Query 036551
Match_columns 453
No_of_seqs 211 out of 969
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 3.2E-62 6.9E-67 456.1 13.5 161 73-239 22-189 (189)
2 PF00170 bZIP_1: bZIP transcri 99.4 5.2E-13 1.1E-17 104.8 9.3 63 349-411 1-63 (64)
3 smart00338 BRLZ basic region l 99.4 3.2E-12 6.9E-17 100.4 9.0 62 351-412 3-64 (65)
4 KOG3584 cAMP response element 99.3 4.2E-12 9E-17 126.4 9.3 64 342-405 280-343 (348)
5 KOG4005 Transcription factor X 99.2 1E-10 2.2E-15 114.2 9.3 73 351-423 67-139 (292)
6 KOG4343 bZIP transcription fac 99.2 5.8E-11 1.3E-15 125.7 7.9 70 347-416 275-344 (655)
7 KOG0709 CREB/ATF family transc 99.1 7.9E-11 1.7E-15 123.1 7.3 77 347-423 245-321 (472)
8 PF07716 bZIP_2: Basic region 99.1 1E-09 2.3E-14 84.0 8.8 51 352-403 4-54 (54)
9 KOG0837 Transcriptional activa 98.3 2.3E-06 5E-11 84.9 9.2 62 346-407 199-260 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.3 1.6E-08 3.5E-13 85.0 -6.4 67 348-414 25-91 (92)
11 KOG4571 Activating transcripti 97.9 7.2E-05 1.6E-09 75.4 10.1 52 356-407 230-281 (294)
12 KOG3119 Basic region leucine z 97.9 4.7E-05 1E-09 75.5 8.5 55 355-409 196-250 (269)
13 KOG4196 bZIP transcription fac 97.2 0.0025 5.4E-08 58.1 9.9 65 351-422 51-115 (135)
14 KOG3863 bZIP transcription fac 96.4 0.0065 1.4E-07 66.7 6.6 63 353-415 490-552 (604)
15 PF06156 DUF972: Protein of un 96.3 0.016 3.5E-07 50.9 7.3 50 374-423 8-57 (107)
16 PRK10884 SH3 domain-containing 96.1 0.072 1.6E-06 51.6 11.4 49 371-419 122-170 (206)
17 PRK13169 DNA replication intia 95.9 0.034 7.4E-07 49.3 7.4 50 374-423 8-57 (110)
18 PF06005 DUF904: Protein of un 95.5 0.067 1.4E-06 44.2 7.3 28 376-403 6-33 (72)
19 PF08614 ATG16: Autophagy prot 95.4 0.11 2.4E-06 49.0 9.5 75 353-427 116-190 (194)
20 PF10224 DUF2205: Predicted co 95.0 0.1 2.2E-06 44.1 7.2 50 377-426 19-68 (80)
21 COG3074 Uncharacterized protei 95.0 0.09 2E-06 43.9 6.5 43 375-417 19-61 (79)
22 PRK13729 conjugal transfer pil 94.9 0.11 2.4E-06 56.0 9.0 50 374-423 76-125 (475)
23 PRK10884 SH3 domain-containing 94.8 0.32 6.8E-06 47.2 10.9 52 372-423 116-167 (206)
24 TIGR02449 conserved hypothetic 94.7 0.13 2.7E-06 42.1 6.7 47 375-421 8-54 (65)
25 TIGR02894 DNA_bind_RsfA transc 94.7 0.11 2.3E-06 49.2 7.1 40 383-422 99-138 (161)
26 TIGR02449 conserved hypothetic 94.7 0.15 3.3E-06 41.6 7.1 48 376-423 2-49 (65)
27 PF06005 DUF904: Protein of un 94.6 0.17 3.8E-06 41.7 7.3 48 374-421 18-65 (72)
28 COG4467 Regulator of replicati 94.3 0.18 3.9E-06 45.1 7.1 47 374-420 8-54 (114)
29 KOG1414 Transcriptional activa 93.8 0.0025 5.4E-08 66.4 -6.1 61 348-408 149-213 (395)
30 PRK15422 septal ring assembly 93.7 0.26 5.7E-06 41.7 6.8 45 374-418 18-62 (79)
31 PF13747 DUF4164: Domain of un 93.5 1.3 2.8E-05 37.8 10.7 73 349-421 7-79 (89)
32 PF04102 SlyX: SlyX; InterPro 93.4 0.4 8.8E-06 38.8 7.2 52 373-424 3-54 (69)
33 PF02183 HALZ: Homeobox associ 93.3 0.15 3.3E-06 38.7 4.3 36 386-421 3-38 (45)
34 TIGR00219 mreC rod shape-deter 93.3 0.19 4E-06 50.6 6.3 41 382-422 67-111 (283)
35 KOG4005 Transcription factor X 93.3 0.65 1.4E-05 46.7 9.8 53 373-425 96-148 (292)
36 COG4026 Uncharacterized protei 93.1 0.5 1.1E-05 47.3 8.8 53 372-424 140-192 (290)
37 KOG1962 B-cell receptor-associ 93.1 0.61 1.3E-05 45.9 9.3 52 370-421 161-212 (216)
38 COG3074 Uncharacterized protei 92.7 0.46 9.9E-06 39.8 6.6 53 372-424 23-75 (79)
39 PF02183 HALZ: Homeobox associ 92.4 0.54 1.2E-05 35.7 6.3 42 378-419 2-43 (45)
40 PRK13922 rod shape-determining 91.8 0.68 1.5E-05 45.5 7.9 40 383-422 71-113 (276)
41 PRK02119 hypothetical protein; 91.7 1.1 2.4E-05 37.0 7.8 51 373-423 8-58 (73)
42 PF10186 Atg14: UV radiation r 91.7 2.2 4.8E-05 41.1 11.2 54 366-419 55-108 (302)
43 PRK04325 hypothetical protein; 91.7 1.1 2.3E-05 37.1 7.8 50 374-423 9-58 (74)
44 PRK02793 phi X174 lysis protei 91.7 1.1 2.3E-05 37.0 7.7 51 373-423 7-57 (72)
45 PRK15422 septal ring assembly 91.7 0.61 1.3E-05 39.6 6.3 51 373-423 24-74 (79)
46 smart00338 BRLZ basic region l 91.6 0.74 1.6E-05 36.2 6.5 40 380-419 25-64 (65)
47 PRK00736 hypothetical protein; 91.6 1.2 2.5E-05 36.3 7.7 50 374-423 5-54 (68)
48 PF10473 CENP-F_leu_zip: Leuci 91.5 2.6 5.7E-05 39.0 10.9 69 355-423 33-101 (140)
49 PRK00295 hypothetical protein; 91.5 1.1 2.4E-05 36.4 7.5 49 374-422 5-53 (68)
50 PRK04406 hypothetical protein; 91.2 1.5 3.3E-05 36.4 8.3 50 374-423 11-60 (75)
51 PRK00888 ftsB cell division pr 91.1 1 2.2E-05 39.4 7.4 56 370-428 30-85 (105)
52 PF11559 ADIP: Afadin- and alp 90.9 3.4 7.5E-05 37.2 10.9 61 356-416 48-108 (151)
53 PF07106 TBPIP: Tat binding pr 90.8 0.92 2E-05 41.7 7.3 53 372-424 84-138 (169)
54 PF14197 Cep57_CLD_2: Centroso 90.8 1.3 2.9E-05 36.3 7.4 48 375-422 13-67 (69)
55 PRK11637 AmiB activator; Provi 90.6 2.5 5.4E-05 44.3 11.2 56 366-421 67-122 (428)
56 PF09726 Macoilin: Transmembra 90.6 1.8 3.9E-05 48.9 10.7 43 375-417 539-581 (697)
57 PF06156 DUF972: Protein of un 90.3 0.81 1.8E-05 40.4 6.1 42 381-422 8-49 (107)
58 PF00170 bZIP_1: bZIP transcri 89.5 1.6 3.6E-05 34.2 6.7 36 382-417 27-62 (64)
59 KOG3335 Predicted coiled-coil 89.5 0.47 1E-05 45.6 4.3 53 352-410 90-142 (181)
60 TIGR03752 conj_TIGR03752 integ 89.3 0.8 1.7E-05 49.6 6.4 54 366-421 88-142 (472)
61 PF11932 DUF3450: Protein of u 89.1 5.1 0.00011 39.1 11.3 52 366-417 48-99 (251)
62 PF04880 NUDE_C: NUDE protein, 89.0 0.63 1.4E-05 44.1 4.8 43 376-418 2-47 (166)
63 KOG1029 Endocytic adaptor prot 88.9 2.6 5.6E-05 48.5 10.1 29 396-424 431-459 (1118)
64 PF11932 DUF3450: Protein of u 88.9 5.2 0.00011 39.1 11.2 49 374-422 49-97 (251)
65 PRK11637 AmiB activator; Provi 88.8 3.6 7.8E-05 43.1 10.7 49 372-420 80-128 (428)
66 PRK00846 hypothetical protein; 88.8 2.5 5.5E-05 35.6 7.7 51 373-423 12-62 (77)
67 PF08172 CASP_C: CASP C termin 88.5 1.5 3.2E-05 43.8 7.2 39 377-422 96-134 (248)
68 PF11559 ADIP: Afadin- and alp 88.0 3.7 8E-05 37.1 8.9 78 355-432 61-138 (151)
69 TIGR02894 DNA_bind_RsfA transc 87.7 5.5 0.00012 37.9 10.0 46 370-415 107-152 (161)
70 PF09789 DUF2353: Uncharacteri 87.4 5.4 0.00012 41.5 10.7 58 375-432 66-123 (319)
71 COG2433 Uncharacterized conser 87.4 1.9 4.1E-05 48.2 7.7 45 375-419 423-467 (652)
72 KOG4196 bZIP transcription fac 87.0 3.7 7.9E-05 38.0 8.2 33 393-425 79-111 (135)
73 COG4026 Uncharacterized protei 86.8 2.2 4.8E-05 42.8 7.2 43 380-422 162-204 (290)
74 PF12718 Tropomyosin_1: Tropom 86.8 2.5 5.4E-05 38.8 7.1 47 375-421 15-61 (143)
75 PF12808 Mto2_bdg: Micro-tubul 86.7 1.3 2.8E-05 34.9 4.4 22 400-421 27-48 (52)
76 PF14662 CCDC155: Coiled-coil 86.5 7.4 0.00016 38.0 10.4 43 377-419 98-140 (193)
77 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.4 15 0.00033 32.9 11.7 34 388-421 98-131 (132)
78 PRK13169 DNA replication intia 86.2 2.1 4.6E-05 38.2 6.1 34 374-407 22-55 (110)
79 PF07888 CALCOCO1: Calcium bin 86.0 6.9 0.00015 43.4 11.1 11 377-387 188-198 (546)
80 PF05103 DivIVA: DivIVA protei 86.0 0.41 8.9E-06 41.5 1.6 50 374-423 25-74 (131)
81 PRK12704 phosphodiesterase; Pr 85.8 7 0.00015 42.8 11.0 27 396-422 125-151 (520)
82 PF01166 TSC22: TSC-22/dip/bun 85.6 1.2 2.7E-05 35.9 3.9 31 389-419 15-45 (59)
83 COG4942 Membrane-bound metallo 85.3 5.2 0.00011 43.0 9.5 73 353-425 38-110 (420)
84 KOG3119 Basic region leucine z 85.2 4.9 0.00011 40.4 8.9 50 358-407 206-255 (269)
85 PF09738 DUF2051: Double stran 85.2 3.1 6.7E-05 42.8 7.6 73 349-421 88-166 (302)
86 PRK00888 ftsB cell division pr 85.2 2.8 6.1E-05 36.7 6.3 34 376-409 29-62 (105)
87 PF08172 CASP_C: CASP C termin 85.1 3.4 7.4E-05 41.2 7.7 47 356-403 90-136 (248)
88 PF04728 LPP: Lipoprotein leuc 85.1 6.7 0.00014 31.5 7.7 47 374-420 3-49 (56)
89 PF12709 Kinetocho_Slk19: Cent 85.0 4.8 0.0001 34.8 7.4 45 372-416 40-84 (87)
90 PF05700 BCAS2: Breast carcino 84.9 9.4 0.0002 37.1 10.4 55 368-423 163-217 (221)
91 PF10186 Atg14: UV radiation r 84.6 11 0.00025 36.3 10.9 31 371-401 67-97 (302)
92 PF04977 DivIC: Septum formati 84.6 5.8 0.00013 31.3 7.4 30 371-400 21-50 (80)
93 PF04977 DivIC: Septum formati 84.5 2 4.3E-05 34.0 4.7 31 377-407 20-50 (80)
94 PF04111 APG6: Autophagy prote 84.5 13 0.00029 38.1 11.7 71 353-423 64-134 (314)
95 PF10669 Phage_Gp23: Protein g 84.4 11 0.00023 33.8 9.5 67 345-415 47-116 (121)
96 PHA02562 46 endonuclease subun 84.3 7.4 0.00016 41.4 10.2 34 378-411 362-395 (562)
97 PF05377 FlaC_arch: Flagella a 84.2 4.2 9.1E-05 32.5 6.2 39 376-414 2-40 (55)
98 PF15294 Leu_zip: Leucine zipp 84.1 2.2 4.7E-05 43.6 5.8 45 379-423 130-174 (278)
99 TIGR03752 conj_TIGR03752 integ 84.0 0.81 1.7E-05 49.6 3.0 19 377-395 76-94 (472)
100 PF13851 GAS: Growth-arrest sp 84.0 19 0.00041 34.8 11.9 60 349-408 68-127 (201)
101 COG1579 Zn-ribbon protein, pos 83.9 8.4 0.00018 38.6 9.8 52 371-422 86-137 (239)
102 KOG0982 Centrosomal protein Nu 83.9 6.5 0.00014 42.6 9.5 50 374-423 297-346 (502)
103 TIGR02209 ftsL_broad cell divi 83.9 2.4 5.1E-05 34.5 5.0 27 374-400 31-57 (85)
104 PF13815 Dzip-like_N: Iguana/D 83.9 3.9 8.5E-05 36.0 6.7 41 378-418 77-117 (118)
105 KOG1029 Endocytic adaptor prot 83.8 3.9 8.4E-05 47.2 8.1 29 403-431 431-459 (1118)
106 PRK00106 hypothetical protein; 83.6 9.9 0.00021 42.0 11.0 16 396-411 140-155 (535)
107 PF09744 Jnk-SapK_ap_N: JNK_SA 83.5 7 0.00015 36.8 8.6 35 384-418 85-119 (158)
108 KOG1962 B-cell receptor-associ 83.1 7.5 0.00016 38.5 8.9 48 379-426 149-196 (216)
109 KOG1103 Predicted coiled-coil 82.8 5.2 0.00011 42.6 8.1 61 363-423 227-287 (561)
110 PRK10803 tol-pal system protei 82.7 8.8 0.00019 38.3 9.4 45 376-420 56-100 (263)
111 KOG3650 Predicted coiled-coil 82.5 4.3 9.3E-05 36.3 6.3 29 393-421 75-103 (120)
112 PF07407 Seadorna_VP6: Seadorn 82.5 2 4.4E-05 45.1 5.0 23 385-407 36-58 (420)
113 KOG0946 ER-Golgi vesicle-tethe 82.3 13 0.00028 43.3 11.4 67 357-423 654-720 (970)
114 PF10226 DUF2216: Uncharacteri 82.2 12 0.00026 36.6 9.7 54 349-402 19-76 (195)
115 PF12711 Kinesin-relat_1: Kine 82.2 4.5 9.9E-05 34.8 6.2 37 386-422 22-64 (86)
116 PF10211 Ax_dynein_light: Axon 82.1 2.6 5.6E-05 40.2 5.3 47 376-422 122-168 (189)
117 PF07888 CALCOCO1: Calcium bin 82.0 15 0.00031 41.0 11.5 41 360-400 157-197 (546)
118 PF05266 DUF724: Protein of un 82.0 18 0.00039 34.9 10.9 46 374-419 131-176 (190)
119 PF09744 Jnk-SapK_ap_N: JNK_SA 81.7 16 0.00036 34.3 10.3 44 378-421 93-136 (158)
120 KOG1414 Transcriptional activa 81.7 0.22 4.8E-06 52.2 -2.3 56 354-415 286-341 (395)
121 PF01166 TSC22: TSC-22/dip/bun 81.6 1.6 3.4E-05 35.3 3.0 30 374-403 14-43 (59)
122 PF06785 UPF0242: Uncharacteri 81.6 12 0.00025 39.7 10.0 52 370-421 123-174 (401)
123 PF15058 Speriolin_N: Sperioli 81.4 3.2 7E-05 40.6 5.6 40 376-423 7-46 (200)
124 PF04156 IncA: IncA protein; 81.2 28 0.00061 32.2 11.6 48 367-414 123-170 (191)
125 PF05266 DUF724: Protein of un 81.1 15 0.00033 35.4 10.1 62 353-414 89-150 (190)
126 PRK02119 hypothetical protein; 81.0 6.6 0.00014 32.5 6.6 49 375-423 3-51 (73)
127 PF08826 DMPK_coil: DMPK coile 80.9 16 0.00034 29.7 8.5 32 377-408 28-59 (61)
128 PF05529 Bap31: B-cell recepto 80.9 8.7 0.00019 36.0 8.3 37 386-422 152-188 (192)
129 PF10805 DUF2730: Protein of u 80.5 6.2 0.00013 34.4 6.6 42 374-415 49-92 (106)
130 PF05529 Bap31: B-cell recepto 80.4 10 0.00023 35.5 8.6 37 374-410 154-190 (192)
131 KOG2391 Vacuolar sorting prote 80.2 19 0.00041 38.1 11.0 64 348-420 215-278 (365)
132 PF09726 Macoilin: Transmembra 80.2 14 0.00031 42.0 11.0 24 348-371 423-447 (697)
133 KOG0977 Nuclear envelope prote 79.9 9.8 0.00021 42.3 9.3 62 363-424 130-191 (546)
134 PRK04406 hypothetical protein; 79.7 8.1 0.00017 32.2 6.7 49 376-424 6-54 (75)
135 PF01486 K-box: K-box region; 79.6 8 0.00017 32.9 6.9 47 374-420 49-100 (100)
136 PF10211 Ax_dynein_light: Axon 79.6 18 0.00039 34.6 10.0 21 400-420 168-188 (189)
137 PF05377 FlaC_arch: Flagella a 79.5 4.6 0.0001 32.2 5.0 35 375-409 8-42 (55)
138 PF08614 ATG16: Autophagy prot 79.4 18 0.00039 34.2 9.9 45 373-417 129-173 (194)
139 COG2900 SlyX Uncharacterized p 79.3 13 0.00029 31.2 7.8 51 374-424 8-58 (72)
140 PF09755 DUF2046: Uncharacteri 79.2 4.3 9.4E-05 42.1 6.0 41 377-417 23-63 (310)
141 PF08317 Spc7: Spc7 kinetochor 79.2 15 0.00032 37.6 9.8 45 374-418 209-253 (325)
142 KOG4343 bZIP transcription fac 79.0 6.2 0.00013 43.9 7.4 66 347-423 272-337 (655)
143 COG3883 Uncharacterized protei 78.9 7.1 0.00015 39.7 7.4 58 365-422 50-111 (265)
144 PF05278 PEARLI-4: Arabidopsis 78.9 26 0.00056 35.9 11.3 60 360-419 189-252 (269)
145 COG1579 Zn-ribbon protein, pos 78.9 21 0.00045 35.9 10.5 47 355-401 33-79 (239)
146 PF04156 IncA: IncA protein; 78.6 28 0.00061 32.2 10.8 44 378-421 127-170 (191)
147 PF12329 TMF_DNA_bd: TATA elem 78.5 11 0.00023 31.2 7.1 36 383-418 35-70 (74)
148 PF07558 Shugoshin_N: Shugoshi 78.3 1.9 4.1E-05 32.8 2.4 35 384-418 10-44 (46)
149 KOG0977 Nuclear envelope prote 78.3 16 0.00035 40.6 10.4 63 353-415 127-189 (546)
150 PRK14127 cell division protein 78.1 5.3 0.00011 35.7 5.5 39 374-412 30-68 (109)
151 PF03980 Nnf1: Nnf1 ; InterPr 77.9 3.5 7.6E-05 35.4 4.3 31 372-402 78-108 (109)
152 COG4467 Regulator of replicati 77.8 6.2 0.00013 35.6 5.8 46 378-423 5-50 (114)
153 PF04849 HAP1_N: HAP1 N-termin 77.3 5.6 0.00012 41.2 6.2 51 374-424 199-249 (306)
154 PF04859 DUF641: Plant protein 77.1 8.2 0.00018 35.5 6.6 46 373-418 86-131 (131)
155 PF15035 Rootletin: Ciliary ro 76.9 6.6 0.00014 37.6 6.2 33 382-414 75-107 (182)
156 PF14662 CCDC155: Coiled-coil 76.8 9.1 0.0002 37.4 7.1 51 373-423 66-116 (193)
157 KOG4571 Activating transcripti 76.7 17 0.00038 37.5 9.4 56 352-407 230-288 (294)
158 PF10205 KLRAQ: Predicted coil 76.7 24 0.00052 31.4 9.1 31 375-405 41-71 (102)
159 PF07989 Microtub_assoc: Micro 76.5 7.9 0.00017 32.2 5.8 26 378-403 4-29 (75)
160 PF13851 GAS: Growth-arrest sp 76.5 38 0.00082 32.7 11.3 42 376-417 88-129 (201)
161 PF04102 SlyX: SlyX; InterPro 76.4 8.5 0.00019 31.2 5.8 45 379-423 2-46 (69)
162 COG2433 Uncharacterized conser 76.2 14 0.00031 41.6 9.3 43 359-401 420-463 (652)
163 KOG0250 DNA repair protein RAD 76.1 19 0.00042 42.8 10.7 35 388-422 394-428 (1074)
164 PF08961 DUF1875: Domain of un 76.0 0.85 1.9E-05 45.4 0.0 43 372-414 120-162 (243)
165 KOG0971 Microtubule-associated 75.9 22 0.00048 42.0 10.8 31 391-421 328-358 (1243)
166 PF08647 BRE1: BRE1 E3 ubiquit 75.2 52 0.0011 28.2 10.6 66 356-421 6-71 (96)
167 KOG2264 Exostosin EXT1L [Signa 75.2 6 0.00013 44.5 6.0 42 375-416 94-135 (907)
168 PRK13729 conjugal transfer pil 75.1 5.8 0.00013 43.3 5.9 52 373-424 82-133 (475)
169 KOG2893 Zn finger protein [Gen 75.1 9.1 0.0002 39.0 6.8 36 117-152 162-201 (341)
170 PRK03918 chromosome segregatio 75.0 27 0.00058 39.4 11.2 13 194-207 25-37 (880)
171 PF04871 Uso1_p115_C: Uso1 / p 74.9 56 0.0012 29.9 11.4 53 372-424 60-113 (136)
172 PRK03992 proteasome-activating 74.8 8.9 0.00019 39.9 7.0 46 378-423 5-50 (389)
173 PF11500 Cut12: Spindle pole b 74.6 28 0.00061 32.9 9.5 55 350-404 81-135 (152)
174 KOG0995 Centromere-associated 74.5 18 0.00039 40.4 9.5 49 373-421 279-327 (581)
175 TIGR02209 ftsL_broad cell divi 74.4 11 0.00023 30.7 6.0 41 388-428 24-64 (85)
176 PRK09039 hypothetical protein; 74.3 24 0.00052 36.7 9.9 39 383-421 139-177 (343)
177 PRK04325 hypothetical protein; 74.1 13 0.00028 30.8 6.4 48 376-423 4-51 (74)
178 KOG4643 Uncharacterized coiled 73.8 22 0.00047 42.3 10.2 45 358-402 502-558 (1195)
179 KOG0976 Rho/Rac1-interacting s 73.6 15 0.00033 42.9 8.8 87 348-434 100-215 (1265)
180 PTZ00454 26S protease regulato 73.5 11 0.00023 39.8 7.3 37 379-415 27-63 (398)
181 PRK02793 phi X174 lysis protei 73.4 14 0.0003 30.4 6.5 47 377-423 4-50 (72)
182 KOG4797 Transcriptional regula 73.4 7.6 0.00017 35.2 5.2 27 374-400 67-93 (123)
183 PF04999 FtsL: Cell division p 73.4 8.8 0.00019 32.2 5.4 40 387-426 34-73 (97)
184 PF08232 Striatin: Striatin fa 73.3 44 0.00095 30.5 10.2 52 377-428 28-79 (134)
185 PF05812 Herpes_BLRF2: Herpesv 73.3 5.7 0.00012 36.1 4.5 28 372-399 1-28 (118)
186 PF07716 bZIP_2: Basic region 73.2 33 0.00071 26.3 8.1 14 379-392 37-50 (54)
187 COG3883 Uncharacterized protei 72.9 7.7 0.00017 39.5 5.8 49 372-420 50-98 (265)
188 PF13815 Dzip-like_N: Iguana/D 72.9 13 0.00028 32.7 6.6 35 376-410 82-116 (118)
189 COG1792 MreC Cell shape-determ 72.9 10 0.00023 38.3 6.8 46 375-424 67-112 (284)
190 PF14988 DUF4515: Domain of un 72.6 45 0.00099 32.5 10.8 46 376-421 151-196 (206)
191 PF09304 Cortex-I_coil: Cortex 72.5 34 0.00073 30.8 9.0 50 359-408 22-71 (107)
192 PRK12704 phosphodiesterase; Pr 72.4 37 0.00079 37.4 11.2 9 379-387 98-106 (520)
193 PF08826 DMPK_coil: DMPK coile 72.3 16 0.00035 29.6 6.4 44 379-422 16-59 (61)
194 TIGR03545 conserved hypothetic 72.2 9.8 0.00021 42.1 6.9 39 351-389 168-206 (555)
195 TIGR02231 conserved hypothetic 72.2 40 0.00087 36.4 11.3 49 376-424 126-174 (525)
196 PF12325 TMF_TATA_bd: TATA ele 72.1 20 0.00044 32.4 7.7 35 387-421 74-108 (120)
197 KOG3248 Transcription factor T 71.9 15 0.00033 39.0 7.7 83 64-148 57-157 (421)
198 PF04728 LPP: Lipoprotein leuc 71.9 20 0.00044 28.8 6.7 35 382-416 4-38 (56)
199 PF14645 Chibby: Chibby family 71.7 16 0.00035 32.7 6.9 43 376-418 73-115 (116)
200 PF13870 DUF4201: Domain of un 71.7 19 0.00041 33.4 7.7 54 374-427 91-144 (177)
201 PF13118 DUF3972: Protein of u 71.7 15 0.00033 33.7 6.9 46 376-421 80-125 (126)
202 PF07558 Shugoshin_N: Shugoshi 71.5 4.5 9.7E-05 30.8 2.9 42 355-397 3-44 (46)
203 PF11180 DUF2968: Protein of u 71.5 33 0.00073 33.6 9.5 64 358-421 110-173 (192)
204 COG1382 GimC Prefoldin, chaper 71.4 18 0.0004 32.9 7.2 44 370-413 66-109 (119)
205 KOG0933 Structural maintenance 71.2 30 0.00065 41.2 10.6 54 370-423 811-864 (1174)
206 PHA03162 hypothetical protein; 71.0 3 6.6E-05 38.6 2.2 27 371-397 10-36 (135)
207 PF11365 DUF3166: Protein of u 70.8 22 0.00048 31.3 7.4 47 376-422 3-49 (96)
208 PF10224 DUF2205: Predicted co 70.6 17 0.00037 30.9 6.5 42 373-414 29-70 (80)
209 PF07106 TBPIP: Tat binding pr 70.5 9.2 0.0002 35.2 5.3 25 392-416 113-137 (169)
210 smart00340 HALZ homeobox assoc 70.4 9.7 0.00021 29.2 4.4 23 400-422 10-32 (44)
211 KOG1853 LIS1-interacting prote 70.3 41 0.0009 34.7 10.2 71 352-422 111-184 (333)
212 PF09304 Cortex-I_coil: Cortex 70.3 24 0.00052 31.7 7.6 60 360-419 15-75 (107)
213 PF10482 CtIP_N: Tumour-suppre 70.1 18 0.00038 33.1 6.8 53 367-419 7-59 (120)
214 PTZ00454 26S protease regulato 70.1 18 0.00039 38.3 8.0 40 384-423 25-64 (398)
215 PF04568 IATP: Mitochondrial A 70.1 25 0.00053 31.1 7.6 45 360-404 55-99 (100)
216 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.8 26 0.00057 31.3 7.9 81 346-427 39-123 (132)
217 PRK00295 hypothetical protein; 69.6 18 0.00039 29.5 6.2 44 379-422 3-46 (68)
218 PRK14872 rod shape-determining 69.5 11 0.00023 39.6 6.1 40 377-420 60-99 (337)
219 KOG4797 Transcriptional regula 69.5 9.3 0.0002 34.6 4.9 26 390-415 69-94 (123)
220 PRK00846 hypothetical protein; 69.4 19 0.00041 30.5 6.5 46 377-422 9-54 (77)
221 PF12718 Tropomyosin_1: Tropom 69.3 22 0.00048 32.6 7.5 34 370-403 31-64 (143)
222 PRK00106 hypothetical protein; 69.3 47 0.001 37.0 11.2 8 380-387 114-121 (535)
223 PF05557 MAD: Mitotic checkpoi 69.2 16 0.00034 41.1 7.8 50 375-424 511-588 (722)
224 PF10481 CENP-F_N: Cenp-F N-te 69.2 23 0.0005 36.6 8.2 65 358-422 37-129 (307)
225 PF12709 Kinetocho_Slk19: Cent 69.0 16 0.00035 31.7 6.1 33 375-407 50-82 (87)
226 PF15556 Zwint: ZW10 interacto 68.8 70 0.0015 32.1 11.1 62 357-418 117-178 (252)
227 PF00038 Filament: Intermediat 68.7 50 0.0011 32.7 10.4 38 384-421 212-249 (312)
228 KOG0709 CREB/ATF family transc 68.6 11 0.00024 41.0 6.2 43 383-425 274-316 (472)
