 49 346-406 15-63 (83)
54 4fuq_A Malonyl COA synthetase; 67.1 42 0.0014 31.9 11.2 92 77-175 14-109 (503)
55 1pg4_A Acetyl-COA synthetase; 64.3 50 0.0017 32.7 11.4 94 76-173 89-186 (652)
56 2d1s_A Luciferase, luciferin 4 64.3 24 0.00083 34.1 8.9 80 97-177 52-135 (548)
57 2v7b_A Benzoate-coenzyme A lig 63.3 29 0.001 33.2 9.3 92 76-177 36-131 (529)
58 4gr5_A Non-ribosomal peptide s 62.2 45 0.0015 32.3 10.4 91 76-176 88-182 (570)
59 3kxw_A Saframycin MX1 syntheta 61.5 68 0.0023 31.0 11.7 100 76-181 24-130 (590)
60 3ezx_A MMCP 1, monomethylamine 61.1 52 0.0018 27.2 9.2 91 120-210 94-195 (215)
61 3o83_A Peptide arylation enzym 60.3 52 0.0018 31.6 10.5 89 76-174 43-135 (544)
62 2zbc_A 83AA long hypothetical 59.3 25 0.00086 23.6 5.9 49 346-406 15-63 (83)
63 3tsy_A Fusion protein 4-coumar 58.5 50 0.0017 34.6 10.6 93 76-176 74-170 (979)
64 1ry2_A Acetyl-coenzyme A synth 57.2 53 0.0018 32.6 10.1 95 76-174 95-194 (663)
65 1mdb_A 2,3-dihydroxybenzoate-A 56.8 67 0.0023 30.8 10.6 89 76-174 38-130 (539)
66 2djw_A Probable transcriptiona 55.2 38 0.0013 23.3 6.4 49 346-406 15-63 (92)
67 3fce_A D-alanine--poly(phospho 52.5 67 0.0023 30.4 9.7 76 97-173 26-105 (512)
68 3ipl_A 2-succinylbenzoate--COA 47.5 66 0.0023 30.4 8.8 77 97-174 26-103 (501)
69 3l8c_A D-alanine--poly(phospho 44.6 66 0.0023 30.6 8.3 76 97-173 29-108 (521)
70 3gqw_A Fatty acid AMP ligase; 43.6 87 0.003 30.1 9.1 82 96-178 48-140 (576)
71 3ite_A SIDN siderophore synthe 41.6 1.7E+02 0.006 27.9 10.9 95 76-173 33-133 (562)
72 4dg8_A PA1221; ANL superfamily 41.6 1.6E+02 0.0054 28.8 10.6 88 76-173 40-131 (620)
73 3rg2_A Enterobactin synthase c 37.5 1.3E+02 0.0043 29.4 9.2 88 77-174 39-130 (617)
74 2yxb_A Coenzyme B12-dependent 37.3 1.1E+02 0.0039 23.7 7.2 95 120-216 20-123 (161)
75 3e7w_A D-alanine--poly(phospho 34.6 1.8E+02 0.0062 27.4 9.6 76 96-172 25-105 (511)
76 2cg4_A Regulatory protein ASNC 29.1 1.9E+02 0.0064 21.9 8.0 49 346-406 82-130 (152)
77 2i2x_B MTAC, methyltransferase 25.3 1.8E+02 0.0062 24.6 7.0 81 121-207 126-219 (258)
78 1y80_A Predicted cobalamin bin 24.7 2.7E+02 0.0092 22.5 7.8 88 120-207 90-186 (210)
79 3nyq_A Malonyl-COA ligase; A/B 24.5 2.2E+02 0.0074 26.8 8.1 77 96-175 47-124 (505)
80 2vsq_A Surfactin synthetase su 23.8 2.9E+02 0.0099 29.9 9.7 79 97-176 489-571 (1304)
81 1i96_V Translation initiation 20.9 1.4E+02 0.0049 20.6 4.3 60 311-383 25-85 (89)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.5e-70 Score=542.91 Aligned_cols=421 Identities=25% Similarity=0.324 Sum_probs=354.3
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCC----CCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSA----TSSPTVGHPNFKWVQPES 76 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (439)
|||+.++.+++.++++.++++++|++....+.+.+...... . .++.++..... .++.... ....+....+
T Consensus 103 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 176 (536)
T 3ni2_A 103 AANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD----V-KVMCVDSAPDGCLHFSELTQAD-ENEAPQVDIS 176 (536)
T ss_dssp ECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT----C-EEEESSCCCTTCEETHHHHTSC-GGGCCCCCCC
T ss_pred ccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC----c-eEEEecCCCCCccCHHHHhhcc-ccccccCCCC
Confidence 79999999999999999999999999988877776554332 1 23332221100 0001111 1111122367
Q ss_pred CCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh----hcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEec
Q 036544 77 EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI----DWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICLR 151 (439)
Q Consensus 77 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~ 151 (439)
++|+++|+|||||||.||||+++|+++...+..... .+.+.++|++++.+|++|.+|+.. ++.++..|+++++.+
T Consensus 177 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 256 (536)
T 3ni2_A 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP 256 (536)
T ss_dssp TTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS
T ss_pred ccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC
Confidence 889999999999999999999999999877665443 346789999999999999999865 678899999999999
Q ss_pred cCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccC
Q 036544 152 KVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETA 227 (439)
Q Consensus 152 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~ 227 (439)
.+++..+++.++++++|+++++|+++..|.+.. ....++++|.+++||+++++++.++++ .+ ++++++.||+||++
T Consensus 257 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~ 336 (536)
T 3ni2_A 257 KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG 336 (536)
T ss_dssp SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGS
T ss_pred CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccc
Confidence 999999999999999999999999999998876 345678999999999999999999998 45 89999999999998
Q ss_pred cccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccc
Q 036544 228 GFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCM 307 (439)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~ 307 (439)
.+++.+....... .....+++|.|+++. +++|+|+++|.+++.| +.|||+|+|++++.|||++|+.|...|
T Consensus 337 ~~~~~~~~~~~~~------~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~ 407 (536)
T 3ni2_A 337 PVLAMCLAFAKEP------FDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTI 407 (536)
T ss_dssp SEEEECGGGSSSC------CCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred hhhhcccccCCcc------ccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhc
Confidence 7765542111000 011235789999999 9999998899999998 899999999999999999999999999
Q ss_pred cCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCC
Q 036544 308 RDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELS 387 (439)
Q Consensus 308 ~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 387 (439)
..+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|+..++..
T Consensus 408 ~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~ 487 (536)
T 3ni2_A 408 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ 487 (536)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred cCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHhh
Q 036544 388 KKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAV 438 (439)
Q Consensus 388 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~~ 438 (439)
.+.++|+++++++|+.|++|+.++++++||+|++|||+|++|++++.++
T Consensus 488 --~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~l 536 (536)
T 3ni2_A 488 --ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAGI 536 (536)
T ss_dssp --CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC----
T ss_pred --CCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhccC
Confidence 7889999999999999999999999999999999999999999988764
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.3e-70 Score=541.53 Aligned_cols=414 Identities=25% Similarity=0.321 Sum_probs=352.3
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCC--CCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSP--TVGHPNFKWVQPESEW 78 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (439)
|||++++.+++.+++++++++++|++....+.+.+...... ..+..+..... ..+. ..............++
T Consensus 82 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 155 (503)
T 4fuq_A 82 PLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-----ATVETLGPDGR-GSLTDAAAGASEAFATIDRGAD 155 (503)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-----CEEEECCTTSC-SHHHHHHHTSCSCCCCCCCCTT
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-----ceEEEecCCcc-cccchhhhcCCCCcCcCCCCCC
Confidence 79999999999999999999999999876665555443332 12222221110 0000 0000111112235678
Q ss_pred CCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEeccCChHH
Q 036544 79 DPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICLRKVDVPI 157 (439)
Q Consensus 79 ~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~ 157 (439)
|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+.. .+.+++.|+++++.+.+++..
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 235 (503)
T 4fuq_A 156 DLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDK 235 (503)
T ss_dssp SEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHH
T ss_pred CeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHH
Confidence 9999999999999999999999999999888888889999999999999999999765 677889999999999999999
Q ss_pred HHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccccCccccccc
Q 036544 158 IYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTETAGFVVSCA 234 (439)
Q Consensus 158 ~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE~~~~~~~~~ 234 (439)
+++.++ ++|+++++|+++..|.... ....++++|.+++||+++++++.+.+. .+++++++.||+||++..++...
T Consensus 236 ~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 313 (503)
T 4fuq_A 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY 313 (503)
T ss_dssp HHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS
T ss_pred HHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC
Confidence 999998 8999999999999998876 345577899999999999999999988 45999999999999986643221
Q ss_pred ccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccCCCcee
Q 036544 235 WKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFY 314 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~ 314 (439)
.. ....+++|.|+++. +++|+|+++|.+++.| +.|||+|+|++++.|||++|+.|...|..+|||+
T Consensus 314 ~~-----------~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~ 379 (503)
T 4fuq_A 314 DG-----------DRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFI 379 (503)
T ss_dssp SS-----------CCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEE
T ss_pred CC-----------CCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeE
Confidence 10 11124789999998 9999998799999999 8999999999999999999999999999899999
Q ss_pred cCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHH
Q 036544 315 TGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEA 394 (439)
Q Consensus 315 TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 394 (439)
|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++.+++.++++|+..++.. .+.++
T Consensus 380 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~--~~~~~ 457 (503)
T 4fuq_A 380 TGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT--IDEAQ 457 (503)
T ss_dssp EEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--CCHHH
T ss_pred cceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC--CCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987766 78899
Q ss_pred HHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHhh
Q 036544 395 IIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAV 438 (439)
Q Consensus 395 l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~~ 438 (439)
++++++++|+.|++|+.++++++||+|++||++|++|++++.++
T Consensus 458 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 458 VLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp HHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred HHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998765
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.9e-69 Score=535.43 Aligned_cols=417 Identities=22% Similarity=0.301 Sum_probs=349.5
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCc-----hhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSS-----PLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPE 75 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (439)
|+++.++.+++.++++.++++++|++.... +.+..+....+ ..+.++...+.....++..... ........
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 179 (539)
T 1mdb_A 104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP---TLKNIIVAGEAEEFLPLEDLHT-EPVKLPEV 179 (539)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT---TCCCEEEESCCTTSEEGGGCCC-CCCCCCCC
T ss_pred cCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC---CccEEEEcCCccchhhhhhccc-cccccCCC
Confidence 789999999999999999999999987532 23333333332 2333444332111111111111 11111235
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH--HHHHHhhcceEEEeccC
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY--SWGMAAVGGTNICLRKV 153 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~--~~~~~~~g~~~~~~~~~ 153 (439)
+++|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.. ++.++..|+++++.+.+
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~ 259 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSP 259 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSS
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCC
Confidence 6789999999999999999999999999988888777788999999999999999999874 78889999999999889
Q ss_pred ChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccccCccc
Q 036544 154 DVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTETAGFV 230 (439)
Q Consensus 154 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE~~~~~ 230 (439)
++..+++.|+++++|+++++|+++..|.+.. ....++++|.+++||+++++++.+++. .+++++++.||+||++..+
T Consensus 260 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 339 (539)
T 1mdb_A 260 SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNY 339 (539)
T ss_dssp SHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEE
T ss_pred CHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccc
Confidence 9999999999999999999999999987654 455678999999999999999999987 5799999999999965332
Q ss_pred ccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccCC
Q 036544 231 VSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDN 310 (439)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 310 (439)
.... ........++|.|+++..+++|+|+ ++.+++.| +.|||+|+||+++.|||++|+.|...|..+
T Consensus 340 ~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 406 (539)
T 1mdb_A 340 TRLD----------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTED 406 (539)
T ss_dssp CCTT----------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred cCCC----------CcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCC
Confidence 2111 0111234689999987657999997 89999998 899999999999999999999999999889
Q ss_pred CceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCC
Q 036544 311 DWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKP 390 (439)
Q Consensus 311 g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 390 (439)
|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+|+.++++|+..+. . .
T Consensus 407 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-~--~ 483 (539)
T 1mdb_A 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-A--P 483 (539)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-C--C
T ss_pred CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC-C--C
Confidence 999999999999999999999999999999999999999999999999999999999999889999999998743 2 6
Q ss_pred CHHHHHHHHHhc-CCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 391 TEEAIIEFCRAR-LPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 391 ~~~~l~~~~~~~-l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
+.++++++++++ |+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 484 ~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 484 KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 789999999998 99999999999999999999999999999998764
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=7.5e-70 Score=542.06 Aligned_cols=420 Identities=25% Similarity=0.352 Sum_probs=320.4
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVS-ATSSPTVGHPNFKWVQPESEWD 79 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (439)
|||+.++.+++.+++++++++++|++....+.+........ ...++....... ..++...............++|
T Consensus 106 pl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 181 (549)
T 3g7s_A 106 PINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG----VERVFVVGGEVNSLSEVMDSGSEDFENVKVNPEED 181 (549)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC----CCEEEEETCSSSCHHHHHHHSCSCCCCCCCCTTTS
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC----CcEEEEeCCCCcCHHHHHhcCccccccccCCCCCC
Confidence 79999999999999999999999999988888777766554 444554432211 0011111111111112233489
Q ss_pred CeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEeccCChHHHH
Q 036544 80 PMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIY 159 (439)
Q Consensus 80 ~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (439)
+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|.+++..++.++..|+++++.+.+++..++
T Consensus 182 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~ 261 (549)
T 3g7s_A 182 VALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLA 261 (549)
T ss_dssp EEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHH
T ss_pred EEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHH
Confidence 99999999999999999999999999988888888999999999999999999988888889999999999999999999
Q ss_pred HHHHhhCceeeechHHHHHHHhCCC----CCCCCCCCeEEEEeCCCCcHHHHHhhhh-----cC---CeeeccCCccccC
Q 036544 160 SVIKHHGVTHICGALVVLNMLSSSP----STKPLDRPVKILTSGASPPAAVLLRTES-----LG---FVVSHSYGLTETA 227 (439)
Q Consensus 160 ~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~l~~i~~~G~~~~~~~~~~~~~-----~~---~~v~~~yG~tE~~ 227 (439)
+.|+++++|+++++|+++..|.... ....++++|.+++||+++++++.+++.+ ++ +++++.||+||++
T Consensus 262 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 341 (549)
T 3g7s_A 262 ENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341 (549)
T ss_dssp HHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred HHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence 9999999999999999999997654 2256789999999999999999998873 45 8999999999998
Q ss_pred cccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccc
Q 036544 228 GFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCM 307 (439)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~ 307 (439)
.+++..... ......++|.|++++ +++|+|+++|.+++.| +.|||+|+|++++.|||++|+.|...|
T Consensus 342 ~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f 408 (549)
T 3g7s_A 342 PMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQECW 408 (549)
T ss_dssp SEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTSE
T ss_pred hhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhhh
Confidence 776654311 112345789999998 9999997799999998 899999999999999999999999998
Q ss_pred c--CCC--ceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEec
Q 036544 308 R--DND--WFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLK 383 (439)
Q Consensus 308 ~--~~g--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 383 (439)
. .+| ||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++.+++.++++|++.
T Consensus 409 ~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~ 488 (549)
T 3g7s_A 409 WYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLK 488 (549)
T ss_dssp EECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEEC
T ss_pred hccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEEC
Confidence 3 477 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 384 WELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
++.....+.++|+++++++|+.|++|+.++++++||+|++||++|++|+++..+
T Consensus 489 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 489 PEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp STTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC------------------
T ss_pred CCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence 774333788999999999999999999999999999999999999999998764
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.8e-70 Score=542.19 Aligned_cols=425 Identities=30% Similarity=0.462 Sum_probs=316.7
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCC-----CCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSA-----TSSPTVGHPNFKWVQPE 75 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (439)
|||++++.+++.++|+.++++++|++.+..+.+..+....+ ..+.++.++..... .++...... ....
T Consensus 101 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 173 (541)
T 1v25_A 101 TANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK---TVQHFVVMDEKAPEGYLAYEEALGEEAD----PVRV 173 (541)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS---SCCEEEESSSCCCTTCEEHHHHCCSCCC----CCCC
T ss_pred ecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC---CccEEEEecCCCCcccccHHHHhhccCC----cccC
Confidence 79999999999999999999999999887777776655443 23334443322100 001111111 1235
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHh--hhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSS--LIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK- 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~- 152 (439)
+++|+++|+|||||||.||||+++|+++...+... ...+++.++|++++.+|++|.+++...+.++..|+++++.+.
T Consensus 174 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~ 253 (541)
T 1v25_A 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR 253 (541)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTC
T ss_pred CCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCC
Confidence 67899999999999999999999999998766553 345678899999999999999998777888999999998864
Q ss_pred CChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhhhcCCeeeccCCccccCccc
Q 036544 153 VDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFV 230 (439)
Q Consensus 153 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 230 (439)
+++..+++.++++++|+++++|+++..|.+.. ....++++|.+++||+++++++.++++.+++++++.||+||++.++
T Consensus 254 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~ 333 (541)
T 1v25_A 254 LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVV 333 (541)
T ss_dssp CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEE
T ss_pred CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccce
Confidence 69999999999999999999999999997654 2456789999999999999999999976799999999999998776
Q ss_pred ccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccCC
Q 036544 231 VSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDN 310 (439)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 310 (439)
+.+.....+.............++|.|++++ +++|+|+ +|.+++.++++.|||+|+||+++.|||++|+.|...|..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~ 411 (541)
T 1v25_A 334 VQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD 411 (541)
T ss_dssp EECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTT
T ss_pred ecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCC
Confidence 6543222111112222223457899999998 9999997 7888886433689999999999999999999999999889
Q ss_pred CceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCC
Q 036544 311 DWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKP 390 (439)
Q Consensus 311 g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 390 (439)
|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|++. +.. .
T Consensus 412 g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~--~ 488 (541)
T 1v25_A 412 GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEK--P 488 (541)
T ss_dssp SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------
T ss_pred CCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCC--C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 322 5
Q ss_pred CHHHHHHHHHh-cCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 391 TEEAIIEFCRA-RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 391 ~~~~l~~~~~~-~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 489 ~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 489 TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred CHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 67889999999 899999999999999999999999999999998764
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.9e-69 Score=533.66 Aligned_cols=415 Identities=31% Similarity=0.394 Sum_probs=349.1
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.+++++++++++|++....+.+..+...... ...++.+.......+....... ..+.....++|+
T Consensus 97 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ 172 (517)
T 3r44_A 97 PINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP---PGTVTDWIGADSLAERLRSAAA-DEPAVECGGDDN 172 (517)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSC---CTTCCEEEEHHHHHHHHHHCCC-CCCCCCCCTTSE
T ss_pred ecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCC---ccEEEEccCcccHHHHhhccCc-CCCCCCCCCCCe
Confidence 799999999999999999999999999888777766554432 2222222111000000000111 111223577899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEeccCChHHHHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYS 160 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (439)
++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...+.++..|+++++.+.+++..+++
T Consensus 173 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~ 252 (517)
T 3r44_A 173 LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWS 252 (517)
T ss_dssp EEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHH
T ss_pred EEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHH
Confidence 99999999999999999999999998888888889999999999999999999987666666999999999999999999
Q ss_pred HHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhhhcCCeeeccCCccccCccccccccccc
Q 036544 161 VIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQ 238 (439)
Q Consensus 161 ~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 238 (439)
.++++++|+++++|+++..|.... ....++++|.+++||+++++++.+.+...++++++.||+||+++.++......
