Your job contains 1 sequence.
>036554
SGRGGGRERFRGGRFEDRTHSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELE
SVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036554
(105 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135605 - symbol:AT4G12640 species:3702 "Arabi... 326 2.4e-28 1
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 153 9.4e-10 1
UNIPROTKB|Q8NDT2 - symbol:RBM15B "Putative RNA-binding pr... 147 1.0e-09 2
UNIPROTKB|F1SIZ8 - symbol:RBM15B "Uncharacterized protein... 147 1.1e-09 2
UNIPROTKB|E2RPV8 - symbol:RBM15B "Uncharacterized protein... 147 1.1e-09 2
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 140 1.1e-09 1
UNIPROTKB|F6RM04 - symbol:RBM15B "Uncharacterized protein... 147 1.2e-09 2
ZFIN|ZDB-GENE-080204-91 - symbol:rbm15b "RNA binding moti... 149 1.5e-09 1
RGD|1305937 - symbol:Rbm15b "RNA binding motif protein 15... 147 2.1e-09 1
UNIPROTKB|E1C9H9 - symbol:MANF "Uncharacterized protein" ... 146 2.7e-09 1
MGI|MGI:1923598 - symbol:Rbm15b "RNA binding motif protei... 147 4.0e-09 1
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 141 1.3e-08 1
FB|FBgn0027548 - symbol:nito "spenito" species:7227 "Dros... 140 1.9e-08 1
UNIPROTKB|F1NRZ4 - symbol:LOC100859595 "Uncharacterized p... 132 2.3e-08 2
UNIPROTKB|J9PBG8 - symbol:RBM15 "Uncharacterized protein"... 132 3.8e-08 2
UNIPROTKB|F1S620 - symbol:RBM15 "Uncharacterized protein"... 132 3.8e-08 2
UNIPROTKB|E2R9C6 - symbol:RBM15 "Uncharacterized protein"... 132 3.8e-08 2
UNIPROTKB|Q96T37 - symbol:RBM15 "Putative RNA-binding pro... 132 3.8e-08 2
UNIPROTKB|F1S619 - symbol:RBM15 "Uncharacterized protein"... 132 3.9e-08 2
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 120 1.3e-07 2
ZFIN|ZDB-GENE-070928-29 - symbol:alyref "Aly/REF export f... 125 1.4e-07 1
FB|FBgn0011305 - symbol:Rsf1 "Repressor splicing factor 1... 120 1.4e-07 1
UNIPROTKB|E1BFX6 - symbol:RBM15 "Uncharacterized protein"... 132 1.7e-07 1
CGD|CAL0004922 - symbol:orf19.6766 species:5476 "Candida ... 124 3.6e-07 1
UNIPROTKB|Q5ADS5 - symbol:NOP13 "Putative uncharacterized... 124 3.6e-07 1
MGI|MGI:1341044 - symbol:Alyref "Aly/REF export factor" s... 120 3.9e-07 1
UNIPROTKB|Q3T0I4 - symbol:ALYREF "THO complex subunit 4" ... 120 4.0e-07 1
UNIPROTKB|F1PL92 - symbol:ALYREF "Uncharacterized protein... 120 4.0e-07 1
UNIPROTKB|Q86V81 - symbol:ALYREF "THO complex subunit 4" ... 120 4.0e-07 1
UNIPROTKB|E9PB61 - symbol:ALYREF "THO complex subunit 4" ... 120 4.3e-07 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 129 4.4e-07 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 115 4.8e-07 1
DICTYBASE|DDB_G0272108 - symbol:DDB_G0272108 "RNA-binding... 123 6.2e-07 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 115 8.4e-07 1
ZFIN|ZDB-GENE-041008-192 - symbol:rbm15 "RNA binding moti... 125 8.6e-07 1
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z... 118 1.1e-06 1
MGI|MGI:1913144 - symbol:Alyref2 "Aly/REF export factor 2... 114 1.2e-06 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 115 1.6e-06 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 122 1.9e-06 1
UNIPROTKB|E1C2L5 - symbol:THOC4 "Uncharacterized protein"... 114 1.9e-06 1
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 113 2.4e-06 1
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 113 2.4e-06 1
WB|WBGene00004386 - symbol:rnp-3 species:6239 "Caenorhabd... 111 2.5e-06 1
UNIPROTKB|Q21323 - symbol:rnp-3 "Protein RNP-3" species:6... 111 2.5e-06 1
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ... 108 2.6e-06 1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"... 108 2.6e-06 1
FB|FBgn0030571 - symbol:CG14414 species:7227 "Drosophila ... 110 2.7e-06 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 115 3.1e-06 1
UNIPROTKB|F5H0I5 - symbol:NOL8 "Nucleolar protein 8" spec... 107 3.4e-06 1
UNIPROTKB|F5H532 - symbol:NOL8 "Nucleolar protein 8" spec... 107 3.4e-06 1
UNIPROTKB|F5H8B8 - symbol:NOL8 "Nucleolar protein 8" spec... 107 3.4e-06 1
SGD|S000005119 - symbol:NOP13 "Nucleolar protein found in... 115 3.6e-06 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 115 3.8e-06 1
DICTYBASE|DDB_G0278349 - symbol:tra2 "putative transforme... 113 4.0e-06 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 115 4.1e-06 1
ZFIN|ZDB-GENE-030131-2841 - symbol:snrpa "small nuclear r... 111 5.0e-06 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 115 5.3e-06 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 115 5.3e-06 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 115 5.3e-06 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 115 5.4e-06 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 115 5.4e-06 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 115 5.4e-06 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 115 5.4e-06 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 115 5.4e-06 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 114 5.7e-06 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 113 6.7e-06 1
TAIR|locus:2114643 - symbol:SR34a "Serine/Arginine-Rich P... 110 7.3e-06 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 112 7.4e-06 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 112 7.4e-06 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 114 7.4e-06 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 112 8.1e-06 1
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 109 8.3e-06 1
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 109 8.3e-06 1
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 109 8.3e-06 1
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 109 8.3e-06 1
ASPGD|ASPL0000053720 - symbol:AN0109 species:162425 "Emer... 108 8.3e-06 1
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 109 8.5e-06 1
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 109 8.7e-06 1
UNIPROTKB|F1MB97 - symbol:SPEN "Uncharacterized protein" ... 114 8.8e-06 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 103 9.0e-06 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 113 9.0e-06 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 99 9.7e-06 2
UNIPROTKB|F5H540 - symbol:NOL8 "Nucleolar protein 8" spec... 107 1.1e-05 1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 108 1.2e-05 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 113 1.2e-05 1
WB|WBGene00004705 - symbol:rsp-8 species:6239 "Caenorhabd... 108 1.3e-05 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 102 1.3e-05 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 111 1.4e-05 1
GENEDB_PFALCIPARUM|MAL13P1.35 - symbol:MAL13P1.35 "u1 sma... 110 1.5e-05 1
UNIPROTKB|C0H5A4 - symbol:MAL13P1.35 "U1 small nuclear ri... 110 1.5e-05 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 101 1.5e-05 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 101 1.5e-05 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 101 1.5e-05 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 101 1.5e-05 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 101 1.5e-05 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 101 1.5e-05 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 101 1.5e-05 1
MGI|MGI:1891706 - symbol:Spen "SPEN homolog, transcriptio... 120 1.5e-05 1
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 104 1.9e-05 1
UNIPROTKB|F1P7J0 - symbol:SFPQ "Uncharacterized protein" ... 100 2.0e-05 2
WARNING: Descriptions of 285 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2135605 [details] [associations]
symbol:AT4G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 IPI:IPI00546459 RefSeq:NP_193001.2
UniGene:At.46444 ProteinModelPortal:F4JRD9 SMR:F4JRD9 PRIDE:F4JRD9
EnsemblPlants:AT4G12640.1 GeneID:826877 KEGG:ath:AT4G12640
OMA:ERNYEAG Uniprot:F4JRD9
Length = 823