229 PRK02224 chromosome segregatio 68.6 43 0.00093 38.0 11.1 19 373-391 508-526 (880)
230 PF14775 NYD-SP28_assoc: Sperm 68.1 33 0.00072 27.5 7.3 37 383-420 22-58 (60)
231 PF13935 Ead_Ea22: Ead/Ea22-li 68.1 56 0.0012 29.7 9.8 48 374-421 90-138 (139)
232 PF15070 GOLGA2L5: Putative go 68.0 48 0.001 37.4 11.1 19 371-389 119-137 (617)
233 PF06632 XRCC4: DNA double-str 68.0 20 0.00044 37.6 7.7 21 397-417 196-216 (342)
234 smart00340 HALZ homeobox assoc 68.0 6.4 0.00014 30.2 3.1 29 374-402 5-33 (44)
235 PF03670 UPF0184: Uncharacteri 67.9 26 0.00057 30.2 7.0 41 375-422 34-74 (83)
236 KOG2391 Vacuolar sorting prote 67.9 36 0.00078 36.2 9.4 57 348-404 220-276 (365)
237 PRK15396 murein lipoprotein; P 67.7 26 0.00057 29.7 7.0 47 375-421 26-72 (78)
238 PF10805 DUF2730: Protein of u 67.6 46 0.001 29.0 8.8 48 376-423 44-93 (106)
239 PF09730 BicD: Microtubule-ass 67.4 34 0.00073 39.4 9.9 21 402-422 97-117 (717)
240 PRK03992 proteasome-activating 67.4 17 0.00036 37.9 7.1 42 375-416 9-50 (389)
241 PF05667 DUF812: Protein of un 67.2 19 0.00041 40.3 7.8 45 375-419 336-380 (594)
242 KOG0288 WD40 repeat protein Ti 67.1 53 0.0012 35.8 10.7 43 357-399 26-73 (459)
243 PF06495 Transformer: Fruit fl 66.5 8.8 0.00019 37.1 4.4 9 89-97 118-126 (182)
244 PHA03155 hypothetical protein; 66.5 7.3 0.00016 35.3 3.7 25 375-399 9-33 (115)
245 PRK14160 heat shock protein Gr 66.2 22 0.00047 35.1 7.2 45 374-418 54-98 (211)
246 PF15136 UPF0449: Uncharacteri 66.1 31 0.00068 30.5 7.4 40 381-420 57-96 (97)
247 PHA03162 hypothetical protein; 66.0 8.7 0.00019 35.6 4.1 30 397-426 15-44 (135)
248 PRK04863 mukB cell division pr 65.9 46 0.00099 41.2 11.2 67 353-419 321-400 (1486)
249 PF13863 DUF4200: Domain of un 65.7 65 0.0014 27.9 9.4 25 371-395 78-102 (126)
250 KOG2010 Double stranded RNA bi 65.6 23 0.00049 37.6 7.5 48 373-420 153-200 (405)
251 PRK10803 tol-pal system protei 65.3 19 0.0004 36.0 6.7 50 369-418 56-105 (263)
252 KOG0982 Centrosomal protein Nu 65.2 34 0.00074 37.4 8.9 55 369-425 280-334 (502)
253 KOG2077 JNK/SAPK-associated pr 65.1 11 0.00025 42.3 5.5 46 377-422 325-370 (832)
254 PF09766 FimP: Fms-interacting 65.0 29 0.00063 36.2 8.2 53 369-421 103-155 (355)
255 PRK00736 hypothetical protein; 64.7 26 0.00056 28.6 6.2 44 379-422 3-46 (68)
256 PF14915 CCDC144C: CCDC144C pr 64.6 27 0.00059 36.3 7.7 66 361-426 180-245 (305)
257 COG1730 GIM5 Predicted prefold 64.5 27 0.00059 32.6 7.1 25 391-415 111-135 (145)
258 KOG0483 Transcription factor H 64.3 13 0.00027 36.4 5.1 28 376-403 114-141 (198)
259 PF04849 HAP1_N: HAP1 N-termin 64.3 21 0.00044 37.2 6.9 43 376-418 243-285 (306)
260 PF05622 HOOK: HOOK protein; 64.2 2.2 4.8E-05 47.7 0.0 77 346-422 296-376 (713)
261 KOG3650 Predicted coiled-coil 63.9 15 0.00032 33.0 5.0 44 370-413 66-109 (120)
262 PHA03155 hypothetical protein; 63.7 11 0.00023 34.3 4.2 30 397-426 10-39 (115)
263 PF10473 CENP-F_leu_zip: Leuci 63.4 74 0.0016 29.6 9.7 16 363-378 48-63 (140)
264 PF08537 NBP1: Fungal Nap bind 63.4 68 0.0015 33.8 10.4 44 379-422 180-223 (323)
265 PF07412 Geminin: Geminin; In 63.3 18 0.00038 35.6 5.9 46 375-424 126-171 (200)
266 KOG2129 Uncharacterized conser 63.1 8.7 0.00019 41.7 4.1 22 374-395 64-85 (552)
267 PRK12705 hypothetical protein; 63.0 86 0.0019 34.8 11.6 44 378-421 92-135 (508)
268 smart00787 Spc7 Spc7 kinetocho 62.9 64 0.0014 33.4 10.1 31 375-405 205-235 (312)
269 PRK13922 rod shape-determining 62.9 26 0.00057 34.5 7.2 38 372-409 67-107 (276)
270 PF02403 Seryl_tRNA_N: Seryl-t 62.8 40 0.00087 28.6 7.4 28 385-412 71-98 (108)
271 PF04899 MbeD_MobD: MbeD/MobD 62.7 34 0.00074 28.4 6.6 38 376-413 30-67 (70)
272 cd07596 BAR_SNX The Bin/Amphip 62.7 83 0.0018 28.7 10.0 54 353-406 110-170 (218)
273 PF11365 DUF3166: Protein of u 62.6 20 0.00043 31.5 5.5 40 383-422 3-42 (96)
274 PF14282 FlxA: FlxA-like prote 62.5 25 0.00053 30.8 6.1 23 396-418 52-74 (106)
275 PF09789 DUF2353: Uncharacteri 62.5 82 0.0018 33.1 10.8 37 389-425 66-102 (319)
276 KOG4001 Axonemal dynein light 62.4 89 0.0019 31.4 10.5 27 398-424 231-257 (259)
277 PF05278 PEARLI-4: Arabidopsis 62.2 1.2E+02 0.0025 31.3 11.6 54 371-424 211-264 (269)
278 PF15035 Rootletin: Ciliary ro 62.0 36 0.00078 32.7 7.6 32 379-410 86-117 (182)
279 TIGR00606 rad50 rad50. This fa 62.0 52 0.0011 39.7 10.6 19 380-398 887-905 (1311)
280 COG4942 Membrane-bound metallo 61.9 45 0.00097 36.2 9.1 48 371-418 70-117 (420)
281 PF10146 zf-C4H2: Zinc finger- 61.8 96 0.0021 30.9 10.8 41 377-417 63-103 (230)
282 KOG1853 LIS1-interacting prote 61.7 84 0.0018 32.6 10.4 30 374-403 52-81 (333)
283 COG2919 Septum formation initi 61.6 1.2E+02 0.0025 27.0 10.8 20 350-369 18-37 (117)
284 PF06210 DUF1003: Protein of u 61.4 37 0.00081 30.1 7.1 50 359-413 56-105 (108)
285 PF05911 DUF869: Plant protein 61.4 66 0.0014 37.4 10.8 53 374-426 92-165 (769)
286 PF15397 DUF4618: Domain of un 61.4 80 0.0017 32.2 10.3 46 379-424 177-222 (258)
287 PF04880 NUDE_C: NUDE protein, 61.3 11 0.00024 35.9 4.1 30 389-419 25-54 (166)
288 PF05667 DUF812: Protein of un 61.3 28 0.00061 39.0 7.7 39 374-412 342-380 (594)
289 KOG0971 Microtubule-associated 61.3 58 0.0013 38.7 10.3 49 375-423 326-389 (1243)
290 KOG2236 Uncharacterized conser 60.9 16 0.00035 39.9 5.6 17 47-63 329-345 (483)
291 PF12329 TMF_DNA_bd: TATA elem 60.8 37 0.00079 28.1 6.5 50 372-421 10-59 (74)
292 PF12808 Mto2_bdg: Micro-tubul 60.8 25 0.00055 27.8 5.3 26 377-402 25-50 (52)
293 PF03980 Nnf1: Nnf1 ; InterPr 60.7 47 0.001 28.5 7.5 32 391-422 76-107 (109)
294 PF09755 DUF2046: Uncharacteri 60.7 1.2E+02 0.0025 31.9 11.5 25 397-421 180-204 (310)
295 TIGR02977 phageshock_pspA phag 60.5 69 0.0015 31.0 9.4 47 374-420 99-145 (219)
296 KOG0804 Cytoplasmic Zn-finger 60.3 50 0.0011 36.3 9.1 46 356-401 367-416 (493)
297 PF07047 OPA3: Optic atrophy 3 60.2 20 0.00042 32.6 5.3 37 352-394 96-132 (134)
298 PF00038 Filament: Intermediat 59.9 97 0.0021 30.7 10.6 39 363-401 212-250 (312)
299 PF07047 OPA3: Optic atrophy 3 59.8 18 0.0004 32.7 5.0 36 367-402 98-133 (134)
300 PRK05431 seryl-tRNA synthetase 59.7 67 0.0015 34.3 10.0 44 383-426 68-111 (425)
301 PF14916 CCDC92: Coiled-coil d 59.6 18 0.0004 29.4 4.4 45 374-421 3-47 (60)
302 COG1196 Smc Chromosome segrega 59.6 64 0.0014 38.5 10.7 44 375-418 440-483 (1163)
303 COG4372 Uncharacterized protei 59.4 1.1E+02 0.0025 33.3 11.4 40 376-415 139-178 (499)
304 PF08606 Prp19: Prp19/Pso4-lik 59.4 55 0.0012 27.5 7.3 46 376-421 10-69 (70)
305 PF05812 Herpes_BLRF2: Herpesv 59.3 14 0.0003 33.7 4.1 27 397-423 5-31 (118)
306 PHA03161 hypothetical protein; 59.3 76 0.0017 30.1 9.1 42 377-418 57-105 (150)
307 PF12999 PRKCSH-like: Glucosid 59.1 57 0.0012 31.5 8.4 32 371-402 143-174 (176)
308 PRK05431 seryl-tRNA synthetase 59.1 86 0.0019 33.5 10.6 28 393-420 71-98 (425)
309 PF01920 Prefoldin_2: Prefoldi 59.1 30 0.00065 28.7 5.9 40 384-423 65-104 (106)
310 PF07334 IFP_35_N: Interferon- 59.0 18 0.00039 30.7 4.5 27 383-409 2-28 (76)
311 KOG0239 Kinesin (KAR3 subfamil 58.7 91 0.002 35.6 11.2 17 409-425 300-316 (670)
312 KOG0250 DNA repair protein RAD 58.7 72 0.0016 38.3 10.6 16 190-206 60-75 (1074)
313 PRK03947 prefoldin subunit alp 58.5 52 0.0011 29.3 7.6 17 383-399 110-126 (140)
314 COG3879 Uncharacterized protei 58.4 47 0.001 33.7 8.0 21 402-422 89-109 (247)
315 PF06810 Phage_GP20: Phage min 58.1 61 0.0013 30.2 8.3 32 374-405 34-68 (155)
316 TIGR00414 serS seryl-tRNA synt 57.7 54 0.0012 34.9 8.8 44 383-426 71-114 (418)
317 KOG2264 Exostosin EXT1L [Signa 57.6 66 0.0014 36.7 9.6 45 373-417 106-150 (907)
318 PF05600 DUF773: Protein of un 57.6 39 0.00085 37.1 7.9 58 361-420 435-492 (507)
319 PF13094 CENP-Q: CENP-Q, a CEN 57.2 42 0.00091 30.7 7.0 52 374-425 41-92 (160)
320 PRK10698 phage shock protein P 57.1 1.3E+02 0.0028 29.5 10.7 45 376-420 101-145 (222)
321 PLN02678 seryl-tRNA synthetase 57.0 79 0.0017 34.4 10.0 44 383-426 73-116 (448)
322 KOG0161 Myosin class II heavy 56.9 60 0.0013 41.3 10.1 69 358-426 1644-1712(1930)
323 PF01486 K-box: K-box region; 56.7 55 0.0012 27.8 7.2 35 364-398 61-99 (100)
324 COG2919 Septum formation initi 56.6 34 0.00073 30.4 6.1 44 381-424 43-86 (117)
325 TIGR00414 serS seryl-tRNA synt 56.5 87 0.0019 33.4 10.1 28 392-419 73-100 (418)
326 KOG0249 LAR-interacting protei 56.5 60 0.0013 37.7 9.2 41 382-422 217-257 (916)
327 KOG0996 Structural maintenance 56.4 54 0.0012 39.8 9.2 57 367-423 535-591 (1293)
328 PF07889 DUF1664: Protein of u 56.4 62 0.0013 29.7 7.8 48 374-421 68-115 (126)
329 PF14817 HAUS5: HAUS augmin-li 56.4 29 0.00063 39.3 6.9 32 377-408 82-113 (632)
330 COG4372 Uncharacterized protei 56.3 1.3E+02 0.0027 33.0 11.1 42 381-422 137-178 (499)
331 PF15030 DUF4527: Protein of u 56.0 88 0.0019 32.1 9.4 47 359-405 43-89 (277)
332 PRK04863 mukB cell division pr 56.0 87 0.0019 38.9 11.2 44 375-418 377-420 (1486)
333 TIGR02231 conserved hypothetic 56.0 95 0.0021 33.6 10.5 42 383-424 126-167 (525)
334 COG4238 Murein lipoprotein [Ce 55.9 63 0.0014 27.6 7.1 48 374-421 25-72 (78)
335 TIGR03495 phage_LysB phage lys 55.8 1.3E+02 0.0027 28.0 9.8 36 386-421 66-101 (135)
336 PF10779 XhlA: Haemolysin XhlA 55.8 41 0.0009 27.2 6.0 33 379-411 18-50 (71)
337 PF05300 DUF737: Protein of un 55.6 83 0.0018 30.6 8.9 42 362-403 122-163 (187)
338 PRK10361 DNA recombination pro 55.4 1.2E+02 0.0026 33.4 11.1 24 377-400 63-86 (475)
339 PF09403 FadA: Adhesion protei 55.4 1.7E+02 0.0037 26.8 10.9 62 356-419 36-106 (126)
340 KOG2072 Translation initiation 55.4 74 0.0016 37.5 9.8 76 351-426 606-694 (988)
341 cd07429 Cby_like Chibby, a nuc 55.3 25 0.00054 31.5 5.0 21 383-403 81-101 (108)
342 PF11180 DUF2968: Protein of u 55.3 99 0.0021 30.4 9.4 38 374-411 147-184 (192)
343 PRK06569 F0F1 ATP synthase sub 55.3 1.3E+02 0.0029 28.4 10.0 43 354-396 42-84 (155)
344 COG1340 Uncharacterized archae 55.2 1.5E+02 0.0033 30.8 11.3 45 374-418 48-92 (294)
345 TIGR01242 26Sp45 26S proteasom 55.1 27 0.00058 35.7 5.9 34 379-412 4-37 (364)
346 PF06216 RTBV_P46: Rice tungro 54.9 39 0.00084 34.9 6.9 48 359-409 66-113 (389)
347 KOG0980 Actin-binding protein 54.9 96 0.0021 36.7 10.6 67 357-423 449-515 (980)
348 PF11544 Spc42p: Spindle pole 54.8 80 0.0017 26.9 7.6 34 383-416 21-54 (76)
349 PF10168 Nup88: Nuclear pore c 54.8 1.3E+02 0.0028 34.7 11.6 50 369-418 574-623 (717)
350 TIGR01554 major_cap_HK97 phage 54.8 52 0.0011 33.9 7.9 25 375-399 35-59 (378)
351 TIGR03689 pup_AAA proteasome A 54.6 24 0.00053 38.8 5.8 41 386-426 6-46 (512)
352 PF07200 Mod_r: Modifier of ru 54.4 1.2E+02 0.0025 27.3 9.3 49 358-407 40-88 (150)
353 TIGR02680 conserved hypothetic 54.4 1.1E+02 0.0025 37.4 11.7 66 362-428 265-330 (1353)
354 PF07407 Seadorna_VP6: Seadorn 54.4 30 0.00064 36.8 6.1 12 375-386 47-58 (420)
355 PF05528 Coronavirus_5: Corona 54.2 7.7 0.00017 32.9 1.5 29 32-60 52-80 (82)
356 PRK09343 prefoldin subunit bet 54.1 78 0.0017 28.2 8.0 38 377-414 74-111 (121)
357 PRK14148 heat shock protein Gr 54.1 32 0.00069 33.5 5.9 21 377-397 57-77 (195)
358 KOG0288 WD40 repeat protein Ti 54.0 1.1E+02 0.0024 33.5 10.2 18 386-403 53-70 (459)
359 PF10481 CENP-F_N: Cenp-F N-te 53.9 90 0.002 32.5 9.2 71 350-420 15-92 (307)
360 PF06810 Phage_GP20: Phage min 53.9 35 0.00076 31.8 6.0 38 375-412 28-68 (155)
361 TIGR03185 DNA_S_dndD DNA sulfu 53.8 1.1E+02 0.0023 34.3 10.6 44 375-418 422-465 (650)
362 PF11544 Spc42p: Spindle pole 53.6 61 0.0013 27.6 6.7 44 377-420 8-51 (76)
363 KOG0239 Kinesin (KAR3 subfamil 53.5 62 0.0013 36.9 8.9 45 376-420 243-287 (670)
364 PF09728 Taxilin: Myosin-like 53.5 83 0.0018 32.4 9.1 77 352-428 49-154 (309)
365 KOG3811 Transcription factor A 53.4 23 0.0005 38.3 5.2 36 112-148 51-88 (434)
366 PF11382 DUF3186: Protein of u 53.4 39 0.00084 34.6 6.7 40 375-414 33-72 (308)
367 PF14282 FlxA: FlxA-like prote 53.4 52 0.0011 28.8 6.6 24 371-394 48-71 (106)
368 PLN02320 seryl-tRNA synthetase 53.3 32 0.0007 37.9 6.5 44 383-426 132-175 (502)
369 COG1382 GimC Prefoldin, chaper 53.3 39 0.00085 30.8 6.0 31 377-407 80-110 (119)
370 TIGR03689 pup_AAA proteasome A 53.1 32 0.00069 37.9 6.4 41 376-416 3-43 (512)
371 PF05911 DUF869: Plant protein 53.1 52 0.0011 38.2 8.3 66 369-434 129-223 (769)
372 PF10779 XhlA: Haemolysin XhlA 53.0 90 0.0019 25.3 7.5 7 379-385 11-17 (71)
373 cd07596 BAR_SNX The Bin/Amphip 53.0 1.8E+02 0.0038 26.6 10.4 51 367-417 110-167 (218)
374 PHA03011 hypothetical protein; 52.9 85 0.0018 28.4 7.8 47 375-421 65-118 (120)
375 PF04999 FtsL: Cell division p 52.8 45 0.00098 27.9 6.0 26 376-401 44-69 (97)
376 cd00632 Prefoldin_beta Prefold 52.8 70 0.0015 27.4 7.3 30 391-420 73-102 (105)
377 PF06216 RTBV_P46: Rice tungro 52.7 35 0.00077 35.2 6.2 51 374-424 64-114 (389)
378 PF04012 PspA_IM30: PspA/IM30 52.7 1E+02 0.0022 29.3 9.0 44 376-419 100-143 (221)
379 PF03245 Phage_lysis: Bacterio 52.6 1.3E+02 0.0028 27.0 9.2 23 399-421 39-61 (125)
380 PRK09413 IS2 repressor TnpA; R 52.4 29 0.00064 30.4 5.0 23 397-419 80-102 (121)
381 PF02388 FemAB: FemAB family; 52.4 54 0.0012 34.5 7.8 46 374-419 242-297 (406)
382 TIGR03185 DNA_S_dndD DNA sulfu 52.3 94 0.002 34.6 9.9 47 374-420 209-255 (650)
383 PF06698 DUF1192: Protein of u 52.0 47 0.001 26.9 5.6 24 376-399 23-46 (59)
384 PRK06835 DNA replication prote 51.7 1.2E+02 0.0026 31.4 9.9 20 402-421 65-84 (329)
385 TIGR01843 type_I_hlyD type I s 51.5 2E+02 0.0044 29.0 11.5 21 400-420 251-271 (423)
386 PF05852 DUF848: Gammaherpesvi 51.4 1.3E+02 0.0027 28.5 9.1 45 376-420 63-107 (146)
387 cd00890 Prefoldin Prefoldin is 51.2 55 0.0012 28.1 6.4 33 377-409 90-122 (129)
388 KOG4807 F-actin binding protei 51.1 70 0.0015 34.9 8.3 92 347-438 360-477 (593)
389 KOG4360 Uncharacterized coiled 51.1 44 0.00095 37.3 6.9 42 378-419 223-264 (596)
390 PF13879 KIAA1430: KIAA1430 ho 51.1 1E+02 0.0022 25.4 7.8 39 381-419 36-97 (98)
391 TIGR01730 RND_mfp RND family e 51.0 1E+02 0.0022 29.8 8.9 34 388-421 102-135 (322)
392 PF10506 MCC-bdg_PDZ: PDZ doma 50.9 42 0.00091 27.7 5.3 38 378-415 2-39 (67)
393 PF07200 Mod_r: Modifier of ru 50.9 58 0.0013 29.2 6.7 51 360-410 34-84 (150)
394 PF09727 CortBP2: Cortactin-bi 50.8 1.8E+02 0.0039 28.6 10.4 64 355-420 96-173 (192)
395 PRK14143 heat shock protein Gr 50.8 35 0.00076 34.2 5.8 23 376-398 83-105 (238)
396 PF15030 DUF4527: Protein of u 50.7 1.1E+02 0.0024 31.4 9.2 73 349-421 11-84 (277)
397 PF10146 zf-C4H2: Zinc finger- 50.5 63 0.0014 32.2 7.5 53 372-424 48-103 (230)
398 KOG3433 Protein involved in me 50.3 1.4E+02 0.0029 29.6 9.4 63 355-417 97-159 (203)
399 PHA02109 hypothetical protein 50.2 44 0.00095 32.8 6.1 39 372-410 191-229 (233)
400 PRK14127 cell division protein 50.0 82 0.0018 28.2 7.4 37 385-421 34-70 (109)
401 PF04201 TPD52: Tumour protein 49.9 51 0.0011 31.6 6.4 32 378-409 33-64 (162)
402 KOG2891 Surface glycoprotein [ 49.6 1.5E+02 0.0032 31.3 10.1 10 40-49 47-56 (445)
403 KOG0946 ER-Golgi vesicle-tethe 49.6 44 0.00096 39.1 6.9 47 375-421 651-697 (970)
404 PF06785 UPF0242: Uncharacteri 49.6 91 0.002 33.4 8.7 65 356-424 78-156 (401)
405 COG1842 PspA Phage shock prote 49.5 2.5E+02 0.0054 28.0 11.3 45 377-421 95-139 (225)
406 PRK09973 putative outer membra 49.4 82 0.0018 27.3 7.0 46 375-420 25-70 (85)
407 PRK14161 heat shock protein Gr 49.4 66 0.0014 30.8 7.2 26 377-402 29-54 (178)
408 PLN02678 seryl-tRNA synthetase 49.2 47 0.001 36.0 6.9 29 392-420 75-103 (448)
409 TIGR02338 gimC_beta prefoldin, 49.2 81 0.0018 27.3 7.1 33 377-409 70-102 (110)
410 PF10168 Nup88: Nuclear pore c 49.1 1.5E+02 0.0032 34.2 11.0 34 386-419 584-617 (717)
411 PF09730 BicD: Microtubule-ass 49.1 48 0.001 38.2 7.1 48 375-422 42-89 (717)
412 COG1196 Smc Chromosome segrega 48.9 1.1E+02 0.0023 36.7 10.3 8 114-121 571-578 (1163)
413 KOG0999 Microtubule-associated 48.9 1.1E+02 0.0024 34.8 9.6 41 381-421 170-213 (772)
414 PF14645 Chibby: Chibby family 48.8 35 0.00076 30.6 4.9 6 302-307 35-40 (116)
415 PF12711 Kinesin-relat_1: Kine 48.8 66 0.0014 27.8 6.4 38 382-421 45-82 (86)
416 PF11853 DUF3373: Protein of u 48.7 16 0.00035 40.1 3.3 23 375-397 32-54 (489)
417 KOG0243 Kinesin-like protein [ 48.7 1.4E+02 0.0031 35.9 11.0 27 379-405 446-472 (1041)
418 PF04012 PspA_IM30: PspA/IM30 48.6 1.7E+02 0.0036 27.9 9.8 45 379-423 96-140 (221)
419 PF08781 DP: Transcription fac 48.6 86 0.0019 29.4 7.6 46 347-416 1-46 (142)
420 PF09738 DUF2051: Double stran 48.4 41 0.0009 34.8 6.0 50 375-424 113-162 (302)
421 PF12128 DUF3584: Protein of u 48.4 1.7E+02 0.0037 35.3 11.8 58 363-420 479-536 (1201)
422 PF06428 Sec2p: GDP/GTP exchan 48.3 88 0.0019 27.5 7.2 21 401-421 43-63 (100)
423 PF10883 DUF2681: Protein of u 48.1 60 0.0013 28.1 6.0 41 382-422 24-66 (87)
424 KOG2685 Cystoskeletal protein 48.1 1.9E+02 0.0042 31.5 11.0 75 352-427 49-123 (421)
425 PF01920 Prefoldin_2: Prefoldi 47.5 81 0.0017 26.1 6.7 37 375-411 63-99 (106)
426 KOG0837 Transcriptional activa 47.3 87 0.0019 32.3 7.9 38 382-419 228-265 (279)
427 PRK11239 hypothetical protein; 47.3 30 0.00064 34.5 4.6 27 377-403 186-212 (215)
428 COG1340 Uncharacterized archae 47.3 2.1E+02 0.0045 29.9 10.8 43 378-420 45-87 (294)
429 PF03670 UPF0184: Uncharacteri 47.1 73 0.0016 27.5 6.3 32 374-405 40-71 (83)
430 PF07412 Geminin: Geminin; In 47.0 43 0.00093 33.0 5.6 28 389-416 126-153 (200)
431 KOG4010 Coiled-coil protein TP 46.9 84 0.0018 31.1 7.5 28 378-405 48-75 (208)
432 PF14362 DUF4407: Domain of un 46.8 1.5E+02 0.0032 29.7 9.5 28 373-400 134-161 (301)
433 TIGR00606 rad50 rad50. This fa 46.7 1.2E+02 0.0027 36.7 10.4 30 360-389 843-872 (1311)
434 KOG4673 Transcription factor T 46.7 58 0.0013 37.7 7.2 18 104-121 42-63 (961)
435 PHA02675 ORF104 fusion protein 46.6 83 0.0018 27.5 6.6 11 349-359 33-43 (90)
436 KOG0978 E3 ubiquitin ligase in 46.6 1.1E+02 0.0023 35.4 9.4 62 365-426 564-625 (698)
437 TIGR01843 type_I_hlyD type I s 46.6 2.8E+02 0.006 28.1 11.6 7 413-419 257-263 (423)
438 PF09798 LCD1: DNA damage chec 46.6 58 0.0013 37.2 7.2 49 370-421 11-59 (654)
439 PRK10698 phage shock protein P 46.4 2.5E+02 0.0054 27.5 10.8 42 381-422 99-140 (222)
440 PF10174 Cast: RIM-binding pro 46.4 51 0.0011 38.3 6.9 64 357-420 283-354 (775)
441 KOG1318 Helix loop helix trans 46.3 95 0.0021 33.7 8.4 18 114-133 71-88 (411)
442 PRK10361 DNA recombination pro 46.3 2.4E+02 0.0051 31.3 11.6 29 371-399 64-92 (475)
443 PF06428 Sec2p: GDP/GTP exchan 46.2 1.1E+02 0.0023 27.0 7.4 25 359-383 7-31 (100)
444 COG1792 MreC Cell shape-determ 46.2 59 0.0013 33.1 6.6 26 374-399 83-108 (284)
445 PRK13923 putative spore coat p 46.1 82 0.0018 30.4 7.2 41 373-413 110-150 (170)
446 PF12777 MT: Microtubule-bindi 46.0 71 0.0015 32.9 7.3 42 365-406 233-274 (344)
447 PF00261 Tropomyosin: Tropomyo 45.9 80 0.0017 30.8 7.3 48 374-421 190-237 (237)
448 PF15456 Uds1: Up-regulated Du 45.9 2.4E+02 0.0051 25.7 11.2 37 350-386 25-61 (124)
449 KOG4001 Axonemal dynein light 45.7 1.1E+02 0.0024 30.8 8.2 56 362-417 169-228 (259)
450 PF12777 MT: Microtubule-bindi 45.7 1.4E+02 0.003 30.8 9.4 49 370-418 231-279 (344)
451 PF14916 CCDC92: Coiled-coil d 45.6 26 0.00056 28.5 3.2 46 379-427 1-46 (60)
452 PF10498 IFT57: Intra-flagella 45.6 1.9E+02 0.0041 30.6 10.5 7 91-97 25-31 (359)
453 PF15290 Syntaphilin: Golgi-lo 45.5 56 0.0012 34.0 6.3 8 375-382 90-97 (305)
454 PRK09413 IS2 repressor TnpA; R 45.1 51 0.0011 28.9 5.4 27 377-403 74-100 (121)
455 TIGR01628 PABP-1234 polyadenyl 45.1 60 0.0013 34.9 6.9 8 104-111 411-418 (562)
456 TIGR01242 26Sp45 26S proteasom 45.0 40 0.00087 34.4 5.4 40 385-424 3-42 (364)
457 PF10205 KLRAQ: Predicted coil 44.9 1.7E+02 0.0036 26.3 8.4 42 378-419 30-71 (102)