T Consensus 253 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~- 331 (517)
T 3r44_A 253 LIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSED- 331 (517)
T ss_dssp HHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGG-
T ss_pred HHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCcc-
Confidence 999999999999999999998765 34567899999999999999999999877999999999999987665543211
Q ss_pred ccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccCCCceecCce
Q 036544 239 WNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDI 318 (439)
Q Consensus 239 ~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~ 318 (439)
.....+++|.|.++. +++|+|+ ++.+++.+ .|||+|+|++++.|||++|+.|...|. +|||+|||+
T Consensus 332 --------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~-~g~~~TGDl 397 (517)
T 3r44_A 332 --------ALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDI 397 (517)
T ss_dssp --------TTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEE-TTEEEEEEE
T ss_pred --------ccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhc-CCCEeccee
Confidence 112235789999998 9999997 78887765 599999999999999999999999997 999999999
Q ss_pred EEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHHHHH
Q 036544 319 GVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEF 398 (439)
Q Consensus 319 ~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 398 (439)
|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++| ..++.. .+.++|+++
T Consensus 398 ~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~--~~~~~l~~~ 474 (517)
T 3r44_A 398 GEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNE--VSEQQIVEY 474 (517)
T ss_dssp EEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTT--CCHHHHHHH
T ss_pred EEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCC--CCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999899888888 444444 688999999
Q ss_pred HHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 399 CRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 399 ~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
++++|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 475 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 475 CGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp HHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGG
T ss_pred HHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHh
Confidence 999999999999999999999999999999999999875
No 7
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7.1e-69 Score=534.30 Aligned_cols=417 Identities=21% Similarity=0.266 Sum_probs=350.7
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCC------CCCCCCCCCCC-CCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVS------ATSSPTVGHPN-FKWVQ 73 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~ 73 (439)
|||+.++.+++.++|++++++++|++....+.+.++....+ ....++.++.... ..++....... .....
T Consensus 106 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (548)
T 2d1s_A 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT---TIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASS 182 (548)
T ss_dssp EECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST---TCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGG
T ss_pred ccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC---CCCEEEEeCCcccccccccHHHHHhcCccccCCccc
Confidence 78999999999999999999999999988777666543332 1223333332110 00000000000 11000
Q ss_pred CC-----CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhh---cCCCCCCEEEEcCCccchhhhHH-HHHHHhhc
Q 036544 74 PE-----SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLID---WRIPNQPVFLWTLPMFHENGWSY-SWGMAAVG 144 (439)
Q Consensus 74 ~~-----~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g 144 (439)
.. .++|+++|+|||||||.||+|+++|+++...+...... +++.++|++++.+|++|.+|+.. ++.++ .|
T Consensus 183 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G 261 (548)
T 2d1s_A 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CG 261 (548)
T ss_dssp CCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TT
T ss_pred ccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cC
Confidence 01 23899999999999999999999999998887776655 67889999999999999999876 45555 99
Q ss_pred ceEEEeccCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeecc
Q 036544 145 GTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHS 220 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~ 220 (439)
+++++.+.+++..+++.|+++++|+++++|+++..|.+.. ....++++|.+++||+++++++.+++. .+ ++++++.
T Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~ 341 (548)
T 2d1s_A 262 FRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQG 341 (548)
T ss_dssp CEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEE
T ss_pred cEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeec
Confidence 9999998899999999999999999999999999998765 334678999999999999999999988 45 6889999
Q ss_pred CCccccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCc
Q 036544 221 YGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQ 300 (439)
Q Consensus 221 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~ 300 (439)
||+||++..++.+... ....+++|.|.++. +++|+|++++.+++.| +.|||+|+|++++.|||++|
T Consensus 342 YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~ 407 (548)
T 2d1s_A 342 YGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNP 407 (548)
T ss_dssp EECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCH
T ss_pred cccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCCh
Confidence 9999998766543211 01235789999998 9999997799999998 89999999999999999999
Q ss_pred ccccccccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEE
Q 036544 301 EGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFV 380 (439)
Q Consensus 301 ~~~~~~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 380 (439)
+.|...|..+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+|+.++++|
T Consensus 408 ~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~v 487 (548)
T 2d1s_A 408 EATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVV 487 (548)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred HHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEE
Confidence 99999998799999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeccCCCCCCCHHHHHHHHHhcCCCccccc-eEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 381 SLKWELSKKPTEEAIIEFCRARLPHYMAHK-SVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
++.++.. .+.++|+++++++|+.|++|+ .++++++||+|++||++|++|++++.+
T Consensus 488 v~~~~~~--~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 488 VLESGKN--MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EECTTCC--CCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEcCCCC--CCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 9887654 678999999999999999999 999999999999999999999999875
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.2e-68 Score=533.53 Aligned_cols=418 Identities=21% Similarity=0.290 Sum_probs=253.7
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCC----------CCCC--CC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSP----------TVGH--PN 68 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~ 68 (439)
|||+.++.+++.++++.++++++|++.+..+.+..+....+ ....++.++......... .... ..
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP---IIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYD 180 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT---TCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTT
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC---CcceEEEEcCCccccCcccHHHHhhccccccccccc
Confidence 79999999999999999999999999988887777666554 234444443321110000 0000 01
Q ss_pred CCCCCCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhh---cCCCCCCEEEEcCCccchhhhHHHHHHHhhcc
Q 036544 69 FKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLID---WRIPNQPVFLWTLPMFHENGWSYSWGMAAVGG 145 (439)
Q Consensus 69 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~ 145 (439)
..+.....++|+++|+|||||||.||+|+++|+++...+...... +++.+++++++.+|++|.+|+...+.++..|+
T Consensus 181 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~ 260 (550)
T 3rix_A 181 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGF 260 (550)
T ss_dssp CCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCC
Confidence 111122345789999999999999999999999998777666544 46788999999999999999988888999999
Q ss_pred eEEEeccCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCe-eeccC
Q 036544 146 TNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SLGFV-VSHSY 221 (439)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~-v~~~y 221 (439)
++++.+.+++..+++.|+++++|+++++|+++..|+... ....++++|.+++||+++++++.+++. .++.. +++.|
T Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~Y 340 (550)
T 3rix_A 261 RVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGY 340 (550)
T ss_dssp EEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCcccccc
Confidence 999999999999999999999999999999999998876 445678999999999999999999998 56764 89999
Q ss_pred CccccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcc
Q 036544 222 GLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQE 301 (439)
Q Consensus 222 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~ 301 (439)
|+||+++.++.+.... ...+++|.|.+++ +++|+|+++|.+++.| +.|||+|+|++++.|||++|+
T Consensus 341 G~TE~~~~~~~~~~~~-----------~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~ 406 (550)
T 3rix_A 341 GLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPE 406 (550)
T ss_dssp ECGGGSSEEEECCTTC-----------CCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHH
T ss_pred CcCccccceecCCCCC-----------CCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChh
Confidence 9999987766543211 1235789999998 9999998889999998 899999999999999999999
Q ss_pred cccccccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEE
Q 036544 302 GSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVS 381 (439)
Q Consensus 302 ~~~~~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 381 (439)
.|...|..+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+|+.++++|+
T Consensus 407 ~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv 486 (550)
T 3rix_A 407 ATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVV 486 (550)
T ss_dssp HHHHHBCTTSCEEEEEEEEECTTCCEEEC---------------------------------------------------
T ss_pred hhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHhcCCCccccc-eEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 382 LKWELSKKPTEEAIIEFCRARLPHYMAHK-SVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
..++.. .+.++++++++++++.++.|. .++++++||+|++||++|++|++++.+
T Consensus 487 ~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 487 LEHGKT--MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp ---------------------------------------------------------
T ss_pred ecCCCC--CCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHh
Confidence 987755 678899999999999886554 799999999999999999999998864
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=9.2e-67 Score=514.69 Aligned_cols=405 Identities=24% Similarity=0.333 Sum_probs=335.0
Q ss_pred CcccCCChHHHHHHHhhCCceEEEE--eCCCchhH-HHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFV--DYQSSPLA-LAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESE 77 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (439)
|||+.++.+++.+++++++++++|+ +....+.+ ... . ..+ ++.+.+......... ..+... .....+
T Consensus 83 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~---~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 152 (504)
T 1t5h_X 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----S---GAR-IIFLGDLVRDGEPYS-YGPPIE-DPQREP 152 (504)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----C---CCE-EEEGGGTEETTEECC-CSCCCC-CCCCCT
T ss_pred ecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----c---cce-eEEecchhhcCcccc-cCCccC-CCCCCC
Confidence 7899999999999999999999999 66544433 221 1 111 222211100000000 001111 123567
Q ss_pred CCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCC--CCCCEEEEcCCccchhhhH-HHHHHHhhcceEEEeccCC
Q 036544 78 WDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRI--PNQPVFLWTLPMFHENGWS-YSWGMAAVGGTNICLRKVD 154 (439)
Q Consensus 78 ~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~-~~~~~~~~g~~~~~~~~~~ 154 (439)
+|+++|+|||||||.||||+++|+++...+......+++ .+++++++.+|++|..|+. .++.++..|+++++.+.++
T Consensus 153 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~ 232 (504)
T 1t5h_X 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFR 232 (504)
T ss_dssp TSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCC
T ss_pred CCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCC
Confidence 899999999999999999999999999888777766777 7889999999999999985 4788999999999999999
Q ss_pred hHHHHHHHHhhCceeeechHHHHHHHhCCC----CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccccCcc
Q 036544 155 VPIIYSVIKHHGVTHICGALVVLNMLSSSP----STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTETAGF 229 (439)
Q Consensus 155 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE~~~~ 229 (439)
+..+++.|+++++|+++++|+++..|.... ....++++|.+++||+++++++.++++ .+++.+++.||+||++ .
T Consensus 233 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~ 311 (504)
T 1t5h_X 233 PVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-N 311 (504)
T ss_dssp HHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-E
T ss_pred HHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-c
Confidence 999999999999999999999999997643 334678999999999999999999998 5689999999999993 2
Q ss_pred cccccccccccccchhHHHHhhhccCceeccccccccccCCCC---ccccCCCCcceeEEEe-cCcccccccCCcccccc
Q 036544 230 VVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETG---MSVKHDGQSQGEIVFR-SGSIMLGYLKDQEGSSL 305 (439)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~---~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~ 305 (439)
+.... . ...++.|.|.++. +++|+|. ++ .+++.| +.|||+|+ |+.++.|||++|+.|..
T Consensus 312 ~~~~~-~------------~~~~~~g~p~~~~-~~~i~~~-~~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~ 374 (504)
T 1t5h_X 312 SLYMR-Q------------PKTGTEMAPGFFS-EVRIVRI-GGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAE 374 (504)
T ss_dssp EEEEE-S------------CSSSSEEBCCTTC-CEEEECT-TSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHH
T ss_pred ccccc-C------------CCCCccccCCCCC-ceeEEec-cCCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhh
Confidence 22111 0 1124678898888 9999997 45 888888 88999999 99999999999999999
Q ss_pred cccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccC
Q 036544 306 CMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWE 385 (439)
Q Consensus 306 ~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 385 (439)
.|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+|+.++++|+++++
T Consensus 375 ~f~-~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 453 (504)
T 1t5h_X 375 KLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG 453 (504)
T ss_dssp HEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT
T ss_pred hhc-CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC
Confidence 996 9999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHh-cCCCccccceEEeecccCCCCCCcccHHHHHHHHH
Q 036544 386 LSKKPTEEAIIEFCRA-RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVN 436 (439)
Q Consensus 386 ~~~~~~~~~l~~~~~~-~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~ 436 (439)
.. .+.+++++++++ +|+.|++|+.++++++||+|++|||+|++|++++.
T Consensus 454 ~~--~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 454 ET--LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CC--CCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cC--cCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 55 678999999999 89999999999999999999999999999999875
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=6.7e-67 Score=522.60 Aligned_cols=418 Identities=19% Similarity=0.235 Sum_probs=330.0
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCc--hhHHHHhccCCCCCCC-CccEEEccCCCCC-----CCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSS--PLALAALSLFPSNTIL-PKPVLIHDDVSAT-----SSPTVGHPNFKWV 72 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 72 (439)
||++.++.+++.++++.++++++|++.+.. +.+.++....+. . ..++.+....... +......+....+
T Consensus 140 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (580)
T 3etc_A 140 PATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGD---IPLKKAKVGGDVLEGWIDFRKELEESSPIFERP 216 (580)
T ss_dssp ECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCS---CCCEEEEESSSCCTTCEEHHHHHHHSCSCCCCC
T ss_pred eCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCC---cceEEEEeCCccccccccHHHHHhhCCcccccC
Confidence 799999999999999999999999998765 555555443331 2 2333333221110 0001111111111
Q ss_pred ---CCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEE
Q 036544 73 ---QPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNI 148 (439)
Q Consensus 73 ---~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~ 148 (439)
....++|+++|+|||||||.||+|+++|.++...+.......++.+++++++..|++|..+... ++.++..|++++
T Consensus 217 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 296 (580)
T 3etc_A 217 TGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVF 296 (580)
T ss_dssp CGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEE
T ss_pred ccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEE
Confidence 2357789999999999999999999999998877776666678899999999999999888765 677888888888
Q ss_pred Ee--ccCChHHHHHHHHhhCceeeechHHHHHHHhCCC-CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCcc
Q 036544 149 CL--RKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP-STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLT 224 (439)
Q Consensus 149 ~~--~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~t 224 (439)
+. ..+++..+++.|+++++|+++++|+++..|.... ....++++|.+++||+++++++.+++. .+++++++.||+|
T Consensus 297 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~T 376 (580)
T 3etc_A 297 VYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQT 376 (580)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCT
T ss_pred EecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccc
Confidence 87 4689999999999999999999999999998865 445678999999999999999999998 4699999999999
Q ss_pred ccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEec-----CcccccccCC
Q 036544 225 ETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRS-----GSIMLGYLKD 299 (439)
Q Consensus 225 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~-----~~~~~gy~~~ 299 (439)
|++..++..+... ...+++|.|.+++ +++|+|+ +|.+++.| +.|||+|+| +.++.|||++
T Consensus 377 E~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~ 441 (580)
T 3etc_A 377 ETVVTIATFPWME-----------PKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKD 441 (580)
T ss_dssp TSSCCEECCTTSC-----------CCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEECTTCCCTTCCCEETTC
T ss_pred cccceeecCCCCC-----------CCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEEEEecCCCCCCeeeccccCC
Confidence 9987665443211 1235789999999 9999998 79999998 899999997 7899999999
Q ss_pred cccccccccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEE
Q 036544 300 QEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAF 379 (439)
Q Consensus 300 ~~~~~~~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~ 379 (439)
|+.|...|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+|+.++++
T Consensus 442 p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~ 520 (580)
T 3etc_A 442 PERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKAT 520 (580)
T ss_dssp HHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred HhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEE
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCC-CCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 380 VSLKWELSKK-PTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 380 v~~~~~~~~~-~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
|++.++.... ...++|+++++++|+.|++|+.++++++||+|++|||+|++|++++.+
T Consensus 521 vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 521 IVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred EEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 9998775421 234789999999999999999999999999999999999999998764
No 11
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.4e-67 Score=516.35 Aligned_cols=408 Identities=25% Similarity=0.346 Sum_probs=321.2
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEE---cc----------CCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLI---HD----------DVSATSSPTVGHP 67 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~~ 67 (439)
|||++++.+++.++++.++++++|++............... ...+... .. .............
T Consensus 77 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (501)
T 3ipl_A 77 MINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD----IEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESP 152 (501)
T ss_dssp ECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC------------------------------------CCH
T ss_pred ecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccccc----ceeeeeecccccccccccccccccchhhccccCCc
Confidence 79999999999999999999999999865543321111000 1100000 00 0000000000000
Q ss_pred CCCCCCCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceE
Q 036544 68 NFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTN 147 (439)
Q Consensus 68 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~ 147 (439)
........+++|+++|+|||||||.||+|+++|+++...+......+++.++|++++.+|++|.+|+..++.++..|+++
T Consensus 153 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~ 232 (501)
T 3ipl_A 153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTV 232 (501)
T ss_dssp HHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEE
T ss_pred ccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceE
Confidence 01111235778999999999999999999999999999888888888999999999999999999998888999999999
Q ss_pred EEeccCChHHHHHHHHhhCceeeechHHHHHHHhCCCCCCCCCCCeEEEEeCCCCcHHHHHhhhhcCCeeeccCCccccC
Q 036544 148 ICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETA 227 (439)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~l~~i~~~G~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 227 (439)
++.+.+++..+++.++++++|+++++|+++..|......... ++|.+++||+++++++.+++.++++++++.||+||++
T Consensus 233 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~ 311 (501)
T 3ipl_A 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY-NLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETC 311 (501)
T ss_dssp EECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT-TCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGT
T ss_pred EeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC-cccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccc
Confidence 999999999999999999999999999999999876533322 8999999999999999999988899999999999998
Q ss_pred cccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccc
Q 036544 228 GFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCM 307 (439)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~ 307 (439)
+.+..+. .........++|.|.++. +++|+|++ .+ +.|||+|+|+.++.|||++++.+.. |
T Consensus 312 ~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~~~~~t~~-~ 372 (501)
T 3ipl_A 312 SQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLYPTDLTGT-F 372 (501)
T ss_dssp EEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSBSTTCCCS-E
T ss_pred cceeecC---------ccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCcChhhcch-h
Confidence 7554432 111223345789999998 99999974 23 6799999999999999999998887 6
Q ss_pred cCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCC
Q 036544 308 RDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELS 387 (439)
Q Consensus 308 ~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 387 (439)
. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+|+.++++++...+
T Consensus 373 ~-~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~-- 449 (501)
T 3ipl_A 373 E-NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD-- 449 (501)
T ss_dssp E-TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC--
T ss_pred c-CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC--
Confidence 5 8999999999999999999999999999999999999999999999999999999999999999999999887433
Q ss_pred CCCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 388 KKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 388 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
.+.++|+++++++|+.|++|+.++++++||+|++||++|++|++...+
T Consensus 450 --~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 450 --ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp --CCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred --CCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 678999999999999999999999999999999999999999988765
No 12
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.2e-68 Score=530.69 Aligned_cols=417 Identities=19% Similarity=0.263 Sum_probs=254.3
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCc-----hhHHHHhccCCCCCCCCccEEEccCCCCC---CCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSS-----PLALAALSLFPSNTILPKPVLIHDDVSAT---SSPTVGHPNFKWV 72 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 72 (439)
|+++.++.+++.++++.++++++|++.... .....+..... ....++......... ++...........
T Consensus 109 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (544)
T 3o83_A 109 NALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL---SPEIILMLNHQATDFGLLDWIETPAETFVDF 185 (544)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC---CCSEEEEETCCTTSEEHHHHHHSCCSSCCCC
T ss_pred cCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc---CcceEEEecCCccccchhhhhhccccccccc
Confidence 789999999999999999999999998654 33333333222 133334333221100 0001111111111
Q ss_pred CCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH--HHHHHhhcceEEEe
Q 036544 73 QPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY--SWGMAAVGGTNICL 150 (439)
Q Consensus 73 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~--~~~~~~~g~~~~~~ 150 (439)
...+++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|.+++.. ++.++..|+++++.
T Consensus 186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 2356789999999999999999999999999999988888889999999999999999998864 78889999999999
Q ss_pred ccCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccccC
Q 036544 151 RKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTETA 227 (439)
Q Consensus 151 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE~~ 227 (439)
+.+++..+++.++++++|+++++|+++..|++.. ....++++|.+++||+++++++.+++. .+++++++.||+||++
T Consensus 266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 345 (544)
T 3o83_A 266 PNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL 345 (544)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSC
T ss_pred CCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecccccc
Confidence 9999999999999999999999999999987654 234567999999999999999999998 4599999999999987
Q ss_pred cccccccccccccccchhHHHHhhhccCcee-ccccccccccCCCCccccCCCCcceeEEEecCcccccccCCccccccc
Q 036544 228 GFVVSCAWKSQWNTLADTERARLKARQGVRT-IGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLC 306 (439)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~ 306 (439)
..+.... ........++|.|+ ++. +++|+|+ ++.+++.| +.|||+|+||+++.|||++|+.|...