Score = 326 (119.8 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 60/81 (74%), Positives = 69/81 (85%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
GR PPSRHLWVGNL H I E L D+FLRFGELES+AFQPGRSYAF+NF +EDA A+
Sbjct: 15 GRGRNPPSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAA 74
Query: 85 MKALQGFPLAGNPLRIEFAKA 105
+++LQGFPL+GNPLRIEFAKA
Sbjct: 75 IESLQGFPLSGNPLRIEFAKA 95
Score = 126 (49.4 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 28 NTPPSRHLWVG-NLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMK 86
N PS L++G S +++A L + F FGE+ V PGRSYAF+ F+ A + +
Sbjct: 146 NAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKE 205
Query: 87 ALQGFPLAGNP-LRIEFAKA 105
+LQG L GNP + I FAK+
Sbjct: 206 SLQG-KLFGNPRVHICFAKS 224
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 153 (58.9 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 28/73 (38%), Positives = 51/73 (69%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGF 91
S +LWVG+L+ E++LT+ F R+G+++ + R +AFI ++ E+A+A+ +ALQG
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 92 PLAGNPLRIEFAK 104
L G+ ++IE+A+
Sbjct: 77 NLNGSQIKIEYAR 89
Score = 136 (52.9 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 25/75 (33%), Positives = 48/75 (64%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG 90
P + LWVG + N+ + +L ++F +FG++E F R AFI++ +DA+ + K++ G
Sbjct: 93 PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 151
Query: 91 FPLAGNPLRIEFAKA 105
P+ G+ LR++F ++
Sbjct: 152 KPMGGSFLRVDFLRS 166
Score = 102 (41.0 bits), Expect = 0.00026, P = 0.00026
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 20 HSGGGGRANTPPSRHLWVG---NLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFK 76
HS + + PS+ LW+G + +E L + + FGE+E V P R++A + F+
Sbjct: 193 HSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFR 252
Query: 77 IEEDAIASMKALQGFPLAGNPLRIE 101
E+A + LQG L NP RI+
Sbjct: 253 SAEEARQCKEGLQG-RLFNNP-RIK 275
>UNIPROTKB|Q8NDT2 [details] [associations]
symbol:RBM15B "Putative RNA-binding protein 15B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006913
"nucleocytoplasmic transport" evidence=IDA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0019048 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 InterPro:IPR012921
Pfam:PF07744 GO:GO:0000381 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
EMBL:AC092037 InterPro:IPR010912 EMBL:AL831838 EMBL:BC001367
EMBL:AY545557 IPI:IPI00175136 RefSeq:NP_037418.3 UniGene:Hs.118738
UniGene:Hs.731737 ProteinModelPortal:Q8NDT2 SMR:Q8NDT2
IntAct:Q8NDT2 STRING:Q8NDT2 PhosphoSite:Q8NDT2 DMDM:229463030
PaxDb:Q8NDT2 PeptideAtlas:Q8NDT2 PRIDE:Q8NDT2 DNASU:29890
Ensembl:ENST00000323686 Ensembl:ENST00000563281 GeneID:29890
KEGG:hsa:29890 UCSC:uc003dbd.3 CTD:29890 GeneCards:GC03P051428
HGNC:HGNC:24303 HPA:HPA036645 MIM:612602 neXtProt:NX_Q8NDT2
PharmGKB:PA134870079 HOGENOM:HOG000006547 HOVERGEN:HBG058366
InParanoid:Q8NDT2 KO:K13190 OMA:KRDSERN OrthoDB:EOG42RD6Z
GenomeRNAi:29890 NextBio:52441 ArrayExpress:Q8NDT2 Bgee:Q8NDT2
CleanEx:HS_RBM15B Genevestigator:Q8NDT2 GermOnline:ENSG00000179837
Uniprot:Q8NDT2
Length = 890
Score = 147 (56.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 410 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 467
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 468 AACAKMRGFPLGGPDRRLRVDFAKA 492
Score = 115 (45.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 336 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 395
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 396 AMSGRVIGRNPIKIGYGKA 414
Score = 30 (15.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 21 SGGGGR 26
+GGGGR
Sbjct: 90 AGGGGR 95
>UNIPROTKB|F1SIZ8 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 KO:K13190 OMA:KRDSERN
GeneTree:ENSGT00530000063730 EMBL:CU633548 RefSeq:XP_003132286.1
Ensembl:ENSSSCT00000012500 GeneID:100519215 KEGG:ssc:100519215
Uniprot:F1SIZ8
Length = 893
Score = 147 (56.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 413 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 470
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 471 AACAKMRGFPLGGPDRRLRVDFAKA 495
Score = 115 (45.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 339 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 398
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 399 AMSGRVIGRNPIKIGYGKA 417
Score = 30 (15.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 21 SGGGGR 26
+GGGGR
Sbjct: 90 AGGGGR 95
>UNIPROTKB|E2RPV8 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 KO:K13190 OMA:KRDSERN
GeneTree:ENSGT00530000063730 EMBL:AAEX03012206
RefSeq:XP_003639807.1 Ensembl:ENSCAFT00000016286 GeneID:100855610
KEGG:cfa:100855610 Uniprot:E2RPV8
Length = 898
Score = 147 (56.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 419 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 476
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 477 AACAKMRGFPLGGPDRRLRVDFAKA 501
Score = 115 (45.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 345 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 404
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 405 AMSGRVIGRNPIKIGYGKA 423
Score = 30 (15.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 21 SGGGGR 26
+GGGGR
Sbjct: 90 AGGGGR 95
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/83 (38%), Positives = 49/83 (59%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPG----RSYAFINFKIEED 80
++ PS L++G LS +++E +L D F FGE+ V A+ G R + F++F E D
Sbjct: 35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94
Query: 81 AIASMKALQGFPLAGNPLRIEFA 103
A+++ A+ G L G PLRI FA
Sbjct: 95 ALSAKDAMDGKGLLGRPLRISFA 117
>UNIPROTKB|F6RM04 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:DAAA02054396 IPI:IPI00705216 Ensembl:ENSBTAT00000008515
OMA:ISHELDD Uniprot:F6RM04
Length = 940
Score = 147 (56.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 463 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 520
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 521 AACAKMRGFPLGGPDRRLRVDFAKA 545
Score = 111 (44.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 389 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 448
Query: 87 ALQGFPLAGNPLRIEFAKA 105
+ G + NP++I + KA
Sbjct: 449 GMSGRVIGRNPIKIGYGKA 467
Score = 30 (15.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 21 SGGGGR 26
+GGGGR
Sbjct: 139 AGGGGR 144
>ZFIN|ZDB-GENE-080204-91 [details] [associations]
symbol:rbm15b "RNA binding motif protein 15B"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-080204-91 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063730 EMBL:CU856621
IPI:IPI00931594 Ensembl:ENSDART00000136125 Bgee:E9QBX7
Uniprot:E9QBX7
Length = 630
Score = 149 (57.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ + G ++A+I+++ + A
Sbjct: 342 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDYVKGDNFAYIHYESLDAAQ 399
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 400 AACAQMRGFPLGGPSRRLRVDFAKA 424
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL HNI E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 268 TRNLFIGNLDHNITEVELRQGFDKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 327
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+QG + GNP++I + KA
Sbjct: 328 AMQGRMINGNPIKIGYGKA 346
>RGD|1305937 [details] [associations]
symbol:Rbm15b "RNA binding motif protein 15B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006913
"nucleocytoplasmic transport" evidence=ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305937 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473954 InterPro:IPR012921
Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
OrthoDB:EOG42RD6Z GeneTree:ENSGT00530000063730 IPI:IPI00768794
Ensembl:ENSRNOT00000018995 UCSC:RGD:1305937 Uniprot:D3ZHD6
Length = 564