458 PF13942 Lipoprotein_20: YfhG 44.4 1.7E+02 0.0037 28.6 9.0 51 363-415 114-164 (179)
459 PF05837 CENP-H: Centromere pr 44.3 2.2E+02 0.0047 24.9 9.1 48 373-421 37-84 (106)
460 PF15236 CCDC66: Coiled-coil d 44.3 2.9E+02 0.0063 26.4 11.0 55 347-401 46-100 (157)
461 KOG4687 Uncharacterized coiled 44.2 1.7E+02 0.0036 30.8 9.5 34 391-424 86-119 (389)
462 PF03961 DUF342: Protein of un 44.2 1.1E+02 0.0024 32.5 8.6 33 389-421 376-408 (451)
463 PRK10636 putative ABC transpor 44.1 78 0.0017 35.2 7.7 24 374-397 563-586 (638)
464 PF06495 Transformer: Fruit fl 43.9 28 0.0006 33.8 3.7 16 114-131 158-173 (182)
465 TIGR01834 PHA_synth_III_E poly 43.9 32 0.00069 36.0 4.5 31 392-422 286-316 (320)
466 PLN02320 seryl-tRNA synthetase 43.8 1.4E+02 0.0031 33.1 9.5 27 393-419 135-161 (502)
467 KOG4643 Uncharacterized coiled 43.7 1.3E+02 0.0029 36.3 9.6 61 355-415 375-435 (1195)
468 COG4420 Predicted membrane pro 43.6 1E+02 0.0022 30.3 7.5 47 370-416 130-176 (191)
469 PF08232 Striatin: Striatin fa 43.6 1.6E+02 0.0034 26.9 8.4 61 356-416 14-74 (134)
470 PF01763 Herpes_UL6: Herpesvir 43.5 77 0.0017 35.6 7.5 44 374-417 363-406 (557)
471 PF10458 Val_tRNA-synt_C: Valy 43.5 1.7E+02 0.0036 23.3 7.8 22 400-421 44-65 (66)
472 KOG0161 Myosin class II heavy 43.3 1.6E+02 0.0036 37.7 10.9 73 349-421 1431-1503(1930)
473 KOG0995 Centromere-associated 43.1 1.3E+02 0.0028 34.0 9.1 73 349-421 248-320 (581)
474 cd07429 Cby_like Chibby, a nuc 43.0 50 0.0011 29.7 4.9 36 388-423 72-107 (108)
475 PF11853 DUF3373: Protein of u 43.0 22 0.00048 39.1 3.3 36 374-410 25-60 (489)
476 PF13870 DUF4201: Domain of un 43.0 87 0.0019 29.0 6.8 55 373-427 83-137 (177)
477 PF08286 Spc24: Spc24 subunit 42.8 8.8 0.00019 33.8 0.2 45 376-420 1-45 (118)
478 PRK10636 putative ABC transpor 42.7 1.9E+02 0.0042 32.2 10.5 72 350-421 545-631 (638)
479 KOG0612 Rho-associated, coiled 42.7 1.6E+02 0.0036 36.1 10.3 81 346-426 470-553 (1317)
480 PF06818 Fez1: Fez1; InterPro 42.6 76 0.0017 31.3 6.6 51 370-420 76-156 (202)
481 TIGR02680 conserved hypothetic 42.6 1.8E+02 0.0039 35.7 11.0 71 350-420 273-351 (1353)
482 KOG2185 Predicted RNA-processi 42.6 1.1E+02 0.0025 33.4 8.3 70 346-415 416-485 (486)
483 COG2900 SlyX Uncharacterized p 42.5 1.1E+02 0.0024 25.9 6.5 46 376-421 3-48 (72)
484 PRK14158 heat shock protein Gr 42.5 62 0.0013 31.5 5.9 43 378-420 37-79 (194)
485 KOG1318 Helix loop helix trans 42.4 55 0.0012 35.5 6.0 41 367-407 283-323 (411)
486 PF04899 MbeD_MobD: MbeD/MobD 42.4 1.5E+02 0.0033 24.6 7.4 50 374-423 21-70 (70)
487 PRK11020 hypothetical protein; 42.4 1.1E+02 0.0024 28.1 7.0 45 373-417 4-53 (118)
488 PRK03598 putative efflux pump 42.4 1.7E+02 0.0038 29.3 9.3 73 349-421 127-204 (331)
489 PF06632 XRCC4: DNA double-str 42.3 84 0.0018 33.1 7.2 42 373-414 129-170 (342)
490 PF13600 DUF4140: N-terminal d 42.2 58 0.0013 27.5 5.1 35 374-408 70-104 (104)
491 PF13805 Pil1: Eisosome compon 42.1 78 0.0017 32.5 6.8 55 352-406 143-197 (271)
492 KOG0447 Dynamin-like GTP bindi 42.0 38 0.00082 38.6 4.8 62 373-438 225-286 (980)
493 COG3879 Uncharacterized protei 41.9 1.5E+02 0.0033 30.1 8.7 63 363-425 46-112 (247)
494 PRK14153 heat shock protein Gr 41.9 60 0.0013 31.7 5.7 47 374-420 24-72 (194)
495 PF15070 GOLGA2L5: Putative go 41.8 1.3E+02 0.0027 34.2 8.9 59 363-421 4-62 (617)
496 cd07666 BAR_SNX7 The Bin/Amphi 41.7 1.1E+02 0.0024 30.7 7.7 50 367-419 156-205 (243)
497 PF15369 KIAA1328: Uncharacter 41.7 2E+02 0.0044 30.4 9.8 63 356-419 7-71 (328)
498 cd00632 Prefoldin_beta Prefold 41.4 90 0.002 26.7 6.2 45 378-422 60-104 (105)
499 PRK14162 heat shock protein Gr 41.4 40 0.00087 32.8 4.5 48 373-420 31-78 (194)
500 PRK11448 hsdR type I restricti 41.3 1.7E+02 0.0036 35.5 10.3 71 350-420 149-223 (1123)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=3.2e-62 Score=456.08 Aligned_cols=161 Identities=59% Similarity=0.952 Sum_probs=144.5
Q ss_pred CCCCCCCCCCcccccccCCC---CCCCC--CCCCCCCCCcccc-CCCCCCCCCCCCCCCccccCCCCcCCCCCCCCCCCC
Q 036551 73 TTSTGAVNPDWSGFQAYSPM---PPHGF--LASSPQAHPYMWG-VQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYP 146 (453)
Q Consensus 73 ~~~~~~~yPDWs~mQAYy~~---pP~~f--~as~~~pHPYmWG-~Q~mmpPYGtP~~PY~A~Yp~GgvYAHP~mp~gs~P 146 (453)
.++++++||||++|||||++ ||||| +|++|+||||||| +|||||||||| |||+||||||||||||+||+|+||
T Consensus 22 ~~~~~~~ypDWs~mQAYyg~~~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP-~pY~A~YphGgvYAHP~mp~~s~p 100 (189)
T PF07777_consen 22 DQPTPHVYPDWSAMQAYYGPGAPPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTP-VPYPAMYPHGGVYAHPSMPPGSHP 100 (189)
T ss_pred CCCCCccCCccHhhhhccCCCCCCcccCcccCCCCCCCCcccCCCccccCCCCCC-CCCccccCCCccccCCCCCccccc
Confidence 35667899999999999976 34434 6789999999999 57799999997 499999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCCCCccC-CCCCCCcccccccccccCCcCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 036551 147 FSPFAMPSPNGIVEASGNTPGSMEA-DGKPSDAKEKLPIKRSKGSLGSLNMITGKNNDLGKASGASANGAYSKSAESGSE 225 (453)
Q Consensus 147 ~~~~~~~sp~~~~~~~~~tp~s~E~-~~Kss~~kdk~~~Kk~Kg~~Gsl~m~~Gk~~~~gk~~g~s~n~~~SqS~esgse 225 (453)
|+++++++ .++.++|++++|+ ++|++++|||+++||||||||.|+|+|||++. +|++++++|++.|||+||++|
T Consensus 101 ~~~~~~~s----~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~-gk~~~~s~n~~~Sqs~eSgse 175 (189)
T PF07777_consen 101 FSPYAMPS----PETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGES-GKTSGSSANDGSSQSSESGSE 175 (189)
T ss_pred CCCccccc----ccccCCCCcccccccccCcCccccccccccccccccceeeccCCcc-CccccCCCCCccCcccccccc
Confidence 99999987 3455789999999 59999999999999999999878898886655 999999999999999999999
Q ss_pred CCCCCCCCCccCCC
Q 036551 226 GTSEGSDANSQNGS 239 (453)
Q Consensus 226 gSSdgSD~Ns~~~s 239 (453)
|||||||+|+++++
T Consensus 176 gSSdgSD~Nt~~~~ 189 (189)
T PF07777_consen 176 GSSDGSDGNTNNDS 189 (189)
T ss_pred ccccCcCccccCCC
Confidence 99999999998764
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.44 E-value=5.2e-13 Score=104.75 Aligned_cols=63 Identities=43% Similarity=0.690 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAEN 411 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN 411 (453)
|++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..||
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466789999999999999999999999999999999999999999999999999999999887
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.36 E-value=3.2e-12 Score=100.43 Aligned_cols=62 Identities=47% Similarity=0.721 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 351 ELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENA 412 (453)
Q Consensus 351 ElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~ 412 (453)
+.|+.+|+++||+||++||.||++|+++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34788999999999999999999999999999999999999999999998777777776653
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.32 E-value=4.2e-12 Score=126.42 Aligned_cols=64 Identities=30% Similarity=0.359 Sum_probs=58.6
Q ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 342 SQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYE 405 (453)
Q Consensus 342 se~~l~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~ 405 (453)
+..-..||.-+||+-|++||||+||.||+|||+|+.+||.||..||.+|..|-+||..|++-|.
T Consensus 280 sp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 280 SPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred CCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 3444678999999999999999999999999999999999999999999999999999988654
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.16 E-value=1e-10 Score=114.25 Aligned_cols=73 Identities=38% Similarity=0.439 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 351 ELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 351 ElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
|+|-+|||++||++|+-+|.|||+++++||.++.+|+.||+.|+.|++.|+++.+.|..+|.+|..+|..+.+
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998886654
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.16 E-value=5.8e-11 Score=125.68 Aligned_cols=70 Identities=39% Similarity=0.479 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 347 QDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 347 ~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
.|.+-.||+.||++|||||..||+|||+|++.||.+++.|.+||+.|+.|+..|++++..|..||..|+-
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 4889999999999999999999999999999999999999999999999999999999999999998863
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.13 E-value=7.9e-11 Score=123.08 Aligned_cols=77 Identities=34% Similarity=0.427 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 347 QDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 347 ~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
-+|+.+||.|||++|++||+.||+|||+|++.||.+|....+||++|+++++.|..++..|..+.+.|...+....-
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc
Confidence 47899999999999999999999999999999999999999999999999999777777777777776666655543
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.06 E-value=1e-09 Score=83.96 Aligned_cols=51 Identities=49% Similarity=0.717 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 352 lKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
.++++|+ +||+||++||.||++++++|+.+|..|+.+|..|..++..|+.+
T Consensus 4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777 99999999999999999999999999999999999999887754
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.32 E-value=2.3e-06 Score=84.90 Aligned_cols=62 Identities=29% Similarity=0.514 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 346 LQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 346 l~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
++++...|-+|.+++||++|.+||.||-+++..||.+|..|..+|..|-.++..|++...++
T Consensus 199 ~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~ 260 (279)
T KOG0837|consen 199 MEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAEL 260 (279)
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45666677778899999999999999999999999999999999999999999877664443
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.25 E-value=1.6e-08 Score=85.03 Aligned_cols=67 Identities=31% Similarity=0.478 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 348 DERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 348 DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
+..++|..||+.+||.+|+.||.||.+++++|+.++..|+.+...|..++..++.+++.+..++..|
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999999888888887777777766665555554444
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.89 E-value=7.2e-05 Score=75.40 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=43.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
|.++.|..||-|.|+||+++.|.|+.+++.|+++|.+|+.+++.|..|+..|
T Consensus 230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777789999999999999999999999999999998888855554433
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.87 E-value=4.7e-05 Score=75.51 Aligned_cols=55 Identities=33% Similarity=0.586 Sum_probs=46.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
..|+.+|-+|+||||.+.+...+++..||..|++||+.|+.++.+|+.++..|+.
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455589999999999999999999999999999999999999886666544443
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.25 E-value=0.0025 Score=58.13 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 351 ELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 351 ElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.+|..||-++||=-|+-||-|+-..-++||.+-..|..|...|+.+++. +..|...|+.+...+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~-------~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSR-------LRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4688889999999999999999988777766555555554444444444 5555555555554443
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.38 E-value=0.0065 Score=66.71 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=51.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
+-.||+=|||.||++||.||-.-+..||.+|+.|+.|-..|..|-..+...+..+..+...|-
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY 552 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999888888777776666666665555553
No 15
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.26 E-value=0.016 Score=50.92 Aligned_cols=50 Identities=32% Similarity=0.434 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
..+.+|++++..|-.+...|+.++..|-+++..|+.||..||++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999998865
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.08 E-value=0.072 Score=51.59 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
..++.++++++.+.+|+.+|+.|++++..++.+.+.|+.||..++..+.
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777788888888888888888888888888888888876554
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.86 E-value=0.034 Score=49.33 Aligned_cols=50 Identities=30% Similarity=0.425 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
..+..|++++..|-.+...|+..+..|-+++..|+.||.-||++|..+..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999999999999999999999999998743
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.48 E-value=0.067 Score=44.18 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
++.||.+|..+-..+..|+.++..|+++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333333333
No 19
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.40 E-value=0.11 Score=49.03 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=60.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 036551 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDE 427 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~i 427 (453)
++.+.....+..-+.-......++.+++.-++.|..|...|.-++..+.+++.+|+.||..|-+++...-++++-
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe 190 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAE 190 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666777888899999999999999999999999999999999999999998876655543
No 20
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=95.04 E-value=0.1 Score=44.08 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
++|.+++..|+.....|..++...+++|++|..||..|..-|..|.....
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~ 68 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSS 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67778888999999999999999999999999999999999988865433
No 21
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=0.09 Score=43.93 Aligned_cols=43 Identities=37% Similarity=0.425 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
-+.-|+.+|++|+.+|+.|..+.+.++...+.|+.||.+|+++
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888888888877754
No 22
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.95 E-value=0.11 Score=56.04 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
...++||++++.|+.|.+.|..+.+.+++++++|+.||..|++++..+..
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 37789999999999999999999999999999999999999999965433
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.82 E-value=0.32 Score=47.22 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
-+++..+|+++++.++.+...|.++++.|+++++.+..|+..|+.++..+..
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478889999999999999999999999999999999999999999988764
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.73 E-value=0.13 Score=42.11 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|..+
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666555555443
No 25
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.70 E-value=0.11 Score=49.17 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
...|..||..|+.++..|+++++.|+.||..|..++..+.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666655443
No 26
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.69 E-value=0.15 Score=41.64 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+..|+.+|+.|=...+.|+.++..|+++...+..|+..|.++...-+.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~ 49 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQ 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999998876544
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.55 E-value=0.17 Score=41.75 Aligned_cols=48 Identities=31% Similarity=0.432 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
..+.-|+.+++.|+.+|..|..+...|++++++|..|-.....+|..+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666655544
No 28
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.26 E-value=0.18 Score=45.10 Aligned_cols=47 Identities=32% Similarity=0.464 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
..+..|++++-+|-++...|++.+..|-+++..|+.||..||++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46788999999999999999999999999999999999999999998
No 29
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=93.81 E-value=0.0025 Score=66.38 Aligned_cols=61 Identities=28% Similarity=0.391 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 036551 348 DERELKRQRRKQSNRESARR---SRLRKQAECDELAQRADALK-EENASLRSEVTRIRNEYEQLL 408 (453)
Q Consensus 348 DErElKReRRKqsNRESARR---SR~RKqaelEeLE~rVe~Le-~EN~~Lr~el~~Lkee~~~L~ 408 (453)
.|.+.||..|+++|+.+|.+ +|.|++....+|+.+|+.|+ .+|..|..+++.|+.+.+.|+
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~ 213 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE 213 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence 57788899999999999999 99999999999999999999 999887777777555544443
No 30
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.73 E-value=0.26 Score=41.74 Aligned_cols=45 Identities=36% Similarity=0.409 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
..+.-|+.+|++|+.+|..|..++..++.....|..||..|+++-
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345567778888888888888887776666666666666665543
No 31
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=93.46 E-value=1.3 Score=37.82 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|.-++|..+++.+=|++=..|.-+.....+|+.+++.|......|-.+|.....++.+|+.-|.++..+|...
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999988888888888999999999999999999999999999999999999999988754
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=93.40 E-value=0.4 Score=38.80 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
.+++++||.++..++.-...|...+.....++..|+.+...|..+|..+...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3678999999999999999999999999999999999999999999998743
No 33
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.32 E-value=0.15 Score=38.68 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 386 LKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 386 Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|+.+...|+.....|+.+++.|..||..|+++|..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 34
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=93.29 E-value=0.19 Score=50.56 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCC
Q 036551 382 RADALKEENASLRSEVTRIRNEYE----QLLAENASLKERLGEIP 422 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~----~L~sEN~~Lr~qL~~L~ 422 (453)
.+..|.+||..|++|+..|+++.+ .|+.||++||+.|..-.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 445566777777777665544333 48999999999887653
No 35
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=93.25 E-value=0.65 Score=46.72 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
..++.+|+.+-+.|..||+.|+.....|-.+.++|..+...|+++|.++.++.