T Consensus 346 ~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~ 411 (544)
T 3o83_A 346 VNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDE-QYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQV 411 (544)
T ss_dssp EEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECT-TSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHH
T ss_pred ceeecCC----------CchhhccCCCceecCCCc-EEEEECC-CCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhh
Confidence 5443321 11123346789997 565 9999996 89999998 89999999999999999999999999
Q ss_pred ccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCC
Q 036544 307 MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWEL 386 (439)
Q Consensus 307 ~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 386 (439)
|..+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+|+.++++|+..+.
T Consensus 412 f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~- 490 (544)
T 3o83_A 412 FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP- 490 (544)
T ss_dssp BCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------------------------
T ss_pred CCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCC-
Confidence 9889999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCCHHHHHHHHHh-cCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 387 SKKPTEEAIIEFCRA-RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 387 ~~~~~~~~l~~~~~~-~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
. .+.+++++++++ .|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 491 ~--~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 491 E--LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------
T ss_pred C--CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 2 567889999998 799999999999999999999999999999998875
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.3e-68 Score=525.05 Aligned_cols=413 Identities=23% Similarity=0.328 Sum_probs=253.8
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVS-ATSSPTVGHPNFKWVQPESEWD 79 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (439)
||+++++.+++.++++.++++++|++....+.+........ ....++.+.+... ...+...............++|
T Consensus 85 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 161 (509)
T 3ivr_A 85 PVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG---GVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAAD 161 (509)
T ss_dssp ECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS---SCCEEEESSCCCSSCEEGGGTCCCSCCCCCCCCTTS
T ss_pred ecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC---CceEEEEcCCCCcChhhHhhccCCCCCCcCCCCccc
Confidence 79999999999999999999999999988777555554443 2344444433211 1111110111111123467889
Q ss_pred CeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEeccCChHHHH
Q 036544 80 PMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIY 159 (439)
Q Consensus 80 ~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (439)
+++|+|||||||.||+|+++|+++...+......+++.++|++++.+|++|.+|+...+.++..|++.++...+++..++
T Consensus 162 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~ 241 (509)
T 3ivr_A 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAA 241 (509)
T ss_dssp EEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred cEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHH
Confidence 99999999999999999999999999888888888999999999999999999998877777777777777789999999
Q ss_pred HHHHhhCceeeechHHHHHHHhCCCCCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccCcccccccccc
Q 036544 160 SVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETAGFVVSCAWKS 237 (439)
Q Consensus 160 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~~~~~~~~~~~ 237 (439)
+.|+++++|+++++|+++..|+.......+++++.++.+|++ ...+++. .+ ++++++.||+||++++++.+....
T Consensus 242 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~ 318 (509)
T 3ivr_A 242 RDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD 318 (509)
T ss_dssp HHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG
T ss_pred HHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc
Confidence 999999999999999999999887666677899999999987 6666666 45 899999999999987766543211
Q ss_pred cccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccCCCceecCc
Q 036544 238 QWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGD 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 317 (439)
....+|.|.++. +++|+|+ ++.+++.| +.|||+|+|++++.|||++|+.|...|. +|||+|||
T Consensus 319 ------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGD 381 (509)
T 3ivr_A 319 ------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGD 381 (509)
T ss_dssp ------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEE
T ss_pred ------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhh-cCCccccc
Confidence 112489999998 9999998 79999998 8999999999999999999999999998 99999999
Q ss_pred eEEEcCCCcEEEeccc--CceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHH
Q 036544 318 IGVVHSDGYLEIKDRS--KDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAI 395 (439)
Q Consensus 318 ~~~~~~dg~~~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 395 (439)
+|++++||+++++||. +|+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|+..++.. .+.++|
T Consensus 382 l~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~--~~~~~l 459 (509)
T 3ivr_A 382 MGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES--IAADAL 459 (509)
T ss_dssp EEEECTTSCEEEEEEC----------------------------------------------------------------
T ss_pred EEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC--CCHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999887655 678899
Q ss_pred HHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHhh
Q 036544 396 IEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAV 438 (439)
Q Consensus 396 ~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~~ 438 (439)
+++++++|+.|++|+.++++++||+|++|||+|++|++++.+.
T Consensus 460 ~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 460 AEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -------------------------------------------
T ss_pred HHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998753
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.3e-66 Score=518.01 Aligned_cols=416 Identities=21% Similarity=0.240 Sum_probs=347.0
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCC-----CCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSAT-----SSPTVGHPNFKWVQPE 75 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 75 (439)
|||++++.+++.++++.++++++|++....+.+.++....+ ..+.++.+.+..... ++....... ......
T Consensus 128 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 203 (570)
T 3c5e_A 128 PGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP---SLRIKLLVSEKSCDGWLNFKKLLNEASTT-HHCVET 203 (570)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT---TCCEEEEESSSCCTTSEEHHHHHHHSCSC-CCCCCC
T ss_pred ecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC---ceeEEEEecccCccccccHHHHhhccccc-ccccCC
Confidence 79999999999999999999999999988877776655443 233444443311100 000001111 111235
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHH--HHHHhhhhcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEec-
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFI--ITVSSLIDWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICLR- 151 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~--~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~- 151 (439)
.++|+++|+|||||||.||||+++|+ +.. ..... ..+++.++|++++.+|++|..++.. ++.++..|+++++..
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 281 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLL 281 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecC
Confidence 67899999999999999999999999 444 33333 5678899999999999999999874 778889999999886
Q ss_pred -cCChHHHHHHHHhhCceeeechHHHHHHHhCCC-CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccccCc
Q 036544 152 -KVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP-STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTETAG 228 (439)
Q Consensus 152 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE~~~ 228 (439)
.+++..+++.|+++++|+++++|+++..|.+.. ....++++|.++++|+++++++.+++. .+++++++.||+||++.
T Consensus 282 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~ 361 (570)
T 3c5e_A 282 PKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGL 361 (570)
T ss_dssp SSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEE
T ss_pred CCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccc
Confidence 689999999999999999999999999998764 344578999999999999999999988 46999999999999986
Q ss_pred ccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEe-----cCcccccccCCcccc
Q 036544 229 FVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFR-----SGSIMLGYLKDQEGS 303 (439)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~ 303 (439)
.++..... ....+++|.|.+++ +++|+|+ +|.+++.| +.|||+|+ |++++.|||++|+.|
T Consensus 362 ~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t 426 (570)
T 3c5e_A 362 TCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKT 426 (570)
T ss_dssp EEECCTTS-----------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHH
T ss_pred ceecCccc-----------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHh
Confidence 55433211 01225789999998 9999997 79999998 89999999 999999999999999
Q ss_pred cccccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEec
Q 036544 304 SLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLK 383 (439)
Q Consensus 304 ~~~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 383 (439)
...|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|++.
T Consensus 427 ~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~ 505 (570)
T 3c5e_A 427 AANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLA 505 (570)
T ss_dssp HHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred hhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEEC
Confidence 99997 89999999999999999999999999999999999999999999999999999999999988899999999987
Q ss_pred cCCCC---CCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHhh
Q 036544 384 WELSK---KPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAV 438 (439)
Q Consensus 384 ~~~~~---~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~~ 438 (439)
++... +...++|+++++++|+.|++|+.++++++||+|++||++|++|++.+.++
T Consensus 506 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 506 SQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred CcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 65421 12357899999999999999999999999999999999999999987644
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3e-66 Score=511.89 Aligned_cols=409 Identities=20% Similarity=0.206 Sum_probs=342.3
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.++++.++++++|++...... ... .....+...+ +...............++|+
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 145 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG---QQIQTVSAEE------LLENEGGSVSQDQWVKEHET 145 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC---CSSCEEEHHH------HHTSCSCCCCGGGSCCTTSE
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc---cccceecHhh------hhccccCCccccccCCCCCe
Confidence 78999999999999999999999997643210 010 0011111111 11111111111223567899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc---CChHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK---VDVPI 157 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~---~~~~~ 157 (439)
++|+|||||||.||+|+++|+++...+......+++.++|++++.+|++|..++..++.++..|+++++.+. +++..
T Consensus 146 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 225 (511)
T 3e7w_A 146 FYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKV 225 (511)
T ss_dssp EEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHH
T ss_pred EEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHH
Confidence 999999999999999999999999988888888899999999999999999998888999999999998875 68999
Q ss_pred HHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccCcccccc
Q 036544 158 IYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETAGFVVSC 233 (439)
Q Consensus 158 ~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~~~~~~~ 233 (439)
+++.++++++|+++++|+++..+.... ....+.++|.++++|+++++++.+++. .+ ++++++.||+||++..++.+
T Consensus 226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 305 (511)
T 3e7w_A 226 LFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSV 305 (511)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEE
Confidence 999999999999999999999998776 445678999999999999999999998 45 89999999999998776654
Q ss_pred cccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccC-CC-
Q 036544 234 AWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRD-ND- 311 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~g- 311 (439)
..... ........++|.|.+++ +++|+|+ +|.+++.| +.|||+|+||+++.|||++|+.|...|.. +|
T Consensus 306 ~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~ 375 (511)
T 3e7w_A 306 EITND------VISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQ 375 (511)
T ss_dssp EECHH------HHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSS
T ss_pred ecccc------ccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCC
Confidence 32110 01111224589999998 9999997 79999998 89999999999999999999999998842 33
Q ss_pred -ceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCC
Q 036544 312 -WFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKP 390 (439)
Q Consensus 312 -~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 390 (439)
||+|||+|++ +||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|+..++.. .
T Consensus 376 ~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~--~ 452 (511)
T 3e7w_A 376 WAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF--E 452 (511)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC--S
T ss_pred EEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc--c
Confidence 7999999999 59999999999999999999999999999999999999999999998888999999999887654 2
Q ss_pred C----HHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 391 T----EEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 391 ~----~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
. .++++++++++|+.|++|+.++++++||+|++|||+|++|++.+.+
T Consensus 453 ~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 453 KEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp SHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 2 4689999999999999999999999999999999999999999875
No 16
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=6.8e-66 Score=522.24 Aligned_cols=420 Identities=21% Similarity=0.262 Sum_probs=345.4
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCc---------hhHHHHhccCCCCCCCCccEEEccCCCCC-----------C
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSS---------PLALAALSLFPSNTILPKPVLIHDDVSAT-----------S 60 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 60 (439)
||++.++++++.++|++++++++|+++... +.+.++....+. .....++.+....... +
T Consensus 161 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 239 (652)
T 1pg4_A 161 VIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV-TSVEHVIVLKRTGSDIDWQEGRDLWWRD 239 (652)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC-CSCCEEEEECSSCCCCCCCBTTEEEHHH
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCc-CCCCEEEEEeCCCCcccccCCCceeHHH
Confidence 789999999999999999999999987543 234444433210 0134455443211000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHH-HhhhhcCCCCCCEEEEcCCccchhhhHH-HH
Q 036544 61 SPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITV-SSLIDWRIPNQPVFLWTLPMFHENGWSY-SW 138 (439)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~ 138 (439)
+....... ......+++|+++|+|||||||.||||+++|+++...+. .....+++.++|++++.+|++|..|+.. ++
T Consensus 240 ~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~ 318 (652)
T 1pg4_A 240 LIEKASPE-HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318 (652)
T ss_dssp HHTTSCSC-CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTH
T ss_pred HHhhcCCC-CCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHH
Confidence 01111111 112235678999999999999999999999999876653 3445678899999999999999999854 78
Q ss_pred HHHhhcceEEEecc----CChHHHHHHHHhhCceeeechHHHHHHHhCCC----CCCCCCCCeEEEEeCCCCcHHHHHhh
Q 036544 139 GMAAVGGTNICLRK----VDVPIIYSVIKHHGVTHICGALVVLNMLSSSP----STKPLDRPVKILTSGASPPAAVLLRT 210 (439)
Q Consensus 139 ~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~l~~i~~~G~~~~~~~~~~~ 210 (439)
.+++.|+++++.+. +++..+++.|+++++|+++++|+++..|.+.. ...+++++|.++++|+++++++.+++
T Consensus 319 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~ 398 (652)
T 1pg4_A 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY 398 (652)
T ss_dssp HHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHH
Confidence 89999999999874 58999999999999999999999999998764 34567899999999999999999998
Q ss_pred h-hcC---CeeeccCCccccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEE
Q 036544 211 E-SLG---FVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIV 286 (439)
Q Consensus 211 ~-~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~ 286 (439)
. .++ +++++.||+||+++.++...... .....+++|.|++++ +++|+|+ +|.+++.| +.|||+
T Consensus 399 ~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~-~g~~v~~g--~~GEl~ 465 (652)
T 1pg4_A 399 WKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLV 465 (652)
T ss_dssp HHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEE
T ss_pred HHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECC-CCCCcCCC--ceEEEE
Confidence 7 566 89999999999987665432110 011235789999998 9999997 79999988 899999
Q ss_pred Eec--CcccccccCCccccccccc--CCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceE
Q 036544 287 FRS--GSIMLGYLKDQEGSSLCMR--DNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEV 362 (439)
Q Consensus 287 v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 362 (439)
|+| |+++.|||++++.+...+. .+|||+|||+|++++||+++|+||.||+||++|++|++.|||++|.+||+|.++
T Consensus 466 i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea 545 (652)
T 1pg4_A 466 ITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEA 545 (652)
T ss_dssp ECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEE
T ss_pred EccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceE
Confidence 999 7899999999988776653 378999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCCceeEEEEEeccCCCCCCC---HHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 363 ALVAQRDKFWGKRPCAFVSLKWELSKKPT---EEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 363 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
+|++.+++.+|+.++++|+++++.. .+ .++|+++++++|+.|++|+.++++++||+|++|||+|++|++++..
T Consensus 546 ~Vvg~~~~~~g~~l~a~Vv~~~~~~--~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 546 AVVGIPHAIKGQAIYAYVTLNHGEE--PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEEEEETTTEEEEEEEEEECTTCC--CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEEEEcCCCCeEEEEEEEECCCCC--CCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 9999999888999999999987654 33 5789999999999999999999999999999999999999998864
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.2e-66 Score=513.20 Aligned_cols=415 Identities=20% Similarity=0.201 Sum_probs=339.2
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.++++.++++++|++...... . .+..+...+.... ...........+.....++|+
T Consensus 80 pl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 146 (512)
T 3fce_A 80 PVDLSIPADRVQRIAENSGAKLLLSATAVTVT------D------LPVRIVSEDNLKD-IFFTHKGNTPNPEHAVKGDEN 146 (512)
T ss_dssp EEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------C------CSSEEEETHHHHH-HHHHTTTCCCCGGGSCCTTSE
T ss_pred eeCCCCcHHHHHHHHHhcCCCEEEecCccccc------c------cccceechhhhhh-hcccccccCCCccccCCCCCe
Confidence 78999999999999999999999998543210 0 1111111100000 000000011111223567899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc---CChHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK---VDVPI 157 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~---~~~~~ 157 (439)
++|+|||||||.||+|+++|+++...+......+++.++|++++.+|++|..++..++.++..|+++++.+. +++..
T Consensus 147 a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 226 (512)
T 3fce_A 147 FYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKD 226 (512)
T ss_dssp EEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHH
T ss_pred EEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHH
Confidence 999999999999999999999999988888888899999999999999999998888999999999999876 68999
Q ss_pred HHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccCcccccc
Q 036544 158 IYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETAGFVVSC 233 (439)
Q Consensus 158 ~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~~~~~~~ 233 (439)
+++.++++++|+++++|+++..+.... ....++++|.++++|+++++++.+++. .+ ++++++.||+||++..++..
T Consensus 227 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 306 (512)
T 3fce_A 227 LFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGI 306 (512)
T ss_dssp HHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeE
Confidence 999999999999999999999988765 445678999999999999999999998 45 89999999999998776654
Q ss_pred cccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCccccccccc---CC
Q 036544 234 AWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMR---DN 310 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~ 310 (439)
.... .........++|.|.+++ +++|+|+ +|.+++.| +.|||+|+||+++.|||++|+.|...|. ++
T Consensus 307 ~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~ 376 (512)
T 3fce_A 307 HVTE------EVLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376 (512)
T ss_dssp ECCH------HHHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTE
T ss_pred Eecc------ccccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCC
Confidence 3110 111112234689999998 9999997 89999998 8999999999999999999999998883 46
Q ss_pred CceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCC-
Q 036544 311 DWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKK- 389 (439)
Q Consensus 311 g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~- 389 (439)
|||+|||+|++ +||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|+..++....
T Consensus 377 ~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~ 455 (512)
T 3fce_A 377 RAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKE 455 (512)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSH
T ss_pred EEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccch
Confidence 79999999999 7999999999999999999999999999999999999999999999888889999999987664311
Q ss_pred -CCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHhhC
Q 036544 390 -PTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN 439 (439)
Q Consensus 390 -~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~~~ 439 (439)
...++++++++++|+.|++|+.++++++||+|++||++|++|++.+.+.|
T Consensus 456 ~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 456 FKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp HHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred hhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 11367999999999999999999999999999999999999999988643
No 18
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.8e-67 Score=514.98 Aligned_cols=400 Identities=25% Similarity=0.339 Sum_probs=320.8
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.+++++++++++|++...... ... ..+..+..... ..........+++|+
T Consensus 97 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~d~ 157 (505)
T 3nyq_A 97 PLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PAL------GALERVDVDVR--------ARGAVPEDGADDGDP 157 (505)
T ss_dssp EECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGG------TTSEEEECCTT--------CCCCCCCCCCCTTSE
T ss_pred EcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhh------ccccccccccc--------cccCCCCCCCCCCCe
Confidence 79999999999999999999999998752110 000 11111111100 000111123567899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEeccCChHHHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICLRKVDVPIIY 159 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~ 159 (439)
++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..|+.. ++.++..|+++++.+.+++..++
T Consensus 158 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~ 237 (505)
T 3nyq_A 158 ALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAA 237 (505)
T ss_dssp EEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHH
T ss_pred EEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHH
Confidence 99999999999999999999999999888888889999999999999999999865 78899999999999999999999
Q ss_pred HHHHhhCceeeechHHHHHHHhCCC-----CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccccCcccccc
Q 036544 160 SVIKHHGVTHICGALVVLNMLSSSP-----STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTETAGFVVSC 233 (439)
Q Consensus 160 ~~i~~~~~t~~~~~p~~~~~l~~~~-----~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE~~~~~~~~ 233 (439)
+.+ ++++|+++++|+++..|.... ....++++|.+++||+++++++.+++. .+++++++.||+||++..++..
T Consensus 238 ~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 238 REL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp HHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred HHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccC
Confidence 999 899999999999999987633 123356789999999999999999988 5699999999999998665443
Q ss_pred cccccccccchhHHHHhhhccCceeccccccccccCCCCccccC-CCCcceeEEEecCcccccccCCcccccccccCCCc
Q 036544 234 AWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKH-DGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDW 312 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~ 312 (439)
.... ....++|.|.+++ +++|+|+ +|.+++. .+++.|||+|+|++++.|||++|+.|...|..+||
T Consensus 317 ~~~~-----------~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 383 (505)
T 3nyq_A 317 ADGE-----------PRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGF 383 (505)
T ss_dssp TTSC-----------CCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSC
T ss_pred CCCC-----------CCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCC
Confidence 2111 1225789999998 9999998 7888876 22288999999999999999999999999988999
Q ss_pred eecCceEEEcCCCcEEEeccc-CceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCC
Q 036544 313 FYTGDIGVVHSDGYLEIKDRS-KDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPT 391 (439)
Q Consensus 313 ~~TGD~~~~~~dg~~~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 391 (439)
|+|||+|++++||+++++||. ||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|++.+... ..+
T Consensus 384 y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-~~~ 462 (505)
T 3nyq_A 384 FRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-PPA 462 (505)
T ss_dssp EEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-CCC
T ss_pred CccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-CCC
Confidence 999999999999999999997 599999999999999999999999999999999999999999999999875322 267
Q ss_pred HHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHH
Q 036544 392 EEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREI 434 (439)
Q Consensus 392 ~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~ 434 (439)
.++|+++++++|+.|++|+.++++++||+|++||++|++|++.