Score = 147 (56.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 83 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 140
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 141 AACAKMRGFPLGGPDRRLRVDFAKA 165
Score = 115 (45.5 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 9 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 68
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 69 AMSGRVIGRNPIKIGYGKA 87
>UNIPROTKB|E1C9H9 [details] [associations]
symbol:MANF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 OMA:KRDSERN GeneTree:ENSGT00530000063730
EMBL:AADN02056521 IPI:IPI00572917 ProteinModelPortal:E1C9H9
Ensembl:ENSGALT00000003739 Uniprot:E1C9H9
Length = 557
Score = 146 (56.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L + A L +F RFG + ++ + G S+A+I ++ + A
Sbjct: 83 GYGKAN--PTTRLWVGGLGPSTSLAALAREFDRFGSIRTIDYVKGDSFAYIQYESLDAAQ 140
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 141 AACAQMRGFPLGGPERRLRVDFAKA 165
Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL HN+ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 9 TRNLFIGNLDHNVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 68
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 69 AMSGRVVGRNPIKIGYGKA 87
>MGI|MGI:1923598 [details] [associations]
symbol:Rbm15b "RNA binding motif protein 15B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923598 GO:GO:0005654 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
eggNOG:NOG250829 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912 CTD:29890
HOGENOM:HOG000006547 HOVERGEN:HBG058366 KO:K13190 OMA:KRDSERN
OrthoDB:EOG42RD6Z EMBL:AC147636 EMBL:BC052180 EMBL:AK075777
IPI:IPI00278942 RefSeq:NP_780611.3 UniGene:Mm.431589
UniGene:Mm.440089 PDB:1WHY PDBsum:1WHY ProteinModelPortal:Q6PHZ5
SMR:Q6PHZ5 PhosphoSite:Q6PHZ5 PaxDb:Q6PHZ5 PRIDE:Q6PHZ5
Ensembl:ENSMUST00000055843 GeneID:109095 KEGG:mmu:109095
UCSC:uc012gzz.1 GeneTree:ENSGT00530000063730 InParanoid:Q6PHZ5
EvolutionaryTrace:Q6PHZ5 NextBio:361644 Bgee:Q6PHZ5
CleanEx:MM_RBM15B Genevestigator:Q6PHZ5
GermOnline:ENSMUSG00000045365 Uniprot:Q6PHZ5
Length = 887
Score = 147 (56.8 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 406 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 463
Query: 83 ASMKALQGFPLAG--NPLRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 464 AACAKMRGFPLGGPDRRLRVDFAKA 488
Score = 115 (45.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 332 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 391
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 392 AMSGRVIGRNPIKIGYGKA 410
Score = 30 (15.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 20 HSGGGGRANTPP 31
H GGR++ P
Sbjct: 77 HRASGGRSSGAP 88
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 23 GGGRA---NTP-----PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFIN 74
GGGR N P P+++LW+GN++ N+ L F +FG ++++ GR AF+N
Sbjct: 258 GGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRILHGRGCAFVN 317
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
F E A A+ L G + G PL+I F K
Sbjct: 318 FFTVESAAAARNGLNGTMVCGMPLKINFRK 347
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 20 HSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEE 79
+ G GG+ P++ +W GN++ E + F +FG L+++ P + AFI F
Sbjct: 166 NKGAGGQLE--PTKIVWAGNINPESTEEEVRHLFSQFGYLQAIKIIPNKQCAFITFADVN 223
Query: 80 DAIASMKALQGFPLAGNPLRIEFAK 104
AI + L G G PL++ F K
Sbjct: 224 CAIQAQFNLNGTIFRGLPLKLGFGK 248
>FB|FBgn0027548 [details] [associations]
symbol:nito "spenito" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0048749 "compound eye
development" evidence=IMP] [GO:0030177 "positive regulation of Wnt
receptor signaling pathway" evidence=IGI] [GO:0035222 "wing disc
pattern formation" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 HSSP:P19339 GO:GO:0071011 GO:GO:0000398
InterPro:IPR012921 Pfam:PF07744 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 KO:K13190 GeneTree:ENSGT00530000063730
EMBL:AF145664 RefSeq:NP_610339.1 RefSeq:NP_724633.1 UniGene:Dm.2130
SMR:Q7KMJ6 IntAct:Q7KMJ6 STRING:Q7KMJ6 EnsemblMetazoa:FBtr0088857
EnsemblMetazoa:FBtr0088858 GeneID:35756 KEGG:dme:Dmel_CG2910
UCSC:CG2910-RA CTD:35756 FlyBase:FBgn0027548 InParanoid:Q7KMJ6
OMA:CKVELSG OrthoDB:EOG4W3R31 GenomeRNAi:35756 NextBio:795063
Uniprot:Q7KMJ6
Length = 793
Score = 140 (54.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G P+ +W+G L L +F RFG ++ + +Q G YA+I ++ E A A+
Sbjct: 387 GYGKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATAA 446
Query: 85 MKALQGFPLAG--NPLRIEFAK 104
+K ++GFPL G LR +FA+
Sbjct: 447 VKEMRGFPLGGPERRLRTDFAE 468
>UNIPROTKB|F1NRZ4 [details] [associations]
symbol:LOC100859595 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007221
"positive regulation of transcription of Notch receptor target"
evidence=IEA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0060674 "placenta blood vessel development"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 InterPro:IPR012921
Pfam:PF07744 GO:GO:0045638 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:AADN02044860 IPI:IPI00578434 Ensembl:ENSGALT00000000546
Uniprot:F1NRZ4
Length = 957
Score = 132 (51.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 440 GYGKA-TPTTR-LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAQ 497
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 498 AACTHMRGFPLGGPDRRLRVDFA 520
Score = 100 (40.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R L++GNL + E +L F RFG + V + PGR +Y F+ F+ + A +
Sbjct: 366 NRTLFLGNLDITVSETDLRRAFDRFGVITEVDIKRPGRGQTSTYGFLKFENLDMAHRAKL 425
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G L NP++I + KA
Sbjct: 426 AMSGKVLLRNPIKIGYGKA 444
Score = 33 (16.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 21 SGGGGRAN 28
SGGGG +N
Sbjct: 44 SGGGGGSN 51
>UNIPROTKB|J9PBG8 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 KO:K13190
GeneTree:ENSGT00530000063730 CTD:64783 EMBL:AAEX03004718
RefSeq:XP_537035.1 ProteinModelPortal:J9PBG8
Ensembl:ENSCAFT00000043159 GeneID:479909 KEGG:cfa:479909
Uniprot:J9PBG8
Length = 969
Score = 132 (51.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 446 GYGKA-TPTTR-LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAH 503
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 504 AAWTHMRGFPLGGPDRRLRVDFA 526
Score = 31 (16.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 19 THSGGGGR 26
T SGGG R
Sbjct: 88 TDSGGGSR 95
>UNIPROTKB|F1S620 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:CU915404 Ensembl:ENSSSCT00000007457 Uniprot:F1S620
Length = 971
Score = 132 (51.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 448 GYGKA-TPTTR-LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAH 505
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 506 AAWTHMRGFPLGGPDRRLRVDFA 528
Score = 31 (16.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 19 THSGGGGR 26
T SGGG R
Sbjct: 88 TDSGGGSR 95
>UNIPROTKB|E2R9C6 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:AAEX03004718 ProteinModelPortal:E2R9C6
Ensembl:ENSCAFT00000031467 Uniprot:E2R9C6
Length = 977
Score = 132 (51.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 446 GYGKA-TPTTR-LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAH 503
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 504 AAWTHMRGFPLGGPDRRLRVDFA 526
Score = 31 (16.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 19 THSGGGGR 26
T SGGG R
Sbjct: 88 TDSGGGSR 95
>UNIPROTKB|Q96T37 [details] [associations]
symbol:RBM15 "Putative RNA-binding protein 15" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0001569 "patterning of blood
vessels" evidence=IEA] [GO:0007221 "positive regulation of
transcription of Notch receptor target" evidence=IEA] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0060412