T Consensus 96 e~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 96 EYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 34678999999999999999999999999999999999999999999986643
No 36
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.11 E-value=0.5 Score=47.30 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
=+..++++..+.+.|..+|..|..++..+++++..|+.||+.|.+++..+.+.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~e 192 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGE 192 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence 34456666666667777777777777777788888888888888888777653
No 37
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.07 E-value=0.61 Score=45.95 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.+.+.++++.+.+++.++.++..|+++.+.+..+++.|..||+.|++++..-
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 4445566677777777778888888888899999999999999999888653
No 38
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=0.46 Score=39.85 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
=|-++++|..+-..|..|.+.++.....|..+.++|..|.....++|..|-|+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999999999999998888888877665
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.43 E-value=0.54 Score=35.69 Aligned_cols=42 Identities=40% Similarity=0.521 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
.||...+.|++.-..|+.+...|.++.+.|.+|...|+.+|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467777778888888888888888888888888888888765
No 40
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=91.81 E-value=0.68 Score=45.46 Aligned_cols=40 Identities=40% Similarity=0.453 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCC
Q 036551 383 ADALKEENASLRSEVTRIRNEY---EQLLAENASLKERLGEIP 422 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~---~~L~sEN~~Lr~qL~~L~ 422 (453)
...|.+||..|++|+..|+.+. +.|+.||.+|++.|....
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3344455555555554444443 378999999999887544
No 41
>PRK02119 hypothetical protein; Provisional
Probab=91.73 E-value=1.1 Score=36.99 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+++++||.++..++.-...|-..+....+++..|+.+.+.|..+|..+..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999999999999999999999999999999988753
No 42
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.70 E-value=2.2 Score=41.13 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 366 RRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 366 RRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
...-...+.++++++.+++.|+.+...++.++..+++++.++..++...+..|.
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666666666666666666666666665555
No 43
>PRK04325 hypothetical protein; Provisional
Probab=91.69 E-value=1.1 Score=37.08 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+++++||.++..++.-...|-..+.....++..|+.+.+.|..+|..+..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34899999999999999999999999999999999999999999988753
No 44
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.69 E-value=1.1 Score=36.96 Aligned_cols=51 Identities=24% Similarity=0.137 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+++.+||.++..++.-...|-+.+.....++..|..+.+.|..+|..+..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367899999999999999999999999999999999999999999988764
No 45
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.68 E-value=0.61 Score=39.60 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
|.++++|..+-..|..+++.++..-..|.+++++|..|-....++|..|-|
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766666777777777776666666665544
No 46
>smart00338 BRLZ basic region leucin zipper.
Probab=91.61 E-value=0.74 Score=36.21 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 380 AQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 380 E~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
...+..|+.+...|..++..|..++..|..|+..|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888888888887764
No 47
>PRK00736 hypothetical protein; Provisional
Probab=91.60 E-value=1.2 Score=36.35 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+++++||.++..++.-...|-..+.....++..|+.+.+.|..+|..+..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45999999999999999999999999999999999999999999988753
No 48
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.53 E-value=2.6 Score=38.98 Aligned_cols=69 Identities=25% Similarity=0.282 Sum_probs=57.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
....+.|++.+-+--.-++++++.|+.++..+..+...|..++..|+.+...|..+....+.+|..|..
T Consensus 33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888889999999999999999999999999888888888888888888777777653
No 49
>PRK00295 hypothetical protein; Provisional
Probab=91.49 E-value=1.1 Score=36.42 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+++++||.++..++.-...|...+.....++..|+.+.+.|..+|..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999999998875
No 50
>PRK04406 hypothetical protein; Provisional
Probab=91.24 E-value=1.5 Score=36.40 Aligned_cols=50 Identities=4% Similarity=0.060 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+++++||.++..++.-...|...+.....++..|+.+.+.|..+|..+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57889999999999999999999999999999999999999999987653
No 51
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.15 E-value=1 Score=39.41 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDER 428 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is 428 (453)
.+.++++++++++++.|+.+|..|+.++..|+...+-++ +..|++|......+.+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE---e~AR~~Lg~vk~gEivy 85 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE---ERARNELGMVKPGETFY 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH---HHHHHHcCCCCCCCEEE
Confidence 455667788888888888888888888888876433232 23677787777766543
No 52
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.92 E-value=3.4 Score=37.25 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
.|-...|+.......++...++.|+..++.|+.++..+..++..+..+...|..++..+..
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555544444444444444433
No 53
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.79 E-value=0.92 Score=41.73 Aligned_cols=53 Identities=34% Similarity=0.411 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 372 KQAECDELAQRADALKEENASLRSEV--TRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el--~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
-++++.+|+.++..|+.|...|...+ ..|..++..|..|+..|..+|..+...
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777777777777664 567788888888888888888888763
No 54
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.77 E-value=1.3 Score=36.26 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 375 ECDELAQRADALKEENASLR-------SEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr-------~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+++.|..+++..+.+|..|. .++...-.++.+|..||..|+.+|....
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444 4456666777777888888877766543
No 55
>PRK11637 AmiB activator; Provisional
Probab=90.65 E-value=2.5 Score=44.26 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 366 RRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 366 RRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+.....-+.+++.|+.+++.++.+...+..++..+..++..|+.+...|+.+|...
T Consensus 67 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 67 QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444556666666666666666666666666666666555555555554444
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.60 E-value=1.8 Score=48.91 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
-.|.+.++..+|+.|...|+.++....+++..|+.|..+|+..
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788999999999999999999999999999999888875
No 57
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.26 E-value=0.81 Score=40.40 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 381 QRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 381 ~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.++..|+.....|..++..|+.+...|..||..|+.+...|+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 58
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.52 E-value=1.6 Score=34.24 Aligned_cols=36 Identities=36% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 382 RADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
.++.|+.+...|..++..|+.++..|..++..|+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555554443
No 59
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=89.48 E-value=0.47 Score=45.57 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=34.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAE 410 (453)
Q Consensus 352 lKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sE 410 (453)
-.|.+|+++++ -+..++++++|+.+|+.|+.+...++..+.+|-+++.+.+.|
T Consensus 90 y~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~e 142 (181)
T KOG3335|consen 90 YWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESE 142 (181)
T ss_pred hHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 34566666555 466778888999999888887666666666655444444333
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.29 E-value=0.8 Score=49.62 Aligned_cols=54 Identities=26% Similarity=0.451 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 366 RRSRLRKQAECDELAQRAD-ALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 366 RRSR~RKqaelEeLE~rVe-~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+-.|+||++ ..+.++++ .|+.+.++|..+.++|+++.++|......|..+|..+
T Consensus 88 eN~~L~~r~--~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 88 ENERLQKRE--QSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHhh--hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444443 44444443 3556777788888888888888888888888888554
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.13 E-value=5.1 Score=39.15 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 366 RRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 366 RRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
...+..-.++++.|+.+++.|+..|..|...+..++++..+|..+...+...
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777777777777777777777766666666555443
No 62
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=88.99 E-value=0.63 Score=44.14 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTR---IRNEYEQLLAENASLKERL 418 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~---Lkee~~~L~sEN~~Lr~qL 418 (453)
||++|.++.+-=.+|.-|..||++ |+++++.|+.|.+.||++|
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888777777777777643 4555555555555555555
No 63
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.94 E-value=2.6 Score=48.54 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 396 EVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 396 el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
.+-.|+.+...|..|...|..++..|.++
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qqls~k 459 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQLSGK 459 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555666666666666555543
No 64
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.87 E-value=5.2 Score=39.08 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
++..+|..++..|+.|...|...+..|......++.+...|..++..+.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555443
No 65
>PRK11637 AmiB activator; Provisional
Probab=88.83 E-value=3.6 Score=43.11 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
-...++.++.++..++.+...+..++..|++++..++.+...++..|..
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666665555554433
No 66
>PRK00846 hypothetical protein; Provisional
Probab=88.83 E-value=2.5 Score=35.64 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+++++||.++...+.-...|-..+.....++..|+.+.+.|..+|.++..
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999999999999999999998873
No 67
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.54 E-value=1.5 Score=43.83 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.|||+++..+.. ++..|+.++++|+++|-.|=+++.-++
T Consensus 96 ~ELE~elr~~~~-------~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 96 AELEEELRKQQQ-------TISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555444 555555555668888888888877664
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.00 E-value=3.7 Score=37.05 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDERSVRN 432 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is~~rn 432 (453)
.+++...-+.....-.|=+..+++++.++..++.+-..|..++..+...+..+..|...|+..+.....+.....-|+
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkk 138 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKK 138 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444434444444455555555555555555555555555555555555555555555555544444443333
No 69
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.66 E-value=5.5 Score=37.88 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
.+.+.++++|+.+++.|+.||..|..++..+++.|..|..-...-|
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777777777777766655444333
No 70
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.45 E-value=5.4 Score=41.51 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDERSVRN 432 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is~~rn 432 (453)
+-..|.+.+.+.+.+|..|..++..|++++..+.-++..||+++...+..+.-...++
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~ 123 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARH 123 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccc
Confidence 3467888899999999999999999999999999999999999999877654333443
No 71
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.39 E-value=1.9 Score=48.23 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
++..|+.+|+.|+.||+.|+.++.+|+.+++.|+++...++.++.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777766666554
No 72
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=87.02 E-value=3.7 Score=38.01 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 393 LRSEVTRIRNEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 393 Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
|..+...|.+++++|..||+.++.++..+..+.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556677777777777665543
No 73
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.80 E-value=2.2 Score=42.83 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 380 AQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 380 E~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+.+++.++.+...|..++++|.+.+..|.-|...|+.++.+|.
T Consensus 162 e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 162 EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3333333333333333344444444444444455555544443
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.77 E-value=2.5 Score=38.77 Aligned_cols=47 Identities=30% Similarity=0.448 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.+++|+.++..|+.+|..+-.+|..|..++..|+.+...|..+|..+
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544444444444444444444444444444444433
No 75
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=86.66 E-value=1.3 Score=34.89 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 036551 400 IRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 400 Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.++++.+|+.||..|+++|..+
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665543
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.53 E-value=7.4 Score=38.00 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
..|..++..|+.||..|..+...|+.++..|..++..|+.+|-
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLC 140 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHH
Confidence 5677777888888888888888888888888778888877773
No 77
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.37 E-value=15 Score=32.85 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 388 EENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 388 ~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.+-..|..++..++..|..|..+|..|..+|..+
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344567777788888888888888888888765
No 78
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.21 E-value=2.1 Score=38.15 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
+++++|...|..|..||..|+-|+..|++.+.++
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555544
No 79
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.02 E-value=6.9 Score=43.41 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 036551 377 DELAQRADALK 387 (453)
Q Consensus 377 EeLE~rVe~Le 387 (453)
+.|+.+.+.|.
T Consensus 188 e~L~~~~kel~ 198 (546)
T PF07888_consen 188 EQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 80
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=86.01 E-value=0.41 Score=41.47 Aligned_cols=50 Identities=32% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+|+.|...+..|..+|..|+.++..|..++..+..++..|+..|.....
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~ 74 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQE 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhh
Confidence 58899999999999999999999999999999999888888888765444
No 81
>PRK12704 phosphodiesterase; Provisional
Probab=85.77 E-value=7 Score=42.79 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 396 EVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 396 el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+++.++++++.+..+...-.+++..|.
T Consensus 125 eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 125 ELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333333334444333333333333333
No 82
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.57 E-value=1.2 Score=35.91 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 389 ENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 389 EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
|...|+.+|..|.+++.+|+.||..||..+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455666667777777778888888887643
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.31 E-value=5.2 Score=43.03 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=53.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
||++-.+++=+.-.++....+.+...|+.+++.|+.++..|..++........++...++.+...|..+..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444455555555555666677778888888888888888888888888888888888888777777776654
No 84
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=85.24 E-value=4.9 Score=40.37 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=38.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 358 KQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 358 KqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
..+-|..++.--..-+.++.+|+.+-+.|+.++..|+.++..|+.-+..+
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666777788888888888888888888888887766554
No 85
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.17 E-value=3.1 Score=42.79 Aligned_cols=73 Identities=25% Similarity=0.243 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 349 ERELKRQRRKQSNR-----ESARRSRLRK-QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 349 ErElKReRRKqsNR-----ESARRSR~RK-qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|-|.|-.+=++.|- .++-....-- |..|++|+..+.+|..++.....++..++..+..|..|...|+++|...
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666663 3444443333 5678888888888888888888889999999999999999999998754
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.17 E-value=2.8 Score=36.67 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
..+|+++++.++.+|..|+.++..|+++.+.|..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555555555555555555554444444443
No 87
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.12 E-value=3.4 Score=41.25 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
|=+++|.|==... .+-++.+..|+.+|+.|++.|..|-+++.=|+.-
T Consensus 90 RFR~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 90 RFRQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344454433333 2334567788888888888888888877765443
No 88
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=85.05 E-value=6.7 Score=31.47 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+.+++|...|..|..+...|..++..|+.+......|-..-.++|-.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888888888777777777776666666644
No 89
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=85.00 E-value=4.8 Score=34.84 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
|+-|-...+.+|..|+.+|..|..++..|+.+++.-+.|-..|-.
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677888888888888888888888877777666666544
No 90
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.89 E-value=9.4 Score=37.06 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 368 SRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 368 SR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
-+.||..++ +...++..|+.+=..|..++-.+...|..|+.|...|+.+......
T Consensus 163 N~~RK~~Q~-~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 163 NRERKRRQE-EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555443 3666777777777777777777888888888888888877766544
No 91
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.61 E-value=11 Score=36.27 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTRIR 401 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lk 401 (453)
+++..++.|+.+++.++.++..++.++..++
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333
No 92
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.56 E-value=5.8 Score=31.33 Aligned_cols=30 Identities=33% Similarity=0.560 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTRI 400 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~L 400 (453)
+.++++.+|+.+++.|+.+|..|..+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666665
No 93
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.49 E-value=2 Score=34.02 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
..+..+++.|+.++..|+.++..|+++.+.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.46 E-value=13 Score=38.08 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+..+..++.++...+-...-+++.++|+++-+.+-.+.+.+..++..+.++.+.|.++...+..+|..|..
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455444444444555555555545555555555555566666666666666666666666544
No 95
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=84.39 E-value=11 Score=33.78 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 036551 345 WLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEV---TRIRNEYEQLLAENASLK 415 (453)
Q Consensus 345 ~l~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el---~~Lkee~~~L~sEN~~Lr 415 (453)
-+.+||+.+.++|..+||||-+. |+.-+-....+-.-|..+|.-+..+- ..|....-+|......|.
T Consensus 47 ~MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qqqsidslsksvgklahkvdlle 116 (121)
T PF10669_consen 47 RMKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQQSIDSLSKSVGKLAHKVDLLE 116 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999998643 23333333333333666666655543 333444444444444333
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.26 E-value=7.4 Score=41.35 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAEN 411 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN 411 (453)
.|+.+++.|+.++..+..++..|.+++..+..+.
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 97
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=84.18 E-value=4.2 Score=32.50 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
+++||.++..++.....++++++.|++..+++..-.+.|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666555555554444333
No 98
>PF15294 Leu_zip: Leucine zipper
Probab=84.11 E-value=2.2 Score=43.62 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
|..++..|+.||..|+.++..+..+|.....|+..|..+|.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999876
No 99
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.02 E-value=0.81 Score=49.60 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRS 395 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~ 395 (453)
+.|..+-+.|.+||..|++
T Consensus 76 ~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 76 AKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 100
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.01 E-value=19 Score=34.78 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLL 408 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~ 408 (453)
+++....++.+.+-+.-+.+=..-+..+..++.++..|+-|+..|..++..|.++...|.
T Consensus 68 ~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666665555555556666666666666666666666666555554444
No 101
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.94 E-value=8.4 Score=38.62 Aligned_cols=52 Identities=31% Similarity=0.370 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
....++..|..++..++.+-..|..++..|..+.+.|..+...|+.++..+.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777777777766666665544
No 102
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.94 E-value=6.5 Score=42.63 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
-+.|.|+.+++.|+.||..|+..+..|+..+++|..|-..+-++|..+.-
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrl 346 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL 346 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45677788899999999999999999999998888887666666665543
No 103
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=83.92 E-value=2.4 Score=34.47 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRI 400 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~L 400 (453)
.+++.++++++.++.||..|+.|+..|
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 104
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=83.87 E-value=3.9 Score=36.00 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
.|...+..|+.++..+..+++.|+.++.++..|...|+.++
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555666666666666666666666666666666666554
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.80 E-value=3.9 Score=47.17 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccc
Q 036551 403 EYEQLLAENASLKERLGEIPVQEDERSVR 431 (453)
Q Consensus 403 e~~~L~sEN~~Lr~qL~~L~g~~~is~~r 431 (453)
.+-.|.+.+..|..+|..|..+.....+|
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qqls~k 459 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQLSGK 459 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444455555555555555544433333
No 106
>PRK00106 hypothetical protein; Provisional
Probab=83.60 E-value=9.9 Score=42.04 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 036551 396 EVTRIRNEYEQLLAEN 411 (453)
Q Consensus 396 el~~Lkee~~~L~sEN 411 (453)
+++.++++++.+..+.
T Consensus 140 eLee~~~~~~~~~~~~ 155 (535)
T PRK00106 140 HIDEREEQVEKLEEQK 155 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 107
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.46 E-value=7 Score=36.76 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 384 DALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 384 e~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
+.++.++..|..++..|.+++..|......+..++
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 44455555555555554444444443333333333
No 108
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.07 E-value=7.5 Score=38.51 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
|+++.+.+.++-..|+++++....+++.+..++..|+.+...+....|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 566666666677777777777777777777777777777777665544
No 109
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=82.77 E-value=5.2 Score=42.64 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 363 ESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 363 ESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+.|..-|+|-.+--...|..++++..|...|+.++..+.....-|..|+..|++.+..+..
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455556666565566677788888899999999999988888999999999999988865
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.65 E-value=8.8 Score=38.26 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+-+|..+++.|+.|+..|+-+++.+.-+++++....+.|-..|..
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666665555544
No 111
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.54 E-value=4.3 Score=36.30 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 393 LRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 393 Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|..++...+++..+|++||..|-+-|..|
T Consensus 75 LSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 75 LSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34444444455555555555555544444
No 112
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=82.54 E-value=2 Score=45.10 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036551 385 ALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 385 ~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
.|+.||..|++|++.|+.+.++|
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 113
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.28 E-value=13 Score=43.28 Aligned_cols=67 Identities=24% Similarity=0.223 Sum_probs=55.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 357 RKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 357 RKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
..+.+-..=+--+.+-...++.|.+.+.+|+-||..|.++++.+.+++.+|+.++..||.+|.....
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~ 720 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISS 720 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444445555666777888999999999999999999999999999999999999999999985543
No 114
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.17 E-value=12 Score=36.62 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAEC----DELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqael----EeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
|.-.+|.||-...+.++=.-+-+=-+++ ...-.++..|+..|+.|+.+++.|+.
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888777777654333322221 12223344444444444444444443
No 115
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=82.17 E-value=4.5 Score=34.82 Aligned_cols=37 Identities=32% Similarity=0.562 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCC
Q 036551 386 LKEENASLRSEVTRIRNE------YEQLLAENASLKERLGEIP 422 (453)
Q Consensus 386 Le~EN~~Lr~el~~Lkee------~~~L~sEN~~Lr~qL~~L~ 422 (453)
+..+|..|++||..|+++ ..+...||-.|++++..++
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555533 3455666666666655543
No 116
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=82.13 E-value=2.6 Score=40.24 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++.....+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~ 168 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888877777777766655544443
No 117
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.00 E-value=15 Score=40.97 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=16.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 360 SNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRI 400 (453)
Q Consensus 360 sNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~L 400 (453)
+...........-+.+++.|+.++...+.++..|..+...+
T Consensus 157 ~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 157 KENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444433333333
No 118
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.98 E-value=18 Score=34.91 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
.++.+|+.++-+|+.+.+.|..+......++.+|.++...|.+.+.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333344444444444444443
No 119
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=81.71 E-value=16 Score=34.34 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+|..+|+.|+.+|..|...+..+..+...|......|+.++..+
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence 44455555555555555444444444444544444444444443
No 120
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=81.66 E-value=0.22 Score=52.16 Aligned_cols=56 Identities=36% Similarity=0.398 Sum_probs=45.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 354 RQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 354 ReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
+.|=.++||.||-+||.|||.....|+.+.+.+..+|..|. ..+++.|..++..+.
T Consensus 286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS 341 (395)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence 35558999999999999999999999999999999999998 233444555555554
No 121
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.59 E-value=1.6 Score=35.33 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
+++|.|..++.+|+.+|..|..|+..|++.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777766654
No 122
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.57 E-value=12 Score=39.74 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.|-+.+...||.-+..++.||+.|..+++.+.++|...+.|+..|..+|.+.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 4556677778888889999999999999999999999998888887666553
No 123
>PF15058 Speriolin_N: Speriolin N terminus
Probab=81.39 E-value=3.2 Score=40.56 Aligned_cols=40 Identities=35% Similarity=0.472 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.|.|.++++.|-.||.+|++.+. |..||.+||.-|.+-+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHhhc
Confidence 46778888888889998888776 44567777776665544
No 124
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.22 E-value=28 Score=32.18 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 367 RSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 367 RSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
.-+...+++++.++..++.+.++-..|..++..+++++..++.+...+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555533333334444444444333
No 125
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.14 E-value=15 Score=35.36 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
+-.+.++.+..+-+-.+.+.+.+.+.|+.++..-+.++..|..++..|..++..|+.+...|
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~ 150 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL 150 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777777777665555555555555555555555543333
No 126
>PRK02119 hypothetical protein; Provisional
Probab=81.01 E-value=6.6 Score=32.47 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
++..|+.|+..|+.....+..-|..|.+...+...+...|+.+|..|..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888887754
No 127
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.92 E-value=16 Score=29.67 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLL 408 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~ 408 (453)
..++.++.+-+..|..|..+|..|+++.+.++
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555555555544443
No 128
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.91 E-value=8.7 Score=36.00 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 386 LKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 386 Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
++.++..+.+|++.|++++++.+.|...|+.|...+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777766554
No 129
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=80.48 E-value=6.2 Score=34.45 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADAL--KEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 374 aelEeLE~rVe~L--e~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
.++..||.+++.| ..+...|+-++..++.++..|..+.+.+.
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455555554 44444444444444444444444444443
No 130
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.41 E-value=10 Score=35.47 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAE 410 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sE 410 (453)
++.+.++++++.|+.|......+++.|++|++.|..|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555556666665555544
No 131
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.15 E-value=19 Score=38.13 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 348 DERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 348 DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
++..+++.++.+-+|..|-.+-+ .++-++|..--++|+.+++.|+++...|...-..|+.++.+
T Consensus 215 ~~eklR~r~eeeme~~~aeq~sl---------kRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESL---------KRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444555555555555444444 44444444444444444444444444444444444444433
No 132
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.15 E-value=14 Score=41.96 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=11.5
Q ss_pred hHHHHHHHHH-HHHhHHHHHHHHHH
Q 036551 348 DERELKRQRR-KQSNRESARRSRLR 371 (453)
Q Consensus 348 DErElKReRR-KqsNRESARRSR~R 371 (453)
-|+|.||.|. ++.-|..=+..|.+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3666666553 34444444444443
No 133
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.95 E-value=9.8 Score=42.27 Aligned_cols=62 Identities=27% Similarity=0.421 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 363 ESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 363 ESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+.+.+.|..-++.+.++...+..|++|...++..+..|.++...|..||..|+..|..+..+
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34444455555666777778888888888888888888888888888888888888877653
No 134
>PRK04406 hypothetical protein; Provisional
Probab=79.71 E-value=8.1 Score=32.19 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
++.|+.|+..|+.....+..-|..|.+...+...+...|+.+|..|..+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999998888888888888888888543
No 135
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.62 E-value=8 Score=32.87 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 374 AECDELAQRADALK-----EENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 374 aelEeLE~rVe~Le-----~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
.++..||++++.-- ..++.|..++..|+.+...|..||..|+.+|.+
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666666554332 366678888899999999999999999988753
No 136
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.61 E-value=18 Score=34.55 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 036551 400 IRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 400 Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
..++++.|..+|..|+.+|..
T Consensus 168 ~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666654
No 137
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.49 E-value=4.6 Score=32.25 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
++..|+..+..+++||+.|+..++.+.+-..+|..
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666655543
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.40 E-value=18 Score=34.21 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
+..+.+|+.++..+..-|+.|..|+..|+-++..++..+..|+.+
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 139
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.29 E-value=13 Score=31.20 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+++.+||.++..=+.-...|...+...+...+++..+.+.|-+++.++...
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 567889999988888888888888888888999999999999999888754
No 140
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.22 E-value=4.3 Score=42.08 Aligned_cols=41 Identities=29% Similarity=0.518 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
++|..+++.|+++|..|+.++..++.+|..|..||+.||+.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 141
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.16 E-value=15 Score=37.61 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
.+++.|..++..+..+...++.++..|+.++..+..+...+.+++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444444444444444444443333333
No 142
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=78.99 E-value=6.2 Score=43.85 Aligned_cols=66 Identities=29% Similarity=0.348 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 347 QDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 347 ~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.-+.+.|-.+|.| |..|.|. -.++-++.+ +..-..|..+|+.|.++|+.|+.||..||.+|..+..
T Consensus 272 ~~~~d~kv~krqQ------RmIKNRe---sA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 272 NVGSDIKVLKRQQ------RMIKNRE---SACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred CCccCHHHHHHHH------HHHhhHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3466777766665 2233332 222222111 2234567778888888888888888888888887755
No 143
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.94 E-value=7.1 Score=39.73 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCC
Q 036551 365 ARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLL----AENASLKERLGEIP 422 (453)
Q Consensus 365 ARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~----sEN~~Lr~qL~~L~ 422 (453)
++.-=......++++..+++.++.++..+..++..|+.++..|. .++..|+.++..++
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455556666666666666666666666666666655443 33444445544443
No 144
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.87 E-value=26 Score=35.91 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 360 SNRESARRSRLRK----QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 360 sNRESARRSR~RK----qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
..|+..+.-..|| +.+++.++.++...+++...++.++...+.++..|+.+-..|...|.
