BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036549
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
 pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
          Length = 397

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 28  WLFKAYYGHRMFMGYCRV--ACELLYLILFLIAEKQSGSLVDVVVSAVQQGSPLSFLVEL 85
           WLF  + G   F+  CR   A   L +++ L + +++G               L  L + 
Sbjct: 293 WLFNEHGGEADFVNQCRRFQAERGLDVLVLLTSWRKAGD----------SHRELVILGDS 342

Query: 86  SLFRWAIKQTINVIQLTLYNGIMDPKIGQFE 116
           ++ R  I++  + +QL L+ G +D  +  F+
Sbjct: 343 NVVRELIERVSDKLQLQLFGGNLDGGVAMFK 373


>pdb|4H7N|A Chain A, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis.
 pdb|4H7N|B Chain B, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis.
 pdb|4H7N|C Chain C, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis.
 pdb|4H7N|D Chain D, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis
          Length = 474

 Score = 25.8 bits (55), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 18/22 (81%)

Query: 56  LIAEKQSGSLVDVVVSAVQQGS 77
           +IAEKQ+G + D ++ AV++G+
Sbjct: 308 IIAEKQAGIINDHILDAVEKGA 329


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,341,679
Number of Sequences: 62578
Number of extensions: 108868
Number of successful extensions: 230
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)