"ventricular septum morphogenesis" evidence=IEA] [GO:0060674
"placenta blood vessel development" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0019048 GO:GO:0000166
EMBL:CH471122 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 EMBL:AF364035 EMBL:AJ303089 EMBL:AJ303090
EMBL:AL355488 GO:GO:0007221 HOVERGEN:HBG058366 KO:K13190
EMBL:AF368062 EMBL:AF368063 EMBL:AF368064 EMBL:AJ297259
EMBL:AK022541 EMBL:AK025596 EMBL:BC006397 EMBL:BC062316
EMBL:BC098140 EMBL:BC103507 IPI:IPI00102752 IPI:IPI00220716
IPI:IPI00220717 RefSeq:NP_001188474.1 RefSeq:NP_073605.4
UniGene:Hs.435947 UniGene:Hs.708172 ProteinModelPortal:Q96T37
SMR:Q96T37 IntAct:Q96T37 STRING:Q96T37 PhosphoSite:Q96T37
DMDM:32363506 PaxDb:Q96T37 PRIDE:Q96T37 DNASU:64783
Ensembl:ENST00000369784 GeneID:64783 KEGG:hsa:64783 UCSC:uc001dzl.1
UCSC:uc001dzm.1 UCSC:uc021orn.1 CTD:64783 GeneCards:GC01P110876
HGNC:HGNC:14959 HPA:CAB015201 HPA:HPA019824 MIM:606077
neXtProt:NX_Q96T37 PharmGKB:PA34264 InParanoid:Q96T37 OMA:DYLVMIV
OrthoDB:EOG41ZF99 PhylomeDB:Q96T37 ChiTaRS:RBM15 GenomeRNAi:64783
NextBio:66822 Bgee:Q96T37 Genevestigator:Q96T37 Uniprot:Q96T37
Length = 977
Score = 132 (51.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 447 GYGKA-TPTTR-LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAH 504
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 505 AAWTHMRGFPLGGPDRRLRVDFA 527
Score = 31 (16.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 19 THSGGGGR 26
T SGGG R
Sbjct: 88 TDSGGGSR 95
>UNIPROTKB|F1S619 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:CU915404 Ensembl:ENSSSCT00000007458 Uniprot:F1S619
Length = 979
Score = 132 (51.5 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 448 GYGKA-TPTTR-LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAH 505
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 506 AAWTHMRGFPLGGPDRRLRVDFA 528
Score = 31 (16.0 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 19 THSGGGGR 26
T SGGG R
Sbjct: 88 TDSGGGSR 95
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 120 (47.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP---GRS--YAFINFKIEE 79
G ++ P L+VGN+ +I+E +L F FGELE V Q GRS Y F+ F+
Sbjct: 265 GNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPN 324
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ + G+ L G +R+
Sbjct: 325 QAREALEKMNGYDLGGRAIRV 345
Score = 32 (16.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 23 GGGRANT 29
GGGRA T
Sbjct: 113 GGGRART 119
>ZFIN|ZDB-GENE-070928-29 [details] [associations]
symbol:alyref "Aly/REF export factor" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070928-29 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:CU693479
IPI:IPI00868115 Ensembl:ENSDART00000108647 ArrayExpress:F1Q9D1
Bgee:F1Q9D1 Uniprot:F1Q9D1
Length = 280
Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 22 GGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINFK 76
GGGG A L V NL + +A++ + F FG L+ A + GRS A ++F+
Sbjct: 114 GGGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFE 173
Query: 77 IEEDAIASMKALQGFPLAGNPLRIE 101
+ DA+ +MK G PL G P+ I+
Sbjct: 174 RKADALKAMKQYNGVPLDGRPMNIQ 198
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIASMKALQGFP 92
++VGNL+ +++ +L +F ++G+L SV AF P +AF+ F+ +DA + L G
Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPP-GFAFVEFEHRDDAEKACDILNGSE 67
Query: 93 LAGNPLRIEFAK 104
L G+ LR+E +K
Sbjct: 68 LLGSQLRVEISK 79
>UNIPROTKB|E1BFX6 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:DAAA02007553 IPI:IPI00700723 Ensembl:ENSBTAT00000052066
Uniprot:E1BFX6
Length = 914
Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 404 GYGKA-TPTTR-LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAH 461
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 462 AAWTHMRGFPLGGPDRRLRVDFA 484
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 124 (48.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 19 THSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV---AFQP-GR--SYAF 72
T SGG +N PPSR L+VGNLS + E L + F GE+ + FQ G+ +AF
Sbjct: 202 TQSGGINSSN-PPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAF 260
Query: 73 INFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
I+FK EE A ++K+ L LR+E+ +
Sbjct: 261 IDFKDEEGATTALKSKLTKMLINRKLRMEYGE 292
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 124 (48.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 19 THSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV---AFQP-GR--SYAF 72
T SGG +N PPSR L+VGNLS + E L + F GE+ + FQ G+ +AF
Sbjct: 202 TQSGGINSSN-PPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAF 260
Query: 73 INFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
I+FK EE A ++K+ L LR+E+ +
Sbjct: 261 IDFKDEEGATTALKSKLTKMLINRKLRMEYGE 292
>MGI|MGI:1341044 [details] [associations]
symbol:Alyref "Aly/REF export factor" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1341044 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH466558
GO:GO:0003697 GO:GO:0051028 EMBL:AL663030 InterPro:IPR025715
Pfam:PF13865 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 OrthoDB:EOG4MW87F CTD:10189
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:U89876 EMBL:AJ252140
EMBL:BC120588 EMBL:BC137658 EMBL:AK035721 IPI:IPI00114407
IPI:IPI00122339 RefSeq:NP_035698.1 UniGene:Mm.1886 PDB:1NO8
PDBsum:1NO8 ProteinModelPortal:O08583 SMR:O08583 DIP:DIP-59977N
STRING:O08583 PhosphoSite:O08583 PaxDb:O08583 PRIDE:O08583
Ensembl:ENSMUST00000026125 GeneID:21681 KEGG:mmu:21681
UCSC:uc007mtl.1 InParanoid:Q0VBL5 EvolutionaryTrace:O08583
NextBio:300988 Bgee:O08583 CleanEx:MM_THOC4 Genevestigator:O08583
GermOnline:ENSMUSG00000025134 Uniprot:O08583
Length = 255
Score = 120 (47.3 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG GG A L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 93 SGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 152
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIE 101
+ + DA+ +MK G PL G P+ I+
Sbjct: 153 ERKADALKAMKQYNGVPLDGRPMNIQ 178
>UNIPROTKB|Q3T0I4 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0046784 "intronless viral mRNA
export from host nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 InterPro:IPR025715 Pfam:PF13865
GO:GO:0000346 GO:GO:0046784 KO:K12881 HSSP:Q9NQ94 eggNOG:NOG316507
HOGENOM:HOG000239962 OrthoDB:EOG4MW87F EMBL:BC102384
IPI:IPI00710588 RefSeq:NP_001030494.1 UniGene:Bt.48992
ProteinModelPortal:Q3T0I4 SMR:Q3T0I4 STRING:Q3T0I4 PRIDE:Q3T0I4
Ensembl:ENSBTAT00000011202 GeneID:537706 KEGG:bta:537706 CTD:10189
GeneTree:ENSGT00410000025615 InParanoid:Q3T0I4 OMA:IRNRPAI
NextBio:20877198 Uniprot:Q3T0I4
Length = 257
Score = 120 (47.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG GG A L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 94 SGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 153
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIE 101
+ + DA+ +MK G PL G P+ I+
Sbjct: 154 ERKADALKAMKQYNGVPLDGRPMNIQ 179
>UNIPROTKB|F1PL92 [details] [associations]
symbol:ALYREF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 GeneTree:ENSGT00410000025615 OMA:IRNRPAI
EMBL:AAEX03006169 Ensembl:ENSCAFT00000009466 Uniprot:F1PL92
Length = 257
Score = 120 (47.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG GG A L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 94 SGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 153
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIE 101
+ + DA+ +MK G PL G P+ I+
Sbjct: 154 ERKADALKAMKQYNGVPLDGRPMNIQ 179
>UNIPROTKB|Q86V81 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC145207 GO:GO:0000398
GO:GO:0071013 Reactome:REACT_1788 GO:GO:0006369 InterPro:IPR025715
Pfam:PF13865 GO:GO:0031124 Reactome:REACT_78 GO:GO:0000346
GO:GO:0046784 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 CTD:10189 EMBL:BC052302 EMBL:AF047002