T Consensus 189 ~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 189 ETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 67777777777777788888877777777777777777666655443
No 145
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.86 E-value=21 Score=35.93 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=33.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIR 401 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lk 401 (453)
.++.+.-.+.+++.=.-++.++++|+.+|..++.+.+.+++++..++
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777778888888888888887777777665554
No 146
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.60 E-value=28 Score=32.17 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
..+.+++.++.....+.+++..|..++.+++.+-..++..+..+
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555544444
No 147
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.46 E-value=11 Score=31.21 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
+..|+..+..+..++..|+.+.+.+..+...|+..+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444
No 148
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=78.35 E-value=1.9 Score=32.78 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 384 DALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 384 e~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
.+|-+.|+.|..++..|..++.+|..||-.||+++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34445666667777777777777777777777665
No 149
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.30 E-value=16 Score=40.63 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 353 KRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
++...+++-|..++..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...+|
T Consensus 127 ~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 127 KKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333344455555544333223334444444444444444444444444444443333333333
No 150
>PRK14127 cell division protein GpsB; Provisional
Probab=78.11 E-value=5.3 Score=35.68 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENA 412 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~ 412 (453)
+.|+++...++.|..||..|+.++..|++++..+..+..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666666666667777666666665555555554444
No 151
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=77.91 E-value=3.5 Score=35.44 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
|+.+++.|..+++.++.+|..|..+|..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555677777777777777777776666543
No 152
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=77.84 E-value=6.2 Score=35.59 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+|=.+|..|+.....|..++..|++....|..||..|+-+...|+.
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 3445678888888888888888888888888888888877776654
No 153
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.25 E-value=5.6 Score=41.23 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+-+.+--.+......+...|..+|..-.+++.....|...|..+|..+...
T Consensus 199 qLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r 249 (306)
T PF04849_consen 199 QLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQR 249 (306)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555666677888888888888888888888888877654
No 154
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=77.08 E-value=8.2 Score=35.51 Aligned_cols=46 Identities=28% Similarity=0.358 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
+..+...|.-++.|+.|...=..||..|+++++.+...|..|..+|
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4455666777788888888888888888888888888888887664
No 155
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.86 E-value=6.6 Score=37.56 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 382 RADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
+.+.|...|.-|+.+++..+..++.|..++..|
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl 107 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKL 107 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333333333333
No 156
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.84 E-value=9.1 Score=37.40 Aligned_cols=51 Identities=31% Similarity=0.469 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+++++|..-+..|+.+|..|.++...+..+...|.++...|.++...+..
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~ 116 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLA 116 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456777777777777777666666666665555555555555555444433
No 157
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=76.72 E-value=17 Score=37.53 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=34.1
Q ss_pred HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 352 LKRQRRKQ---SNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 352 lKReRRKq---sNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
.||+.||. +=|+--|+-++-=.-+|+.|+.+-++|+.+-++|..||.-|++-+...
T Consensus 230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666 333333333444445667777777777777777777777776655443
No 158
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=76.71 E-value=24 Score=31.43 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYE 405 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~ 405 (453)
.+-.++++++.|...|+.|.+++..|+++..
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777666655
No 159
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=76.55 E-value=7.9 Score=32.24 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
+.+..++.|+.||=.|+-+|--|.+.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~ 29 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEER 29 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34444455555554444444444433
No 160
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.54 E-value=38 Score=32.71 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
+..+..++..++.+...|+-+.+.|.+++.+|..|-..|..+
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 161
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.38 E-value=8.5 Score=31.17 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
|+.++..|+.....+..-|+.|.+...+...+...|+.+|..|..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666655543
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.16 E-value=14 Score=41.58 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 359 QSNRESARRSRLRK-QAECDELAQRADALKEENASLRSEVTRIR 401 (453)
Q Consensus 359 qsNRESARRSR~RK-qaelEeLE~rVe~Le~EN~~Lr~el~~Lk 401 (453)
..+|..+.+.+..+ +.+..+|+.++++|++++..|..++..++
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433322 23455555555555555555555555544
No 163
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.12 E-value=19 Score=42.80 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 388 EENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 388 ~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.+..++..++..|+++.++|+.++.+|++++..+.
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555666666666666665555543
No 164
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=76.02 E-value=0.85 Score=45.36 Aligned_cols=43 Identities=35% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
-|..+||...++.+|+.-...|..+++.|++++.+|.+||..|
T Consensus 120 dKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 120 DKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888888888888888
No 165
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.94 E-value=22 Score=41.99 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 391 ASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 391 ~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
..|+.++..|+++++.|+.+...||+++.+-
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666666666666666666666666554
No 166
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=75.24 E-value=52 Score=28.20 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.++...++..+..=..|...+..|++++..|..|...-..++-.+....+.|..|+..|+..+..-
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 345556666666677888888889998888888888888888888888888888888887776543
No 167
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=75.21 E-value=6 Score=44.46 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
++.+||.+-++|..|..++..+++.|++.+.+-+.|...|+.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 445555555555555555555555554444444444444443
No 168
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.10 E-value=5.8 Score=43.27 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+++++.|+++++.|.++++.|.++|+.|+.++..|+.+...++.++....+.
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~~~~ 133 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATGE 133 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Confidence 4566777888888888888899999999999999998888888877665443
No 169
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=75.07 E-value=9.1 Score=39.02 Aligned_cols=36 Identities=39% Similarity=0.711 Sum_probs=17.7
Q ss_pred CCCCCCCCCcccc-CCC---CcCCCCCCCCCCCCCCCCCC
Q 036551 117 PYGTPPHPYVAMY-PHG---GIYAHPSIPPGSYPFSPFAM 152 (453)
Q Consensus 117 PYGtP~~PY~A~Y-p~G---gvYAHP~mp~gs~P~~~~~~ 152 (453)
|-|-||-|-+.+| |+| |.|.-|-||++.-|-.+.+|
T Consensus 162 p~g~pp~~~pgv~mp~~g~pg~~~pp~mpi~~g~p~~~p~ 201 (341)
T KOG2893|consen 162 PRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPM 201 (341)
T ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcCcCCCCCCCCCCC
Confidence 3555544444433 333 35666667665444443333
No 170
>PRK03918 chromosome segregation protein; Provisional
Probab=74.96 E-value=27 Score=39.42 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=9.4
Q ss_pred cccccccCCCCCCC
Q 036551 194 LNMITGKNNDLGKA 207 (453)
Q Consensus 194 l~m~~Gk~~~~gk~ 207 (453)
+++++|.|+. ||+
T Consensus 25 ~~~i~G~nG~-GKS 37 (880)
T PRK03918 25 INLIIGQNGS-GKS 37 (880)
T ss_pred cEEEEcCCCC-CHH
Confidence 7888887766 664
No 171
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=74.91 E-value=56 Score=29.89 Aligned_cols=53 Identities=28% Similarity=0.324 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 372 KQAECDELAQRADALKEEN-ASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN-~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
.+..+..|+...+.|..|. ..++.++.-|---+..|...+..+|.+|..+-..
T Consensus 60 ~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~e 113 (136)
T PF04871_consen 60 LASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEE 113 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 3333444444444444443 4455555555566667788889999999988653
No 172
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=74.76 E-value=8.9 Score=39.90 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.|..++..|+.++..|+.++..|..+...+..+...|++++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444444444445555555555555555555555555554443
No 173
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=74.56 E-value=28 Score=32.92 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 350 RELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEY 404 (453)
Q Consensus 350 rElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~ 404 (453)
+-.+..+++++.|..|+-.=.+|-.++.+|..++.+.+.....+...|..|..+.
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m 135 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQM 135 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778889999999999999999999988877777766666666655443
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.49 E-value=18 Score=40.41 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+.|+.+++.+-+.++.....|..|+..-.++++.|..+|..|+.+|...
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888888888888888888888888877654
No 175
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=74.41 E-value=11 Score=30.65 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 036551 388 EENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDER 428 (453)
Q Consensus 388 ~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is 428 (453)
.+...+..+++.++++.++++.||..|+.++..+..++.|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe 64 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIE 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 44556666777777777777777888877777777665544
No 176
>PRK09039 hypothetical protein; Validated
Probab=74.26 E-value=24 Score=36.65 Aligned_cols=39 Identities=10% Similarity=0.307 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|..|+++...|+.++..|..++..++.+...++.+|..+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333333333333
No 177
>PRK04325 hypothetical protein; Provisional
Probab=74.14 E-value=13 Score=30.79 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+..++.++..|+.....+..-|+.|.+.+.+...+...|+.+|..|..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777777777777766643
No 178
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.85 E-value=22 Score=42.33 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 358 KQSNRESARRSRLRK------------QAECDELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 358 KqsNRESARRSR~RK------------qaelEeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
+.-+|..|....++. .++|++|+..+-.|+.||..|..+|+.|+.
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455677777666554 468899999999999999999999998886
No 179
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.60 E-value=15 Score=42.86 Aligned_cols=87 Identities=24% Similarity=0.236 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH--------------HHH
Q 036551 348 DERELKRQRRKQSNRESARRSRLRKQA---------------ECDELAQRADALKEENASLRS--------------EVT 398 (453)
Q Consensus 348 DErElKReRRKqsNRESARRSR~RKqa---------------elEeLE~rVe~Le~EN~~Lr~--------------el~ 398 (453)
|-++.+++-|.+.|+-.-+.+-+-|-+ ++|++..++..|+.+...-.. +|.
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt 179 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELN 179 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHh
Confidence 446778888988888766655443322 333333333333333322211 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc
Q 036551 399 RIRNEYEQLLAENASLKERLGEIPVQEDERSVRNDQ 434 (453)
Q Consensus 399 ~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is~~rn~q 434 (453)
.+..++..+.+||.+++..+..+..+.+..++-|++
T Consensus 180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~ 215 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQ 215 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 455667777777777776666665555544444444
No 180
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=73.52 E-value=11 Score=39.84 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
|+.++..|+.+|..|..++..++++..+++.|+..|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555553
No 181
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.45 E-value=14 Score=30.42 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+|+.|+..|+.....+..-|..|.+...+...+...|+.+|..|..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777777777777776644
No 182
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=73.37 E-value=7.6 Score=35.17 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRI 400 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~L 400 (453)
+++|-|..++.+|+..|..|..|+..|
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444443
No 183
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=73.36 E-value=8.8 Score=32.18 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 387 KEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 387 e~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
..+...+..+++.++.+..+|..||..|+-++..+..+..
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~r 73 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSR 73 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 3444555555666666666666666666666666655444
No 184
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=73.33 E-value=44 Score=30.46 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDER 428 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is 428 (453)
.||..++..|+.|+..+..-...|...+.-|+-.+...|.++..+....+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~ 79 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 4566677777777777777677777777778888888888888876655543
No 185
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=73.28 E-value=5.7 Score=36.09 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTR 399 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~ 399 (453)
|..-+|+|+.++..|+-||..|+.++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456788888888888888888887654
No 186
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=73.24 E-value=33 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 036551 379 LAQRADALKEENAS 392 (453)
Q Consensus 379 LE~rVe~Le~EN~~ 392 (453)
|+.+...|..++..
T Consensus 37 L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 37 LEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 187
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.94 E-value=7.7 Score=39.47 Aligned_cols=49 Identities=27% Similarity=0.382 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
=+.+++.|..+|+.+..+...++.++.++++++.+|..|...|++.|.+
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666554
No 188
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.89 E-value=13 Score=32.74 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAE 410 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sE 410 (453)
++.|+.+++.+..++..|+.++..+.+++..|..|
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555555544
No 189
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=72.87 E-value=10 Score=38.35 Aligned_cols=46 Identities=35% Similarity=0.351 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+..+|+.+-+.|+.++..|. .+..+.+.|+.||..||+.|......
T Consensus 67 ~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 67 SLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 33444444444444443333 34556788999999999998876665
No 190
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=72.57 E-value=45 Score=32.48 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
...|-.-...+..||..|+.++..|.+++..|...+..|..+-..|
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L 196 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQL 196 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667788999999999999999999998888887765544
No 191
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.45 E-value=34 Score=30.81 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 359 QSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLL 408 (453)
Q Consensus 359 qsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~ 408 (453)
+.-.|..+-|+..=..+-++|+..+..|+.+|..+..++..|+.++..+.
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333334444555555555555555444444444444433
No 192
>PRK12704 phosphodiesterase; Provisional
Probab=72.40 E-value=37 Score=37.37 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 036551 379 LAQRADALK 387 (453)
Q Consensus 379 LE~rVe~Le 387 (453)
|+.+.+.|+
T Consensus 98 Le~r~e~Le 106 (520)
T PRK12704 98 LDRKLELLE 106 (520)
T ss_pred HHHHHHHHH
Confidence 333333333
No 193
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.27 E-value=16 Score=29.59 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
|..++...+..|..+.++|.....++..|..|...|+.++..++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455567788888888888888888888888888888887653
No 194
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=72.25 E-value=9.8 Score=42.13 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 351 ELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEE 389 (453)
Q Consensus 351 ElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~E 389 (453)
+.++.-...+++-.++...+-+++.+++++++|++|+..
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 334444456677778888888888999999999998875
No 195
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.16 E-value=40 Score=36.37 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+++|.+-.+.+..+..+|..++..|..+..+|+.+...|+.+|..+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445566666677778888888888888888888888888888877663
No 196
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.12 E-value=20 Score=32.36 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 387 KEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 387 e~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+.+...|..+...+-+=+-.-..++.+|+..|.++
T Consensus 74 ~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33333333333333333333445556666555544
No 197
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=71.92 E-value=15 Score=38.98 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=48.9
Q ss_pred eeeecccCCCCCCCC-CCCCcccccccC-CC-----CCCCCCCC---CCCCCCccccCCCCCCCCCCCCCCCcccc----
Q 036551 64 LLLHRSRLPTTSTGA-VNPDWSGFQAYS-PM-----PPHGFLAS---SPQAHPYMWGVQHIMPPYGTPPHPYVAMY---- 129 (453)
Q Consensus 64 ~~~~~~~~~~~~~~~-~yPDWs~mQAYy-~~-----pP~~f~as---~~~pHPYmWG~Q~mmpPYGtP~~PY~A~Y---- 129 (453)
+..+.+--+..+.++ .-.|-+.+|.-| +. .||+-..+ +.-|||--| +--++|+||-.+ ||++.|
T Consensus 57 i~ys~ehF~p~~pps~~p~dis~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~w-p~y~~pt~~~~~-p~p~~~~asm 134 (421)
T KOG3248|consen 57 ITYSNEHFSPGSPPSPLPADISPKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGW-PVYPIPTFGFRH-PYPGVVNASM 134 (421)
T ss_pred hhhhhhhCCCCCCCCCCcccccccCCCCCCCCCccccccccCCccccccCCCccCC-ccccCCCCCCCC-CCchhhhhhh
Confidence 333444445444433 446888999666 22 24322222 556899999 444788899974 999633
Q ss_pred ----CCCCcCCCCCCCCCCCCCC
Q 036551 130 ----PHGGIYAHPSIPPGSYPFS 148 (453)
Q Consensus 130 ----p~GgvYAHP~mp~gs~P~~ 148 (453)
||-.+=.||.....-+|+.
T Consensus 135 srf~ph~~~p~~p~~~tagiPhp 157 (421)
T KOG3248|consen 135 SRFSPHHVEPGHPGLHTAGIPHP 157 (421)
T ss_pred hhcchhccCCCCCCccccCCCCc
Confidence 3445556775555556654
No 198
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.91 E-value=20 Score=28.80 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 382 RADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
+++.|..+.+.|..++.+|..+...|+.+....++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444333
No 199
>PF14645 Chibby: Chibby family
Probab=71.73 E-value=16 Score=32.74 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
...|.++...|+.||+-|+-+++.|-.-+....+|...+..+|
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556667777888888887777777777777766666554
No 200
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=71.69 E-value=19 Score=33.42 Aligned_cols=54 Identities=30% Similarity=0.370 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDE 427 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~i 427 (453)
.++..|..++...+.+...++.++..++.+...+..+|..|+.+...+..++.+
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 456677778888888888889999999999999999999999998888777665
No 201
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=71.66 E-value=15 Score=33.74 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+....+-+..|+.||.-|+..+-.+++-++.=+.....|+++|...
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4555667888999999999999999999999999999999998764
No 202
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=71.53 E-value=4.5 Score=30.78 Aligned_cols=42 Identities=31% Similarity=0.409 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEV 397 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el 397 (453)
+++...|++=|+..-... ..|.+|+.++..|..||..|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 456677777766554433 346777777777777777777665
No 203
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.49 E-value=33 Score=33.59 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 358 KQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 358 KqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
++...+-..|.-..-++++..|+..++.-..+-+..-.+-...+.+...|..|...++.+|..+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~l 173 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQL 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555554444444433333334444444444444444444333
No 204
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=71.36 E-value=18 Score=32.90 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENAS 413 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~ 413 (453)
..|..-+++|+.+++.|+-+...|.++-..|++++++|..+...
T Consensus 66 ~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 66 VSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677788888888877777777777777776666655443
No 205
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.17 E-value=30 Score=41.23 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+++..+.+.|+-++++|+.+...+..++..+..++..|..|+..|+.+|.....
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 344556677888888888888888888888888888888888888877776654
No 206
>PHA03162 hypothetical protein; Provisional
Probab=70.96 E-value=3 Score=38.55 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLRSEV 397 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el 397 (453)
+++.-+|+|+.++..|+-||..|+.+|
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999999999887
No 207
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=70.80 E-value=22 Score=31.25 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
..+|..+++..+.|-.-|+..+..|..++..|+.|...++.+...+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35677777777777777777777777777777777777776655444
No 208
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=70.62 E-value=17 Score=30.90 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
|.-|+.|-.+|+..+.||..|..+++-|++-+..|.+....+
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~ 70 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVF 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 556788889999999999999999999998888887765433
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.48 E-value=9.2 Score=35.22 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 392 SLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 392 ~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
.|..++..|++++..|......|+.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 210
>smart00340 HALZ homeobox associated leucin zipper.
Probab=70.44 E-value=9.7 Score=29.24 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 036551 400 IRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 400 Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
|+.-|+.|..||+.|+.+|.+|+
T Consensus 10 LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555554444443
No 211
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.34 E-value=41 Score=34.69 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCC
Q 036551 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTR---IRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 352 lKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~---Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.|+.|.+..--.---|+.+-+---++++++++.+.-..|.-|..||.. |-+..+.|..|-+.||++|..-.
T Consensus 111 ~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 111 RKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333334455555566788888888888888888877654 56778888888888888887544
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.30 E-value=24 Score=31.70 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=36.7
Q ss_pred HhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 360 SNRESA-RRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 360 sNRESA-RRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
.||.++ .++.+--|.-.++|..+-+.|+.-++.|+.+...+.+.+..|.++...++..|.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333 455555566666666666666666666666666666666666666666665554
No 213
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=70.13 E-value=18 Score=33.07 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 367 RSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 367 RSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
+-|+=-..++.+|+.++..|..|---=-.+++.|-.+.++|+.++..|.+.|.
T Consensus 7 kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~ 59 (120)
T PF10482_consen 7 KLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIK 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33344444555555555555554443333444444444444444444444443
No 214
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=70.11 E-value=18 Score=38.25 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 384 DALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 384 e~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
..|+.++..|..++..|..++.+++.|...|+++|..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444444444444444444444444444433
No 215
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=70.08 E-value=25 Score=31.09 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 360 SNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEY 404 (453)
Q Consensus 360 sNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~ 404 (453)
.-||.|+.-.-=++.+.|.|+.--+.|+.|...-+++|+.|.+++
T Consensus 55 ~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 55 GKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556555555555555555555555555555555655555543
No 216
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.83 E-value=26 Score=31.32 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC
Q 036551 346 LQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTR----IRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 346 l~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~----Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+-.+...|-++-++++-+.+.....=|.+ +.+++.++..|+.+....+..+.. +.++-..|+.|+..++.++.+|
T Consensus 39 ~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e-~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 39 IAQEAQQKYERELVKHAEDIKELQQLREE-LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888777766554443 577888888888877777666664 4455667888888888888887
Q ss_pred CCcccc
Q 036551 422 PVQEDE 427 (453)
Q Consensus 422 ~g~~~i 427 (453)
..+-.+
T Consensus 118 ~~QN~l 123 (132)
T PF07926_consen 118 NEQNKL 123 (132)
T ss_pred HHHHHH
Confidence 655433
No 217
>PRK00295 hypothetical protein; Provisional
Probab=69.62 E-value=18 Score=29.47 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
|+.++..|+.....+..-|..|.+...+...+...|+.+|..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555553
No 218
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=69.51 E-value=11 Score=39.58 Aligned_cols=40 Identities=25% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
-.|.++-+.|++||..|+.++.. ++.+..||..|+..+..
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll~~ 99 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEILSP 99 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 44444444444444444444433 45566888888866653
No 219
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.50 E-value=9.3 Score=34.64 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 390 NASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 390 N~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
...|+.+|..|.+++..|+.||..||
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555666666555
No 220
>PRK00846 hypothetical protein; Provisional
Probab=69.40 E-value=19 Score=30.47 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
++|+.++..|+........-|..|.+...+...+...|+.+|..+.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555444
No 221
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=69.35 E-value=22 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
.++-.++..|..++..|+.+...|..++..++..
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544433
No 222
>PRK00106 hypothetical protein; Provisional
Probab=69.34 E-value=47 Score=36.95 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 036551 380 AQRADALK 387 (453)
Q Consensus 380 E~rVe~Le 387 (453)
+.+.+.|+
T Consensus 114 ekRee~Le 121 (535)
T PRK00106 114 DRKDENLS 121 (535)
T ss_pred HHHHHHHH
Confidence 33333333
No 223
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.22 E-value=16 Score=41.15 Aligned_cols=50 Identities=32% Similarity=0.480 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 375 ECDELAQRADALKEENASLRSEVTRI----------------------------RNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~L----------------------------kee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
++++|+.++..|+.++..|..+|..+ ++.++.|..||..|+++|..+...
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45566666666666666666555541 366889999999999999777543
No 224
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=69.22 E-value=23 Score=36.62 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=39.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Q 036551 358 KQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRI----------------------------RNEYEQLLA 409 (453)
Q Consensus 358 KqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~L----------------------------kee~~~L~s 409 (453)
++-.=+|--..-.|.++.+++-..++..|+.||+.|.+....| +.+++.|+.
T Consensus 37 rQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 37 RQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555556666667777777777766654444 355666666
Q ss_pred HHHHHHHHHhcCC
Q 036551 410 ENASLKERLGEIP 422 (453)
Q Consensus 410 EN~~Lr~qL~~L~ 422 (453)
|+..|+.+|...+
T Consensus 117 elkr~KsELErsQ 129 (307)
T PF10481_consen 117 ELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666543
No 225
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=69.01 E-value=16 Score=31.66 Aligned_cols=33 Identities=36% Similarity=0.544 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
.+++|+.++..|..||..|+.++..-+++-..|
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 226
>PF15556 Zwint: ZW10 interactor
Probab=68.79 E-value=70 Score=32.11 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=37.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 357 RKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 357 RKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
-+.++|.+...-.+....++..|+....+++..-..-+.++..|.+++..|.-+-..-+++|
T Consensus 117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKL 178 (252)
T PF15556_consen 117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKL 178 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666777777777777766666666666666666655555444433333
No 227
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.68 E-value=50 Score=32.74 Aligned_cols=38 Identities=39% Similarity=0.567 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 384 DALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 384 e~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
..++.|+..++..++.|..++..|...|..|..+|..+
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 33444444444444444444444444444444444443
No 228
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=68.59 E-value=11 Score=41.04 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
|+.|+.....-.++++.|+++.+.|+.+|..|-++|..++...
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 5567777777777788888888888888888888888777543
No 229
>PRK02224 chromosome segregation protein; Provisional
Probab=68.57 E-value=43 Score=38.01 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENA 391 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~ 391 (453)
+.++.+|+.+++.|+....
T Consensus 508 ~~~l~~l~~~~~~l~~~~~ 526 (880)
T PRK02224 508 EDRIERLEERREDLEELIA 526 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 230
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=68.14 E-value=33 Score=27.49 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
...|++-|..|..+.. |.++++.|+.||.+|+..|..
T Consensus 22 ~~~l~rY~~vL~~R~~-l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 22 ENFLKRYNKVLLDRAA-LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777776654 566678999999999988764
No 231
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=68.10 E-value=56 Score=29.68 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 374 AECDELAQRADALKEENASLRSEV-TRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el-~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.+++++...+..|..++....+.+ ..+.++....+.....+..+|.+|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 556666666777776666666655 444555555666666666666655
No 232
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=68.03 E-value=48 Score=37.43 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEE 389 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~E 389 (453)
.+++.+.+|+.+++.++.+
T Consensus 119 EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666544
No 233
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=67.97 E-value=20 Score=37.58 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036551 397 VTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 397 l~~Lkee~~~L~sEN~~Lr~q 417 (453)
|..|++.+..+..++..++.+
T Consensus 196 IR~lq~~L~~~~~~~~~~~~~ 216 (342)
T PF06632_consen 196 IRELQRLLASAKEEEKSPKQE 216 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhccccchhhh
Confidence 444444444444444444433
No 234
>smart00340 HALZ homeobox associated leucin zipper.
Probab=67.96 E-value=6.4 Score=30.16 Aligned_cols=29 Identities=34% Similarity=0.643 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
..||-|..=.+.|..||..|+.|++.|+.
T Consensus 5 vdCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 5 VDCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777778888888887777777553
No 235
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=67.89 E-value=26 Score=30.19 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.|+.|..-+..|++.|..|..+|.. |...|++.|.++.+..