T Consensus 463 ~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 463 LGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp HHHHHHHHHHHTCGGGSCSEEEECSCCCC--------------
T ss_pred HHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhccC
Confidence 8999999999999999999999999999999999999999863
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.2e-65 Score=518.34 Aligned_cols=416 Identities=20% Similarity=0.305 Sum_probs=348.3
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCc-----hhHHHHhccCCCCCCCCccEEEccCCCCC--CCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSS-----PLALAALSLFPSNTILPKPVLIHDDVSAT--SSPTVGHPNFKWVQ 73 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (439)
|+++.++.+++.++++.++++++|++.... +.......... ....+....+..... +........ ....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 179 (617)
T 3rg2_A 104 LALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS---SIRVVQLLNDSGEHNLQDAINHPAED-FTAT 179 (617)
T ss_dssp EECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST---TCCEEEEETCCSTTBHHHHHHSCCSS-CCCC
T ss_pred cCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC---ccceeeecccccccchhhhhcccccc-cCCC
Confidence 789999999999999999999999998654 33333333222 133333333221100 000011111 1112
Q ss_pred CCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH--HHHHHhhcceEEEec
Q 036544 74 PESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY--SWGMAAVGGTNICLR 151 (439)
Q Consensus 74 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~--~~~~~~~g~~~~~~~ 151 (439)
+..++|+|+|+|||||||.||||+++|+++...+......+++.+++++++.+|++|.+++.. ++.++..|+++++.+
T Consensus 180 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 356789999999999999999999999999998888888889999999999999999988764 788999999999998
Q ss_pred cCChHHHHHHHHhhCceeeechHHHHHHHhCCC----CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCcccc
Q 036544 152 KVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP----STKPLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTET 226 (439)
Q Consensus 152 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE~ 226 (439)
..++..+++.++++++|++.++|+++..+.+.. ....+.++|.+++||+++++++.+++. .+++++++.||+||+
T Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~ 339 (617)
T 3rg2_A 260 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG 339 (617)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcc
Confidence 899999999999999999999999998886543 233678999999999999999999987 569999999999999
Q ss_pred CcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCccccccc
Q 036544 227 AGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLC 306 (439)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~ 306 (439)
+..++... .........+|.|+.+...++|+|+ ++.+++.| +.|||+|+|++++.|||++|+.|...
T Consensus 340 ~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~ 406 (617)
T 3rg2_A 340 LVNYTRLD----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASA 406 (617)
T ss_dssp EEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHH
T ss_pred eeecccCC----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEEEecCccccchhcCChhhhhhc
Confidence 75443322 1112233578999744448999997 89999999 89999999999999999999999999
Q ss_pred ccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCC
Q 036544 307 MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWEL 386 (439)
Q Consensus 307 ~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 386 (439)
|..++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++..+.
T Consensus 407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~- 485 (617)
T 3rg2_A 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP- 485 (617)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC-
T ss_pred cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCC-
Confidence 9889999999999999999999999999999999999999999999999999999999999998888999999998763
Q ss_pred CCCCCHHHHHHHHHh-cCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 387 SKKPTEEAIIEFCRA-RLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 387 ~~~~~~~~l~~~~~~-~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
.+.+++++++++ .|+.|++|..++++++||+|++||++|++|++.+.+
T Consensus 486 ---~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 486 ---LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp ---CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 678999999998 699999999999999999999999999999998754
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.2e-66 Score=513.30 Aligned_cols=400 Identities=20% Similarity=0.210 Sum_probs=331.9
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.+++++++++++|++....+.+..+ .. ...+..+... .+... .......+..++|+
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~~---~~~~~~~~~~----~~~~~--~~~~~~~~~~~~d~ 184 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QF---NGQVEIFEED----TIKIR--EGTNLHVPSKSTDL 184 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CC---CSEEEECCCS----TTTTS--CCSCCCCCCCTTSE
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----cc---cCceeeecch----hhccc--cCccCCCCCCCCCe
Confidence 799999999999999999999999997654433221 10 1122222221 11111 11111223567899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc---CChHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK---VDVPI 157 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~---~~~~~ 157 (439)
++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++..++.+++.|+++++.+. +++..
T Consensus 185 a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 264 (563)
T 1amu_A 185 AYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264 (563)
T ss_dssp EEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred EEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence 999999999999999999999998888777777889999999999999999998878889999999998865 68999
Q ss_pred HHHHHHhhCceeeechHHHHHHHhCCCCCCCCCCCeEEEEeCCCCcHHHHHhhhhcCCeeeccCCccccCcccccccccc
Q 036544 158 IYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKS 237 (439)
Q Consensus 158 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~l~~i~~~G~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 237 (439)
+++.++++++|+++++|+++..|.. ..+.++|.+++||+++++++.+++.+ .+++++.||+||++..++.+....
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~----~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~ 339 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDP----ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTWVATK 339 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCT----TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEEECCS
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHh----cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheeeeccc
Confidence 9999999999999999999887754 24678999999999999999999876 389999999999987665443211
Q ss_pred cccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccC------CC
Q 036544 238 QWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRD------ND 311 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~g 311 (439)
.. .....++|.|++++ +++|+|+ ++.+++.| +.|||+|+|++++.|||++|+.|...|.. ++
T Consensus 340 ~~--------~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~ 407 (563)
T 1amu_A 340 ET--------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEK 407 (563)
T ss_dssp SC--------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSE
T ss_pred cc--------CCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCE
Confidence 10 00124689999998 9999997 89999988 89999999999999999999999888853 35
Q ss_pred ceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCC
Q 036544 312 WFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPT 391 (439)
Q Consensus 312 ~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 391 (439)
||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|+.... .+
T Consensus 408 w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----~~ 483 (563)
T 1amu_A 408 LYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----IP 483 (563)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC----CC
T ss_pred EEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999987643 67
Q ss_pred HHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHH
Q 036544 392 EEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREI 434 (439)
Q Consensus 392 ~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~ 434 (439)
.++|+++++++|+.|++|+.++++++||+|++||++|++|++.
T Consensus 484 ~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 484 LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCc
Confidence 8999999999999999999999999999999999999999764
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=7.3e-66 Score=522.20 Aligned_cols=422 Identities=23% Similarity=0.326 Sum_probs=342.8
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCc---------hhHHHHhccCCCCCCCCccEEEccCCC-CCC----------
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSS---------PLALAALSLFPSNTILPKPVLIHDDVS-ATS---------- 60 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------- 60 (439)
||++.++.+++.++|++++|+++|+++... +.+.++....+ ..+.++++..... ...
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~~~~~~~~~~~~~~~~~~~~~ 244 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP---GVRHVLVYRKTNNPSVAFHAPRDLDWA 244 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT---TCCEEEEECSSCCSSCCCCSSSEEEHH
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC---CCceEEEEecCCCCccccCCCccccHH
Confidence 789999999999999999999999987643 23444443332 2344555443210 000
Q ss_pred -CCCCCCCCCCCCCCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHH-HhhhhcCCCCCCEEEEcCCccchhhhHH-H
Q 036544 61 -SPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITV-SSLIDWRIPNQPVFLWTLPMFHENGWSY-S 137 (439)
Q Consensus 61 -~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~-~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~ 137 (439)
+...... .....+.+++|+++|+|||||||.||||+++|+++...+. .....+++.++|++++.+|++|..|... +
T Consensus 245 ~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~ 323 (663)
T 1ry2_A 245 TEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVV 323 (663)
T ss_dssp HHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTT
T ss_pred HHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHH
Confidence 0000111 1112235678999999999999999999999999876654 3445678899999999999999999854 7
Q ss_pred HHHHhhcceEEEecc----CChHHHHHHHHhhCceeeechHHHHHHHhCCC----CCCCCCCCeEEEEeCCCCcHHHHHh
Q 036544 138 WGMAAVGGTNICLRK----VDVPIIYSVIKHHGVTHICGALVVLNMLSSSP----STKPLDRPVKILTSGASPPAAVLLR 209 (439)
Q Consensus 138 ~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~l~~i~~~G~~~~~~~~~~ 209 (439)
+.++..|+++++++. +++..+++.|+++++|+++++|++++.|.+.. ....++++|.++++|+++++++.++
T Consensus 324 ~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~ 403 (663)
T 1ry2_A 324 YGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEW 403 (663)
T ss_dssp HHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHH
Confidence 789999999999864 58899999999999999999999999998764 2346789999999999999999999
Q ss_pred hh-hcC---CeeeccCCccccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccC-CCCccee
Q 036544 210 TE-SLG---FVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKH-DGQSQGE 284 (439)
Q Consensus 210 ~~-~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~-~~~~~Ge 284 (439)
+. .+| +++++.||+||+++.++....... .....+++|.|++++ +++|+|+++|.+++. + +.||
T Consensus 404 ~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~v~i~d~~~g~~v~~~g--~~Ge 472 (663)
T 1ry2_A 404 YSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNTGEELNTSH--AEGV 472 (663)
T ss_dssp HHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSSTTCEECSS--CEEE
T ss_pred HHHHhCCCCceEEEeECCccccCeeeccCCCCC--------cccCCCccccCcCCC-eEEEEcCCCCCcCCCCC--cceE
Confidence 88 456 899999999999876654321000 011235789999999 999999878999987 6 7899
Q ss_pred EEEec--CcccccccCCccccccccc--CCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcc
Q 036544 285 IVFRS--GSIMLGYLKDQEGSSLCMR--DNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAIN 360 (439)
Q Consensus 285 l~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~ 360 (439)
|+|+| |+++.|||++++.+...|. .+|||+|||+|++++||+++|+||.||+||++|++|++.|||++|.+||+|.
T Consensus 473 l~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ 552 (663)
T 1ry2_A 473 LAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVA 552 (663)
T ss_dssp EEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEE
T ss_pred EEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcc
Confidence 99999 5899999999988877764 3789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccCCCCCceeEEEEEeccCCC---C-C----CCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHH
Q 036544 361 EVALVAQRDKFWGKRPCAFVSLKWELS---K-K----PTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLR 432 (439)
Q Consensus 361 ~~~v~~~~~~~~~~~~~~~v~~~~~~~---~-~----~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~ 432 (439)
+++|++.+++..|+.++++|+++++.. . . ...++|+++++++|+.|++|+.++++++||+|++|||+|++|+
T Consensus 553 ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 632 (663)
T 1ry2_A 553 ECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632 (663)
T ss_dssp EEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHH
T ss_pred eEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHH
Confidence 999999999888999999999976542 1 0 2257899999999999999999999999999999999999999
Q ss_pred HHHHh
Q 036544 433 EIVNA 437 (439)
Q Consensus 433 ~~~~~ 437 (439)
+++..
T Consensus 633 ~~~~~ 637 (663)
T 1ry2_A 633 KILAG 637 (663)
T ss_dssp HSCC-
T ss_pred HHHcC
Confidence 87653
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.8e-65 Score=508.70 Aligned_cols=413 Identities=23% Similarity=0.256 Sum_probs=330.2
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCC-CccEEEccCCC-------CCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTIL-PKPVLIHDDVS-------ATSSPTVGHPNFKWV 72 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 72 (439)
|||+.++.+++.++|++++++++|++....+.+.++..... .. ..++.++.... ..++....... ...
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE---HDGCQLIVSQPRESEPRLAPLFEELIDAAAPA-AKA 177 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC------CCEEEEECC------CCCBHHHHHHTSCCC-SSC
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc---ccCceEEEecccccccccccchhhhhccCCCc-ccc
Confidence 78999999999999999999999999887766665543322 12 23333332110 00000101111 111
Q ss_pred CCCCCCCCeEEEeccCCCCCCceEEEchHHH-HHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEe
Q 036544 73 QPESEWDPMALNYTSGTTSSPKGVVHCHRGL-FIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICL 150 (439)
Q Consensus 73 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~ 150 (439)
...+++|+++|+|||||||.||+|+++|+++ ..........+++.++|++++.+|++|..|+.. ++.++..|+++++.
T Consensus 178 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 178 AATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred cCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 2356789999999999999999999999999 555555555678899999999999999999875 56788899999887
Q ss_pred -ccCChHHHHHHHHhhCceeeechHHHHHHHhCCCCCCC--CCCCeEEEEeCCCCcHHHHHhhhh-cCCeeeccCCcccc
Q 036544 151 -RKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKP--LDRPVKILTSGASPPAAVLLRTES-LGFVVSHSYGLTET 226 (439)
Q Consensus 151 -~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~~l~~i~~~G~~~~~~~~~~~~~-~~~~v~~~yG~tE~ 226 (439)
..+++..+++.++++++|+++++|+++..+........ ..++|.+++||+++++++.+++.+ +++++++.||+||+
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~ 337 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEM 337 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTT
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhc
Confidence 56899999999999999999999999999987652221 348999999999999999999984 69999999999999
Q ss_pred CcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCccccccc
Q 036544 227 AGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLC 306 (439)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~ 306 (439)
+.+++...... ...+++|.|.+++ +++|+|+ +|.+++.| +.|||+|+|++++.|||++++.|...
T Consensus 338 ~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~ 402 (529)
T 2v7b_A 338 LHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRAT 402 (529)
T ss_dssp SSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHH
T ss_pred CceeeccccCC-----------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcccccCCChHHHHHh
Confidence 76654432111 1235789999998 9999996 89999998 89999999999999999999999999
Q ss_pred ccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCC
Q 036544 307 MRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWEL 386 (439)
Q Consensus 307 ~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 386 (439)
|. ++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++. ++.+++.++++|++.++.
T Consensus 403 f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~ 480 (529)
T 2v7b_A 403 FL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREF 480 (529)
T ss_dssp EE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTC
T ss_pred hh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCC
Confidence 98 8999999999999999999999999999999999999999999999999999999999 666678899999987664
Q ss_pred CCC-CCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHH
Q 036544 387 SKK-PTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREI 434 (439)
Q Consensus 387 ~~~-~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~ 434 (439)
... ...++|+++++++|+.|++|+.++++++||+|++||++|++|+++
T Consensus 481 ~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 481 APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp CCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred CcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 211 134689999999999999999999999999999999999999863
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.6e-66 Score=518.55 Aligned_cols=403 Identities=21% Similarity=0.267 Sum_probs=241.3
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.+++++++++++|++......+.. ... +...+.. ....+.........++|+
T Consensus 154 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~----------~~~-~~~~~~~------~~~~~~~~~~~~~~~~d~ 216 (570)
T 4gr5_A 154 MLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG----------TTT-LYVEDEA------ASDAPAGNLATGVGPEDV 216 (570)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS----------SEE-EECCC-------------CCCCCCCCCTTSE
T ss_pred EcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC----------Ccc-eeeeccc------cccccccccCCCCCCCCe
Confidence 79999999999999999999999999765432110 111 1111110 001111111223678899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec--cCChHHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR--KVDVPII 158 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~ 158 (439)
++|+|||||||.||||+++|+++...+.. ...+++.++|++++++|++|..+...++.+++.|+++++.+ .+++..+
T Consensus 217 a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 295 (570)
T 4gr5_A 217 ACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEI 295 (570)
T ss_dssp EEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHH
T ss_pred EEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHH
Confidence 99999999999999999999998766544 34567889999999999999877777888999999999886 4689999
Q ss_pred HHHHHhhCceeeechHHHHHHHhCCCCCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccCccccccccc
Q 036544 159 YSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETAGFVVSCAWK 236 (439)
Q Consensus 159 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~~~~~~~~~~ 236 (439)
++.|+++++|+++++|+++..|.+.. ...++++|.+++||+++++...+++. .+ ++++++.||+||++++++.+...
T Consensus 296 ~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~ 374 (570)
T 4gr5_A 296 GELVARHGVTMLQLSASLFNFLVDEV-PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVV 374 (570)
T ss_dssp HHHHHHHTCCEEEEEHHHHHHHHHHC-GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECC
T ss_pred HHHHHHcCCcEEEecHHHHHHHHhhc-hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeec
Confidence 99999999999999999999998654 34578899999999999999888887 44 79999999999998776544321
Q ss_pred ccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccCC------
Q 036544 237 SQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDN------ 310 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------ 310 (439)
.. .......++|.|+++. +++|+|+ ++.+++.| +.|||+|+|++++.|||++|+.|...|..+
T Consensus 375 ~~-------~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 443 (570)
T 4gr5_A 375 AG-------DLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPG 443 (570)
T ss_dssp GG-------GTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSS
T ss_pred cc-------ccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCC
Confidence 10 1111123589999998 9999997 79999998 899999999999999999999999888543
Q ss_pred --CceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCC
Q 036544 311 --DWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSK 388 (439)
Q Consensus 311 --g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 388 (439)
|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|+......
T Consensus 444 ~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~- 522 (570)
T 4gr5_A 444 GERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA- 522 (570)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEC--------------------------------------------------------
T ss_pred CCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC-
Confidence 79999999999999999999999999999999999999999999999999999999999888899999998865421
Q ss_pred CCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHH
Q 036544 389 KPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREI 434 (439)
Q Consensus 389 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~ 434 (439)
..+.++|+++++++|+.|++|+.++++++||+|++|||+|++|++.
T Consensus 523 ~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 523 PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------
T ss_pred CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 1577899999999999999999999999999999999999999875
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.3e-65 Score=507.12 Aligned_cols=412 Identities=20% Similarity=0.218 Sum_probs=328.2
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.++++.++++++|++++....+. ...++.+..... ..... ..........++|+
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~d~ 147 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-----------GISLVSLSEIES--AKLAE--MPYERTHSVKGDDN 147 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-----------TSEEEEHHHHHH--HHHHT--CCCCCSSCCCTTSE
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCccccccc-----------cCcccchhhhhh--ccccc--CCcccCCCCCCCCc
Confidence 7899999999999999999999999876442111 001111111000 00000 01111223577899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhh--cCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEeccC---Ch
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLID--WRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKV---DV 155 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~---~~ 155 (439)
++|+|||||||.||+|+++|+++...+...... +++.+++++++..|++|..++..++.++..|+++++.+.. ++
T Consensus 148 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~ 227 (521)
T 3l8c_A 148 YYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADF 227 (521)
T ss_dssp EEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCH
T ss_pred EEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCH
Confidence 999999999999999999999998777666544 6778899999999999999988888899999999988763 88
Q ss_pred HHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccCcccc
Q 036544 156 PIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETAGFVV 231 (439)
Q Consensus 156 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~~~~~ 231 (439)
..+++.+.++++|++.++|+++..+.... ....++++|.++++|++++++..+++. .+ ++++++.||+||++..++
T Consensus 228 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 307 (521)
T 3l8c_A 228 KQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALS 307 (521)
T ss_dssp HHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred HHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhc
Confidence 99999999999999999999999887765 345678999999999999999999987 45 899999999999987766
Q ss_pred cccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccc---c
Q 036544 232 SCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCM---R 308 (439)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~ 308 (439)
.+.... .........++|.|.+++ +++|+|+ +|.+++.| +.|||+|+||+++.|||++|+.|...| +
T Consensus 308 ~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~ 377 (521)
T 3l8c_A 308 AIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFK 377 (521)
T ss_dssp EEEECH------HHHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEET
T ss_pred eeeccc------ccccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCC
Confidence 543211 011111234689999998 9999997 89999998 899999999999999999999999888 4
Q ss_pred CCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCC-CCceeEEEEEeccCCC
Q 036544 309 DNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKF-WGKRPCAFVSLKWELS 387 (439)
Q Consensus 309 ~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~ 387 (439)
++|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.++++++.+++. +++.++++|+++++..
T Consensus 378 ~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~ 457 (521)
T 3l8c_A 378 GQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVK 457 (521)
T ss_dssp TEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSG
T ss_pred CceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccc
Confidence 568999999999999999999999999999999999999999999999999999999987654 4578999999987643
Q ss_pred CCC-----CHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 388 KKP-----TEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 388 ~~~-----~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
... ..++|+++++++|+.|++|+.++++++||+|++|||+|++|++.+.+
T Consensus 458 ~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~ 512 (521)
T 3l8c_A 458 ERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNN 512 (521)
T ss_dssp GGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-
T ss_pred cccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhc
Confidence 111 15789999999999999999999999999999999999999998764
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=9e-66 Score=544.79 Aligned_cols=421 Identities=24% Similarity=0.305 Sum_probs=260.7
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCC---------CCCCCCCCCC--CC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVS---------ATSSPTVGHP--NF 69 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~ 69 (439)
|||+.++++++.+++++++++++|++....+.+..+..... ..++.+++... ..++...... ..