IPI:IPI01010794 RefSeq:NP_005773.3 UniGene:Hs.534385 PDB:3ULH
PDBsum:3ULH ProteinModelPortal:Q86V81 SMR:Q86V81 DIP:DIP-32711N
IntAct:Q86V81 MINT:MINT-5001811 STRING:Q86V81 PhosphoSite:Q86V81
DMDM:48429165 PaxDb:Q86V81 PRIDE:Q86V81 DNASU:10189
Ensembl:ENST00000331204 GeneID:10189 KEGG:hsa:10189
GeneCards:GC17M079849 HGNC:HGNC:19071 HPA:CAB016281 HPA:HPA019799
MIM:604171 neXtProt:NX_Q86V81 PharmGKB:PA134925107
InParanoid:Q86V81 GenomeRNAi:10189 NextBio:38562 PMAP-CutDB:Q86V81
ArrayExpress:Q86V81 Bgee:Q86V81 CleanEx:HS_THOC4
Genevestigator:Q86V81 GermOnline:ENSG00000183684 Uniprot:Q86V81
Length = 257
Score = 120 (47.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG GG A L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 94 SGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 153
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIE 101
+ + DA+ +MK G PL G P+ I+
Sbjct: 154 ERKADALKAMKQYNGVPLDGRPMNIQ 179
>UNIPROTKB|E9PB61 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC145207 InterPro:IPR025715 Pfam:PF13865 KO:K12881 CTD:10189
OMA:IRNRPAI RefSeq:NP_005773.3 UniGene:Hs.534385 DNASU:10189
GeneID:10189 KEGG:hsa:10189 HGNC:HGNC:19071 GenomeRNAi:10189
NextBio:38562 IPI:IPI00328840 ProteinModelPortal:E9PB61 SMR:E9PB61
IntAct:E9PB61 PRIDE:E9PB61 Ensembl:ENST00000505490 UCSC:uc002kbu.2
ArrayExpress:E9PB61 Bgee:E9PB61 Uniprot:E9PB61
Length = 264
Score = 120 (47.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG GG A L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 101 SGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 160
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIE 101
+ + DA+ +MK G PL G P+ I+
Sbjct: 161 ERKADALKAMKQYNGVPLDGRPMNIQ 186
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 129 (50.5 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 22 GGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDA 81
G G + PSR LWVGN+ ++ E +L +F FGELESV + AF+NFK +A
Sbjct: 903 GDGEDEDHLPSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFVNFKDTNEA 962
Query: 82 IASMKALQGFPLAGNPLRIEF 102
I + K + L + + F
Sbjct: 963 INAKKGMHNQVLGSQYIVVNF 983
Score = 114 (45.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGF 91
SR +++GN+S N+ E + + ++GE+ES+ ++ AF+NF +A A+++ L G
Sbjct: 1010 SRAIYIGNVSDNLPEKEIRKECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTLNGK 1069
Query: 92 PLAGNPLRIEFAK 104
L +R+ + K
Sbjct: 1070 KLGDTIVRVNYGK 1082
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRS--YAFINFKIEE 79
+ N P R L+VG+L NI E L F FG+++++ GRS Y FI F E
Sbjct: 7 KGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 65
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+R+
Sbjct: 66 CARRALEQLNGFELAGRPMRV 86
>DICTYBASE|DDB_G0272108 [details] [associations]
symbol:DDB_G0272108 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0272108 GO:GO:0000166
Gene3D:3.30.70.330 GenomeReviews:CM000151_GR GO:GO:0003676
EMBL:AAFI02000008 RefSeq:XP_645138.2 ProteinModelPortal:Q55A46
EnsemblProtists:DDB0220129 GeneID:8618308 KEGG:ddi:DDB_G0272108
InParanoid:Q55A46 Uniprot:Q55A46
Length = 469
Score = 123 (48.4 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 20 HSGGG--GRANTPP--SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINF 75
+S GG R +P S ++VG+L+ +E L + F FGE+ S+ P R +AF+N+
Sbjct: 230 NSNGGFQPREYSPKNNSNAIFVGDLTPIAQEQTLNNIFKEFGEITSIRLFPSRGFAFVNY 289
Query: 76 KIEEDAIASMKALQGFPLAGNPLRI 100
K E + ++ + G + GNP+++
Sbjct: 290 KDSESCVRAIAGMNGGLVDGNPVKV 314
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 115 (45.5 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRS--YAFINFKIEE 79
+ N P R L+VG+L NI E L F FG+++++ GRS Y FI F E
Sbjct: 32 KGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 90
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+R+
Sbjct: 91 CARRALEQLNGFELAGRPMRV 111
>ZFIN|ZDB-GENE-041008-192 [details] [associations]
symbol:rbm15 "RNA binding motif protein 15"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041008-192 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
OMA:DYLVMIV EMBL:BX324132 IPI:IPI00902274
Ensembl:ENSDART00000111617 Bgee:F1RCY7 Uniprot:F1RCY7
Length = 855
Score = 125 (49.1 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A TP +R LWVG L + L +F RFG + ++ ++ G ++A+I ++ + A
Sbjct: 382 GYGKA-TPTTR-LWVGGLGPWVPLTALAREFDRFGTIRTIDYRKGDTWAYIQYESLDAAQ 439
Query: 83 ASMKALQGFPLAG--NPLRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 440 AACTHMRGFPLGGPDRRLRVDFA 462
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGEL--ESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L++G LS + NL D F ++G + V GR YAF+ +K DA ++KAL G
Sbjct: 3 LYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTT 62
Query: 93 LAGNPLRIEFAK 104
L + + +E+AK
Sbjct: 63 LLNSKISVEWAK 74
>MGI|MGI:1913144 [details] [associations]
symbol:Alyref2 "Aly/REF export factor 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1913144 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 InterPro:IPR025715
Pfam:PF13865 KO:K12881 EMBL:AJ252141 EMBL:AK048243 IPI:IPI00311103
IPI:IPI00377350 RefSeq:NP_062357.3 UniGene:Mm.389208 PDB:2F3J
PDB:2KT5 PDB:2YKA PDBsum:2F3J PDBsum:2KT5 PDBsum:2YKA
ProteinModelPortal:Q9JJW6 SMR:Q9JJW6 IntAct:Q9JJW6 STRING:Q9JJW6
PhosphoSite:Q9JJW6 PaxDb:Q9JJW6 PRIDE:Q9JJW6 GeneID:56009
KEGG:mmu:56009 CTD:56009 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 InParanoid:Q9JJW6 OrthoDB:EOG4MW87F
EvolutionaryTrace:Q9JJW6 NextBio:311734 CleanEx:MM_REFBP2
Genevestigator:Q9JJW6 GermOnline:ENSMUSG00000060244 Uniprot:Q9JJW6
Length = 218
Score = 114 (45.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG GG L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 63 SGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF 122
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIE 101
+ DA+ +MK +G PL G P+ I+
Sbjct: 123 ERRADALKAMKQYKGVPLDGRPMDIQ 148
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 115 (45.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRS--YAFINFKIEE 79
+ N P R L+VG+L NI E L F FG+++++ GRS Y FI F E
Sbjct: 87 KGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 145
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+R+
Sbjct: 146 CARRALEQLNGFELAGRPMRV 166
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 122 (48.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 20 HSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEE 79
H G + P + ++VG LS ++ E L F FG ++ V PG++ F+ + E
Sbjct: 508 HLQQGQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNRE 567
Query: 80 DAIASMKALQGFPLAGNPLRIEFAK 104
+A ++ A+QGF + GN +R+ + +
Sbjct: 568 EAEEAIAAMQGFVIGGNRVRLSWGR 592
>UNIPROTKB|E1C2L5 [details] [associations]
symbol:THOC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 GO:GO:0071013
InterPro:IPR025715 Pfam:PF13865 GO:GO:0000346
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:AADN02053597
IPI:IPI00576073 ProteinModelPortal:E1C2L5
Ensembl:ENSGALT00000011710 Uniprot:E1C2L5
Length = 258
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG G A L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 92 SGFGAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 151
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIE 101
+ + DA+ +MK G PL G P+ I+
Sbjct: 152 ERKADALKAMKQYNGVPLDGRPMNIQ 177
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 113 (44.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR--SYAFINFKIEEDAIASMKALQGFP 92
++VGNL ++ E + D F ++G ++ V + GR ++AF+ F+ DA +++A G+
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 93 LAGNPLRIEFAK 104
G +R+EF +
Sbjct: 71 FDGRRIRVEFTR 82
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 113 (44.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR--SYAFINFKIEEDAIASMKALQGFP 92
++VGNL ++ E + D F ++G ++ V + GR ++AF+ F+ DA +++A G+