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~~-------LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQE-------LLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 3455555555555555555555554 6666776666665543
No 236
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.88 E-value=36 Score=36.17 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 348 DERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEY 404 (453)
Q Consensus 348 DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~ 404 (453)
+++..++..|.++--++-+|.-+-=+.=..+|+..++.|+.+-+.|.+.++.|+.+.
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 445555555666666666665544444445555555555555555555555544443
No 237
>PRK15396 murein lipoprotein; Provisional
Probab=67.74 E-value=26 Score=29.66 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
++++|..+|+.|..+...|...+..++...+....|-..-.++|..+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777666666666555555443
No 238
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.58 E-value=46 Score=29.04 Aligned_cols=48 Identities=29% Similarity=0.366 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 376 CDELAQRADALKEENASL--RSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~L--r~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
++.++.|+..++.+...| +.++..|+-+...++-+.+.|.++|..+..
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344466666666666666 666666666666666666666666655543
No 239
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.44 E-value=34 Score=39.36 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 036551 402 NEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 402 ee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+.|..|+.||-.|..++..|.
T Consensus 97 ~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 240
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=67.36 E-value=17 Score=37.92 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
++.+|+.+++.|+.++..|..++..++++..+++.++..|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 9 RNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344567788888888888888888888888889888888774
No 241
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.17 E-value=19 Score=40.33 Aligned_cols=45 Identities=33% Similarity=0.468 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
++++|..+++.++.+...|..++.++.++++....++..|.+++.
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555544443
No 242
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=67.07 E-value=53 Score=35.79 Aligned_cols=43 Identities=35% Similarity=0.377 Sum_probs=23.8
Q ss_pred HHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 357 RKQSNRESARRSRLRK-----QAECDELAQRADALKEENASLRSEVTR 399 (453)
Q Consensus 357 RKqsNRESARRSR~RK-----qaelEeLE~rVe~Le~EN~~Lr~el~~ 399 (453)
-+..-|.+|++--+|- ++++.++|.++..|+.||..|.++.-.
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666555442 344555566666666666666555444
No 243
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=66.55 E-value=8.8 Score=37.13 Aligned_cols=9 Identities=56% Similarity=1.309 Sum_probs=5.4
Q ss_pred cCCCCCCCC
Q 036551 89 YSPMPPHGF 97 (453)
Q Consensus 89 Yy~~pP~~f 97 (453)
|..+||.+|
T Consensus 118 yv~VPp~gf 126 (182)
T PF06495_consen 118 YVDVPPPGF 126 (182)
T ss_pred eccCCCccc
Confidence 446777655
No 244
>PHA03155 hypothetical protein; Provisional
Probab=66.49 E-value=7.3 Score=35.30 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTR 399 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~ 399 (453)
-+|+|+.++..|+-||..|+.++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688888888888888888888744
No 245
>PRK14160 heat shock protein GrpE; Provisional
Probab=66.16 E-value=22 Score=35.09 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
..+..|+.++..|+.++..|..++..|+.++..+.++...+|.+.
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666666666665555443
No 246
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=66.12 E-value=31 Score=30.48 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 381 QRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 381 ~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+++..+-.-|+.|+..-..|+++|+.|..-+..|...+.+
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666778888888888999999999999999887764
No 247
>PHA03162 hypothetical protein; Provisional
Probab=65.95 E-value=8.7 Score=35.63 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 397 VTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 397 l~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
+++|..++.+|+.||..||.+|..-.+.++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~ 44 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDP 44 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 566778888899999999999987766653
No 248
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.91 E-value=46 Score=41.22 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 353 KRQRRKQSNRESARRSRLRKQA-------------ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqa-------------elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
++.+...+.++.|++.+.-+++ .+++|+.+++..+.+...+..++..+.+++..++.+...|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665543322 223333334444444444444444444444444444444444443
No 249
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.73 E-value=65 Score=27.86 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLRS 395 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~ 395 (453)
.|..++..|..++..|+.++..|..
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 250
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=65.58 E-value=23 Score=37.57 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
|..|++++.++..-..||..+.+|+..++.-|..|...-.+|++.|..
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999989999999999999999999888888888877654
No 251
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=65.35 E-value=19 Score=35.98 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 369 RLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 369 R~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
-.-=+.++++|+.+|..|+-+++.+..+|++++++-..+-.+...+..++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34558899999999999999999999999999999999888887766544
No 252
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.24 E-value=34 Score=37.42 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 369 RLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 369 R~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
+.|+..++..+-.+++.|+.||-. .++++|.++...|+.....|+..+..+....
T Consensus 280 e~rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455556666666677766666543 4466666777777777777776666666544
No 253
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=65.12 E-value=11 Score=42.32 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.+|-.+|++|.-|+..|+-|+...++-..+|+..+++|.++|..+.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888888888877777666666666666666665543
No 254
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=65.05 E-value=29 Score=36.22 Aligned_cols=53 Identities=26% Similarity=0.334 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 369 RLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 369 R~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|.+..+++++|+.+.+.|.++|...+..+..|..++..|..--.-|+..|...
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~ 155 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLP 155 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCC
Confidence 56677788888888888888998888888888888888887777777766443
No 255
>PRK00736 hypothetical protein; Provisional
Probab=64.71 E-value=26 Score=28.58 Aligned_cols=44 Identities=9% Similarity=0.224 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
++.++..|+.....+..-|..|.+...+...+...|+.+|..|.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555553
No 256
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=64.55 E-value=27 Score=36.35 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 361 NRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 361 NRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
--|+++|-....+.++.+++.....-+........+-..|.+.+.+|.+||.-|+++|...+.+.+
T Consensus 180 ~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 180 ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777778877777666666666677778889999999999999999998877655
No 257
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=64.53 E-value=27 Score=32.61 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 391 ASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 391 ~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
..|...|..|.+....+..++..+.
T Consensus 111 ~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 111 EKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444433
No 258
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=64.27 E-value=13 Score=36.39 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
++.|...++.|..+|..|+.++..|..+
T Consensus 114 ~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~ 141 (198)
T KOG0483|consen 114 YESLKRQLESLRSENDRLQSEVQELVAE 141 (198)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 259
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.26 E-value=21 Score=37.19 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
+-+|+.+++.+..||..|...+...++--..|.+|+..|+++-
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444454444444444445555555554443
No 260
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=64.23 E-value=2.2 Score=47.71 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Q 036551 346 LQDERELKRQRR-KQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQ---LLAENASLKERLGEI 421 (453)
Q Consensus 346 l~DErElKReRR-KqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~---L~sEN~~Lr~qL~~L 421 (453)
+.||-+.=|.+. +..-.++.-..=++|-+.+++|..+|+.|+.+|..|...+..|.+++.+ +..++..|+.+|..+
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eL 375 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQEL 375 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456644333333 3333344333334677889999999999999998877776666555443 333333444444433
Q ss_pred C
Q 036551 422 P 422 (453)
Q Consensus 422 ~ 422 (453)
.
T Consensus 376 e 376 (713)
T PF05622_consen 376 E 376 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 261
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=63.93 E-value=15 Score=32.99 Aligned_cols=44 Identities=39% Similarity=0.504 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENAS 413 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~ 413 (453)
+-=|.-+++|-++|+..+.||-.|+.|++-|-+-++.|.+--+.
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSV 109 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSV 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhh
Confidence 44567899999999999999999999999999988888776544
No 262
>PHA03155 hypothetical protein; Provisional
Probab=63.70 E-value=11 Score=34.26 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 397 VTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 397 l~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
++.|..++.+|+.||..||.+|..-..+++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~d 39 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPED 39 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 456777888899999999999987655544
No 263
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.45 E-value=74 Score=29.63 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 036551 363 ESARRSRLRKQAECDE 378 (453)
Q Consensus 363 ESARRSR~RKqaelEe 378 (453)
+.+++.-..=+++++.
T Consensus 48 En~k~eie~L~~el~~ 63 (140)
T PF10473_consen 48 ENSKAEIETLEEELEE 63 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 264
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=63.37 E-value=68 Score=33.75 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
|+.++.+|+.+...|..||+.++..+.=....|.-|...|.+..
T Consensus 180 Lqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 180 LQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44455555555555555555555555555556666666555543
No 265
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=63.33 E-value=18 Score=35.63 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+-+.|..+|+.|+.|+..|+.++..|++ |..+..-|.+-|..|.+.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~~ 171 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTGQ 171 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 3444555555555555555555555443 334444555556666553
No 266
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.10 E-value=8.7 Score=41.71 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRS 395 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~ 395 (453)
.++|.|.-+...++.||.-|+.
T Consensus 64 ~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 64 GELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred hhHHhhhhHHHHHHhcCchhhh
Confidence 3444445555555555554443
No 267
>PRK12705 hypothetical protein; Provisional
Probab=63.03 E-value=86 Score=34.75 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.|+.+.+.|+.....|..+-..|..+...|......+..+|..+
T Consensus 92 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554444444444444444444444444443
No 268
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.90 E-value=64 Score=33.39 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYE 405 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~ 405 (453)
++..|..++..+..++...+.++..++++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333333333
No 269
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=62.89 E-value=26 Score=34.46 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 036551 372 KQAECDELAQRADALKEENASLRSEVT---RIRNEYEQLLA 409 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~---~Lkee~~~L~s 409 (453)
.-....+|.++.+.|++||..|+.++. .|++|+++|+.
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666655555 44555555554
No 270
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=62.85 E-value=40 Score=28.63 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 385 ALKEENASLRSEVTRIRNEYEQLLAENA 412 (453)
Q Consensus 385 ~Le~EN~~Lr~el~~Lkee~~~L~sEN~ 412 (453)
.|..+-..|+.++..|.++...+..+..
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444333
No 271
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=62.75 E-value=34 Score=28.41 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENAS 413 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~ 413 (453)
..+|+.....-..+|..|..++..|.++.+.|......
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555554444433
No 272
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.65 E-value=83 Score=28.68 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=28.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 353 KRQRRKQSNRESARRSRLRKQAECDELA-------QRADALKEENASLRSEVTRIRNEYEQ 406 (453)
Q Consensus 353 KReRRKqsNRESARRSR~RKqaelEeLE-------~rVe~Le~EN~~Lr~el~~Lkee~~~ 406 (453)
++..+++..-+.+...-.+|++.++.|+ .+|+.|+.+...+..++..++.+++.
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666666666666555554 24555555555555555554444433
No 273
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=62.61 E-value=20 Score=31.54 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+.+|+.+.+-...|...|+..+.+|+.||..|..+|..+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666554
No 274
>PF14282 FlxA: FlxA-like protein
Probab=62.54 E-value=25 Score=30.75 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036551 396 EVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 396 el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
++..|..++..|..+...|..+.
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 275
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.48 E-value=82 Score=33.06 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 389 ENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 389 EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
++..|..-+...++++..|..|...|+++|.++.|..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4455667778889999999999999999999998753
No 276
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=62.42 E-value=89 Score=31.45 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 398 TRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 398 ~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
...+++++-|..-|++|+.+|..+..+
T Consensus 231 kk~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 231 KKMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 345667777888888888888776554
No 277
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=62.19 E-value=1.2e+02 Score=31.32 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
..++++.+.+.++.+++......+.++..|..+..+|......++.++..+.++
T Consensus 211 ~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 211 ELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334445555555555555555555555555555555555555555555555443
No 278
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.01 E-value=36 Score=32.66 Aligned_cols=32 Identities=19% Similarity=0.508 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAE 410 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sE 410 (453)
|..+++.....|..|..+|..|+.++..|..|
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666664333
No 279
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.99 E-value=52 Score=39.73 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036551 380 AQRADALKEENASLRSEVT 398 (453)
Q Consensus 380 E~rVe~Le~EN~~Lr~el~ 398 (453)
+.+++.|..++..|..++.
T Consensus 887 e~~L~el~~el~~l~~~~~ 905 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIK 905 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 280
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=61.89 E-value=45 Score=36.20 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
.-+.++..|+.++.....++..+.+.|..+...+..|+.+-++=+..|
T Consensus 70 ~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 70 SLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555556666666666666666666665553333333
No 281
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.84 E-value=96 Score=30.90 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
..||.-+..++.|....+..+..|.++|..|..+..++|..
T Consensus 63 n~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666777777777777777777766
No 282
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=61.66 E-value=84 Score=32.56 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
.++.+|+.+...|+.+|+.|+.|+..++++
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666544
No 283
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=61.62 E-value=1.2e+02 Score=26.96 Aligned_cols=20 Identities=20% Similarity=-0.042 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 036551 350 RELKRQRRKQSNRESARRSR 369 (453)
Q Consensus 350 rElKReRRKqsNRESARRSR 369 (453)
+...+.+|.+-.+..+-..-
T Consensus 18 ~~~~~~~~~l~~~l~~~l~~ 37 (117)
T COG2919 18 ERRVRRRRILTLVLLALLAL 37 (117)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33444555666666554443
No 284
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=61.42 E-value=37 Score=30.12 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 359 QSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENAS 413 (453)
Q Consensus 359 qsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~ 413 (453)
-.||.+++-.++-+..+-..|. -+.|+..|..++..+.++...+..+..+
T Consensus 56 sQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~~~ 105 (108)
T PF06210_consen 56 SQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERDQE 105 (108)
T ss_pred HhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566666543222222222222 2344555666666666555555555443
No 285
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.38 E-value=66 Score=37.36 Aligned_cols=53 Identities=28% Similarity=0.331 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 374 AECDELAQRADALKEENASLRS---------------------EVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~---------------------el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
.++.++..++..+..||..|.. ++..|...++.++.||..||-+|..+...-.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777776655 3455666677777777777776666554333
No 286
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.36 E-value=80 Score=32.23 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+...+-....+|+.+.+++...++.++.|+.+...|++++..|+..
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666778999999999999999999999999999988888653
No 287
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=61.31 E-value=11 Score=35.91 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 389 ENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 389 EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
|-..|+.++++|+.|+..|+.|. .+++++.
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34445555555555555666666 5555554
No 288
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.26 E-value=28 Score=39.03 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENA 412 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~ 412 (453)
..+++++.+++.|+.+...+..++...+.++..|+.+..
T Consensus 342 ~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 342 SQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554
No 289
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.26 E-value=58 Score=38.75 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhcCCC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNE---------------YEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee---------------~~~L~sEN~~Lr~qL~~L~g 423 (453)
+.+.|+.+|+.|+..+.+|..+++.|+.+ +.+|+.+|..||+.|..|+.
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777777765 55899999999998888775
No 290
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.92 E-value=16 Score=39.92 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhhcce
Q 036551 47 AVRQRSKLKKRRQRRHL 63 (453)
Q Consensus 47 ~~~~~~~~~~~~~~~~~ 63 (453)
..||+.|-+|||++.-+
T Consensus 329 eak~~kKQrk~r~~~k~ 345 (483)
T KOG2236|consen 329 EAKQMKKQRKRRSKVKF 345 (483)
T ss_pred HHHHHHHHhhccccccc
Confidence 34555555555554433
No 291
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.83 E-value=37 Score=28.10 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|.+.+..|-.+-+.|......+...|..|+.++..++.+...|+.++..+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777777666554
No 292
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=60.80 E-value=25 Score=27.80 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
.....++..|+.||..|+.+|..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566778888888888888777553
No 293
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=60.71 E-value=47 Score=28.53 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 391 ASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 391 ~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
..+..++..|...++.+..+|..|.++|...+
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667788888889999999999999988765
No 294
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=60.70 E-value=1.2e+02 Score=31.91 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 397 VTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 397 l~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+..|..+..+|..|++.|+.+|..-
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4445677888999999999998863
No 295
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.49 E-value=69 Score=30.96 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+.++.|+.+++.++.....|...+..|+.++..+...-..|..+...
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666555555433
No 296
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.26 E-value=50 Score=36.28 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 356 RRKQSNRESARRSRLRKQA----ECDELAQRADALKEENASLRSEVTRIR 401 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqa----elEeLE~rVe~Le~EN~~Lr~el~~Lk 401 (453)
+-.++|-++++.+=+||.+ .++.++.+++.++.+|..|.+....++
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~ 416 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWR 416 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4456777788777777654 445667777777777777766644433
No 297
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=60.15 E-value=20 Score=32.55 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLR 394 (453)
Q Consensus 352 lKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr 394 (453)
..|..|+.++|+.+ .++++++|+.++++|+.++..+.
T Consensus 96 ~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 96 YWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555443 23456666666666666655544
No 298
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.88 E-value=97 Score=30.72 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 363 ESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIR 401 (453)
Q Consensus 363 ESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lk 401 (453)
.+++.--.+-+..+..|+.++..|+..|..|...|..|.
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 333433344555566677777777777766666665554
No 299
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=59.81 E-value=18 Score=32.73 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 367 RSRLRKQAECDELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 367 RSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
|++.+.+..-++++++++.|+.+...|..+++.+++
T Consensus 98 Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 98 RSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444567777778777777777777666543
No 300
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=59.73 E-value=67 Score=34.28 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
++.|..+...|++++..|.++...++.+...+...|-.+-..+.
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 44566677777888888888888888888888888888877655
No 301
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=59.63 E-value=18 Score=29.36 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.++..|+.-+..|+.|-... +..|-+|++.|..+|..|.=+|...
T Consensus 3 ~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL~m~ 47 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKLIMK 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceeeeec
Confidence 34566666677776665553 3335556666666676666555543
No 302
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=59.57 E-value=64 Score=38.53 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
+++++..++..|+...+.|+.++..+.+++..+..+...++.+|
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL 483 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 303
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=59.40 E-value=1.1e+02 Score=33.32 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
+..|..+...|+.+...|..+-.+|.++.+.|.++-++|.
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 304
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=59.37 E-value=55 Score=27.48 Aligned_cols=46 Identities=35% Similarity=0.461 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhcC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNE--------------YEQLLAENASLKERLGEI 421 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee--------------~~~L~sEN~~Lr~qL~~L 421 (453)
+..|+.+-+.+.-|+-.|++++..+++| +.+|..|..++++.|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3445555556666666666666665555 446677777777777654
No 305
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=59.30 E-value=14 Score=33.68 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 397 VTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 397 l~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
++.|..++.+|+.||..||.+|..-.+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 456778888899999999999998886
No 306
>PHA03161 hypothetical protein; Provisional
Probab=59.29 E-value=76 Score=30.11 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIR-------NEYEQLLAENASLKERL 418 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lk-------ee~~~L~sEN~~Lr~qL 418 (453)
.+++..|..|..+....++|++.|. +..++|.....+|++.|
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel 105 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDI 105 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554 33444444444444433
No 307
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=59.09 E-value=57 Score=31.53 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
+|++++++-+.+.++++.+..+|+.+|...++
T Consensus 143 ~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 143 IRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666666666666666665443
No 308
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=59.09 E-value=86 Score=33.48 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 393 LRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 393 Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
|..+...|++++..|+.+...|.+++..
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554444
No 309
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.06 E-value=30 Score=28.66 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 384 DALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 384 e~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
+.|+.+...|..++..|+.+...+..+...++..|..+-+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555556666666666666666666666665543
No 310
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=59.01 E-value=18 Score=30.68 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
+.+|..||..|+.+|+.|..+++++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666665555444443
No 311
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.70 E-value=91 Score=35.64 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCCcc
Q 036551 409 AENASLKERLGEIPVQE 425 (453)
Q Consensus 409 sEN~~Lr~qL~~L~g~~ 425 (453)
.+++.|..+|.+|.|..
T Consensus 300 ~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHhhcCc
Confidence 67777777887777643
No 312
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.66 E-value=72 Score=38.30 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=10.9
Q ss_pred CcCCcccccccCCCCCC
Q 036551 190 SLGSLNMITGKNNDLGK 206 (453)
Q Consensus 190 ~~Gsl~m~~Gk~~~~gk 206 (453)
|.-.+|.++|+|+. ||
T Consensus 60 Fg~~vNfI~G~NGS-GK 75 (1074)
T KOG0250|consen 60 FGPRVNFIVGNNGS-GK 75 (1074)
T ss_pred cCCCceEeecCCCC-cH
Confidence 44457888887766 55
No 313
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=58.47 E-value=52 Score=29.33 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036551 383 ADALKEENASLRSEVTR 399 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~ 399 (453)
++.|+.+...++.++..
T Consensus 110 ~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 110 LEKLEEALQKLASRIAQ 126 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 314
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.40 E-value=47 Score=33.72 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 036551 402 NEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 402 ee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+....++.+...|+..+....
T Consensus 89 t~~~~ie~~l~~l~~~aG~v~ 109 (247)
T COG3879 89 TDDAALEDRLEKLRMLAGSVP 109 (247)
T ss_pred hHHHHHHHHHHHHHHHhccCC
Confidence 334455556677777766653
No 315
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=58.07 E-value=61 Score=30.24 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKE---ENASLRSEVTRIRNEYE 405 (453)
Q Consensus 374 aelEeLE~rVe~Le~---EN~~Lr~el~~Lkee~~ 405 (453)
.+|.+....++.|+. .|..|+.+|..|+.++.
T Consensus 34 ~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 34 TQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 334444444444444 34444444444444433
No 316
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.66 E-value=54 Score=34.91 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
++.|..+...|++++..|.++...++.+...+...|-.+-.++.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 45566666677777777777777888888888888888876554
No 317
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=57.63 E-value=66 Score=36.65 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
+-+++++..++++|+++...-+.++.+|+-++++.+...++|+++
T Consensus 106 ~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 106 NSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 445666666666666666666666666666666666666666554
No 318
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=57.55 E-value=39 Score=37.10 Aligned_cols=58 Identities=14% Similarity=0.297 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 361 NRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 361 NRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
.|.++.-. +|+..++-+...+..|+....+++.++..|..+++.|..+-++|+..|..
T Consensus 435 drl~~~L~--qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 435 DRLVESLQ--QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 34455577788888888888888888888888888888888888887765
No 319
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=57.17 E-value=42 Score=30.68 Aligned_cols=52 Identities=6% Similarity=0.027 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
..++.|+.+++..+.....-...|..|+..+..+..+++.+..++..+-..+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 4567888888888888888888999999999999999998888865554443
No 320
>PRK10698 phage shock protein PspA; Provisional
Probab=57.11 E-value=1.3e+02 Score=29.49 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+..|+.+++..+.....|...+..|+.++.+++..-..|..+...
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555566666666666666666665555554433
No 321
>PLN02678 seryl-tRNA synthetase
Probab=56.95 E-value=79 Score=34.37 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
++.|.++-..|++++..|..+...++.+...+...|-.+..++.
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 44555566667777777777777788888888888888877665
No 322
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=56.95 E-value=60 Score=41.27 Aligned_cols=69 Identities=28% Similarity=0.304 Sum_probs=61.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 358 KQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 358 KqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
.+.-.+.+++++.-=++.+..++.+++.|++|+..|+..+..+......++.|..++.+.|..+..+-.
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s 1712 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNS 1712 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 555788999999999999999999999999999999999999999999999999999999998776543
No 323
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.70 E-value=55 Score=27.83 Aligned_cols=35 Identities=34% Similarity=0.584 Sum_probs=23.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 364 SARRSRLRKQ----AECDELAQRADALKEENASLRSEVT 398 (453)
Q Consensus 364 SARRSR~RKq----aelEeLE~rVe~Le~EN~~Lr~el~ 398 (453)
|-++-|.||. .+++.|..++..|..+|..|+.++.
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555554 4667777777777777777777653
No 324
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=56.64 E-value=34 Score=30.36 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 381 QRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 381 ~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
--...+-.....|..++..+..+++.|..+|..|++++..|...
T Consensus 43 ~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 43 WFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344445555566666666667777777777777777777665
No 325
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.51 E-value=87 Score=33.38 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 392 SLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 392 ~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
.|..++..|++++..|+.+...|.+++.
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 326
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.51 E-value=60 Score=37.71 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 382 RADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+.+.|..|...+++++..++..-++|..++..|++++..|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45667777777888888888888888888888888888887
No 327
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.43 E-value=54 Score=39.78 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 367 RSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 367 RSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+-.+++..+..|+..+..++.|.....+++..++.+-..|......|++++.++..
T Consensus 535 ~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 535 ESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444554444433
No 328
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.43 E-value=62 Score=29.66 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
++++.|..++++..+-....++++..+++....+..+...+...+..|
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 329
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=56.41 E-value=29 Score=39.25 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLL 408 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~ 408 (453)
++|+++|+.|+.++..|..+|..+..++...+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e 113 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQE 113 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544444444444433333
No 330
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=56.26 E-value=1.3e+02 Score=32.98 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 381 QRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 381 ~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
+.+..|.++-+.|+.++..|.+++.+|.+|...|...-+.|.
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666666655555554
No 331
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=56.02 E-value=88 Score=32.09 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 359 QSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYE 405 (453)
Q Consensus 359 qsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~ 405 (453)
|.-|+=|.+-|..=|.+++||+++-.+..-...-|+.++..|-++|.
T Consensus 43 Qas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~ 89 (277)
T PF15030_consen 43 QASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCR 89 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555556666666655544
No 332
>PRK04863 mukB cell division protein MukB; Provisional
Probab=55.99 E-value=87 Score=38.91 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
.+++++.+++.++.+...|+.++..+.++...+..+...++..+
T Consensus 377 eleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 377 QQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444454444444445555555544444333
No 333
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.95 E-value=95 Score=33.55 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
++.|.+....+..++..|..+...|..+.+.|+++|..++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777788888888888888777554
No 334
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=55.91 E-value=63 Score=27.62 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+.+++|...|.+|......|...+..++++......|+.+-+++|...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 456778888888888888888888888888888888888888877654
No 335
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=55.83 E-value=1.3e+02 Score=28.03 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 386 LKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 386 Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|..+.......+..-+.+++.|..||..||.--..-
T Consensus 66 Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~ 101 (135)
T TIGR03495 66 LRQQLAQARALLAQREQRIERLKRENEDLRRWADTP 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCC
Confidence 344444444445555677888999999998765443
No 336
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.80 E-value=41 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAEN 411 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN 411 (453)
++.++..|+..+..+..++..+.+++.++..-+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555444433
No 337
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=55.61 E-value=83 Score=30.62 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 362 RESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 362 RESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
|.++..-|++=+....+|+.+=.+|+....-.+++|..|.++
T Consensus 122 r~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k 163 (187)
T PF05300_consen 122 RASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEK 163 (187)
T ss_pred hhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 338
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=55.45 E-value=1.2e+02 Score=33.41 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRI 400 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~L 400 (453)
+.++.++..+..++..+..++..|
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~l 86 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEADLREV 86 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 339
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=55.38 E-value=1.7e+02 Score=26.85 Aligned_cols=62 Identities=23% Similarity=0.420 Sum_probs=37.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHh
Q 036551 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIR---------NEYEQLLAENASLKERLG 419 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lk---------ee~~~L~sEN~~Lr~qL~ 419 (453)
--++-|.|.||--+++.++ +.++.++..|......+...+..|. .++..|..+...++.+|.
