Query 036549
Match_columns 120
No_of_seqs 103 out of 224
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lm0_A AF4/FMR2 family member 13.6 95 0.0032 21.8 2.0 16 92-117 80-95 (125)
2 1cn3_F Fragment of coat protei 10.1 75 0.0026 16.6 0.4 11 15-25 8-18 (29)
3 4gxh_A Pyrrolidone-carboxylate 9.9 1.5E+02 0.0053 21.9 2.2 15 45-59 143-157 (216)
4 1v33_A DNA primase small subun 9.6 53 0.0018 26.7 -0.5 35 2-36 3-37 (366)
5 1h67_A Calponin alpha; cytoske 9.3 2.3E+02 0.0079 18.3 2.7 25 90-114 54-78 (108)
6 1o7d_B Lysosomal alpha-mannosi 8.8 1E+02 0.0035 19.8 0.8 18 31-48 43-60 (84)
7 1nei_A Hypothetical protein YO 8.4 1.4E+02 0.0048 18.4 1.2 18 89-106 36-53 (60)
8 1hgv_A PH75 inovirus major coa 8.3 1.2E+02 0.0042 17.4 0.9 17 90-106 7-23 (46)
9 3arc_I Photosystem II reaction 7.2 2.7E+02 0.0094 15.5 2.0 15 48-62 12-26 (38)
10 1x10_A Pyrrolidone-carboxylate 6.9 2.5E+02 0.0085 20.5 2.2 14 45-58 141-154 (208)
No 1
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=13.63 E-value=95 Score=21.81 Aligned_cols=16 Identities=38% Similarity=0.800 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhhhcccCCceee
Q 036549 92 IKQTINVIQLTLYNGIMDPKIGQFEI 117 (120)
Q Consensus 92 ~Kq~iNvvQL~~A~~~~d~~~~~~~~ 117 (120)
++|++|+| .++|+|||
T Consensus 80 lq~iv~li----------~~tG~~~i 95 (125)
T 2lm0_A 80 LQQIVNLI----------EETGHFHI 95 (125)
T ss_dssp HHHHHHHH----------HTSCCEEE
T ss_pred HHHHHHHH----------HhcCceee
Confidence 56677765 35677765
No 2
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=10.13 E-value=75 Score=16.56 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=8.4
Q ss_pred CCCCCcCcCCC
Q 036549 15 GKTSHKDVKDS 25 (120)
Q Consensus 15 G~~SHK~v~~~ 25 (120)
|..||..|.++
T Consensus 8 gaashqrvtpd 18 (29)
T 1cn3_F 8 GAASHQRVTPD 18 (29)
T ss_dssp TTTCCCCCEEG
T ss_pred ccccccccCch
Confidence 56899988853
No 3
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=9.89 E-value=1.5e+02 Score=21.90 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 036549 45 VACELLYLILFLIAE 59 (120)
Q Consensus 45 ~gnE~Fyv~LYl~~f 59 (120)
+||++||-+||++.-
T Consensus 143 lCN~i~Y~sL~~~~~ 157 (216)
T 4gxh_A 143 VCNHVMYGLLHYLAQ 157 (216)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999998753
No 4
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=9.60 E-value=53 Score=26.72 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=13.1
Q ss_pred CceeheeheecccCCCCCcCcCCCcccchhccccC
Q 036549 2 PSTLDLCCSTFLRGKTSHKDVKDSTNWLFKAYYGH 36 (120)
Q Consensus 2 ~SHw~hmyssl~~G~~SHK~v~~~~~~iLrlYY~~ 36 (120)
+||--|-+||-+..+.+|-..++...-.||.||.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YY~r 37 (366)
T 1v33_A 3 SSHHHHHHSSGLVPRGSHMLLREVTREERKNFYTN 37 (366)
T ss_dssp ------------------CCSCCCCHHHHHHHHHH
T ss_pred CcccccccccccccccceeeeccCCHHHHHHHHHh
Confidence 46777778887777778887777666778999973
No 5
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=9.31 E-value=2.3e+02 Score=18.31 Aligned_cols=25 Identities=8% Similarity=-0.199 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCc
Q 036549 90 WAIKQTINVIQLTLYNGIMDPKIGQ 114 (120)
Q Consensus 90 ~~~Kq~iNvvQL~~A~~~~d~~~~~ 114 (120)
..+|+.=|+-++.+|++.+-..+.+
T Consensus 54 ~~f~~~eNI~~Fl~a~~~~Gv~~~~ 78 (108)
T 1h67_A 54 QNWHKLENIGNFLRAIKHYGVKPHD 78 (108)
T ss_dssp SSHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred cchHHHHHHHHHHHHHHHcCCCccc
Confidence 3479999999999999955544443
No 6
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1
Probab=8.77 E-value=1e+02 Score=19.79 Aligned_cols=18 Identities=11% Similarity=0.144 Sum_probs=11.9
Q ss_pred hccccCchhHHHHHHHHH
Q 036549 31 KAYYGHRMFMGYCRVACE 48 (120)
Q Consensus 31 rlYY~~r~~Lf~~C~gnE 48 (120)
.=|||+||.+=-+.=-.|
T Consensus 43 tGyyTSRp~lK~~~R~~~ 60 (84)
T 1o7d_B 43 TGYFSSRPALKRYERLSY 60 (84)
T ss_dssp CGGGTSCHHHHHHHHHHH
T ss_pred eeeeeCCHHHHHHHHHHH
Confidence 458999998865543333
No 7
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=8.45 E-value=1.4e+02 Score=18.35 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 036549 89 RWAIKQTINVIQLTLYNG 106 (120)
Q Consensus 89 i~~~Kq~iNvvQL~~A~~ 106 (120)
.=++|-+||+|-.+++-.
T Consensus 36 a~~vK~LvniVrgYd~de 53 (60)
T 1nei_A 36 AEVIKDLVNTVRSYDTEN 53 (60)
T ss_dssp HHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhcccccc
Confidence 357899999998887654
No 8
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=8.26 E-value=1.2e+02 Score=17.36 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 036549 90 WAIKQTINVIQLTLYNG 106 (120)
Q Consensus 90 ~~~Kq~iNvvQL~~A~~ 106 (120)
-+.-|++|.+|++.|+.
T Consensus 7 eia~~v~~yi~~iaaag 23 (46)
T 1hgv_A 7 EVASQVTNYIQAIAAAG 23 (46)
T ss_dssp HHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 45668888888888876
No 9
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=7.22 E-value=2.7e+02 Score=15.53 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhc
Q 036549 48 ELLYLILFLIAEKQS 62 (120)
Q Consensus 48 E~Fyv~LYl~~f~~~ 62 (120)
-.||+.|++.+|-+.
T Consensus 12 V~ffvsLFiFGfLsn 26 (38)
T 3arc_I 12 VTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccCC
Confidence 468999999998663
No 10
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=6.94 E-value=2.5e+02 Score=20.54 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 036549 45 VACELLYLILFLIA 58 (120)
Q Consensus 45 ~gnE~Fyv~LYl~~ 58 (120)
+||+++|-+|+...
T Consensus 141 lCN~i~Y~sL~~~~ 154 (208)
T 1x10_A 141 LSNYVMYLSLHHSA 154 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 57999999999985
Done!