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 93 LAGNPLRIEFAK 104
G +R+EF +
Sbjct: 71 FDGRRIRVEFTR 82
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 111 (44.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEE 79
A+ P+ ++V NL+ +++ L F +FGE+ + ++F+ R A I FK
Sbjct: 2 ADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVS 61
Query: 80 DAIASMKALQGFPLAGNPLRIEFAK 104
A +++ALQGFP G P+RI++A+
Sbjct: 62 SASNALRALQGFPFYGKPMRIQYAR 86
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 111 (44.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEE 79
A+ P+ ++V NL+ +++ L F +FGE+ + ++F+ R A I FK
Sbjct: 2 ADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVS 61
Query: 80 DAIASMKALQGFPLAGNPLRIEFAK 104
A +++ALQGFP G P+RI++A+
Sbjct: 62 SASNALRALQGFPFYGKPMRIQYAR 86
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVA----FQPGRS--YAFINFKIEEDAIASMKAL 88
++VGNL +++ E +L F RFG +ESV F+ GRS YAF+ + + A+ ++ A
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104
Query: 89 QGFPLAGNPLRIEFAKA 105
G L G L + AK+
Sbjct: 105 HGKDLQGRSLVVRIAKS 121
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVA----FQPGRS--YAFINFKIEEDAIASMKAL 88
++VGNL +++ E +L F RFG +ESV F+ GRS YAF+ + + A+ ++ A
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104
Query: 89 QGFPLAGNPLRIEFAKA 105
G L G L + AK+
Sbjct: 105 HGKDLQGRSLVVRIAKS 121
>FB|FBgn0030571 [details] [associations]
symbol:CG14414 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:AE014298
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 FlyBase:FBgn0030571
UniGene:Dm.14675 GeneID:32394 KEGG:dme:Dmel_CG14414
GenomeRNAi:32394 NextBio:778237 RefSeq:NP_727783.3
ProteinModelPortal:Q9VY29 SMR:Q9VY29 UCSC:CG14414-RB
InParanoid:Q9VY29 PhylomeDB:Q9VY29 ArrayExpress:Q9VY29 Bgee:Q9VY29
Uniprot:Q9VY29
Length = 205
Score = 110 (43.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/92 (31%), Positives = 40/92 (43%)
Query: 22 GGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES--VAFQPG-------RSYAF 72
GGGG N +R +WVGNL I E L + G +E + F G R YAF
Sbjct: 16 GGGGGGNPEEARRIWVGNLDSRITEFQLLKLMQKCGAIEKFDMLFHKGGPMVGQSRGYAF 75
Query: 73 INFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
+ F E A ++ L G + + + AK
Sbjct: 76 VTFAQNEGATNALLKLDGTSVGNRSIAVRLAK 107
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 87 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 145
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 146 CAKKALEQLNGFELAGRPMKV 166
>UNIPROTKB|F5H0I5 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01013620 ProteinModelPortal:F5H0I5 SMR:F5H0I5
Ensembl:ENST00000545444 ArrayExpress:F5H0I5 Bgee:F5H0I5
Uniprot:F5H0I5
Length = 130
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>UNIPROTKB|F5H532 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01012415 ProteinModelPortal:F5H532 SMR:F5H532
Ensembl:ENST00000445919 ArrayExpress:F5H532 Bgee:F5H532
Uniprot:F5H532
Length = 101
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>UNIPROTKB|F5H8B8 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01015620 ProteinModelPortal:F5H8B8 SMR:F5H8B8
Ensembl:ENST00000536624 ArrayExpress:F5H8B8 Bgee:F5H8B8
Uniprot:F5H8B8
Length = 145
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV---AFQPG---RSYAFINFKIEED 80
+ PPSR L+VGNLS ++ + L F G++ + F+ + +AFI+FK EE
Sbjct: 233 SKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEG 292
Query: 81 AIASMKALQGFPLAGNPLRIEFAK 104
+ ++K +AG PLR+E+ +
Sbjct: 293 STNALKDKSCRKIAGRPLRMEYGE 316
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 115 (45.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>DICTYBASE|DDB_G0278349 [details] [associations]
symbol:tra2 "putative transformer-2 protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
OMA:GIHPRLT Uniprot:Q54Y98
Length = 326
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 21 SGGGGR-----ANTP-PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS- 69
+GG G ANT PS L V L+ EE +L D+F RFG+++ V + GRS
Sbjct: 95 NGGNGETRNRLANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSK 154
Query: 70 -YAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103
+ F+ F+ +EDA+ + + Q L G +R +F+
Sbjct: 155 CFGFVYFENKEDAVRAKEECQDLQLHGKSIRTDFS 189
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 115 (45.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRS--YAFINFKIEE 79
+ N P R L+VG+L NI E L F FG+++++ GRS Y FI F E
Sbjct: 257 KGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+R+
Sbjct: 316 CARRALEQLNGFELAGRPMRV 336
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 111 (44.1 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASM 85
+ PP+ L++ NL E L+ F +F + V PGR AF+ F E A A+
Sbjct: 201 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 260
Query: 86 KALQGFPLA-GNPLRIEFAK 104
+ALQGF + N ++I FAK
Sbjct: 261 EALQGFKITQSNAMKISFAK 280
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 115 (45.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 115 (45.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 115 (45.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 115 (45.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 115 (45.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 115 (45.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 115 (45.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 115 (45.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG +ES+ + GRS Y FI F E
Sbjct: 244 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 114 (45.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGEL--ESVAFQP-GRSYAF--INFKIEEDAIAS 84
P S ++VGNL + NL D F G + +A++P GRS F + F+ E DA +S
Sbjct: 307 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASS 366
Query: 85 MKALQGFPLAGNPLRIEFA 103
++ L G+ G PL++ +A
Sbjct: 367 IEKLNGYRYGGRPLQLSYA 385
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 113 (44.8 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRS--YAFINFKIEE 79
+ ++ P R L+VG+L NI E L F FG+++++ GRS Y FI F E
Sbjct: 258 KGSSGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 316
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+R+
Sbjct: 317 CARRALEQLNGFELAGRPMRV 337
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 110 (43.8 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGRS--YAFINFKIEEDAIASMKAL 88
SR ++VGNL +I E + D F ++G + + + P R Y F+ F+ DA ++K
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 89 QGFPLAGNPLRIEFA 103
G+ L G LR+E A
Sbjct: 66 DGYNLDGCRLRVELA 80
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 112 (44.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES--VAFQPG----RSYAFINFKIE 78
G + +PPS L++GNLS N NL + F +G + S V P + + ++ F
Sbjct: 262 GDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 79 EDAIASMKALQGFPLAGNPLRIEFA 103
++A A+++A+ G + G P R++F+
Sbjct: 322 DEAKAALEAMNGEYIEGRPCRLDFS 346
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 112 (44.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES--VAFQPG----RSYAFINFKIE 78
G + +PPS L++GNLS N NL + F +G + S V P + + ++ F
Sbjct: 262 GDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 79 EDAIASMKALQGFPLAGNPLRIEFA 103
++A A+++A+ G + G P R++F+
Sbjct: 322 DEAKAALEAMNGEYIEGRPCRLDFS 346
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 114 (45.2 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL+ + E L F +FG+LE V + + YAFI+F+ + A+ ++ L G L
Sbjct: 341 LFVRNLASTVTEELLEKTFCQFGKLERV--KKLKDYAFIHFEERDGAVKALAELHGKDLE 398
Query: 95 GNPLRIEFAK 104
G P+ I FAK
Sbjct: 399 GEPIEIVFAK 408
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 112 (44.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRS--YAFINFKIEEDAIAS 84
P R L+VG+L NI E L F FG+++++ GRS Y FI F E A +
Sbjct: 253 PMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 311
Query: 85 MKALQGFPLAGNPLRI 100
++ L GF LAG P+RI