T Consensus 36 ~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~ 106 (126)
T PF09403_consen 36 YQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLD 106 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666777666665555 5677777777666666666655553 456666666655555543
No 340
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=55.36 E-value=74 Score=37.50 Aligned_cols=76 Identities=28% Similarity=0.253 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 036551 351 ELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKE--ENASLRSE-----------VTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 351 ElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~--EN~~Lr~e-----------l~~Lkee~~~L~sEN~~Lr~q 417 (453)
|.||..--+..|+.-|.-|++++-+.++|+.++..|+. -+.....+ =+.+..++++|..|+.+|..+
T Consensus 606 E~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~r 685 (988)
T KOG2072|consen 606 EEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSR 685 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666665556666666665551 11111100 122356778888888888888
Q ss_pred HhcCCCccc
Q 036551 418 LGEIPVQED 426 (453)
Q Consensus 418 L~~L~g~~~ 426 (453)
|.......|
T Consensus 686 L~~q~KkiD 694 (988)
T KOG2072|consen 686 LQYQEKKID 694 (988)
T ss_pred HHHHHhhhh
Confidence 877665443
No 341
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=55.33 E-value=25 Score=31.54 Aligned_cols=21 Identities=24% Similarity=0.348 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036551 383 ADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee 403 (453)
...|+.||+-|+-+++.|-.-
T Consensus 81 ~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777666665443
No 342
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.30 E-value=99 Score=30.42 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAEN 411 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN 411 (453)
.+-.+...++..|+.|...++.+|..|..++..|..++
T Consensus 147 ~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 147 ARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555666666666666666555555555544
No 343
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=55.29 E-value=1.3e+02 Score=28.42 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=22.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 354 RQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSE 396 (453)
Q Consensus 354 ReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~e 396 (453)
|+.+...+-+.|.+.+..=.+..++.+.++..-+.|-+.++.+
T Consensus 42 R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 42 RQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666555554444444555555555544444444
No 344
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.24 E-value=1.5e+02 Score=30.83 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
+.+.+|..++..|..+-..+-.++..|+++-..+-.....|+..+
T Consensus 48 ~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 48 AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444455544444444444433343333
No 345
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=55.08 E-value=27 Score=35.69 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENA 412 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~ 412 (453)
|+.+++.|+.+...++.++..++++...++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIE 37 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443443333
No 346
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=54.91 E-value=39 Score=34.91 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 359 QSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 359 qsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
+=|.|+-+.+ =+.+++.|..+|..|+..|..|+.++...++.++.|+.
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455554433 35678888888888888888888888887777776654
No 347
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=54.87 E-value=96 Score=36.74 Aligned_cols=67 Identities=22% Similarity=0.171 Sum_probs=43.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 357 RKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 357 RKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
-.++.-++++.+-....++..+|..+++.+..+-..+..+.+.....+++|+.|...|..++..+..
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888877777778887777777776665555555555555555555555555554443
No 348
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=54.84 E-value=80 Score=26.94 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
++.|..-...|+.++....+-..+|+.++..++.
T Consensus 21 I~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 21 IDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444444444444444433
No 349
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.82 E-value=1.3e+02 Score=34.70 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 369 RLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 369 R~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
+.+..+++.+|+++.+.|+..-..|.++++.+.+..+.|......|...+
T Consensus 574 ~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 574 KEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777777777777777777777666666666555555544
No 350
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=54.77 E-value=52 Score=33.88 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTR 399 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~ 399 (453)
++++|+.+++.++.+...+..++..
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444443
No 351
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=54.57 E-value=24 Score=38.79 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 386 LKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 386 Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
|+.+|..|.+++..|.+.+.+.+.|...|+++|..+.++..
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~ 46 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPS 46 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44444444445555555555566666667777777766544
No 352
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=54.43 E-value=1.2e+02 Score=27.25 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=25.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 358 KQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 358 KqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
+..|+.-|.+. +-++.++++|..++..+-.+-..|..++..+..++..+
T Consensus 40 ~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666665543 33345566666666666666666666655555555544
No 353
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=54.41 E-value=1.1e+02 Score=37.36 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 036551 362 RESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDER 428 (453)
Q Consensus 362 RESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is 428 (453)
|..+...+.++ ..++++..++..++.+...+..++..++++...|+.+...|+.++..+...+...
T Consensus 265 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~ 330 (1353)
T TIGR02680 265 RRRATRLRSAQ-TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQ 330 (1353)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34444444333 3457788888888888888888888888888888888888888888887765543
No 354
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.38 E-value=30 Score=36.78 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 036551 375 ECDELAQRADAL 386 (453)
Q Consensus 375 elEeLE~rVe~L 386 (453)
|.++|..+|+.|
T Consensus 47 EN~~Lk~eVerL 58 (420)
T PF07407_consen 47 ENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHH
Confidence 345555555555
No 355
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=54.19 E-value=7.7 Score=32.85 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=24.2
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHhhhh
Q 036551 32 WCENLLETGDIESWEAVRQRSKLKKRRQR 60 (453)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (453)
-||.-+...+|-||.||||-.|---+||+
T Consensus 52 ~C~eH~~nNnllSw~av~~le~qt~~r~s 80 (82)
T PF05528_consen 52 TCEEHQSNNNLLSWQAVKQLERQTPQRQS 80 (82)
T ss_pred ccHHHhcccchHhHHHHHHHHhhCccccc
Confidence 58888888999999999998877666664
No 356
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.14 E-value=78 Score=28.22 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
.+|+.+++.++.+...|..+...|++++..++.+.+.|
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333
No 357
>PRK14148 heat shock protein GrpE; Provisional
Probab=54.08 E-value=32 Score=33.52 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEV 397 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el 397 (453)
++|..++..+.++...++++.
T Consensus 57 ~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 57 DQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334434444444444333
No 358
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.97 E-value=1.1e+02 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036551 386 LKEENASLRSEVTRIRNE 403 (453)
Q Consensus 386 Le~EN~~Lr~el~~Lkee 403 (453)
+|.+.+.|++|+.+|.++
T Consensus 53 ~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 359
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.88 E-value=90 Score=32.50 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 350 RELKRQRRKQSNRESARRSRLRKQAECDELAQ-------RADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 350 rElKReRRKqsNRESARRSR~RKqaelEeLE~-------rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+.+.++.-++.+-+--++-|..||=+||.||. +|+.-+.+...|+.|+..|.+.|+.|+.-+..|-..|..
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~ 92 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh
Confidence 44455555556666666677888888888874 566666777789999999999999888877766554443
No 360
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=53.87 E-value=35 Score=31.81 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRS---EVTRIRNEYEQLLAENA 412 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~---el~~Lkee~~~L~sEN~ 412 (453)
+++.|+.++.....+...|+. .+..|+.+++.|..+|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 444444444444444444444 34444444444444444
No 361
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.82 E-value=1.1e+02 Score=34.27 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
.+..|..+++.++.+...+..++..+.+++..+..+...|+.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 362
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=53.63 E-value=61 Score=27.60 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
.+|..++..-+.|...|..-+..|+.++.+...-|..|..++..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 363
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.51 E-value=62 Score=36.91 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+..|.+++..|+++...|..++..+.++++.+..++..+..+|..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 287 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLES 287 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555544444443
No 364
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=53.51 E-value=83 Score=32.40 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 036551 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNE---------------------------- 403 (453)
Q Consensus 352 lKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee---------------------------- 403 (453)
.|+..-.++.++..+.-..|-..--+.||.-+.+|+.+|..|..+...+..+
T Consensus 49 ~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~ 128 (309)
T PF09728_consen 49 QKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSE 128 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred -HHHHHHHHHHHHHHHhcCCCccccc
Q 036551 404 -YEQLLAENASLKERLGEIPVQEDER 428 (453)
Q Consensus 404 -~~~L~sEN~~Lr~qL~~L~g~~~is 428 (453)
+.++..||..|+++|..+..+..++
T Consensus 129 ~~~k~~~eN~~L~eKlK~l~eQye~r 154 (309)
T PF09728_consen 129 RNIKLREENEELREKLKSLIEQYELR 154 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
No 365
>KOG3811 consensus Transcription factor AP-2 [Transcription]
Probab=53.40 E-value=23 Score=38.32 Aligned_cols=36 Identities=36% Similarity=0.813 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCccc-cC-CCCcCCCCCCCCCCCCCC
Q 036551 112 QHIMPPYGTPPHPYVAM-YP-HGGIYAHPSIPPGSYPFS 148 (453)
Q Consensus 112 Q~mmpPYGtP~~PY~A~-Yp-~GgvYAHP~mp~gs~P~~ 148 (453)
-++.|||++|| ||.-. |. --.+|.|++|.+-.+|+.
T Consensus 51 ~~~qP~~~f~p-~y~~~~~~~~~~~y~~~~~~~~~~~~~ 88 (434)
T KOG3811|consen 51 SPFQPPYYFPP-PYQENGYSQSADPYSHPNMDPYGIPLN 88 (434)
T ss_pred CCcCCCCCCCC-cccccccccccchhhcCCCCccCCCCC
Confidence 34778888876 77755 54 246888888876555543
No 366
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=53.36 E-value=39 Score=34.57 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
-.+.|+.+++.|+.||..|+.+++.|+.+++....=...+
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777766655444433333
No 367
>PF14282 FlxA: FlxA-like protein
Probab=53.35 E-value=52 Score=28.75 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLR 394 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr 394 (453)
.|+..++.|..++..|+++...|.
T Consensus 48 ~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 48 QKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 368
>PLN02320 seryl-tRNA synthetase
Probab=53.32 E-value=32 Score=37.90 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 383 ADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 383 Ve~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
++.|..+-..|++++..|.++...++.+...|...|-.+-..+.
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~V 175 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34455555566666666666666677777777777777766544
No 369
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.29 E-value=39 Score=30.81 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
|.|+.+|+.|++.-..|++++..|++++.++
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 370
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=53.12 E-value=32 Score=37.89 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
+.+|+.++..|.++|..|.+.+...++++.+|..|...|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999988865
No 371
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.07 E-value=52 Score=38.17 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHhc
Q 036551 369 RLRKQAECDELAQRADALKEENASLRSEVTRIRNE----------------------------YEQLLAENASLKERLGE 420 (453)
Q Consensus 369 R~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee----------------------------~~~L~sEN~~Lr~qL~~ 420 (453)
+-+-.+++..|..+++.+++||..|+-++.-|.++ +.+|++|=+.||.-+..
T Consensus 129 ~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 129 KSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445667889999999999999999998877644 55788888888877754
Q ss_pred -CCCccccccccccc
Q 036551 421 -IPVQEDERSVRNDQ 434 (453)
Q Consensus 421 -L~g~~~is~~rn~q 434 (453)
|.|+.++.-.+++-
T Consensus 209 ~lpgpaa~a~mk~ev 223 (769)
T PF05911_consen 209 KLPGPAALAQMKNEV 223 (769)
T ss_pred cCCChHHHHHhHHHH
Confidence 67777666555543
No 372
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=53.04 E-value=90 Score=25.27 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 036551 379 LAQRADA 385 (453)
Q Consensus 379 LE~rVe~ 385 (453)
++.+++.
T Consensus 11 ie~~l~~ 17 (71)
T PF10779_consen 11 IETKLDN 17 (71)
T ss_pred HHHHHHH
Confidence 3333333
No 373
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.03 E-value=1.8e+02 Score=26.57 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 036551 367 RSRLRKQAECDELAQRADALKEENASLR-------SEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 367 RSR~RKqaelEeLE~rVe~Le~EN~~Lr-------~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
.-|.++..+++.++..+...+.+...|+ .++..|++++..++.+...++.+
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~ 167 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKR 167 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555544444444442 23444444444444444444333
No 374
>PHA03011 hypothetical protein; Provisional
Probab=52.86 E-value=85 Score=28.38 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRI-------RNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~L-------kee~~~L~sEN~~Lr~qL~~L 421 (453)
.+++|..+..+|-.|-+-+..++..| -++.+-|++|...||+++..+
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555555555444443 456777888888888887665
No 375
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=52.83 E-value=45 Score=27.91 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTRIR 401 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lk 401 (453)
++.|+++.+.|+.||..|+-|+..|.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555543
No 376
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.82 E-value=70 Score=27.40 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 391 ASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 391 ~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
..|..++..|..+...+..+...|+.+|..
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555544443
No 377
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=52.69 E-value=35 Score=35.19 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+|+=-||.+.+....|...|+.+++.|+.+...++.+.+..|+.|.-|+.+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep 114 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREP 114 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 466677778888888888888888888888888888777777777776653
No 378
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.65 E-value=1e+02 Score=29.35 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
++.|+..++.+......|+..+..|+.++..++.+-..|+.+..
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555544443
No 379
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=52.55 E-value=1.3e+02 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 036551 399 RIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 399 ~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
...+++...+.||..|+..|..-
T Consensus 39 k~tkEL~~Ak~e~~~Lr~dl~aG 61 (125)
T PF03245_consen 39 KYTKELADAKAEIDRLRADLAAG 61 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHHcC
Confidence 34556666777788887777654
No 380
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=52.44 E-value=29 Score=30.38 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 036551 397 VTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 397 l~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
+..|++++.+|+.||..|+.-+.
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555443
No 381
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=52.43 E-value=54 Score=34.51 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 374 AECDELAQRADALKEENASLRS----------EVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~----------el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
++++.|+++++.|+.+...|.. ++..|+++.++++.+..++++-+.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666555555554 355666666666666666665543
No 382
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.31 E-value=94 Score=34.64 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+.+++|+.++..++.+-..+..++..++.+++.+..+...|++++..
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555444444
No 383
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=52.00 E-value=47 Score=26.87 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVTR 399 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~ 399 (453)
++||+.++..|+.|...++.++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777666655
No 384
>PRK06835 DNA replication protein DnaC; Validated
Probab=51.71 E-value=1.2e+02 Score=31.45 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 036551 402 NEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 402 ee~~~L~sEN~~Lr~qL~~L 421 (453)
+.++.|..++..|+++...|
T Consensus 65 ~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 65 ETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554444443
No 385
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.46 E-value=2e+02 Score=29.04 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 036551 400 IRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 400 Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
++.++..++.+...++.+|..
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444443
No 386
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=51.38 E-value=1.3e+02 Score=28.49 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+..|+..+...+.|...|+.-...--+..++|..+...|++.|..
T Consensus 63 v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~ 107 (146)
T PF05852_consen 63 VSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEF 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444332111224455566666666655543
No 387
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.18 E-value=55 Score=28.06 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
+.|+.+++.|+.+...|..++..+++++..|..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 388
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=51.13 E-value=70 Score=34.94 Aligned_cols=92 Identities=29% Similarity=0.379 Sum_probs=0.0
Q ss_pred hhHHHHHHHH----HHHHhHHHHHHHHHH--HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 036551 347 QDERELKRQR----RKQSNRESARRSRLR--KQAECDELAQRAD--------------ALKEENASLRSEVTRIRNEYEQ 406 (453)
Q Consensus 347 ~DErElKReR----RKqsNRESARRSR~R--KqaelEeLE~rVe--------------~Le~EN~~Lr~el~~Lkee~~~ 406 (453)
+-+||+.|.| |.+..--+|--|-.- |++|-|+|+.+++ +...+.+.++.+++-|.++|.+
T Consensus 360 qHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQ 439 (593)
T KOG4807|consen 360 QHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQ 439 (593)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcC------CCccccccccccccccc
Q 036551 407 LLAENASLKERLGEI------PVQEDERSVRNDQHLNN 438 (453)
Q Consensus 407 L~sEN~~Lr~qL~~L------~g~~~is~~rn~q~~~~ 438 (453)
--.||.-|...|..- ++++...++++.|.++|
T Consensus 440 KCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnn 477 (593)
T KOG4807|consen 440 KCLENAHLAQALEAERQALRQCQRENQELNAHNQELNN 477 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
No 389
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.09 E-value=44 Score=37.32 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
.+..++..+..||..|..+|..++++...+..|+.+|.+-|.
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555555555544444433
No 390
>PF13879 KIAA1430: KIAA1430 homologue
Probab=51.07 E-value=1e+02 Score=25.36 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHh
Q 036551 381 QRADALKEENASLRSEVTRI-----------------------RNEYEQLLAENASLKERLG 419 (453)
Q Consensus 381 ~rVe~Le~EN~~Lr~el~~L-----------------------kee~~~L~sEN~~Lr~qL~ 419 (453)
+++.+.+.||..|..++... +.+..++..||..|..+|.
T Consensus 36 er~~~I~reN~~LL~ki~~I~~~~~~~~~~~~~~~~~~n~~~R~~e~~kI~~EN~~l~~RL~ 97 (98)
T PF13879_consen 36 ERQREIERENQILLRKIMEIMRKPGSIDCWNPYRPKSLNAINRKREQRKIDRENQKLLKRLQ 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56677777888888876654 3567788889988888775
No 391
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=50.96 E-value=1e+02 Score=29.82 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 388 EENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 388 ~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.+...++.++..++.+++.++.+...++.++..+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 102 ADLDDAKAAVEAAQADLEAAKASLASAQLNLRYT 135 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3334445555555555666666666666666554
No 392
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=50.95 E-value=42 Score=27.75 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
.|..+++.|+..|..|..-++..+.+++.|........
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~e 39 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYE 39 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666555444333
No 393
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.93 E-value=58 Score=29.22 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 360 SNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAE 410 (453)
Q Consensus 360 sNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sE 410 (453)
..++.....-..=.+....++.+++.++.+...+..++..|.++|..+..+
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444444444333
No 394
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=50.79 E-value=1.8e+02 Score=28.60 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQ--------------RADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~--------------rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
--+++.+-.+|..+|-|+- +.+|+. =..-|+.|-..|+.++..-+.+...++.|+..+..+|.+
T Consensus 96 ~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 96 MQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666654 333332 245678888888888888888888888888877766654
No 395
>PRK14143 heat shock protein GrpE; Provisional
Probab=50.77 E-value=35 Score=34.15 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036551 376 CDELAQRADALKEENASLRSEVT 398 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~ 398 (453)
+++|..++..+.++...++++..
T Consensus 83 ~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 83 LEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 396
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=50.73 E-value=1.1e+02 Score=31.43 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAECD-ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqaelE-eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|++.|-.-|++-.+.=-=+|.+|-|.-.. +|+...++-..--.+|+.+++.|+++.++...-..=||++|..+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~Asl 84 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASL 84 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHH
Confidence 55555555555555555555555554443 44444444333344444444444444444444444444444433
No 397
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.55 E-value=63 Score=32.18 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=42.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 372 KQAECDEL---AQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 372 KqaelEeL---E~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
|..|+++| .+.+..|+.....++.+....++....+..|...|+.++..++..
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555 778888888888888888888888999999999999998888665
No 398
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.32 E-value=1.4e+02 Score=29.64 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
..++..-=|.+.+.|....+..++|+.++..|+.+...|+.++..+++---+.......++..
T Consensus 97 ~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 97 KATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 334444445566667777777778888888888877888888777765544444444444444
No 399
>PHA02109 hypothetical protein
Probab=50.24 E-value=44 Score=32.83 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 372 KQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAE 410 (453)
Q Consensus 372 KqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sE 410 (453)
|-+++-+|+.+++.|..|..+|+.++..++++...-.+|
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888777777777776665554443
No 400
>PRK14127 cell division protein GpsB; Provisional
Probab=49.96 E-value=82 Score=28.23 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 385 ALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 385 ~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.+-.+...|..++..|++++..|+.++..++.++...
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3334555566666666666666666666666655543
No 401
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=49.92 E-value=51 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
+|..++..++.|.+.|+.-|..-..++..|..
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKr 64 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKR 64 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444555555555555444444444443
No 402
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.64 E-value=1.5e+02 Score=31.29 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=6.6
Q ss_pred CCchhHHHHH
Q 036551 40 GDIESWEAVR 49 (453)
Q Consensus 40 ~~~~~~~~~~ 49 (453)
-.|..|+-+.
T Consensus 47 ksisnwdlme 56 (445)
T KOG2891|consen 47 KSISNWDLME 56 (445)
T ss_pred cccchHHHHH
Confidence 3578887653
No 403
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.63 E-value=44 Score=39.14 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|+|+|...+..|+.....|-.+++.|++....|..||..|.+++..+
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444555555555555555554444443
No 404
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.60 E-value=91 Score=33.36 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=36.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcC
Q 036551 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVT--------------RIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~--------------~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
|+..-|-|--|..|+ -+++-+.+.++|+..|+.|..++- .|..-...++.||..|..+|.++
T Consensus 78 rk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 78 RKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344445555554442 233444455555666666555543 34455566777888877777776
Q ss_pred CCc
Q 036551 422 PVQ 424 (453)
Q Consensus 422 ~g~ 424 (453)
...
T Consensus 154 ~~e 156 (401)
T PF06785_consen 154 QQE 156 (401)
T ss_pred HHH
Confidence 543
No 405
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=49.45 E-value=2.5e+02 Score=27.96 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
..|+..+..++.+...+...+..|+.....|+.....|+.++..+
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555554444
No 406
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=49.36 E-value=82 Score=27.29 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
.+++|..+|+.|..+...|...++.++...+....|-..-.++|..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677777777777777777777777777776666666655555543
No 407
>PRK14161 heat shock protein GrpE; Provisional
Probab=49.36 E-value=66 Score=30.85 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRN 402 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lke 402 (453)
++|+.++++|+.....+.+++..++.
T Consensus 29 ~~l~~e~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 29 TALKAEIEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 408
>PLN02678 seryl-tRNA synthetase
Probab=49.23 E-value=47 Score=36.01 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 392 SLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 392 ~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
.|.+++..|++++..|+.+...|.++|..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666555555554
No 409
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.17 E-value=81 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNEYEQLLA 409 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~s 409 (453)
.+|+.+++.++.....|..++..|++++..++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333333
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.10 E-value=1.5e+02 Score=34.17 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 386 LKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 386 Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
|+.+-..|++.-+.|.++++.+...-+.|..++.
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444433344433333
No 411
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.08 E-value=48 Score=38.19 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
++..+...+.....||..|...+..|++.++.|+.|...||..|.++-
T Consensus 42 elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 42 ELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555666666666666666666666666655543
No 412
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=48.90 E-value=1.1e+02 Score=36.68 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=4.7
Q ss_pred CCCCCCCC
Q 036551 114 IMPPYGTP 121 (453)
Q Consensus 114 mmpPYGtP 121 (453)
++|.++.-
T Consensus 571 flpl~~i~ 578 (1163)
T COG1196 571 FLPLDRIK 578 (1163)
T ss_pred cCchhhhc
Confidence 56666663
No 413
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.87 E-value=1.1e+02 Score=34.80 Aligned_cols=41 Identities=37% Similarity=0.485 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Q 036551 381 QRADALKEENASLRSEVTRIRN---EYEQLLAENASLKERLGEI 421 (453)
Q Consensus 381 ~rVe~Le~EN~~Lr~el~~Lke---e~~~L~sEN~~Lr~qL~~L 421 (453)
++..+|+.||-.|++.+..|++ +++.|..|+..|.+++.-+
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ell 213 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELL 213 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3456666777777776666653 4666666666666555444
No 414
>PF14645 Chibby: Chibby family
Probab=48.82 E-value=35 Score=30.62 Aligned_cols=6 Identities=50% Similarity=1.420 Sum_probs=2.8
Q ss_pred cccccc
Q 036551 302 NIGMDY 307 (453)
Q Consensus 302 nigmd~ 307 (453)
++|+||
T Consensus 35 el~ld~ 40 (116)
T PF14645_consen 35 ELGLDY 40 (116)
T ss_pred cccccc
Confidence 445554
No 415
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=48.77 E-value=66 Score=27.84 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 382 RADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+|...-.||..|+.++..|+.=+ ..-|-..|-++|..|
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L 82 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISEL 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence 45556678888888888877655 333344444444443
No 416
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=48.75 E-value=16 Score=40.11 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEV 397 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el 397 (453)
++|+|++|+++|+++...|.+++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44444444444444444443333
No 417
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.72 E-value=1.4e+02 Score=35.88 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYE 405 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~ 405 (453)
...++++|+.|.+.++.+|..|++.+.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444
No 418
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.58 E-value=1.7e+02 Score=27.88 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
++.++..|+.....+...+..|+..+..|+.....|+.+...+..
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555444
No 419
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=48.55 E-value=86 Score=29.41 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 347 QDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 347 ~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
+|=++++.+|.+..+|. .+|++||.||..+...|+. |...|+.+..
T Consensus 1 q~~~~Le~ek~~~~~rI------~~K~~~LqEL~~Q~va~kn------------------Lv~RN~~~~~ 46 (142)
T PF08781_consen 1 QECEELEEEKQRRRERI------KKKKEQLQELILQQVAFKN------------------LVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH------------------HHHHHHHhhh
No 420
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.39 E-value=41 Score=34.77 Aligned_cols=50 Identities=30% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+++-|..++++|+.....|+.++.....+++.+......|+.++..+..+
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555566666666655544
No 421
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=48.37 E-value=1.7e+02 Score=35.33 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 363 ESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 363 ESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+.|+.......+.+..++.+...++.+......++..++.+.++++.+...|...|.-
T Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p 536 (1201)
T PF12128_consen 479 EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDP 536 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3444444444555555555666666665555566666666666666666666555543
No 422
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=48.28 E-value=88 Score=27.55 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 036551 401 RNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 401 kee~~~L~sEN~~Lr~qL~~L 421 (453)
+.+...+...|..|..+|.+.