T Consensus 142 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (979)
T 3tsy_A 142 AANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDG-----VVIVCIDDNESVPIPEGCLRFTELTQSTTEASEV 216 (979)
T ss_dssp EECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSC-----CEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGGG
T ss_pred eeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCC-----ceEEEeCCcccccCCcccccHHHHhhcccccccc
Confidence 78999999999999999999999999988777766544322 12333322110 0011111111 01
Q ss_pred CCCCCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh----hcCCCCCCEEEEcCCccchhhhHH-HHHHHhhc
Q 036544 70 KWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI----DWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVG 144 (439)
Q Consensus 70 ~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g 144 (439)
......+++|+++|+|||||||.||||+++|+++...+..... .+.+.++|++++.+|++|.+++.. ++.++..|
T Consensus 217 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 296 (979)
T 3tsy_A 217 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVG 296 (979)
T ss_dssp SCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred CCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence 1122467899999999999999999999999999877665543 346788999999999999999865 67889999
Q ss_pred ceEEEeccCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeecc
Q 036544 145 GTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHS 220 (439)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~ 220 (439)
+++++.+.+++..+++.++++++|+++++|+++..|.... ....++++|.+++||+++++++.+++. .+ ++++++.
T Consensus 297 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~ 376 (979)
T 3tsy_A 297 AAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQG 376 (979)
T ss_dssp CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEEC
T ss_pred cEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEee
Confidence 9999999999999999999999999999999999998776 445688999999999999999999997 45 8999999
Q ss_pred CCccccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCc
Q 036544 221 YGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQ 300 (439)
Q Consensus 221 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~ 300 (439)
||+||++.+++.+...... ......+++|.|+++. +++|+|++++.+++.| +.|||+|+|+.++.|||++|
T Consensus 377 YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p 447 (979)
T 3tsy_A 377 YGMTEAGPVLAMSLGFAKE------PFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNP 447 (979)
T ss_dssp EECGGGCSEEEECGGGSSS------CCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCH
T ss_pred echhhhhHHHHhCCCCCCC------ccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCccccccCCh
Confidence 9999998766544211000 0011235789999998 9999998889999998 88999999999999999999
Q ss_pred ccccccccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEE
Q 036544 301 EGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFV 380 (439)
Q Consensus 301 ~~~~~~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 380 (439)
+.|...|..+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++.+++.++++|
T Consensus 448 ~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v 527 (979)
T 3tsy_A 448 AATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFV 527 (979)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------------
T ss_pred hhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEE
Confidence 99999998899999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeccCCCCCCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 381 SLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
+..++.. .+.++++++++++|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 528 v~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 528 VKSKDSE--LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp ---------------------------------------------------------
T ss_pred EECCCCC--CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 9877655 678899999999999999999999999999999999999999998764
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=8.5e-64 Score=502.87 Aligned_cols=395 Identities=19% Similarity=0.219 Sum_probs=316.1
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
|||++++.+++.+++++++++++|++........ .... ..+... .. . ..........++|+
T Consensus 106 pld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~----------~~~~-~~~~~~------~~-~-~~~~~~~~~~~~d~ 166 (620)
T 4dg8_A 106 YIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN----------GLPC-VPVRHL------PA-A-PASVARPCFAADQI 166 (620)
T ss_dssp ECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT----------TSCE-EEGGGC------CC-C-CCCSSCCCCCTTSE
T ss_pred eeCccChHHHHHHHHHhCCCcEEEecCccccccc----------CCce-eeeccC------Cc-C-CccccCCCCCCCCe
Confidence 7999999999999999999999997664332110 0111 111110 00 0 00111122567899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec--cCChHHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR--KVDVPII 158 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~ 158 (439)
++|+|||||||.||||+++|+++...+.. ...+++.+++++++.+|++|..++..++.++..|+++++.+ .+++..+
T Consensus 167 a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 245 (620)
T 4dg8_A 167 AYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVL 245 (620)
T ss_dssp EEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHH
T ss_pred EEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHH
Confidence 99999999999999999999999776655 45567899999999999999999988999999999999864 5799999
Q ss_pred HHHHHhhCceeeechHHHHHHHhCCCCCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccCccccccccc
Q 036544 159 YSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETAGFVVSCAWK 236 (439)
Q Consensus 159 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~~~~~~~~~~ 236 (439)
++.|+++++|+++++|+++..|.... ...+.++|.+++||+++++...+++. .+ ++++++.||+||++..++.....
T Consensus 246 ~~~i~~~~vt~~~~~Ps~~~~l~~~~-~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~ 324 (620)
T 4dg8_A 246 RQLIGERGADSAWLTASLFNTLVDLD-PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVT 324 (620)
T ss_dssp HHHHHTTCCCEEEEEHHHHHHHHHHC-GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECC
T ss_pred HHHHHHhCCcEEEccHHHHHHHHhcC-hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecc
Confidence 99999999999999999999997643 34577899999999999988888776 33 89999999999998766543311
Q ss_pred ccccccchhHHHHhhhccCceeccccccccccCCCCcc-ccCCCCcceeEEEecCcccccccCCcccccccccCC-----
Q 036544 237 SQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMS-VKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDN----- 310 (439)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~----- 310 (439)
. ........++|+|++++ +++|+|+ ++.+ ++.| +.|||+|+|++++.|||++|+.|...|..+
T Consensus 325 ~-------~~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~ 393 (620)
T 4dg8_A 325 D-------DDLEEDDIPIGKAIAGT-AVLLLDE-HGQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGR 393 (620)
T ss_dssp T-------GGGGSSSCCCBEECTTE-EEEEECT-TSCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTE
T ss_pred c-------cccCCCCCCceecccCc-EEEEECc-cCCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCC
Confidence 1 11112234789999998 9999998 5665 6777 889999999999999999999999999743
Q ss_pred --CceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCC
Q 036544 311 --DWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSK 388 (439)
Q Consensus 311 --g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 388 (439)
+||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+++ ++...
T Consensus 394 ~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~-~~~~~---- 468 (620)
T 4dg8_A 394 LLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCA-WTGKA---- 468 (620)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEE-EEECT----
T ss_pred CceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEE-EecCh----
Confidence 79999999999999999999999999999999999999999999999999999999887754444444 43321
Q ss_pred CCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHH
Q 036544 389 KPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVN 436 (439)
Q Consensus 389 ~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~ 436 (439)
++++++++++||.|++|+.++++++||+|++||++|++|++.+.
T Consensus 469 ----~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~ 512 (620)
T 4dg8_A 469 ----DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLE 512 (620)
T ss_dssp ----TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTC
T ss_pred ----HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccc
Confidence 22345667789999999999999999999999999999988764
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.7e-63 Score=494.30 Aligned_cols=411 Identities=18% Similarity=0.160 Sum_probs=236.5
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDV-SATSSPTVGHPNFKWVQPESEWD 79 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (439)
|||++++.+++.+++++++++++|+++.....+. .. .....+.... .......... .........+++
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 176 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LP-----PETKVLDTKNQSFIENLSTQD-TSDILNNYPENL 176 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CC-----TTCEEEETTCHHHHHHHHHSC-CSCCCCCCCTTS
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cC-----ccceeecccchhhhhhccccc-ccccccCCCCCC
Confidence 7999999999999999999999999876543210 00 1111111110 0000000000 011112345678
Q ss_pred CeEEEeccCCCCCCceEEEchHHHHHHHHHhhh--------hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec
Q 036544 80 PMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI--------DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR 151 (439)
Q Consensus 80 ~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~--------~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 151 (439)
+++|+|||||||.||||+++|+++...+..... .+.+...+++++..|++|..++..++.++..|+++++.+
T Consensus 177 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 256 (562)
T 3ite_A 177 DAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGE 256 (562)
T ss_dssp EEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred cEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecc
Confidence 999999999999999999999999876655433 245778899999999999988888888999999998876
Q ss_pred cCC-hHHHHHHHHhhCceeeechHHHHHHHhCCCCCCCCCCCeEEEEeCCCCcHHHHHhhhh-cCCeeeccCCccccCcc
Q 036544 152 KVD-VPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTES-LGFVVSHSYGLTETAGF 229 (439)
Q Consensus 152 ~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~l~~i~~~G~~~~~~~~~~~~~-~~~~v~~~yG~tE~~~~ 229 (439)
.+. +..+++.++++++|+++++|++++.+... ...++++|.+++||+++++++.+++.+ +++++++.||+||++..
T Consensus 257 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 334 (562)
T 3ite_A 257 RLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIG 334 (562)
T ss_dssp HHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSC
T ss_pred hhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheee
Confidence 543 46788999999999999999999988553 345778999999999999999999984 58999999999999876
Q ss_pred cccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccC
Q 036544 230 VVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRD 309 (439)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 309 (439)
++....... ....++|.|+++. .++|+|++++.+++.| +.|||+|+|++++.|||++|+.+...+.
T Consensus 335 ~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~- 400 (562)
T 3ite_A 335 CSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDI- 400 (562)
T ss_dssp SEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEE-
T ss_pred eeeeeecCC----------CCCccccccCCCC-eEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccC-
Confidence 655432111 1124689999998 9999998889999998 8999999999999999999999887765
Q ss_pred CC--ceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcC-cCcceEEEEcccCCCCCceeEEEEEeccCC
Q 036544 310 ND--WFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMN-PAINEVALVAQRDKFWGKRPCAFVSLKWEL 386 (439)
Q Consensus 310 ~g--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 386 (439)
+| ||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+| +.+.++++++.+++..++..+++++...+.
T Consensus 401 ~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~ 480 (562)
T 3ite_A 401 NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGA 480 (562)
T ss_dssp TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------------------------
T ss_pred CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccc
Confidence 56 999999999999999999999999999999999999999999998 788899999988888777666655554332
Q ss_pred CC-----------CCCHHHHHHHHHhcCCCccccceEEeecccCCC-CCCcccHHHHHHHHHhh
Q 036544 387 SK-----------KPTEEAIIEFCRARLPHYMAHKSVIIEDELPKT-ATGKIQKFVLREIVNAV 438 (439)
Q Consensus 387 ~~-----------~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t-~~GKi~r~~l~~~~~~~ 438 (439)
.. ....++|+++++++|+.|++|+.++++++||+| ++||++|++|++++.++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 481 AVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence 20 012458999999999999999999999999998 89999999999998865
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.1e-61 Score=522.25 Aligned_cols=403 Identities=19% Similarity=0.232 Sum_probs=334.7
Q ss_pred CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDP 80 (439)
Q Consensus 1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
||++.++.+++.++|++++++++|++....+.+.. .+ .....+.+.+... . .. ....+....+++++
T Consensus 543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~---~~~~~~~~~~~~~---~-~~--~~~~~~~~~~~~~~ 609 (1304)
T 2vsq_A 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP---YTGTTLFIDDQTR---F-EE--QASDPATAIDPNDP 609 (1304)
T ss_dssp ECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC---CCSEEEESSCGGG---G-GS--CSSCCCCCCCTTSE
T ss_pred EECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC---CCCcEEEeccccc---c-cc--ccCCCCCCCCCCCe
Confidence 79999999999999999999999999865543221 11 0111222222110 0 00 11111223578899
Q ss_pred eEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc---CChHH
Q 036544 81 MALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK---VDVPI 157 (439)
Q Consensus 81 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~---~~~~~ 157 (439)
|||+|||||||.||||+++|+++... ......+++.++|+++...|++|..+...++.++..|+++++.+. +++..
T Consensus 610 ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~ 688 (1304)
T 2vsq_A 610 AYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688 (1304)
T ss_dssp EEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred EEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence 99999999999999999999999765 455566788899999999999999888888999999999999864 68999
Q ss_pred HHHHHHhhCceeeechHHHHHHHhCCCCCCCCCCCeEEEEeCCCCcHHHHHhhhh-c-CCeeeccCCccccCcccccccc
Q 036544 158 IYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTES-L-GFVVSHSYGLTETAGFVVSCAW 235 (439)
Q Consensus 158 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~l~~i~~~G~~~~~~~~~~~~~-~-~~~v~~~yG~tE~~~~~~~~~~ 235 (439)
+++.|.++++|+++++|++++.|.... ...+.++|.+++||+++++...+++.+ + ++++++.||+||++..++....
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~-~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 767 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAG-EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVV 767 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHC-SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEEC
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhc-hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeec
Confidence 999999999999999999999997542 223568999999999999999988874 3 5789999999999877665432
Q ss_pred cccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccC------
Q 036544 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRD------ 309 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------ 309 (439)
..... .....++|+|++++ .++|+|+ ++.+++.| +.|||+|+|++++.||+|+|+.|.+.|..
T Consensus 768 ~~~~~-------~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g 836 (1304)
T 2vsq_A 768 HDLPD-------SISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPG 836 (1304)
T ss_dssp CCCCS-------SCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTT
T ss_pred cCccc-------cCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCC
Confidence 11000 01124689999998 9999997 79999998 89999999999999999999999988853
Q ss_pred CCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCC
Q 036544 310 NDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKK 389 (439)
Q Consensus 310 ~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 389 (439)
++||||||+|++++||.++++||.||+||++|++|+|.|||++|.+||+|.+++|++.++...++.++++++....
T Consensus 837 ~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~---- 912 (1304)
T 2vsq_A 837 ETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ---- 912 (1304)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS----
T ss_pred CeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC----
Confidence 4599999999999999999999999999999999999999999999999999999999988888899999998653
Q ss_pred CCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHH
Q 036544 390 PTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLRE 433 (439)
Q Consensus 390 ~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~ 433 (439)
.+.++++++++++||.|++|..++++++||+|+|||++|++|.+
T Consensus 913 ~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~ 956 (1304)
T 2vsq_A 913 LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPK 956 (1304)
T ss_dssp SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCC
T ss_pred CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCC
Confidence 67899999999999999999999999999999999999998854
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.1e-62 Score=493.47 Aligned_cols=422 Identities=17% Similarity=0.169 Sum_probs=330.3
Q ss_pred CcccCC---ChHHHHHHHhhCCceEEEEeCCCchhHHHHh-ccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRL---DHKRVSVLLHHSESKLLFVDYQSSPLALAAL-SLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPES 76 (439)
Q Consensus 1 Pl~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (439)
||++.+ +.+++.++++.++++++|++.+..+.+.... .... ....+..+... .+.... .........+
T Consensus 94 pl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~-~~~~~~~~~~ 165 (590)
T 3kxw_A 94 PIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP---KFLKIPAIALE----SIELNR-SSSWQPTSIK 165 (590)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC---EETTEEEEEGG----GCCGGG-GGGCCCCCCC
T ss_pred EecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc---cccccceeech----hccccc-cccCCCCCCC
Confidence 678877 4578999999999999999876544333221 1111 01112222111 110000 0111112367
Q ss_pred CCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEeccC--
Q 036544 77 EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICLRKV-- 153 (439)
Q Consensus 77 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~-- 153 (439)
++|+++|+|||||||.||||+++|+++...+......+++.++|++++++|++|..|+.. ++.+++.|+++++.+++
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 245 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSF 245 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHH
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHH
Confidence 789999999999999999999999999999988888889999999999999999999876 78888999999988765
Q ss_pred --ChHHHHHHHHhhCceeeechHHHHHHHhCCC-----CCCCCCCCeEEEEeCCCCcHHHHHhhhh-c------CCeeec
Q 036544 154 --DVPIIYSVIKHHGVTHICGALVVLNMLSSSP-----STKPLDRPVKILTSGASPPAAVLLRTES-L------GFVVSH 219 (439)
Q Consensus 154 --~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-----~~~~~~~l~~i~~~G~~~~~~~~~~~~~-~------~~~v~~ 219 (439)
++..+++.|+++++|++.++|.++..+.+.. ....++++|.+++||+++++++.+++.+ + +.++++
T Consensus 246 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~ 325 (590)
T 3kxw_A 246 LQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYP 325 (590)
T ss_dssp HHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEE
T ss_pred HHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccc
Confidence 8899999999999999999999998886542 4557889999999999999999998873 3 347999
Q ss_pred cCCccccCccccccccccccccc---------------c-hhHHHHhhhccCceeccccccccccCCCCccccCCCCcce
Q 036544 220 SYGLTETAGFVVSCAWKSQWNTL---------------A-DTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQG 283 (439)
Q Consensus 220 ~yG~tE~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~G 283 (439)
.||+||++.+++.......+... . .........++|.|.++ ++|+|++++.+++.| +.|
T Consensus 326 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~---v~i~d~~~~~~~~~g--~~G 400 (590)
T 3kxw_A 326 CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE---VKIIDPDTLIPCDFD--QVG 400 (590)
T ss_dssp EEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE---EEEECTTTCCBCCTT--BCE
T ss_pred ccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC---eEEEcCCCCcCCCCC--CEE
Confidence 99999998877654322111000 0 00011123567888876 788998779999998 899
Q ss_pred eEEEecCcccccccCCcccccccccC------CC--ceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHH-h
Q 036544 284 EIVFRSGSIMLGYLKDQEGSSLCMRD------ND--WFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVL-Y 354 (439)
Q Consensus 284 el~v~~~~~~~gy~~~~~~~~~~~~~------~g--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l-~ 354 (439)
||+|+||+++.|||++|+.|...|.. +| ||+|||+|+++ ||+++++||.||+||++|++|+|.+||++| .
T Consensus 401 El~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~ 479 (590)
T 3kxw_A 401 EIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMH 479 (590)
T ss_dssp EEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHH
T ss_pred EEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHh
Confidence 99999999999999999999998863 24 99999999999 999999999999999999999999999999 8
Q ss_pred cCcCcc--eEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHHHHHHHhcCCC-ccccc-eEEee--cccCCCCCCcccH
Q 036544 355 MNPAIN--EVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPH-YMAHK-SVIIE--DELPKTATGKIQK 428 (439)
Q Consensus 355 ~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~-~~~p~-~~~~v--~~lP~t~~GKi~r 428 (439)
.||.|. +++|++++++. ++.++++++..++.....+.+++++++++.|+. +++|. .++++ ++||+|++|||+|
T Consensus 480 ~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R 558 (590)
T 3kxw_A 480 SPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRR 558 (590)
T ss_dssp SGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHH
T ss_pred cCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHH
Confidence 899998 89999988776 678888888876642224568899999998885 77775 55555 7999999999999
Q ss_pred HHHHHHHHh
Q 036544 429 FVLREIVNA 437 (439)
Q Consensus 429 ~~l~~~~~~ 437 (439)
++|++++.+
T Consensus 559 ~~L~~~~~~ 567 (590)
T 3kxw_A 559 NFCRKHLLD 567 (590)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999874
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=6.5e-61 Score=481.56 Aligned_cols=416 Identities=19% Similarity=0.185 Sum_probs=330.5
Q ss_pred CcccCCC-------hHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQRLD-------HKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQ 73 (439)
Q Consensus 1 Pl~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (439)
||++.++ .+++.++++.++++++|++.+..+.+........ .+..+...... .. .. .+ ....
T Consensus 103 pl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~-~~--~~-~~~~ 171 (576)
T 3gqw_A 103 PLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNP------ELHVLSHAWFK-AL-PE--AD-VALQ 171 (576)
T ss_dssp EECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCT------TCEEEEHHHHH-TS-CC--CC-CCCC
T ss_pred ecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCC------cceecchhhhh-cc-cc--cc-cccC
Confidence 6788888 7999999999999999999988877776655443 12222111000 00 00 01 1112
Q ss_pred CCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhh-cCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEec
Q 036544 74 PESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLID-WRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICLR 151 (439)
Q Consensus 74 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~ 151 (439)
...++|+++|+|||||||.||||+++|+++...+...... +++.++|++++++|++|.+|+.. ++.++..|+++++..