Sbjct: 312 LEQLNGFELAGRPMRI 327
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 109 (43.4 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASM 85
+ PP+ L++ NL E L+ F +F + V PGR AF+ F E A A+
Sbjct: 201 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 260
Query: 86 KALQGFPLA-GNPLRIEFAK 104
ALQGF + N ++I FAK
Sbjct: 261 DALQGFKITQNNAMKISFAK 280
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQ----FLRFGELESVAFQPG---RSYAFINFKIEEDA 81
T P+ +++ NL+ I++ L F +FG++ + R AF+ FK A
Sbjct: 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSA 65
Query: 82 IASMKALQGFPLAGNPLRIEFAK 104
+++++QGFP P+RI++AK
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYAK 88
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 109 (43.4 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASM 85
+ PP+ L++ NL E L+ F +F + V PGR AF+ F E A A+
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 261
Query: 86 KALQGFPLA-GNPLRIEFAK 104
ALQGF + N ++I FAK
Sbjct: 262 DALQGFKITQNNAMKISFAK 281
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQ----FLRFGELESVAFQPG---RSYAFINFKIEEDA 81
T P+ +++ NL+ I++ L F +FG++ + R AF+ FK A
Sbjct: 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSA 65
Query: 82 IASMKALQGFPLAGNPLRIEFAK 104
+++++QGFP P+RI++AK
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYAK 88
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 109 (43.4 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASM 85
+ PP+ L++ NL E L+ F +F + V PGR AF+ F E A A+
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 261
Query: 86 KALQGFPLA-GNPLRIEFAK 104
ALQGF + N ++I FAK
Sbjct: 262 DALQGFKITQNNAMKISFAK 281
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQ----FLRFGELESVAFQPG---RSYAFINFKIEEDA 81
T P+ +++ NL+ I++ L F +FG++ + R AF+ FK A
Sbjct: 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSA 65
Query: 82 IASMKALQGFPLAGNPLRIEFAK 104
+++++QGFP P+RI++AK
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYAK 88
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 109 (43.4 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASM 85
+ PP+ L++ NL E L+ F +F + V PGR AF+ F E A A+
Sbjct: 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 261
Query: 86 KALQGFPLA-GNPLRIEFAK 104
ALQGF + N ++I FAK
Sbjct: 262 DALQGFKITQNNAMKISFAK 281
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQ----FLRFGELESVAFQPG---RSYAFINFKIEEDA 81
T P+ +++ NL+ I++ L F +FG++ + R AF+ FK A
Sbjct: 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSA 65
Query: 82 IASMKALQGFPLAGNPLRIEFAK 104
+++++QGFP P+RI++AK
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYAK 88
>ASPGD|ASPL0000053720 [details] [associations]
symbol:AN0109 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0000398 EMBL:AACD01000004 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519 OMA:ATNAMRT
OrthoDB:EOG4TB7MX RefSeq:XP_657713.1 ProteinModelPortal:Q5BH71
STRING:Q5BH71 EnsemblFungi:CADANIAT00002640 GeneID:2875883
KEGG:ani:AN0109.2 Uniprot:Q5BH71
Length = 252
Score = 108 (43.1 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-YAFINFKIEEDAIASMKAL 88
PP++ L++ L ++ +LT F RF V PGR AF+ ++ E AI++ +A
Sbjct: 174 PPNKILFLRELPDTADQGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEAT 233
Query: 89 QGFPLA--GNPLRIEFAK 104
G P+ G P+R+ + +
Sbjct: 234 SGMPMGPEGKPIRVTYQR 251
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 109 (43.4 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASM 85
+ PP+ L++ NL E L+ F +F + V PGR AF+ F E A A+
Sbjct: 205 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 264
Query: 86 KALQGFPLA-GNPLRIEFAK 104
ALQGF + N ++I FAK
Sbjct: 265 DALQGFKITQNNAMKISFAK 284
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQ----FLRFGELESVAFQPG---RSYAFINFKIEEDA 81
T P+ +++ NL+ I++ L F +FG++ + R AF+ FK A
Sbjct: 10 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSA 69
Query: 82 IASMKALQGFPLAGNPLRIEFAK 104
+++++QGFP P+RI++AK
Sbjct: 70 TNALRSMQGFPFYDKPMRIQYAK 92
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 109 (43.4 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASM 85
+ PP+ L++ NL E L+ F +F + V PGR AF+ F E A A+
Sbjct: 207 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 266
Query: 86 KALQGFPLA-GNPLRIEFAK 104
ALQGF + N ++I FAK
Sbjct: 267 DALQGFKITQNNAMKISFAK 286
Score = 94 (38.1 bits), Expect = 0.00038, P = 0.00038
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQ----FLRFGELESVA---FQPGRSYAFINFKIEEDA 81
T + +++ NL+ I++ L F +FG++ + R AF+ FK A
Sbjct: 12 TRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSA 71
Query: 82 IASMKALQGFPLAGNPLRIEFAK 104
+++++QGFP P+RI++AK
Sbjct: 72 TNALRSMQGFPFYDKPMRIQYAK 94
>UNIPROTKB|F1MB97 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063730 EMBL:DAAA02043252 IPI:IPI01003198
Ensembl:ENSBTAT00000055533 Uniprot:F1MB97
Length = 636
Score = 114 (45.2 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 27 ANTPPS-----RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-----AFINF 75
A+TPPS RHLWVGNL N+ E + + F R+G +ESV P R AF++F
Sbjct: 76 ASTPPSMVRETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDF 134
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 113 (44.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
R P R L+VG+L NI E L F FG++E + + GRS Y FI+F E
Sbjct: 258 RGGAGPMR-LYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAE 316
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 317 CAKKALEQLNGFELAGRPMKV 337
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 99 (39.9 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 20/76 (26%), Positives = 39/76 (51%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ 89
P + ++VG LS + E L F FG++ V PG+ F+ F A ++ +Q
Sbjct: 281 PNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQMQ 340
Query: 90 GFPLAGNPLRIEFAKA 105
G+P+ + +R+ + ++
Sbjct: 341 GYPIGNSRVRLSWGRS 356
Score = 32 (16.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 23 GGGRAN-TPPSRHL-W 36
G G N TPP++++ W
Sbjct: 234 GAGPMNMTPPAQNMQW 249
>UNIPROTKB|F5H540 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI00941146 ProteinModelPortal:F5H540 SMR:F5H540
Ensembl:ENST00000421075 UCSC:uc004arx.3 ArrayExpress:F5H540
Bgee:F5H540 Uniprot:F5H540
Length = 258
Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 19 THSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAF 72
+H+ G RAN P+ L V LS E +L + F R+G L V + GRS +AF
Sbjct: 121 SHNQGDARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAF 180
Query: 73 INFKIEEDAIASMKALQGFPLAGNPLRIEFA 103
+ F+ +DA +M+ G L G +R++++
Sbjct: 181 VYFEHIDDAKEAMERANGMELDGRRIRVDYS 211
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 28 NTPPSRH-LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMK 86
NT P+ ++VG L E L F FG + +V G++ F+ F+ DA AS++
Sbjct: 354 NTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQ 413
Query: 87 ALQGFPLAGNPLRIEFAK 104
LQGF + G+P+R+ + +
Sbjct: 414 GLQGFIVGGSPIRLSWGR 431
>WB|WBGene00004705 [details] [associations]
symbol:rsp-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
NextBio:893300 Uniprot:Q9XTZ2
Length = 309
Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 35/96 (36%), Positives = 47/96 (48%)
Query: 22 GGGGRA--------NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES---VAFQPG--- 67
GGGGR N PS+ L V NLS E +L D F FGE+ V +P
Sbjct: 57 GGGGRGRNQQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNS 116
Query: 68 RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103
R + FI F + EDA A+ L L G+ +R++F+
Sbjct: 117 RGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 102 (41.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESV------AFQPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ + E+ L F+ FG+++ V A Q RS+ F+ F EDA A+M +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 89 QGFPLAGNPLRIEFA 103
G L G L + +A