T Consensus 43 r~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 43 RRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566665555544
No 423
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=48.14 E-value=60 Score=28.13 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCC
Q 036551 382 RADALKEENASLRSEVTRIRNEYEQ--LLAENASLKERLGEIP 422 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~~--L~sEN~~Lr~qL~~L~ 422 (453)
++..++.+|..|.+|+++|+.|... -+.+|...+.+-.+..
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~ 66 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENT 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3344444444444444444444333 3345666666665543
No 424
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=48.08 E-value=1.9e+02 Score=31.52 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=59.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 036551 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDE 427 (453)
Q Consensus 352 lKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~i 427 (453)
.++.-|.+.|...+.--+.- .+-.+.|.++++++..=-..|..++..|..++..|+.+-..|...|..+..+..|
T Consensus 49 ir~~sr~l~~e~~~~t~~~q-~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~i 123 (421)
T KOG2685|consen 49 IRRESRLLVNETNALTDKMQ-RDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLSI 123 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45555566665555444333 3456889999999999999999999999999999999999999999999888764
No 425
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=47.48 E-value=81 Score=26.09 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 375 ECDELAQRADALKEENASLRSEVTRIRNEYEQLLAEN 411 (453)
Q Consensus 375 elEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN 411 (453)
-++.|+.+++.|+.+...|..++..+..++..+..++
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555444
No 426
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=47.31 E-value=87 Score=32.31 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 382 RADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 382 rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
++..|+.....|..++..|..+...|.....+|++++.
T Consensus 228 risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 228 RISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 427
>PRK11239 hypothetical protein; Provisional
Probab=47.31 E-value=30 Score=34.47 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
+.|+.+|..|+.|...|+.++..|..+
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666555443
No 428
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.26 E-value=2.1e+02 Score=29.90 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+|-.+|..|..+-++|+.+-..+.+++..|..+-..+..++..
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444443
No 429
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=47.14 E-value=73 Score=27.53 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYE 405 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~ 405 (453)
-.|+.||+|...|..+...|.....+.+.+++
T Consensus 40 s~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 40 SCLDHLEQRNDHLHAQLQELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888887777777777666555543
No 430
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=47.02 E-value=43 Score=33.01 Aligned_cols=28 Identities=39% Similarity=0.519 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 389 ENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 389 EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
||..|..+|..+.+++..|+.||..|++
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544
No 431
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=46.87 E-value=84 Score=31.07 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYE 405 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~ 405 (453)
+|..++..++.|...|+.=|..-..+|.
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ 75 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAA 75 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333333
No 432
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=46.82 E-value=1.5e+02 Score=29.68 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRI 400 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~L 400 (453)
.+.+..+..+++.|+.++..+..++..+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 161 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRA 161 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554443
No 433
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.68 E-value=1.2e+02 Score=36.71 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 360 SNRESARRSRLRKQAECDELAQRADALKEE 389 (453)
Q Consensus 360 sNRESARRSR~RKqaelEeLE~rVe~Le~E 389 (453)
+..+..+..+.+++.++..|+.++..+..+
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~ 872 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSE 872 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554444444433
No 434
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=46.68 E-value=58 Score=37.73 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=10.1
Q ss_pred CCCccccC----CCCCCCCCCC
Q 036551 104 AHPYMWGV----QHIMPPYGTP 121 (453)
Q Consensus 104 pHPYmWG~----Q~mmpPYGtP 121 (453)
..|--||. -+|-||--.|
T Consensus 42 ~d~s~~~~~~na~~~~Pp~a~t 63 (961)
T KOG4673|consen 42 DDKSDSAAEDNASSMWPPAADT 63 (961)
T ss_pred CCcccccccccCCCCCCCCCCc
Confidence 35666763 4466665543
No 435
>PHA02675 ORF104 fusion protein; Provisional
Probab=46.65 E-value=83 Score=27.47 Aligned_cols=11 Identities=18% Similarity=-0.085 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 036551 349 ERELKRQRRKQ 359 (453)
Q Consensus 349 ErElKReRRKq 359 (453)
|.-+.|..+.+
T Consensus 33 esle~RL~~L~ 43 (90)
T PHA02675 33 ESVEERLVSLL 43 (90)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 436
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=46.64 E-value=1.1e+02 Score=35.36 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 036551 365 ARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQED 426 (453)
Q Consensus 365 ARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~ 426 (453)
+.++..-=|.+++..+.++++++.....+..++..++.+...|+.|+..|+.+|..+...+.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45556666778888889999999999999999999999999999999999999988765544
No 437
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=46.64 E-value=2.8e+02 Score=28.10 Aligned_cols=7 Identities=57% Similarity=0.933 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 036551 413 SLKERLG 419 (453)
Q Consensus 413 ~Lr~qL~ 419 (453)
.++.++.
T Consensus 257 ~~~~~l~ 263 (423)
T TIGR01843 257 ELRERLN 263 (423)
T ss_pred HHHHHHH
Confidence 3333333
No 438
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=46.58 E-value=58 Score=37.18 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
..|++++..|..++++|+... ..|++.|+.+.++|+.|.+-|.-++..+
T Consensus 11 ~ek~~E~~~l~~~~~~lk~~~---~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 11 QEKQKERQALKSSVEELKESH---EEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PRK10698 phage shock protein PspA; Provisional
Probab=46.45 E-value=2.5e+02 Score=27.54 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 381 QRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 381 ~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
.++..|+.+...+...+..|+.++..|+.....++.+-..|.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544443
No 440
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=46.44 E-value=51 Score=38.27 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=35.5
Q ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 036551 357 RKQSNRESARRSR-LRKQAECDELAQRADALKEENASLRSEVTRIRNE-------YEQLLAENASLKERLGE 420 (453)
Q Consensus 357 RKqsNRESARRSR-~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee-------~~~L~sEN~~Lr~qL~~ 420 (453)
..+++|.-.-+.- .||+.++..|..+++.+..++..++..|..|++. +..|.+++..|+.+|..
T Consensus 283 ~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~ 354 (775)
T PF10174_consen 283 LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE 354 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3345443333333 3455577777777777776666666666655544 44555555555555443
No 441
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=46.30 E-value=95 Score=33.71 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCccccCCCC
Q 036551 114 IMPPYGTPPHPYVAMYPHGG 133 (453)
Q Consensus 114 mmpPYGtP~~PY~A~Yp~Gg 133 (453)
++-|.|+ |.|-++|.-++
T Consensus 71 ~en~s~~--~~~~~~~~~~~ 88 (411)
T KOG1318|consen 71 LENPSGY--HIQQTIRGSEG 88 (411)
T ss_pred ccCCCCc--cceeeeecccc
Confidence 6667777 58888888777
No 442
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.29 E-value=2.4e+02 Score=31.26 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 371 RKQAECDELAQRADALKEENASLRSEVTR 399 (453)
Q Consensus 371 RKqaelEeLE~rVe~Le~EN~~Lr~el~~ 399 (453)
+..+++..+..++..++.++..|..+++.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~ 92 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEA 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555544444
No 443
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=46.24 E-value=1.1e+02 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 036551 359 QSNRESARRSRLRKQAECDELAQRA 383 (453)
Q Consensus 359 qsNRESARRSR~RKqaelEeLE~rV 383 (453)
..-|+.|...+.+=..+|++|...+
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777888877554
No 444
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=46.19 E-value=59 Score=33.06 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTR 399 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~ 399 (453)
++++++..+++.|++||+.|++.+..
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36777788888888888888876554
No 445
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=46.09 E-value=82 Score=30.36 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENAS 413 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~ 413 (453)
.+++..|+.+.+.|+.+|..|+.++..+.+.+..|..--..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888888887777655433
No 446
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.00 E-value=71 Score=32.91 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 365 ARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQ 406 (453)
Q Consensus 365 ARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~ 406 (453)
++..=..++.++.+|+.+++.|+.+......+...|+.+.+.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555555544444444444444333
No 447
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=45.92 E-value=80 Score=30.84 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.+.+.++.+|..|+.++..|..+|...+.++..+..+.......|..+
T Consensus 190 ~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~~ 237 (237)
T PF00261_consen 190 NRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNEM 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 448
>PF15456 Uds1: Up-regulated During Septation
Probab=45.87 E-value=2.4e+02 Score=25.73 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 350 RELKRQRRKQSNRESARRSRLRKQAECDELAQRADAL 386 (453)
Q Consensus 350 rElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~L 386 (453)
+++||+-+.+.+|.-+-|.+..=...+-+....+..|
T Consensus 25 e~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 25 EELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788998988888777665554444444444444444
No 449
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=45.73 E-value=1.1e+02 Score=30.83 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 362 RESARRSRLRKQAE----CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 362 RESARRSR~RKqae----lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
=+|+=..-.||.-. -..++.+++.|+.++..|...+..++.+++.-+.-+.++++-
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~i 228 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREI 228 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 35666666676543 345778899999999999999999988887776666666543
No 450
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.66 E-value=1.4e+02 Score=30.78 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERL 418 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL 418 (453)
...++++++++.++..|+.+...|..+++....+...|+.+......+|
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555555555555555555555555555555555555554444443
No 451
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=45.61 E-value=26 Score=28.52 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 036551 379 LAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDE 427 (453)
Q Consensus 379 LE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~i 427 (453)
|+.+|..++.-..-|+.+-... +..|-.|...|+.+..+|.-+-..
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL~m 46 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKLIM 46 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceeeee
Confidence 3556666665555555554432 445778888888888887755443
No 452
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.60 E-value=1.9e+02 Score=30.62 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 036551 91 PMPPHGF 97 (453)
Q Consensus 91 ~~pP~~f 97 (453)
+++.|+|
T Consensus 25 pl~r~yF 31 (359)
T PF10498_consen 25 PLSRHYF 31 (359)
T ss_pred CCCHHHh
Confidence 4444433
No 453
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.45 E-value=56 Score=33.97 Aligned_cols=8 Identities=50% Similarity=0.671 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 036551 375 ECDELAQR 382 (453)
Q Consensus 375 elEeLE~r 382 (453)
++++|..+
T Consensus 90 EI~eLksQ 97 (305)
T PF15290_consen 90 EIDELKSQ 97 (305)
T ss_pred HHHHHHHH
Confidence 34444433
No 454
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=45.11 E-value=51 Score=28.86 Aligned_cols=27 Identities=7% Similarity=0.040 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 377 DELAQRADALKEENASLRSEVTRIRNE 403 (453)
Q Consensus 377 EeLE~rVe~Le~EN~~Lr~el~~Lkee 403 (453)
.+++.++..|++++..|+.|+..|++.
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 455
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=45.10 E-value=60 Score=34.92 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=4.6
Q ss_pred CCCccccC
Q 036551 104 AHPYMWGV 111 (453)
Q Consensus 104 pHPYmWG~ 111 (453)
+.|++|+.
T Consensus 411 ~~p~~~~~ 418 (562)
T TIGR01628 411 GQPLGWPR 418 (562)
T ss_pred CCCCCCCC
Confidence 34667763
No 456
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=45.02 E-value=40 Score=34.42 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 385 ALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 385 ~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
.|+.++..|+.++..++.++..+..|...|+++|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555555555555555443
No 457
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=44.90 E-value=1.7e+02 Score=26.27 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
+|..++..-+.....+..|+..|.=.+++|......|..+|.
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444
No 458
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=44.36 E-value=1.7e+02 Score=28.56 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 363 ESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 363 ESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
.+.-|+|-.|.+ ++-..+++.|+.++..|+.+|+....+++.|+.=-++|-
T Consensus 114 L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLS 164 (179)
T PF13942_consen 114 LSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLS 164 (179)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 455556666555 566678888888888888888888888777766555553
No 459
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=44.32 E-value=2.2e+02 Score=24.89 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
-.++.+|..+.+.-.. +..+..++..++.++..-+.....++.-+..+
T Consensus 37 ~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l 84 (106)
T PF05837_consen 37 AQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333 55666677777777777776666666655544
No 460
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=44.26 E-value=2.9e+02 Score=26.36 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 347 QDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIR 401 (453)
Q Consensus 347 ~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lk 401 (453)
.+|++.||.+-..-.+.-...-=.|+.....+.+.+..+-+.|-..|..+-..|+
T Consensus 46 ~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q 100 (157)
T PF15236_consen 46 IEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQ 100 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4678877777665555555554444444444554444444444444444433333
No 461
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.24 E-value=1.7e+02 Score=30.84 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 036551 391 ASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQ 424 (453)
Q Consensus 391 ~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~ 424 (453)
+.|-.-|...++++.+|..+-..|+.++.+|++.
T Consensus 86 qdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD 119 (389)
T KOG4687|consen 86 QDLAADIEETKEENLKLRTDREALLDQKADLHGD 119 (389)
T ss_pred hHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhch
Confidence 4455556666667777777777777777776664
No 462
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.20 E-value=1.1e+02 Score=32.55 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 389 ENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 389 EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
.-..|......|.+++.+|..+...|+++|...
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555556666666666666666666666665
No 463
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.10 E-value=78 Score=35.24 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEV 397 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el 397 (453)
++++.||.+++.|+.+...|..++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777666655554
No 464
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=43.94 E-value=28 Score=33.83 Aligned_cols=16 Identities=38% Similarity=0.964 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCccccCC
Q 036551 114 IMPPYGTPPHPYVAMYPH 131 (453)
Q Consensus 114 mmpPYGtP~~PY~A~Yp~ 131 (453)
..+|||-||.|| .|=+
T Consensus 158 ~~apy~~~p~p~--ryr~ 173 (182)
T PF06495_consen 158 YFAPYPRPPAPF--RYRA 173 (182)
T ss_pred ccCccCCCCCCc--cccC
Confidence 456788887666 5544
No 465
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=43.93 E-value=32 Score=36.01 Aligned_cols=31 Identities=39% Similarity=0.533 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 392 SLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 392 ~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
--+.+|..+-+.+.+|+.|++.|+.+|..+.
T Consensus 286 PTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 286 PTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666666665554
No 466
>PLN02320 seryl-tRNA synthetase
Probab=43.82 E-value=1.4e+02 Score=33.09 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 393 LRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 393 Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
|.++...|++++..|+.+...+.++|.
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 467
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=43.65 E-value=1.3e+02 Score=36.26 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 355 QRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 355 eRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
.+-.+.||+=-..--+++-..++++-.+.-.|+.++..|..++..|.+++.++...+..|+
T Consensus 375 lkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 375 LKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677766666666666677777777777777777666666666666665555555444
No 468
>COG4420 Predicted membrane protein [Function unknown]
Probab=43.58 E-value=1e+02 Score=30.30 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
++-++++..|..+++.|......++.++..+++...++..+.....+
T Consensus 130 lkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~ 176 (191)
T COG4420 130 LKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEA 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHH
Confidence 34444555555555555555555555555544444444444443333
No 469
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=43.56 E-value=1.6e+02 Score=26.87 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=51.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 356 RRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKE 416 (453)
Q Consensus 356 RRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~ 416 (453)
.|-++.|...---|.-=++.+..||-++..++.-|..|..+|..|.-.+.+.++.+..|+.
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4566677777777777788999999999999999999999999999988888888777654
No 470
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=43.51 E-value=77 Score=35.58 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~q 417 (453)
.=..+||.+|+.+=.+.+.|+++++.|..++.+++.|...++.+
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888888877777777777777777777777777777766
No 471
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=43.45 E-value=1.7e+02 Score=23.33 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 036551 400 IRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 400 Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
-+++...+..+...|.+.|..|
T Consensus 44 er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 44 EREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555666666666665543
No 472
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.32 E-value=1.6e+02 Score=37.68 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+...|++++-.+-=..-++...+=.++++..+.....++.+...|..++..+.++.+.|..+|..|..+|.++
T Consensus 1431 ~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1431 AALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.14 E-value=1.3e+02 Score=33.99 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+...+..+.--.+-++-|.-+.+=+.-+.-++.=+..++..++.+-..+..|+++++..+.|+..|+++...|
T Consensus 248 ~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 248 EEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=43.04 E-value=50 Score=29.68 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 388 EENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 388 ~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
.+...|++++..|.||+.-|.-++..|...|.+...
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtetta 107 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTA 107 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 475
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=43.03 E-value=22 Score=39.12 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAE 410 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sE 410 (453)
++++.|+ |+++|++|.++|++++..|++++.+++..
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhHh
No 476
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=43.02 E-value=87 Score=29.04 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDE 427 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~i 427 (453)
++.+..+..+...++.+.......+..+++++..+..+...|+..+..+..+..+
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 477
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=42.76 E-value=8.8 Score=33.77 Aligned_cols=45 Identities=31% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+.+|+.+.-.|-++.+.|..++..|+.+.++|..+...|..+...
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------------------HT-
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 478
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=42.73 E-value=1.9e+02 Score=32.20 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 350 RELKRQRRKQSN-RESARRSRLRKQAECDELAQRADALKEEN--------------ASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 350 rElKReRRKqsN-RESARRSR~RKqaelEeLE~rVe~Le~EN--------------~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
++.++.++++++ ....++--.+=.++++.||.++++|+.+. ..|..++..++++++.+..+=.+|
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l 624 (638)
T PRK10636 545 KDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEA 624 (638)
T ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhcC
Q 036551 415 KERLGEI 421 (453)
Q Consensus 415 r~qL~~L 421 (453)
.++|.++
T Consensus 625 ~~~~~~~ 631 (638)
T PRK10636 625 QEQLEQM 631 (638)
T ss_pred HHHHHHH
No 479
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.73 E-value=1.6e+02 Score=36.05 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 346 LQDERELKRQRRKQSNRES---ARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 346 l~DErElKReRRKqsNRES---ARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
++...++++.++..-+|+= ++.+-....+.+.+++.+...|++++..|..++..+++....+..++..+-.....+.
T Consensus 470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred Cccc
Q 036551 423 VQED 426 (453)
Q Consensus 423 g~~~ 426 (453)
...+
T Consensus 550 ~~~~ 553 (1317)
T KOG0612|consen 550 EAEL 553 (1317)
T ss_pred Hhhh
No 480
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=42.64 E-value=76 Score=31.35 Aligned_cols=51 Identities=35% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHh
Q 036551 370 LRKQAECDELAQRADALKEENASLRSEVTR------------------------------IRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 370 ~RKqaelEeLE~rVe~Le~EN~~Lr~el~~------------------------------Lkee~~~L~sEN~~Lr~qL~ 419 (453)
.|++.+.+-|..++..|+.|+..|+..+.. |+.+.+.|.+|...+|.+..
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Q ss_pred c
Q 036551 420 E 420 (453)
Q Consensus 420 ~ 420 (453)
.
T Consensus 156 ~ 156 (202)
T PF06818_consen 156 E 156 (202)
T ss_pred H
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.62 E-value=1.8e+02 Score=35.68 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhc
Q 036551 350 RELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIR--------NEYEQLLAENASLKERLGE 420 (453)
Q Consensus 350 rElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lk--------ee~~~L~sEN~~Lr~qL~~ 420 (453)
....+.......-..++.-+.+.++++++++.+++.|+.+-..|..++..|+ +++..|+.+.+.+...+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~ 351 (1353)
T TIGR02680 273 SAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAAD 351 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=42.60 E-value=1.1e+02 Score=33.39 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 346 LQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLK 415 (453)
Q Consensus 346 l~DErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr 415 (453)
++-|.|.||.+|.+..-+.+=.--..-..-.+.|+.++...+++...|+.+...|+.+...-.++++.+.
T Consensus 416 v~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~sr~s~kKm~e 485 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQVSRESEKKMLE 485 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcc
No 483
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.54 E-value=1.1e+02 Score=25.91 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 376 CDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 376 lEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
..+||.|+.+|+.....-..-|+.|...+.........++.+|..|
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK14158 heat shock protein GrpE; Provisional
Probab=42.48 E-value=62 Score=31.54 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+.+.++..|+.+...|..++..|+.++..+.+|...+|.++..
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=42.44 E-value=55 Score=35.46 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 367 RSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQL 407 (453)
Q Consensus 367 RSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L 407 (453)
|.=+++.+++.|++.+.+.|+..|+.|..+++.|+.++..+
T Consensus 283 r~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 283 RELQQTLQRARELENRQKKLESTNQELALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHh
No 486
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=42.43 E-value=1.5e+02 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPV 423 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g 423 (453)
....+.+..++.|+..-..-..+...|.+++..|......|-+++..|..
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs~ 70 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLSQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 487
>PRK11020 hypothetical protein; Provisional
Probab=42.42 E-value=1.1e+02 Score=28.05 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSE-----VTRIRNEYEQLLAENASLKER 417 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~e-----l~~Lkee~~~L~sEN~~Lr~q 417 (453)
++++..|..+++.++.....+..+ +.++..|++.|..|...|+.+
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=42.37 E-value=1.7e+02 Score=29.28 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 349 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLR-----SEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 349 ErElKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr-----~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+++.+|.+.+.+.....+.-....+..++.++.+++.++.+...+. .++..++.+...++.+...++..|..+
T Consensus 127 ~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~~~ 204 (331)
T PRK03598 127 QNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQDT 204 (331)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 489
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=42.31 E-value=84 Score=33.09 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASL 414 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~L 414 (453)
++.++.+-..+..|..+|..|..+++.|+++..+|..++..+
T Consensus 129 ~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 129 RELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=42.23 E-value=58 Score=27.47 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 374 AECDELAQRADALKEENASLRSEVTRIRNEYEQLL 408 (453)
Q Consensus 374 aelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~ 408 (453)
..+.+|+.+++.|+.+...+..++..++.+..-|.
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 491
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=42.13 E-value=78 Score=32.53 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036551 352 LKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQ 406 (453)
Q Consensus 352 lKReRRKqsNRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~ 406 (453)
.|..|+++.+....=+.+.-.-..+..||+++..++++|.....+|..++.+.-+
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lK 197 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLK 197 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
No 492
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=41.97 E-value=38 Score=38.58 Aligned_cols=62 Identities=21% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccc
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIPVQEDERSVRNDQHLNN 438 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~g~~~is~~rn~q~~~~ 438 (453)
+..-+.++++++.|+.|.-.-+.+.+. ++++|+.||++|| +|--+.....|...+--..+++
T Consensus 225 ~K~~vs~~e~i~~LQeE~l~tQ~kYQr---eLErlEKENkeLr-~lll~kd~k~i~~kklKkSLID 286 (980)
T KOG0447|consen 225 QKRKVSDKEKIDQLQEELLHTQLKYQR---ILERLEKENKELR-KLVLQKDDKGIHHRKLKKSLID 286 (980)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHH-HHHhhccchhhHHHHHHHHHHH
No 493
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.94 E-value=1.5e+02 Score=30.14 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCcc
Q 036551 363 ESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIR----NEYEQLLAENASLKERLGEIPVQE 425 (453)
Q Consensus 363 ESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lk----ee~~~L~sEN~~Lr~qL~~L~g~~ 425 (453)
+..+.--.+-.+++..+++++.+|..|...|...+...+ +....++.+...|+..+.......
T Consensus 46 ~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G 112 (247)
T COG3879 46 SVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTG 112 (247)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcC
No 494
>PRK14153 heat shock protein GrpE; Provisional
Probab=41.87 E-value=60 Score=31.66 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 374 AECDELA--QRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 374 aelEeLE--~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
++.++|. .++..+..+...|..++..|+.++..+.+|...+|.++..
T Consensus 24 ~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 24 EEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred HHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.75 E-value=1.3e+02 Score=34.21 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036551 363 ESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEI 421 (453)
Q Consensus 363 ESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L 421 (453)
+|-+.-..-+.+|.+.|..+...++..+..|..++..|+++..........|...|..|
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.68 E-value=1.1e+02 Score=30.75 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 367 RSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 367 RSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
+.|.-+|..++.+.+-+..++.+...|..++..|..+.++. |+.||.++.
T Consensus 156 k~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~ 205 (243)
T cd07666 156 KRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWE 205 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 497
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=41.66 E-value=2e+02 Score=30.42 Aligned_cols=63 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036551 356 RRKQSN--RESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLG 419 (453)
Q Consensus 356 RRKqsN--RESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~ 419 (453)
+|+++| +|=||-+-+|.+.+ +.|..+-+.++.....|..++..+.++-+.|..+-++..+-|.
T Consensus 7 k~ri~~li~~la~~~~~~e~~~-~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~ 71 (328)
T PF15369_consen 7 KRRIANLIKELARVSEEKEVTE-ERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLS 71 (328)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 498
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.39 E-value=90 Score=26.73 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036551 378 ELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGEIP 422 (453)
Q Consensus 378 eLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~L~ 422 (453)
....-+..|+.....|..++..|..+...+..+...|+.+|..+.
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>PRK14162 heat shock protein GrpE; Provisional
Probab=41.35 E-value=40 Score=32.81 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 373 QAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 373 qaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
+++-.+...++..|+.+...|..++..|+.++..+.+|...+|.+...
T Consensus 31 ~~~~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 31 KEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=41.33 E-value=1.7e+02 Score=35.45 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036551 350 RELKRQRRKQS----NRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAENASLKERLGE 420 (453)
Q Consensus 350 rElKReRRKqs----NRESARRSR~RKqaelEeLE~rVe~Le~EN~~Lr~el~~Lkee~~~L~sEN~~Lr~qL~~ 420 (453)
.|+++.+..+. -|+++..--+.+.++++.+++..+++++++.+|.++++.|+++..+...+..+-+.+...
T Consensus 149 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (1123)
T PRK11448 149 QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITD 223 (1123)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Done!