T Consensus 172 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 172 RPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 3567899999999999999999999999998887776544 78899999999999999999876 556677788877775
Q ss_pred c----CChHHHHHHHHhhCceeeechHHHHHHHhCCC-----CCCCCCCCeEEEEeCCCCcHHHHHhhhh-c------CC
Q 036544 152 K----VDVPIIYSVIKHHGVTHICGALVVLNMLSSSP-----STKPLDRPVKILTSGASPPAAVLLRTES-L------GF 215 (439)
Q Consensus 152 ~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-----~~~~~~~l~~i~~~G~~~~~~~~~~~~~-~------~~ 215 (439)
. +++..+++.++++++|+++++|+++..+.... ....++++|.+++||+++++++.+++.+ + ++
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 331 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNK 331 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGG
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcc
Confidence 3 58899999999999999999999998876554 4556889999999999999999999873 3 67
Q ss_pred eeeccCCccccCcccccccccccccccchhHH-----------------HHhhhccCceeccccccccccCCCCccccCC
Q 036544 216 VVSHSYGLTETAGFVVSCAWKSQWNTLADTER-----------------ARLKARQGVRTIGLADMDVVHPETGMSVKHD 278 (439)
Q Consensus 216 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~ 278 (439)
.+++.||+||++..++.+.............. .....++|.|+++. +++|+|+ +|.+++.|
T Consensus 332 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g 409 (576)
T 3gqw_A 332 TFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEH-GIEIRNE-AGMPVAER 409 (576)
T ss_dssp GEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTC-EEEEECT-TSCBCCTT
T ss_pred cccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCC-eEEEECC-CCCCCCCC
Confidence 89999999999887766543221110000000 00112689999998 9999996 89999998
Q ss_pred CCcceeEEEecCcccccccCCcccccccccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcC
Q 036544 279 GQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPA 358 (439)
Q Consensus 279 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 358 (439)
+.|||+|+|+.++.|||++++.+...+. +|||+|||+|++ +||+++++||.||+||++|++|+|.+||++|.+||+
T Consensus 410 --~~GEl~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 410 --VVGHICISGPSLMSGYFGDQVSQDEIAA-TGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp --BCEEEEEESTTSCCCBTTCHHHHHHHHH-HSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSS
T ss_pred --CeEEEEEeCccccccccCCccccccccC-CCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcc
Confidence 8999999999999999999988777665 899999999999 799999999999999999999999999999999999
Q ss_pred cceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHHHHHHHhcC-CCccccceEEeec--ccCCCCCCcccHHHHHHHH
Q 036544 359 INEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARL-PHYMAHKSVIIED--ELPKTATGKIQKFVLREIV 435 (439)
Q Consensus 359 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~l-~~~~~p~~~~~v~--~lP~t~~GKi~r~~l~~~~ 435 (439)
|.++++++..++. +...+++....... ...+++++++++++ +.+++|..+.+++ +||+|++||++|++|++++
T Consensus 486 V~~~~vv~~~~~~--~~~~~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~ 561 (576)
T 3gqw_A 486 IHSGDAIAFVTAQ--EKIILQIQCRISDE--ERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRY 561 (576)
T ss_dssp CCTTSEEEEECTT--SCEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHH
T ss_pred cccccEEEEEcCC--ccEEEEEEEecCch--hHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHH
Confidence 9988888777653 34455555443322 45578999999888 7899999888887 8999999999999999998
Q ss_pred Hh
Q 036544 436 NA 437 (439)
Q Consensus 436 ~~ 437 (439)
.+
T Consensus 562 ~~ 563 (576)
T 3gqw_A 562 QK 563 (576)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.4e-58 Score=434.81 Aligned_cols=314 Identities=18% Similarity=0.169 Sum_probs=264.1
Q ss_pred CCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEeccCChH
Q 036544 77 EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVP 156 (439)
Q Consensus 77 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 156 (439)
.+|+|+|+|||||||.||||++||+++...+......+++.++|++++++|++|.+|+..++.++..|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 47899999999999999999999999999998888889999999999999999999998888999999999888642 2
Q ss_pred HHHHHHHhhCceeeechHHHHHHHhCCC-CCCCCCCCeEEEEeCCCCcHHHHHhhhhcCCeeeccCCccccCcccccccc
Q 036544 157 IIYSVIKHHGVTHICGALVVLNMLSSSP-STKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAW 235 (439)
Q Consensus 157 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~~~~l~~i~~~G~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~ 235 (439)
..++.++++++|+++++|+++..|+... ....++++|.+++||+++++++.++++++++++++.||+||+++.++....
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~ 193 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKAL 193 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEEC
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccc
Confidence 2356788999999999999999998766 445678999999999999999999999889999999999999876654321
Q ss_pred cccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccccCCCceec
Q 036544 236 KSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYT 315 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~T 315 (439)
.. ...+.+|.+.++. .+. .+ +.|||+++|+. ..+|||+|
T Consensus 194 ~~-----------~~~g~~~~~~pgv-~~~-----------~~--~~Gel~~~g~~----------------~~~g~~~T 232 (358)
T 4gs5_A 194 NG-----------PEASELYVFLPGI-QYG-----------VD--ERGCLHISGAV----------------TNGQTVQT 232 (358)
T ss_dssp SS-----------TTCCSCEEECTTC-EEE-----------EC--TTSEEEEESGG----------------GTTCCEEE
T ss_pred cc-----------cccceeeccCCCe-EEE-----------ec--CcCceEEeccc----------------ccCcceec
Confidence 10 0112345555444 332 23 45888888753 23789999
Q ss_pred CceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHH---hcCcCcceEEEE-cccCCCCCceeEEEEEeccCCCCCCC
Q 036544 316 GDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVL---YMNPAINEVALV-AQRDKFWGKRPCAFVSLKWELSKKPT 391 (439)
Q Consensus 316 GD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 391 (439)
||+|++++|| ++++||.||+||++|++|+|.+||++| .+||.|.+++|+ ..+++.+|+.++++|+..... .+
T Consensus 233 GDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---~~ 308 (358)
T 4gs5_A 233 NDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---AL 308 (358)
T ss_dssp EEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---HH
T ss_pred CCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC---cC
Confidence 9999999888 667799999999999999999999877 468999998876 677888899999988765442 45
Q ss_pred HHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHh
Q 036544 392 EEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA 437 (439)
Q Consensus 392 ~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~ 437 (439)
.++|+++++++|+.|++|+.++++++||+|++|||+|++|++++.+
T Consensus 309 ~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 309 TERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp HHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred HHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 6899999999999999999999999999999999999999998764
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=5.9e-52 Score=401.75 Aligned_cols=323 Identities=20% Similarity=0.171 Sum_probs=264.1
Q ss_pred CCC-CCCeEEEeccCCCCCCceEEEchHHHHHHHHHh---hhhcCCCCCCEEEEcCCccchhhh-HHHHHHHhhcceEEE
Q 036544 75 ESE-WDPMALNYTSGTTSSPKGVVHCHRGLFIITVSS---LIDWRIPNQPVFLWTLPMFHENGW-SYSWGMAAVGGTNIC 149 (439)
Q Consensus 75 ~~~-~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~~~~g~~~~~ 149 (439)
.++ +++++|+|||||||.||+|+++|+++...+... ...+++.++|++++.+|+.|..+. ...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 445 889999999999999999999999997655544 334578999999999998655554 456778899999998
Q ss_pred eccCChHHHHHHHHhhCceeeechHHHHHHHhCCC----CCCCCCCCeEEEEeCCCCcHHHHHhhhh-cCCeeeccCCcc
Q 036544 150 LRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP----STKPLDRPVKILTSGASPPAAVLLRTES-LGFVVSHSYGLT 224 (439)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~l~~i~~~G~~~~~~~~~~~~~-~~~~v~~~yG~t 224 (439)
.+.+++..+++.|+++++|+++++|+++..|++.. ....+.++|.+++||+++++++.+++++ +|+++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 88889999999999999999999999999998764 2223679999999999999999999984 599999999999
Q ss_pred ccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCccccc
Q 036544 225 ETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSS 304 (439)
Q Consensus 225 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 304 (439)
|+++.++...... ....+.+.++. .++|+|+++|.+++.| +.|||+|+|. +.
T Consensus 242 E~~~~~~~~~~~~-------------~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQE-------------QNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECTT-------------CSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecCC-------------CCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 9965433222100 01234444566 8999998799999998 8999999983 33
Q ss_pred ccccCCCceecCceEEEcCCC------c---EEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCce
Q 036544 305 LCMRDNDWFYTGDIGVVHSDG------Y---LEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKR 375 (439)
Q Consensus 305 ~~~~~~g~~~TGD~~~~~~dg------~---~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 375 (439)
..|. ++||+|||+|+++++| + ++++||.||+||++|++|+|.+||++|.+||+|.++++++.+++..++.
T Consensus 294 ~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~ 372 (436)
T 3qov_A 294 EMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDE 372 (436)
T ss_dssp CSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEE
T ss_pred CCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcE
Confidence 4443 8899999999999998 5 6999999999999999999999999999999999999999998888889
Q ss_pred eEEEEEeccCCCCCCC----HHHHHHHHHhcCCCc-cccceEEeec--ccCCCCCCcccHHH
Q 036544 376 PCAFVSLKWELSKKPT----EEAIIEFCRARLPHY-MAHKSVIIED--ELPKTATGKIQKFV 430 (439)
Q Consensus 376 ~~~~v~~~~~~~~~~~----~~~l~~~~~~~l~~~-~~p~~~~~v~--~lP~t~~GKi~r~~ 430 (439)
++++|++. +.. .+ .+++++++++.|+.+ ++|..+.+++ +||+|+ ||++|..
T Consensus 373 l~a~v~~~-~~~--~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 373 MIVEVELS-DLS--TDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEC-TTC--CCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEc-Ccc--ccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 99999998 543 33 678999999999998 8999999999 999999 9998853
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.5e-51 Score=398.12 Aligned_cols=328 Identities=18% Similarity=0.157 Sum_probs=269.9
Q ss_pred CCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhh---hhcCCCCCCEEEEcCCc-cchhhhHHHHHHHhhcceEEEe
Q 036544 75 ESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSL---IDWRIPNQPVFLWTLPM-FHENGWSYSWGMAAVGGTNICL 150 (439)
Q Consensus 75 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 150 (439)
.+++++++|+|||||||.||+|+++|+++...+.... ..+++.++|++++.+|+ +|..++...+.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4668999999999999999999999999876544332 35678999999999998 5777777778888999999988
Q ss_pred ccCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCC--CCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccc
Q 036544 151 RKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STK--PLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTE 225 (439)
Q Consensus 151 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~--~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE 225 (439)
+.+++..+++.|+++++|+++++|+++..|++.. ... .+.++|.+++||+++++++.++++ .+|+++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 8889999999999999999999999999987653 122 247899999999999999999997 56999999999999
Q ss_pred cCcc--cccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccc
Q 036544 226 TAGF--VVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGS 303 (439)
Q Consensus 226 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 303 (439)
+++. ...+... ....+.+.++. .++|+|+++|.+++.| +.|||+|+|. +
T Consensus 249 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t 299 (443)
T 2y4o_A 249 VMGPGVACECVET--------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------T 299 (443)
T ss_dssp TTEEEEEEECTTT--------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeEEeccCCC--------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------C
Confidence 8543 2222100 00122334555 8999998789999988 8999999983 3
Q ss_pred cccccCCCceecCceEEEcCC-CcE-----EEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeE
Q 036544 304 SLCMRDNDWFYTGDIGVVHSD-GYL-----EIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPC 377 (439)
Q Consensus 304 ~~~~~~~g~~~TGD~~~~~~d-g~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 377 (439)
...|. ++||+|||+|+++++ |++ +++||.||+||++|++|+|.+||++|.+||+|.++++++++++..++.++
T Consensus 300 ~~~~p-~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~ 378 (443)
T 2y4o_A 300 KEAMP-VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLD 378 (443)
T ss_dssp CSSSC-CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEE
T ss_pred cccCh-hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEE
Confidence 34453 789999999999999 986 89999999999999999999999999999999999999988776778899
Q ss_pred EEEEecc--CCC-CCCCHHHHHHHHHhcCCCc-cccceEEee--cccCCCCCCcccHHHHH
Q 036544 378 AFVSLKW--ELS-KKPTEEAIIEFCRARLPHY-MAHKSVIIE--DELPKTATGKIQKFVLR 432 (439)
Q Consensus 378 ~~v~~~~--~~~-~~~~~~~l~~~~~~~l~~~-~~p~~~~~v--~~lP~t~~GKi~r~~l~ 432 (439)
++|++.+ +.. ...+.++++++++++|+.+ .+|..+.++ ++||+|++||++|+..+
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 9999876 321 1134578999999999887 588888887 59999999999997543
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.4e-51 Score=396.50 Aligned_cols=325 Identities=15% Similarity=0.090 Sum_probs=269.5
Q ss_pred CCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhh---hhcCCCCCCEEEEcCCc-cchhhhHHHHHHHhhcceEEEe
Q 036544 75 ESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSL---IDWRIPNQPVFLWTLPM-FHENGWSYSWGMAAVGGTNICL 150 (439)
Q Consensus 75 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 150 (439)
.+++++++|+|||||||.||+|+++|+++...+.... ..+++.++|++++.+|+ +|..++...+.++..|+++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4668999999999999999999999999876554332 35678899999999998 7788877778889999999988
Q ss_pred ccCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCC--CCCCCeEEEEeCCCCcHHHHHhhh-hcCCeeeccCCccc
Q 036544 151 RKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STK--PLDRPVKILTSGASPPAAVLLRTE-SLGFVVSHSYGLTE 225 (439)
Q Consensus 151 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~--~~~~l~~i~~~G~~~~~~~~~~~~-~~~~~v~~~yG~tE 225 (439)
+.+++..+++.|+++++|+++++|+++..|++.. ... ...++|.+++||+++++++.++++ .+|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 8889999999999999999999999999997653 122 247899999999999999999997 56999999999999
Q ss_pred cCcc--cccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccc
Q 036544 226 TAGF--VVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGS 303 (439)
Q Consensus 226 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 303 (439)
+++. +..+... ....+.+.++. .++|+|+++|.+++.| +.|||+|+|. +
T Consensus 247 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 247 VMGPGVASECVET--------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTEEEEEECCTTT--------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeeEEecCCC--------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 8543 2222210 00133344555 8999998789999988 8999999983 3
Q ss_pred cccccCCCceecCceEEEcC-CCcE-----EEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeE
Q 036544 304 SLCMRDNDWFYTGDIGVVHS-DGYL-----EIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPC 377 (439)
Q Consensus 304 ~~~~~~~g~~~TGD~~~~~~-dg~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 377 (439)
...|. ++||+|||+|++++ +|++ +++||.||+||++|++|+|.+||++|.+||+|.++++++++++.+++.++
T Consensus 298 ~~~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~ 376 (437)
T 2y27_A 298 KEALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLT 376 (437)
T ss_dssp CSSSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEE
T ss_pred cCCch-hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEE
Confidence 34453 88999999999998 6985 89999999999999999999999999999999999999988777788999
Q ss_pred EEEEeccCCCCC-CCHHHHHHHHHhcCCCc-cccceEEee--cccCCCCCCcccHHH
Q 036544 378 AFVSLKWELSKK-PTEEAIIEFCRARLPHY-MAHKSVIIE--DELPKTATGKIQKFV 430 (439)
Q Consensus 378 ~~v~~~~~~~~~-~~~~~l~~~~~~~l~~~-~~p~~~~~v--~~lP~t~~GKi~r~~ 430 (439)
++|++.++.... .+.++++++++++|+.+ .+|..+.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 999987654311 23578999999999988 588888888 5999999 9999864
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.7e-46 Score=364.73 Aligned_cols=318 Identities=19% Similarity=0.212 Sum_probs=239.0
Q ss_pred Cccc---CCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 036544 1 NVIQ---RLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESE 77 (439)
Q Consensus 1 Pl~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (439)
|||+ .++.+++.++|+.++++++|++....+.+.+........ ....++.++... ............++
T Consensus 111 pl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 182 (480)
T 3t5a_A 111 PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-SPPSIIEVDLLD-------LDAPNGYTFKEDEY 182 (480)
T ss_dssp EECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------CCEEEEGGGSC-------TTCC---CCCCSSC
T ss_pred eeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-cccceeEecccc-------cccccCCCCCCCCC
Confidence 6777 788999999999999999999998887776654433311 011222222111 01111111223567
Q ss_pred CCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCC------CCEEEEcCCccchhhhHH-HHHHHhhcceEEEe
Q 036544 78 WDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPN------QPVFLWTLPMFHENGWSY-SWGMAAVGGTNICL 150 (439)
Q Consensus 78 ~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~------~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~ 150 (439)
+++++|+|||||||.||||+++|+++...+......+.+.+ +|++++.+|++|.+|+.. ++.+++.|+++++.
T Consensus 183 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 262 (480)
T 3t5a_A 183 PSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLT 262 (480)
T ss_dssp CSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEEC
T ss_pred CceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEE
Confidence 89999999999999999999999999988887777777776 899999999999999765 68889999999998
Q ss_pred ccC----ChHHHHHHHHhhCceeeechHHHHHHHhCC------CCCCCCCCCeEEEEeCCCCcHHHHHhhh-hcC-----
Q 036544 151 RKV----DVPIIYSVIKHHGVTHICGALVVLNMLSSS------PSTKPLDRPVKILTSGASPPAAVLLRTE-SLG----- 214 (439)
Q Consensus 151 ~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~------~~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~----- 214 (439)
++. ++..+++.++++++| +..+|+++..++.. .....++++|.+++||+++++++.+++. .++
T Consensus 263 ~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~ 341 (480)
T 3t5a_A 263 SPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQ 341 (480)
T ss_dssp CHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCC
T ss_pred CHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCC
Confidence 653 899999999999999 78888888777642 1456788999999999999999999987 442
Q ss_pred -CeeeccCCccccCcccccccccccccccc-hhHH-------------HHhhhccCceeccccccccccCCCCccccCCC
Q 036544 215 -FVVSHSYGLTETAGFVVSCAWKSQWNTLA-DTER-------------ARLKARQGVRTIGLADMDVVHPETGMSVKHDG 279 (439)
Q Consensus 215 -~~v~~~yG~tE~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~ 279 (439)
+.+++.||+||++..++............ .... .....++|.|++ . +++|+|++++.+++.|
T Consensus 342 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g- 418 (480)
T 3t5a_A 342 ERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG- 418 (480)
T ss_dssp GGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT-
T ss_pred hhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC-
Confidence 47999999999988776543221100000 0000 112347899999 6 9999999779999998
Q ss_pred CcceeEEEecCcccccccCCccccccccc-----------CCCceecCceEEEcCCCcEEEecc
Q 036544 280 QSQGEIVFRSGSIMLGYLKDQEGSSLCMR-----------DNDWFYTGDIGVVHSDGYLEIKDR 332 (439)
Q Consensus 280 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~g~~~TGD~~~~~~dg~~~~~GR 332 (439)
+.|||+|+|++++.|||++|+.|...|. .+|||+|||+|+++ ||+++|+||
T Consensus 419 -~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 419 -TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp -BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred -CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 8999999999999999999999999884 46799999999997 999999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=7e-32 Score=255.17 Aligned_cols=234 Identities=17% Similarity=0.106 Sum_probs=178.2
Q ss_pred CCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHh---hhhcCCCCCCEEEEcCCc-cchhhhHHHHHHHhhcceEEEe
Q 036544 75 ESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSS---LIDWRIPNQPVFLWTLPM-FHENGWSYSWGMAAVGGTNICL 150 (439)
Q Consensus 75 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~---~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 150 (439)
.+++++++|+|||||||.||+|+++|+++...+... ...+++.++|++++.+|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999998877643 345678899999999999 99999988777788888 6666
Q ss_pred ccCChH-----------------------HHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHH
Q 036544 151 RKVDVP-----------------------IIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAA 205 (439)
Q Consensus 151 ~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~ 205 (439)
..+++. .+++.|+++++|+++++|+++..|++.. ....+.++|.+++||++++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 667777 8888999999999999999999998764 123456899999999999999
Q ss_pred HHHhhh-hc--CCeeeccCCccccCcccccccccccccccchhHHHHhhhccCce------eccccccccccCCCCcccc
Q 036544 206 VLLRTE-SL--GFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVR------TIGLADMDVVHPETGMSVK 276 (439)
Q Consensus 206 ~~~~~~-~~--~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~iv~~~~~~~~~ 276 (439)
+.++++ +. ++++++.||+||+++++..+.. .++|.+ .+++ .++|+|+++|.+++
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp 309 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTVE 309 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBCC
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCCC
Confidence 999998 54 8999999999999877654431 136777 7787 99999998999999
Q ss_pred CCCCcceeEEEecCcccccccCCcccccccccCCCceecCceEEEcCC--C-------cEEEecccCceeeeCce
Q 036544 277 HDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSD--G-------YLEIKDRSKDVIISGGE 342 (439)
Q Consensus 277 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~d--g-------~~~~~GR~~d~i~~~G~ 342 (439)
.| +.|||+|++.. ...+ -.+|+|||++++.+. | .+..++|.++..++.|.
