BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036551
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407
KR++ + NR +A RSR +++ L ++A+ L N L+SEVT +RNE QL
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407
+KR+ R++ N+ +A +SR R++ D L D L++E ++L++E+ + E E+L
Sbjct: 1 MKRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407
KR+ R++ N+ +A +SR R++ D L D L++E ++L++E+ + E E+L
Sbjct: 1 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 55
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQ 406
KR+ R NRE+AR SR +K+ L R L+ +N +L E+ +++ Y
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSH 54
>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 352 LKRQRRKQSNRESARRSRLRKQAE-------CDELAQRADALKEENASLRSEVTRIRNEY 404
+K+ ++ + N+ +A R R +K+AE C EL ++ +ALKE SL E+ +++
Sbjct: 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Query: 405 EQL 407
E++
Sbjct: 61 EEV 63
>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
Length = 107
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 351 ELKRQRRKQSNR---ESARRSRLRKQAECD----ELAQRADALKEENASLRSEVTRIRNE 403
+LK++RR NR S R R+ ++ E + EL Q + L ENAS + E+ +R++
Sbjct: 35 QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASXKLELDALRSK 94
Query: 404 YEQL 407
YE L
Sbjct: 95 YEAL 98
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 353 KRQRRKQSNRESARRSRLRK-------QAECDELAQRADALKEENASLRSEVTRI 400
KR+ R++ N+ +A + R R+ QAE D+L AL+ E A+L E ++
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|4EOT|A Chain A, Crystal Structure Of The Mafa Homodimer Bound To The
Consensus Mare
pdb|4EOT|B Chain B, Crystal Structure Of The Mafa Homodimer Bound To The
Consensus Mare
Length = 95
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAEN 411
LK++RR NR A+ R ++ Q+ L+ E L+S+V +++ E +L E
Sbjct: 32 LKQKRRTLKNRGYAQSCRFKR-------VQQRHILESEKCQLQSQVEQLKLEVGRLAKER 84
Query: 412 ASLKER 417
KE+
Sbjct: 85 DLYKEK 90
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 14/60 (23%)
Query: 352 LKRQRRKQSNRESARRSRLRK--------------QAECDELAQRADALKEENASLRSEV 397
+K +R++ NR +A +SR RK +A+ ELA A+ L+E+ A L+ +V
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 60
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 14/59 (23%)
Query: 353 KRQRRKQSNRESARRSRLRK--------------QAECDELAQRADALKEENASLRSEV 397
K +R++ NR +A +SR RK +A+ ELA A+ L+E+ A L+ +V
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59
>pdb|1GD2|E Chain E, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|F Chain F, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|G Chain G, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|H Chain H, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|I Chain I, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
pdb|1GD2|J Chain J, Crystal Structure Of Bzip Transcription Factor Pap1 Bound
To Dna
Length = 70
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415
+RK NR + R R RK+ L + LKE ++S E ++R + QL E LK
Sbjct: 11 KRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70
>pdb|2JEE|A Chain A, Xray Structure Of E. Coli Yiiu
pdb|2JEE|B Chain B, Xray Structure Of E. Coli Yiiu
pdb|2JEE|C Chain C, Xray Structure Of E. Coli Yiiu
pdb|2JEE|D Chain D, Xray Structure Of E. Coli Yiiu
Length = 81
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417
L + LKE+N SL EV +++ E+L EN LKE+
Sbjct: 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63
>pdb|1DEB|A Chain A, Crystal Structure Of The N-Terminal Coiled Coil Domain
From Apc
pdb|1DEB|B Chain B, Crystal Structure Of The N-Terminal Coiled Coil Domain
From Apc
Length = 54
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421
A D+L ++ +ALK EN++LR E+ N +L E +++KE L ++
Sbjct: 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50
>pdb|3N2E|A Chain A, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|B Chain B, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|C Chain C, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
Length = 168
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 329 GGIVAGGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKE 388
GGIV + + + +L+ + E +R Q +E A+R L + EL ++ AL E
Sbjct: 80 GGIVMHENLKGLGTTFYLKMDFETLIKRLNQ--KERAKRPLLNNLTQAKELFEKRQALYE 137
Query: 389 ENASL 393
+NAS
Sbjct: 138 KNASF 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,373,611
Number of Sequences: 62578
Number of extensions: 482480
Number of successful extensions: 884
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 27
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)