Query 036549
Match_columns 120
No_of_seqs 103 out of 224
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 04:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036549.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036549hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gpma2 c.23.16.1 (A:3-207) GM 12.6 53 0.0039 21.3 2.2 25 28-53 69-93 (205)
2 d2axti1 f.23.37.1 (I:1-35) Pho 12.0 73 0.0053 16.2 2.2 15 48-62 12-26 (35)
3 d1w7ca3 d.17.2.1 (A:170-315) L 11.5 25 0.0018 23.7 0.1 21 18-38 85-105 (146)
4 d2jdig1 c.49.2.1 (G:1-272) ATP 11.0 64 0.0047 22.0 2.3 17 90-106 14-30 (272)
5 d2pbea1 a.160.1.5 (A:138-282) 8.0 1.1E+02 0.0081 19.8 2.5 18 41-59 15-32 (145)
6 d1a2za_ c.56.4.1 (A:) Pyrrolid 7.5 1E+02 0.0076 21.0 2.2 15 45-59 142-156 (220)
7 d1h99a1 a.142.1.1 (A:54-168) T 5.8 1.4E+02 0.01 17.3 2.0 13 47-59 98-110 (115)
8 d1p9ha_ b.81.3.1 (A:) Adhesin 5.3 68 0.005 21.2 0.1 8 97-104 179-186 (189)
9 d1auga_ c.56.4.1 (A:) Pyrrolid 4.9 1.8E+02 0.013 19.3 2.2 15 45-59 143-157 (210)
10 d1wl8a1 c.23.16.1 (A:1-188) GM 4.1 1.2E+02 0.009 18.9 0.8 42 12-54 48-89 (188)
No 1
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}
Probab=12.57 E-value=53 Score=21.34 Aligned_cols=25 Identities=4% Similarity=-0.104 Sum_probs=18.8
Q ss_pred cchhccccCchhHHHHHHHHHHHHHH
Q 036549 28 WLFKAYYGHRMFMGYCRVACELLYLI 53 (120)
Q Consensus 28 ~iLrlYY~~r~~Lf~~C~gnE~Fyv~ 53 (120)
.+.+.+-.++|+|++ |.|..+...+
T Consensus 69 ~~~~~~~~~~PiLGI-ClG~Qlla~~ 93 (205)
T d1gpma2 69 APQYVFEAGVPVFGV-CYGMQTMAMQ 93 (205)
T ss_dssp CCGGGGTSSSCEEEE-THHHHHHHHH
T ss_pred HHHHHHhCCCCEEEe-ccchhhhhhh
Confidence 455667778999999 5788887653
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.04 E-value=73 Score=16.24 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhc
Q 036549 48 ELLYLILFLIAEKQS 62 (120)
Q Consensus 48 E~Fyv~LYl~~f~~~ 62 (120)
-.||++|++.+|-+.
T Consensus 12 V~fFv~lFiFGFLSn 26 (35)
T d2axti1 12 VTFFVLLFVFGFLSG 26 (35)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccC
Confidence 468999999999663
No 3
>d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
Probab=11.49 E-value=25 Score=23.65 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=17.9
Q ss_pred CCcCcCCCcccchhccccCch
Q 036549 18 SHKDVKDSTNWLFKAYYGHRM 38 (120)
Q Consensus 18 SHK~v~~~~~~iLrlYY~~r~ 38 (120)
-|...|.+++.+.++||+++-
T Consensus 85 D~~g~Dps~W~V~~v~Yng~~ 105 (146)
T d1w7ca3 85 DMTGRDVSQWKMLEYIYNNKV 105 (146)
T ss_dssp ECCSSCGGGCEEEEEEETTEE
T ss_pred ecCCCChHHeEEEEEEECCEE
Confidence 477788899999999999773
No 4
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.03 E-value=64 Score=21.98 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 036549 90 WAIKQTINVIQLTLYNG 106 (120)
Q Consensus 90 ~~~Kq~iNvvQL~~A~~ 106 (120)
=-++|++|.+|++.|+|
T Consensus 14 ~~t~kITkAMkmVAasK 30 (272)
T d2jdig1 14 KNIQKITKSMKMVAAAK 30 (272)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999999998
No 5
>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=7.99 E-value=1.1e+02 Score=19.82 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 036549 41 GYCRVACELLYLILFLIAE 59 (120)
Q Consensus 41 f~~C~gnE~Fyv~LYl~~f 59 (120)
|--| +||.++++.|+..-
T Consensus 15 F~~c-cNEFww~s~~VaKg 32 (145)
T d2pbea1 15 FDDC-CNEFWMVSTYVVKG 32 (145)
T ss_dssp HHHH-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 3445 89999999998653
No 6
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=7.53 E-value=1e+02 Score=21.01 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 036549 45 VACELLYLILFLIAE 59 (120)
Q Consensus 45 ~gnE~Fyv~LYl~~f 59 (120)
+|||++|-.|+...-
T Consensus 142 lCN~~~Y~sl~~~~~ 156 (220)
T d1a2za_ 142 LCNYVMFKTLHFSKI 156 (220)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 579999999998754
No 7
>d1h99a1 a.142.1.1 (A:54-168) Transcriptional antiterminator LicT {Bacillus subtilis [TaxId: 1423]}
Probab=5.76 E-value=1.4e+02 Score=17.28 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q 036549 47 CELLYLILFLIAE 59 (120)
Q Consensus 47 nE~Fyv~LYl~~f 59 (120)
.|..|+++|+.+-
T Consensus 98 ~Ei~yi~lhi~~a 110 (115)
T d1h99a1 98 DEAGFIALHIVNA 110 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6889999988753
No 8
>d1p9ha_ b.81.3.1 (A:) Adhesin YadA, collagen-binding domain {Yersinia enterocolitica [TaxId: 630]}
Probab=5.28 E-value=68 Score=21.15 Aligned_cols=8 Identities=50% Similarity=0.351 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 036549 97 NVIQLTLY 104 (120)
Q Consensus 97 NvvQL~~A 104 (120)
|+-||.++
T Consensus 179 n~~QLk~~ 186 (189)
T d1p9ha_ 179 NVAQLKKE 186 (189)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 34444433
No 9
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=4.88 E-value=1.8e+02 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHh
Q 036549 45 VACELLYLILFLIAE 59 (120)
Q Consensus 45 ~gnE~Fyv~LYl~~f 59 (120)
+|||++|-+|.+..-
T Consensus 143 lCN~~yY~sL~~~~~ 157 (210)
T d1auga_ 143 VCNHLFYGLMDEISR 157 (210)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHh
Confidence 479999999987643
No 10
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.11 E-value=1.2e+02 Score=18.95 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred cccCCCCCcCcCCCcccchhccccCchhHHHHHHHHHHHHHHH
Q 036549 12 FLRGKTSHKDVKDSTNWLFKAYYGHRMFMGYCRVACELLYLIL 54 (120)
Q Consensus 12 l~~G~~SHK~v~~~~~~iLrlYY~~r~~Lf~~C~gnE~Fyv~L 54 (120)
.++|...-...++....+.+..-.++|+|++ |.|..+.-..+
T Consensus 48 ilsgg~~~~~~~~~~~~i~~~~~~~~PiLGI-ClG~Q~l~~~~ 89 (188)
T d1wl8a1 48 IFSGGPSLENTGNCEKVLEHYDEFNVPILGI-CLGHQLIAKFF 89 (188)
T ss_dssp EECCCSCTTCCTTHHHHHHTGGGTCSCEEEE-THHHHHHHHHH
T ss_pred eeccCcccccccccccccccccccccceeeh-hhhhhhhhhhc
Done!