T Consensus 310 ~G--~~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 310 YG--ERGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp TT--CEEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CC--CceEEEEEEcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 98 89999998732 1111 124899999987543 2 34567777777777764
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.62 E-value=4.5e-16 Score=118.65 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=73.3
Q ss_pred cccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCC--CCCHHHHHHHHHhcCC-Ccc
Q 036544 331 DRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSK--KPTEEAIIEFCRARLP-HYM 407 (439)
Q Consensus 331 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~l~~~~~~~l~-~~~ 407 (439)
||.||+|+++|++++|.+||++|.+||+|.++++++++++.+++.+++++++ ++... ..+.+++.+.+++.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999898888887778999999998 55321 0133455555555543 234
Q ss_pred ccceEEeec--ccCCCCCCcccHH
Q 036544 408 AHKSVIIED--ELPKTATGKIQKF 429 (439)
Q Consensus 408 ~p~~~~~v~--~lP~t~~GKi~r~ 429 (439)
++..+.+++ .||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 445788887 89999 9999873
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.61 E-value=1e-15 Score=116.90 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=73.1
Q ss_pred cccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCC-CCHHHHHHHHHhcCCCc-cc
Q 036544 331 DRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKK-PTEEAIIEFCRARLPHY-MA 408 (439)
Q Consensus 331 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~~~l~~~-~~ 408 (439)
.|.||||+++|.+|+|.+||++|.+||+|.++++++++++.+++.+.++|+..++.... ...+++.+.+++.+..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 48999999999999999999999999999999999999999999999999988765421 12244555555554332 34
Q ss_pred cceEEeec--ccCCCCCCcccH
Q 036544 409 HKSVIIED--ELPKTATGKIQK 428 (439)
Q Consensus 409 p~~~~~v~--~lP~t~~GKi~r 428 (439)
+..+.+++ .||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 44566664 79998 799987
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.98 E-value=8.1e-09 Score=100.55 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=64.1
Q ss_pred cccCCCCcceeEEEecCcccccccCCcccccccccCCCceecCceEEEcC----CCcEEEecccCceeeeCceeecHHHH
Q 036544 274 SVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHS----DGYLEIKDRSKDVIISGGENISSAEV 349 (439)
Q Consensus 274 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~v~~~~i 349 (439)
.|..| +.+||+++.. .|+|+ |++||+++++. ..++.|.||.+|++++.|++++..+|
T Consensus 392 eVe~G--~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v 452 (609)
T 4b2g_A 392 HVEVG--KEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAEL 452 (609)
T ss_dssp GCCTT--CEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHH
T ss_pred HcCCC--CeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHH
Confidence 44555 7899999874 35554 99999999873 46899999999999999999999999
Q ss_pred HHHHhc------Cc--CcceEEEEcccCCCCCceeEEEEEec
Q 036544 350 ESVLYM------NP--AINEVALVAQRDKFWGKRPCAFVSLK 383 (439)
Q Consensus 350 E~~l~~------~~--~v~~~~v~~~~~~~~~~~~~~~v~~~ 383 (439)
|++|.+ .. .|.+..++.......+ .-+.|.++.
T Consensus 453 ~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~-Hyv~~wEl~ 493 (609)
T 4b2g_A 453 QKAVDNASKLLREVNTSVVEYTSFADTKTIPG-HYVIYWELL 493 (609)
T ss_dssp HHHHHHHHHGGGGTTEEEEEEEEEEECSSSSC-EEEEEEEEE
T ss_pred HHHHHHHHHhhhccCCeEEEEEEecCCCCCCC-cEEEEEEEe
Confidence 998873 22 3557666543332222 333444553
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.95 E-value=5.2e-09 Score=101.74 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=50.4
Q ss_pred cceeEEEecCcccccccCCcccccccccCCCceecCceEEEcC----CCcEEEecccCceeeeCceeecHHHHHHHHhcC
Q 036544 281 SQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHS----DGYLEIKDRSKDVIISGGENISSAEVESVLYMN 356 (439)
Q Consensus 281 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 356 (439)
+.+||++++.+ |.|+ |++||++++.. ..++.|.||.+|++++.|++++..+||++|.+.
T Consensus 385 ~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 385 CTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred ceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 78999998852 4443 99999999875 358899999999999999999999999998743
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.86 E-value=8.3e-08 Score=93.09 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=63.9
Q ss_pred cccCCCCcceeEEEecCcccccccCCcccccccccCCCceecCceEEEcCC----CcEEEecccCceeeeCceeecHHHH
Q 036544 274 SVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSD----GYLEIKDRSKDVIISGGENISSAEV 349 (439)
Q Consensus 274 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~d----g~~~~~GR~~d~i~~~G~~v~~~~i 349 (439)
.|..| +.+||++++.. |.|+ |++||++++..- .++.|.||.++++++.|++++..+|
T Consensus 387 eve~G--~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v 447 (581)
T 4epl_A 387 QVKIG--EEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDL 447 (581)
T ss_dssp GCCTT--CEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHH
T ss_pred HcCCC--CeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHH
Confidence 44555 78999998852 4443 999999998632 5789999999999999999999999
Q ss_pred HHHHhc------Cc--CcceEEEEcccCCCCCceeEEEEEec
Q 036544 350 ESVLYM------NP--AINEVALVAQRDKFWGKRPCAFVSLK 383 (439)
Q Consensus 350 E~~l~~------~~--~v~~~~v~~~~~~~~~~~~~~~v~~~ 383 (439)
|++|.+ .. .|.+..++.......+ .-+.|.++.
T Consensus 448 ~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~wE~~ 488 (581)
T 4epl_A 448 QLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFWEIS 488 (581)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEEEES
T ss_pred HHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEEeec
Confidence 998874 22 3567766653332222 333444553
No 42
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=82.20 E-value=6.5 Score=38.17 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=70.0
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.++++.+..+.++ ..+|++.+...+..... ..++.++|++..+++-+... ...+++++..|+..+.+..
T Consensus 33 ~p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 33 YALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp HHTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCC
Confidence 4456777655444443 36899988766554443 34889999998888865432 3446778888888887764
Q ss_pred -CChHHHHHHHHhhCceeeechHHHHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALVVLNM 179 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~~~~~ 179 (439)
+..+.+...+++.++++++........
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 135 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQK 135 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHH
Confidence 677889999999999999877655443
No 43
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=76.07 E-value=21 Score=34.42 Aligned_cols=97 Identities=5% Similarity=-0.090 Sum_probs=67.7
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhh---hhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSL---IDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++....+ ....+|++.+...+.... ...++.++|++...++-+... ...+++++..|+..+.+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 4566776643211 235689988876554443 345789999999888865432 3446777888888887764
Q ss_pred -CChHHHHHHHHhhCceeeechHHHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALVVLN 178 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~~~~ 178 (439)
+..+.+...+++.++.+++..+....
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 131 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLP 131 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHH
Confidence 67788999999999999998766543
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=75.24 E-value=14 Score=35.63 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=66.4
Q ss_pred CCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec
Q 036544 75 ESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR 151 (439)
Q Consensus 75 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 151 (439)
..++.+|++.. .+| -.+|++.+...+..... ..++.++|++...++-+... ...+++++..|+..+.+.
T Consensus 34 ~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 34 NHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAAN 105 (536)
T ss_dssp GSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECC
T ss_pred cCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccC
Confidence 35667776643 222 35799888765554443 35789999998888765432 344677888888888776
Q ss_pred c-CChHHHHHHHHhhCceeeechHHH
Q 036544 152 K-VDVPIIYSVIKHHGVTHICGALVV 176 (439)
Q Consensus 152 ~-~~~~~~~~~i~~~~~t~~~~~p~~ 176 (439)
. ...+.+...+++.++..++.....
T Consensus 106 ~~~~~~~l~~~l~~~~~~~~i~~~~~ 131 (536)
T 3ni2_A 106 PFSTPAELAKHAKASRAKLLITQACY 131 (536)
T ss_dssp TTCCHHHHHHHHHHHTEEEEEECGGG
T ss_pred CCCCHHHHHHHHHhcCCEEEEEChHH
Confidence 4 677889999999999999876543
No 45
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=74.77 E-value=22 Score=34.30 Aligned_cols=102 Identities=5% Similarity=-0.079 Sum_probs=69.8
Q ss_pred CCCCCeEEEeccC-CCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec
Q 036544 76 SEWDPMALNYTSG-TTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR 151 (439)
Q Consensus 76 ~~~~~a~i~~TSG-tTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 151 (439)
.++.+|++....+ ..+. .-.+|++.+...+..... ..++.++|++..+++-+... ...+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccC
Confidence 4667787765322 1222 235788888765554443 45789999999888765432 344677888888888876
Q ss_pred c-CChHHHHHHHHhhCceeeechHHHHHHH
Q 036544 152 K-VDVPIIYSVIKHHGVTHICGALVVLNML 180 (439)
Q Consensus 152 ~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l 180 (439)
. +..+.+..++++.+++.++........+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 4 6778899999999999998876554433
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=73.56 E-value=18 Score=34.50 Aligned_cols=94 Identities=10% Similarity=-0.053 Sum_probs=67.6
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.|+.+|++.- +-.+|++.+...+..... ..++.++|++..+++-+... ...+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMVD---------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 4567777641 246899988766555444 34789999999888765432 3446777888888888764
Q ss_pred -CChHHHHHHHHhhCceeeechHHHHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALVVLNM 179 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~~~~~ 179 (439)
...+.+..++++.++.+++........
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 677889999999999999987665443
No 47
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=71.81 E-value=30 Score=32.90 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=65.2
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++.. .+ +..+|++.+...+..... ..++.++|++..+++-+... ...+++++..|+..+.++.
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 4556666642 11 246899988766554443 34788999999888866443 3446778888988887765
Q ss_pred -CChHHHHHHHHhhCceeeec--hHHHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICG--ALVVLN 178 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~--~p~~~~ 178 (439)
...+.+..++++.+++.++. ......
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 115 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVAD 115 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhh
Confidence 57788889999999998887 544433
No 48
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.17 E-value=31 Score=33.60 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=66.8
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++..... | ....+|++.+...+..... ..++++||++..+++-+... +..+++++..|+..+.+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 5678888765331 2 2457899888765554443 45889999999888865442 3446777888888877754
Q ss_pred -CChHHHHHHHHhhCceeeech
Q 036544 153 -VDVPIIYSVIKHHGVTHICGA 173 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~ 173 (439)
+....+...+++.++.+++..
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~ 165 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCI 165 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEE
T ss_pred cCCHHHHHHHHHhcCCCEEEEe
Confidence 678889999999999988864
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=69.18 E-value=34 Score=32.71 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.|+.+|++.. | ....+|++.+...+..... ..++.++|++..+++-+... ...+++++..|+..+.++.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCc
Confidence 4566776653 1 1246899988766554443 44789999999888865432 3346778888888888764
Q ss_pred -CChHHHHHHHHhhCceeeechHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALV 175 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~ 175 (439)
+..+.+..++++.++.+++....
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~ 124 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAP 124 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGG
T ss_pred ccCHHHHHHHHHhcCceEEEECCc
Confidence 67788888999999998886543
No 50
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=68.37 E-value=35 Score=33.08 Aligned_cols=94 Identities=5% Similarity=-0.060 Sum_probs=66.7
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++.. .-.+|++.+...+..... ..++.++|++...++-+... ...+++++..|+..+.+..
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 4567776631 135899888765544433 35789999998888765432 3346777888888887764
Q ss_pred -CChHHHHHHHHhhCceeeechHHHHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALVVLNM 179 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~~~~~ 179 (439)
+..+.+..++++.++..++..+.....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 677888999999999999987755443
No 51
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=68.19 E-value=48 Score=31.04 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=71.4
Q ss_pred CCCCCeEEEecc--CCCCCCceEEEchHHHHHHHHHhhhh---cCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEe
Q 036544 76 SEWDPMALNYTS--GTTSSPKGVVHCHRGLFIITVSSLID---WRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICL 150 (439)
Q Consensus 76 ~~~~~a~i~~TS--GtTG~PK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~ 150 (439)
.++.+|++.... +.+| ....+|++.+...+...... .+. ++|++..+++-+... ...+++++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 567778776542 2222 33678999987666555443 354 899998877765432 34467788888888877
Q ss_pred cc----CChHHHHHHHHhhCceeeechHHHHHHHhCC
Q 036544 151 RK----VDVPIIYSVIKHHGVTHICGALVVLNMLSSS 183 (439)
Q Consensus 151 ~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 183 (439)
.. ...+.+..++++.++..++........+...
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 54 3467888999999999999887766665443
No 52
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=67.66 E-value=40 Score=32.73 Aligned_cols=99 Identities=13% Similarity=0.013 Sum_probs=68.4
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hc-CCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DW-RIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR 151 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 151 (439)
.++.+|++.... .| ....+|++.+...+..... .. ++.++|++..+++-+... ...+++++..|+..+.+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 566777765421 12 2356899888765544433 33 788999998888765432 334677888888888776
Q ss_pred c-CChHHHHHHHHhhCceeeechHHHHHH
Q 036544 152 K-VDVPIIYSVIKHHGVTHICGALVVLNM 179 (439)
Q Consensus 152 ~-~~~~~~~~~i~~~~~t~~~~~p~~~~~ 179 (439)
. +..+.+...+++.++..++..+.....
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 159 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQE 159 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHH
Confidence 4 677888899999999998876655443
No 53
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=67.61 E-value=23 Score=23.96 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHHHHHHHhcCCCc
Q 036544 346 SAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHY 406 (439)
Q Consensus 346 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~~ 406 (439)
..++++.|.++|.|.+|..+..+.+ ..+.+.. .+.+++.+++.+.+...
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-------~d~~~l~~~i~~~l~~~ 63 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-------DTLKDLDQFITEKIRKM 63 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-------SSHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-------CCHHHHHHHHHHHhccC
Confidence 4789999999999999999876543 4444455 46788888887665443
No 54
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=67.14 E-value=42 Score=31.87 Aligned_cols=92 Identities=8% Similarity=-0.139 Sum_probs=64.1
Q ss_pred CCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-
Q 036544 77 EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK- 152 (439)
Q Consensus 77 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~- 152 (439)
++.++.++...+ | -.+|++.+...+..... ..++.++|++...++-+... ...+++++..|+..+.++.
T Consensus 14 p~~~a~~~~~~~--~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~ 86 (503)
T 4fuq_A 14 DDPHKLAIETAA--G----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTA 86 (503)
T ss_dssp SCTTSEEEEETT--C----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTT
T ss_pred CCCceEEEecCC--C----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCC
Confidence 445555554322 1 25899888766554443 34789999999888766432 3446778888888887764
Q ss_pred CChHHHHHHHHhhCceeeechHH
Q 036544 153 VDVPIIYSVIKHHGVTHICGALV 175 (439)
Q Consensus 153 ~~~~~~~~~i~~~~~t~~~~~p~ 175 (439)
+..+.+..++++.++.+++..+.
T Consensus 87 ~~~~~l~~il~~~~~~~vi~~~~ 109 (503)
T 4fuq_A 87 YTLHELDYFITDAEPKIVVCDPS 109 (503)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGG
T ss_pred CCHHHHHHHHHhcCCcEEEECch
Confidence 67788999999999999887654
No 55
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=64.32 E-value=50 Score=32.69 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=66.5
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec-
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR- 151 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 151 (439)
.++.+|++... ..+| ..-.+|++.+...+..... ..++.++|++..++|-.... ...+++++..|+..+.+.
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 35677777542 2222 2356899988766554443 45889999999998876543 344677788888877775
Q ss_pred cCChHHHHHHHHhhCceeeech
Q 036544 152 KVDVPIIYSVIKHHGVTHICGA 173 (439)
Q Consensus 152 ~~~~~~~~~~i~~~~~t~~~~~ 173 (439)
.+.++.+...+++.++.++++.
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~ 186 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITA 186 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEc
Confidence 4788899999999999888764
No 56
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=64.26 E-value=24 Score=34.06 Aligned_cols=80 Identities=5% Similarity=-0.161 Sum_probs=59.1
Q ss_pred EEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CChHHHHHHHHhhCceeeec
Q 036544 97 VHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VDVPIIYSVIKHHGVTHICG 172 (439)
Q Consensus 97 ~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 172 (439)
.+|++.+...+..... ..++.++|++..+++-+... ....++++..|+..+.+.. +..+.+...+++.++.+++.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 5899888765554443 35789999998888765442 3346777888888887764 67788999999999999887
Q ss_pred hHHHH
Q 036544 173 ALVVL 177 (439)
Q Consensus 173 ~p~~~ 177 (439)
.+...
T Consensus 131 ~~~~~ 135 (548)
T 2d1s_A 131 SKKGL 135 (548)
T ss_dssp CTTTH
T ss_pred cHHHH
Confidence 65543
No 57
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=63.29 E-value=29 Score=33.19 Aligned_cols=92 Identities=5% Similarity=-0.122 Sum_probs=64.7
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++.. | ..+|++.+...+..... ..++.++|++...++-+... ...+++++..|+..+.++.
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4556666532 1 35799888765554443 45789999999888866443 3346778888888887764
Q ss_pred -CChHHHHHHHHhhCceeeechHHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALVVL 177 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~~~ 177 (439)
+....+...+++.++..++..+...
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 131 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALV 131 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhh
Confidence 6778888999999999888765543
No 58
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=62.16 E-value=45 Score=32.31 Aligned_cols=91 Identities=9% Similarity=-0.085 Sum_probs=65.1
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++.. .-.+|++.+...+..... ..++.++|++...++-+..+ ...+++++..|+..+.+..
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 5667776641 125899888766554443 45789999999888765443 3446778888888887764
Q ss_pred -CChHHHHHHHHhhCceeeechHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALVV 176 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~~ 176 (439)
...+.+..++++.++..++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 677889999999999988876543
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=61.53 E-value=68 Score=31.04 Aligned_cols=100 Identities=5% Similarity=-0.191 Sum_probs=70.0
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++....+ ..-.+|++.+...+..... ..++.++|++..+++-+.. -...+++++..|+..+.+..
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEecC
Confidence 4567777655411 2356899988766554443 4478899999988876544 23346778888888888765
Q ss_pred C----ChHHHHHHHHhhCceeeechHHHHHHHh
Q 036544 153 V----DVPIIYSVIKHHGVTHICGALVVLNMLS 181 (439)
Q Consensus 153 ~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 181 (439)
. ....+...++..++..++........+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 3 2356778889999999998888776654
No 60
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=61.14 E-value=52 Score=27.21 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=53.2
Q ss_pred CEEEEcCC-ccchhhhHHHHHHHh-hcceEEEec-cCChHHHHHHHHhhCceeeec--h----HHH--HHHHhCCCCCCC
Q 036544 120 PVFLWTLP-MFHENGWSYSWGMAA-VGGTNICLR-KVDVPIIYSVIKHHGVTHICG--A----LVV--LNMLSSSPSTKP 188 (439)
Q Consensus 120 d~~~~~~p-~~~~~g~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~--~----p~~--~~~l~~~~~~~~ 188 (439)
.+++.+.+ -.|..|....-..+. .|-.++.+. ...++.+.+.+.+++++.+.. + +.+ +..+.+......
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~ 173 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK 173 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC
Confidence 34444444 388888877555554 454555554 457789999999999997776 2 211 222222111111
Q ss_pred CCCCeEEEEeCCCCcHHHHHhh
Q 036544 189 LDRPVKILTSGASPPAAVLLRT 210 (439)
Q Consensus 189 ~~~l~~i~~~G~~~~~~~~~~~ 210 (439)
...--.+++||.+++++..+.+
T Consensus 174 ~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 174 LRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp CGGGSEEEEESSSCCHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHh
Confidence 2111358899999998765543
No 61
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=60.27 E-value=52 Score=31.58 Aligned_cols=89 Identities=11% Similarity=0.006 Sum_probs=63.2
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec-
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR- 151 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 151 (439)
.|+.+|++. + .-.+|++.+...+..... ..++.++|++...++-+... ...+++++..|+..+.+.
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF-YIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH-HHHHHHHHHhCcEEecCCC
Confidence 566777763 1 246899988765554443 45789999999888765332 344677778888777665
Q ss_pred cCChHHHHHHHHhhCceeeechH
Q 036544 152 KVDVPIIYSVIKHHGVTHICGAL 174 (439)
Q Consensus 152 ~~~~~~~~~~i~~~~~t~~~~~p 174 (439)
......+...+++.++.+++...
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 46778888999999999888654
No 62
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=59.28 E-value=25 Score=23.57 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHHHHHHHhcCCCc
Q 036544 346 SAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHY 406 (439)
Q Consensus 346 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~~ 406 (439)
..++.+.|.++|.|.+|..+..+.+ ..+.+.. .+.+++.+++.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~-------~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA-------DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC-------SSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE-------CCHHHHHHHHHHHhcCC
Confidence 4789999999999999998876543 3444444 46788888887665443
No 63
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=58.50 E-value=50 Score=34.56 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=66.7
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.++.+|++.. .+| -.+|++.+...+..... ..++.++|++..+++-+.. -...+++++..|+..+.+.+
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 5677777643 222 35799888765554443 3578999999988886633 23446778888988888764
Q ss_pred -CChHHHHHHHHhhCceeeechHHH
Q 036544 153 -VDVPIIYSVIKHHGVTHICGALVV 176 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~p~~ 176 (439)
+.++.+...+++.++.+++....+
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHH
Confidence 678889999999999999876543
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=57.17 E-value=53 Score=32.61 Aligned_cols=95 Identities=8% Similarity=0.026 Sum_probs=66.9
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHh---hh-hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSS---LI-DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR 151 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~---~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 151 (439)
.++.+|++.... .+| ....+|++.+...+... .. ..++.++|++...+|..... ...+++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 567778775422 222 23468998887555433 33 55788999999998876543 334677788888877775
Q ss_pred -cCChHHHHHHHHhhCceeeechH
Q 036544 152 -KVDVPIIYSVIKHHGVTHICGAL 174 (439)
Q Consensus 152 -~~~~~~~~~~i~~~~~t~~~~~p 174 (439)
.+....+...+++.++.++++..
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcc
Confidence 47888999999999999988754
No 65
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=56.81 E-value=67 Score=30.76 Aligned_cols=89 Identities=10% Similarity=-0.046 Sum_probs=62.4
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEec-
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR- 151 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 151 (439)
.++.+|++. + ...+|++.+...+..... ..++.++|++...++-+... ...+++++..|+..+.+.
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF-FEVIFALFRLGALPVFALP 107 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCeEEecCCC
Confidence 355666653 1 146899888765554443 34789999999888765432 344677788888877665
Q ss_pred cCChHHHHHHHHhhCceeeechH
Q 036544 152 KVDVPIIYSVIKHHGVTHICGAL 174 (439)
Q Consensus 152 ~~~~~~~~~~i~~~~~t~~~~~p 174 (439)
....+.+..++++.++..++..+
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCHHHHHHHHHhCCCCEEEecc
Confidence 46778888999999999887654
No 66
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=55.16 E-value=38 Score=23.34 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHHHHHHHhcCCCc
Q 036544 346 SAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHY 406 (439)
Q Consensus 346 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~~ 406 (439)
..++++.|.++|+|.+|..+..+.+ ..+.+.. .+.+++.+++.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~-------~d~~~l~~~l~~~l~~~ 63 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRL-------KDVEELDDVVTQGILSL 63 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEE-------SSGGGHHHHCCCCCTTS
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEE-------CCHHHHHHHHHHhcccC
Confidence 5788999999999999999886543 4444555 35677888876655443
No 67
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=52.45 E-value=67 Score=30.45 Aligned_cols=76 Identities=11% Similarity=-0.053 Sum_probs=55.1
Q ss_pred EEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CChHHHHHHHHhhCceeeec
Q 036544 97 VHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VDVPIIYSVIKHHGVTHICG 172 (439)
Q Consensus 97 ~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 172 (439)
.+|++.+...+..... ..++.++|++...++-+.. -...+++++..|+..+.+.. ...+.+..++++.++..++.
T Consensus 26 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e-~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~ 104 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPE-MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS 104 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEE
T ss_pred eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEe
Confidence 5799888766554443 3478899998887765543 23446778888888887764 67788889999999888775
Q ss_pred h
Q 036544 173 A 173 (439)
Q Consensus 173 ~ 173 (439)
.
T Consensus 105 ~ 105 (512)
T 3fce_A 105 A 105 (512)
T ss_dssp S
T ss_pred c
Confidence 4
No 68
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=47.53 E-value=66 Score=30.38 Aligned_cols=77 Identities=6% Similarity=-0.114 Sum_probs=57.6
Q ss_pred EEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CChHHHHHHHHhhCceeeechH
Q 036544 97 VHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VDVPIIYSVIKHHGVTHICGAL 174 (439)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p 174 (439)
.+|++.+...+......+.-.++|++...++-+.. -...+++++..|+..+.+.. +..+.+...+++.++++++...
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQ-SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESS
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcc
Confidence 58999988777666665543489999888886543 23446778888888888764 6788899999999998887643
No 69
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=44.64 E-value=66 Score=30.57 Aligned_cols=76 Identities=11% Similarity=-0.092 Sum_probs=55.6
Q ss_pred EEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CChHHHHHHHHhhCceeeec
Q 036544 97 VHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VDVPIIYSVIKHHGVTHICG 172 (439)
Q Consensus 97 ~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 172 (439)
.+|++.+...+..... ..++.++|++...++-+.. -...+++++..|+..+.+.. ...+.+..++++.+++.++.
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 4789888766554443 4578899999887776543 23346777888888887764 67788999999999988875
Q ss_pred h
Q 036544 173 A 173 (439)
Q Consensus 173 ~ 173 (439)
.
T Consensus 108 ~ 108 (521)
T 3l8c_A 108 I 108 (521)
T ss_dssp S
T ss_pred c
Confidence 4
No 70
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=43.57 E-value=87 Score=30.11 Aligned_cols=82 Identities=7% Similarity=-0.122 Sum_probs=58.8
Q ss_pred EEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CC-------hHHHHHHHHh
Q 036544 96 VVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VD-------VPIIYSVIKH 164 (439)
Q Consensus 96 v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~i~~ 164 (439)
-.+|++.+...+..... ..++.++|++..+++-+... ...+++++..|+..+.+.. +. ...+...+++
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 56899988766554443 34789999999888865432 3446778888888887754 33 5678888899
Q ss_pred hCceeeechHHHHH
Q 036544 165 HGVTHICGALVVLN 178 (439)
Q Consensus 165 ~~~t~~~~~p~~~~ 178 (439)
.++..++.......
T Consensus 127 ~~~~~ii~~~~~~~ 140 (576)
T 3gqw_A 127 CQPAAIITGDEWLP 140 (576)
T ss_dssp HCCSEEEECGGGHH
T ss_pred cCCCEEEecHHHHH
Confidence 99998887655433
No 71
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=41.62 E-value=1.7e+02 Score=27.91 Aligned_cols=95 Identities=7% Similarity=-0.138 Sum_probs=62.7
Q ss_pred CCCCCeEEEeccCCCCCC--ceEEEchHHHHHHHHHhhhh---cCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEe
Q 036544 76 SEWDPMALNYTSGTTSSP--KGVVHCHRGLFIITVSSLID---WRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICL 150 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~P--K~v~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~ 150 (439)
.|+.+|++...+ ..+.. ..-.+|++.+...+...... .+. ++|++...++-+... ...+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 566777765432 22222 23568998887655544433 356 799998888765443 33467778888888877
Q ss_pred cc-CChHHHHHHHHhhCceeeech
Q 036544 151 RK-VDVPIIYSVIKHHGVTHICGA 173 (439)
Q Consensus 151 ~~-~~~~~~~~~i~~~~~t~~~~~ 173 (439)
.. +....+..++++.++..++..
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~ 133 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVC 133 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEc
Confidence 64 677888899999998887754
No 72
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=41.58 E-value=1.6e+02 Score=28.85 Aligned_cols=88 Identities=6% Similarity=-0.171 Sum_probs=62.0
Q ss_pred CCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc
Q 036544 76 SEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK 152 (439)
Q Consensus 76 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 152 (439)
.|+.+|++.. .-.+|++.+...+..... ..++.+++++..+++-+... ...+++.+..|+..+.++.
T Consensus 40 ~Pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRDR---------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES-ITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEcC---------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCc
Confidence 5667777641 125899988766554443 34789999998888865432 3446778888888888865
Q ss_pred -CChHHHHHHHHhhCceeeech
Q 036544 153 -VDVPIIYSVIKHHGVTHICGA 173 (439)
Q Consensus 153 -~~~~~~~~~i~~~~~t~~~~~ 173 (439)
...+.+..++++.++..++..
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 556778888899999888743
No 73
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=37.51 E-value=1.3e+02 Score=29.43 Aligned_cols=88 Identities=9% Similarity=-0.070 Sum_probs=62.1
Q ss_pred CCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-
Q 036544 77 EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK- 152 (439)
Q Consensus 77 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~- 152 (439)
++.+|++. | .-.+|++.+...+..... ..++.+++++..+++-+... ...+++++..|+..+.+..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~-vva~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAEL-YITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHH-HHHHHHHHhcCeEEccCCcc
Confidence 56677763 1 135899988766554444 34789999999888765432 3346778888888777754
Q ss_pred CChHHHHHHHHhhCceeeechH
Q 036544 153 VDVPIIYSVIKHHGVTHICGAL 174 (439)
Q Consensus 153 ~~~~~~~~~i~~~~~t~~~~~p 174 (439)
.....+..++++.++.+++...
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 5667888889999988887654
No 74
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=37.30 E-value=1.1e+02 Score=23.71 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=52.0
Q ss_pred CEEEEcCC-ccchhhhHHHHHHHhhcc-eEEEec-cCChHHHHHHHHhhCceeeechHH------HHHHHhCCCCCCCCC
Q 036544 120 PVFLWTLP-MFHENGWSYSWGMAAVGG-TNICLR-KVDVPIIYSVIKHHGVTHICGALV------VLNMLSSSPSTKPLD 190 (439)
Q Consensus 120 d~~~~~~p-~~~~~g~~~~~~~~~~g~-~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~------~~~~l~~~~~~~~~~ 190 (439)
.+++.+.+ -.|..|...+-..+...| .++... ...++.+.+.+.+++++++..+.. .+..+.+........
T Consensus 20 ~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~ 99 (161)
T 2yxb_A 20 KVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGAD 99 (161)
T ss_dssp EEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCC
Confidence 34444444 388888777555555444 444444 357889999999999988764321 222222221111122
Q ss_pred CCeEEEEeCCCCcHHHHHhhhhcCCe
Q 036544 191 RPVKILTSGASPPAAVLLRTESLGFV 216 (439)
Q Consensus 191 ~l~~i~~~G~~~~~~~~~~~~~~~~~ 216 (439)
. ..+++||...+ .....+++.|+.
T Consensus 100 ~-i~v~vGG~~~~-~~~~~l~~~G~d 123 (161)
T 2yxb_A 100 D-IPVVLGGTIPI-PDLEPLRSLGIR 123 (161)
T ss_dssp T-SCEEEEECCCH-HHHHHHHHTTCC
T ss_pred C-CEEEEeCCCch-hcHHHHHHCCCc
Confidence 2 34677776554 444445555654
No 75
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=34.63 E-value=1.8e+02 Score=27.37 Aligned_cols=76 Identities=12% Similarity=-0.027 Sum_probs=53.9
Q ss_pred EEEchHHHHHHHHHhhhhc----CCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CChHHHHHHHHhhCceee
Q 036544 96 VVHCHRGLFIITVSSLIDW----RIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VDVPIIYSVIKHHGVTHI 170 (439)
Q Consensus 96 v~~s~~~~~~~~~~~~~~~----~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~ 170 (439)
-.+|++.+...+......+ +..+++++...++-... -...+++++..|+..+.++. +..+.+..++++.+++++
T Consensus 25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPH-MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHH-HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEE
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHH-HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEE
Confidence 4589998876665554433 45567888777654432 23446778888988887764 678889999999999988
Q ss_pred ec
Q 036544 171 CG 172 (439)
Q Consensus 171 ~~ 172 (439)
+.
T Consensus 104 i~ 105 (511)
T 3e7w_A 104 IH 105 (511)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 76
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.08 E-value=1.9e+02 Score=21.90 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCCCCCCHHHHHHHHHhcCCCc
Q 036544 346 SAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHY 406 (439)
Q Consensus 346 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~~ 406 (439)
..++.+.+.++|.|.+|..+..+.+ ..+.|.. .+.+++.+++.+.+...
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~~d-----~~~~v~~-------~d~~~l~~~l~~~l~~~ 130 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGHYS-----IFIKVMC-------RSIDALQHVLINKIQTI 130 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSSCS-----EEEEEEE-------SCHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHhCCcCeEEEEEEecccC-----EEEEEEE-------CCHHHHHHHHHHHhhcC
Confidence 5788999999999999998865432 4444444 46788888887766544
No 77
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=25.27 E-value=1.8e+02 Score=24.61 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=49.4
Q ss_pred EEEEcCC-ccchhhhHHHHHHH-hhcceEEEec-cCChHHHHHHHHhhCceeeechH----------HHHHHHhCCCCCC
Q 036544 121 VFLWTLP-MFHENGWSYSWGMA-AVGGTNICLR-KVDVPIIYSVIKHHGVTHICGAL----------VVLNMLSSSPSTK 187 (439)
Q Consensus 121 ~~~~~~p-~~~~~g~~~~~~~~-~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p----------~~~~~l~~~~~~~ 187 (439)
+++.+.+ -.|..|...+-..+ ..|-.++... ...++.+.+.+.+++++.+..+- .+++.|.+ .
T Consensus 126 vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~----~ 201 (258)
T 2i2x_B 126 VVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLE----N 201 (258)
T ss_dssp EEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHT----T
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHh----c
Confidence 3344443 38888877644444 4555554443 46788999999999998876432 23333322 1
Q ss_pred CCCCCeEEEEeCCCCcHHHH
Q 036544 188 PLDRPVKILTSGASPPAAVL 207 (439)
Q Consensus 188 ~~~~l~~i~~~G~~~~~~~~ 207 (439)
... -.+++||...+++..
T Consensus 202 ~~~--~~v~vGG~~~~~~~~ 219 (258)
T 2i2x_B 202 GIK--IPFACGGGAVNQDFV 219 (258)
T ss_dssp TCC--CCEEEESTTCCHHHH
T ss_pred CCC--CcEEEECccCCHHHH
Confidence 122 458888888886543
No 78
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.71 E-value=2.7e+02 Score=22.48 Aligned_cols=88 Identities=16% Similarity=0.086 Sum_probs=50.2
Q ss_pred CEEEEcCC-ccchhhhHHHHHHH-hhcceEEEecc-CChHHHHHHHHhhCceeeechH------HHHHHHhCCCCCCCCC
Q 036544 120 PVFLWTLP-MFHENGWSYSWGMA-AVGGTNICLRK-VDVPIIYSVIKHHGVTHICGAL------VVLNMLSSSPSTKPLD 190 (439)
Q Consensus 120 d~~~~~~p-~~~~~g~~~~~~~~-~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p------~~~~~l~~~~~~~~~~ 190 (439)
.+++.+.+ -.|..|...+-..+ ..|-.++.... ..++.+.+.+++++++.+..+- ..+..+.+........
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~ 169 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLR 169 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCG
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCC
Confidence 34444444 48888877654444 44555554543 5678899999999998876432 1223322222111111
Q ss_pred CCeEEEEeCCCCcHHHH
Q 036544 191 RPVKILTSGASPPAAVL 207 (439)
Q Consensus 191 ~l~~i~~~G~~~~~~~~ 207 (439)
.--.+++||...+++..
T Consensus 170 ~~~~v~vGG~~~~~~~~ 186 (210)
T 1y80_A 170 DRVKVIVGGAPLSQDFA 186 (210)
T ss_dssp GGCEEEEESTTCCHHHH
T ss_pred CCCeEEEECCCCCHHHH
Confidence 11358888888876554
No 79
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=24.47 E-value=2.2e+02 Score=26.84 Aligned_cols=77 Identities=5% Similarity=-0.183 Sum_probs=55.1
Q ss_pred EEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CChHHHHHHHHhhCceeeechH
Q 036544 96 VVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VDVPIIYSVIKHHGVTHICGAL 174 (439)
Q Consensus 96 v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p 174 (439)
-.+|++.+...+......+ ..++++..+++-+... ...+++++..|+..+.++. ...+.+..++++.++.+++..+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~~-~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAMET-GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHHH-HHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 4689999988777766554 4578888777765432 3446778888998888864 6778899999999999988754
Q ss_pred H
Q 036544 175 V 175 (439)
Q Consensus 175 ~ 175 (439)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 80
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.77 E-value=2.9e+02 Score=29.91 Aligned_cols=79 Identities=9% Similarity=-0.099 Sum_probs=57.3
Q ss_pred EEchHHHHHHHHHhhh---hcCCCCCCEEEEcCCccchhhhHHHHHHHhhcceEEEecc-CChHHHHHHHHhhCceeeec
Q 036544 97 VHCHRGLFIITVSSLI---DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRK-VDVPIIYSVIKHHGVTHICG 172 (439)
Q Consensus 97 ~~s~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 172 (439)
.+|++.+...+..... ..++.+++++..+++-+... ...+++.+..|+..+.+++ +..+.+..++++.++.++++
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~ 567 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLEL-VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLT 567 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEE
Confidence 5789888765544443 35789999999888865432 3346778888888888865 55677888899999988887
Q ss_pred hHHH
Q 036544 173 ALVV 176 (439)
Q Consensus 173 ~p~~ 176 (439)
....
T Consensus 568 ~~~~ 571 (1304)
T 2vsq_A 568 HQEM 571 (1304)
T ss_dssp CSTT
T ss_pred Ccch
Confidence 6543
No 81
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=20.92 E-value=1.4e+02 Score=20.56 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=35.5
Q ss_pred CceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcC-cCcceEEEEcccCCCCCceeEEEEEec
Q 036544 311 DWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMN-PAINEVALVAQRDKFWGKRPCAFVSLK 383 (439)
Q Consensus 311 g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~ 383 (439)
.|+.-||.+.+. +.|.||. ..++..-..+|.+. ..+.+.+.+-......|.....++.+.
T Consensus 25 ~FL~~GdKVKvt----i~fRGRE---------~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m~l~Pk 85 (89)
T 1i96_V 25 RFLQEGHKVKVT----IMFRGRE---------VAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPV 85 (89)
T ss_pred HHHHCCCEEEEE----EEECCcc---------ccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEEEEEeC
Confidence 478889999984 7787773 23444444455443 334555555544444566666666554
Done!