Sbjct: 75 DGAELYGRVLTVNYA 89
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+ + P R L+VG+L NI E L F FG ++S+ + GRS Y FI F E
Sbjct: 240 KGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAE 298
Query: 80 DAIASMKALQGFPLAGNPLRI 100
A +++ L GF LAG P+++
Sbjct: 299 CAKKALEQLNGFELAGRPMKV 319
>GENEDB_PFALCIPARUM|MAL13P1.35 [details] [associations]
symbol:MAL13P1.35 "u1 small nuclear
ribonucleoprotein a, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG 90
P + L+V N+ N++ D F + P R+ AF++F E A +MKA+Q
Sbjct: 375 PYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQRNVAFVDFTDETTATFAMKAVQN 434
Query: 91 FPLAGNPLRIEFAK 104
+ L G+ L+I +AK
Sbjct: 435 YELQGSKLKISYAK 448
>UNIPROTKB|C0H5A4 [details] [associations]
symbol:MAL13P1.35 "U1 small nuclear ribonucleoprotein a,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG 90
P + L+V N+ N++ D F + P R+ AF++F E A +MKA+Q
Sbjct: 375 PYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQRNVAFVDFTDETTATFAMKAVQN 434
Query: 91 FPLAGNPLRIEFAK 104
+ L G+ L+I +AK
Sbjct: 435 YELQGSKLKISYAK 448
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQF 84
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQF 84
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>MGI|MGI:1891706 [details] [associations]
symbol:Spen "SPEN homolog, transcriptional regulator
(Drosophila)" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=ISO] [GO:0001191 "RNA polymerase II transcription factor
binding transcription factor activity involved in negative
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007219 "Notch signaling pathway" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0050769 "positive
regulation of neurogenesis" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1891706 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219
GO:GO:0003700 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
eggNOG:NOG12793 InterPro:IPR012921 Pfam:PF07744 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939 CTD:23013
HOGENOM:HOG000231295 HOVERGEN:HBG045583 OrthoDB:EOG4JM7NS
ChiTaRS:SPEN InterPro:IPR010912 EMBL:BY726481 EMBL:AF156529
EMBL:AB055980 EMBL:Z78160 EMBL:AK122402 IPI:IPI00378158
IPI:IPI00378159 IPI:IPI00605780 RefSeq:NP_062737.2
UniGene:Mm.299906 ProteinModelPortal:Q62504 SMR:Q62504
STRING:Q62504 PhosphoSite:Q62504 PaxDb:Q62504 PRIDE:Q62504
GeneID:56381 KEGG:mmu:56381 NextBio:312464 Genevestigator:Q62504
GermOnline:ENSMUSG00000040761 Uniprot:Q62504
Length = 3644
Score = 120 (47.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + EDA A+
Sbjct: 510 GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYSEIEDAQAA 569
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 570 VKETKGRKIGGNKIKVDFA 588
Score = 104 (41.7 bits), Expect = 0.00074, P = 0.00074
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-----AFINF 75
+RHLWVGNL N+ E + + F R+G +ESV P R AF++F
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDF 53
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 104 (41.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLT---DQFLRFGELESVAFQPGRSYAFINFKIEEDA 81
G+ PP+ L++ NL H L +Q+ F E+ + +PG AF+ ++ + A
Sbjct: 150 GQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG--IAFVEYEDDVQA 207
Query: 82 IASMKALQGFPLAG-NPLRIEFAK 104
+M+ LQGF + NP+ I FAK
Sbjct: 208 SIAMQPLQGFKITPQNPMVISFAK 231
Score = 96 (38.9 bits), Expect = 0.00015, P = 0.00015
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQ----FLRFGE-LESVAFQ-PG-RSYAFINFKIEE 79
A+ PP++ +++ NL+ I++ L F +FG L+ VA + P R A++ F
Sbjct: 4 ADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVT 63
Query: 80 DAIASMKALQGFPLAGNPLRIEFAKA 105
A +++ +Q FP P+R+++AKA
Sbjct: 64 AAGHAVRQMQNFPFYDKPMRLQYAKA 89
>UNIPROTKB|F1P7J0 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AAEX03009659 EMBL:AAEX03009658 Ensembl:ENSCAFT00000005784
Uniprot:F1P7J0
Length = 659
Score = 100 (40.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIA 83
G + T R L+VGNL +I E F ++GE V G+ + FI K+E A+A
Sbjct: 241 GEKTYTQRCR-LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFI--KLESRALA 297
Query: 84 SM-KA-LQGFPLAGNPLRIEFA 103
+ KA L P+ G LR+ FA
Sbjct: 298 EIAKAELDDTPMRGRQLRVRFA 319
Score = 33 (16.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 20 HSGGG----GRANTPP 31
H GGG GR + PP
Sbjct: 187 HRGGGEPRGGRQHHPP 202
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMK 86
A+T S ++VG LS + E L F FGE+ V PG+ F+ F + A ++
Sbjct: 298 ADTANST-VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAIN 356
Query: 87 ALQGFPLAGNPLRIEFAK 104
LQG+PL + +R+ + +
Sbjct: 357 QLQGYPLGNSRIRLSWGR 374
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 108 (43.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDA-IASMKALQGFPL 93
L+VGNL I E L DQF +FGE+ S+A P + AF+ + A +A+ + +
Sbjct: 234 LYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFNKLVI 293
Query: 94 AGNPLRIEFA 103
G + I++A
Sbjct: 294 QGRKVSIKWA 303
>ZFIN|ZDB-GENE-051120-15 [details] [associations]
symbol:zgc:123010 "zgc:123010" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR011990
InterPro:IPR012677 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF00076 PROSITE:PS50005 PROSITE:PS50102 PROSITE:PS50103
PROSITE:PS50293 SMART:SM00028 SMART:SM00360 ZFIN:ZDB-GENE-051120-15
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00510000049407 EMBL:CU462910 IPI:IPI00785732
Ensembl:ENSDART00000057073 ArrayExpress:F1QMD2 Bgee:F1QMD2
Uniprot:F1QMD2
Length = 501
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG 90
P LWVGN++ + E +L D F +GE++S+ R AF+NFK A +M+ L G
Sbjct: 367 PCNSLWVGNVTTELTEKHLRDLFKIYGEIDSIRVLHERFCAFVNFKNANMASRAMEKLNG 426
Query: 91 FPLAGNPLRIEF 102
+ L + +
Sbjct: 427 HFIENTRLVVRY 438
>RGD|1594679 [details] [associations]
symbol:Thoc4 "THO complex 4" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1594679
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473948
KO:K12881 GeneTree:ENSGT00410000025615 IPI:IPI00768839
RefSeq:NP_001103072.1 UniGene:Rn.6994 Ensembl:ENSRNOT00000054955
GeneID:690585 KEGG:rno:690585 CTD:690585 NextBio:741240
Uniprot:D3ZXH7
Length = 189
Score = 101 (40.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINF 75
SG GG A L V NL + +A++ + F FG L+ A + GRS A ++F
Sbjct: 94 SGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 153
Query: 76 KIEEDAIASMKALQGFPL 93
+ + DA+ +MK G PL
Sbjct: 154 ERKADALKAMKQYNGVPL 171
>WB|WBGene00004385 [details] [associations]
symbol:rnp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0042127
GO:GO:0007281 GO:GO:0000398 GO:GO:0040020 GO:GO:0017069
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 OMA:ATNAMRT EMBL:FO081596
PIR:T29387 RefSeq:NP_500504.1 ProteinModelPortal:Q21322 SMR:Q21322
STRING:Q21322 PaxDb:Q21322 EnsemblMetazoa:K08D10.4 GeneID:177181
KEGG:cel:CELE_K08D10.4 UCSC:K08D10.4 CTD:177181 WormBase:K08D10.4
InParanoid:Q21322 NextBio:895684 Uniprot:Q21322
Length = 206
Score = 102 (41.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 27 ANTPPSRHLWVGNLSHNIE----EANLTDQFLRFGELESV-AFQP--GRSYAFINFKIEE 79
A P+ L++ NL+ I+ +L F +FGE+ SV F+ R A + FK
Sbjct: 2 AEVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELP 61
Query: 80 DAIASMKALQGFPLAGNPLRIEFAK 104
A A+ +AL GFP P+RI+FA+
Sbjct: 62 AASAAREALNGFPFYEKPMRIQFAR 86
Score = 92 (37.4 bits), Expect = 0.00032, P = 0.00032
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEE 79
+GG G A PP++ L+ NL + L F +F L+ + P R AF+ F +
Sbjct: 122 NGGDGPA--PPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDS 179
Query: 80 DAIASMKALQGFPL-AGNPLRIEFAK 104
AI + L F + A + +R+++AK
Sbjct: 180 LAIPARTTLNNFKISAEHTMRVDYAK 205
>ZFIN|ZDB-GENE-040426-2452 [details] [associations]
symbol:sfpq "splicing factor proline/glutamine
rich (polypyrimidine tract binding protein associated)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007420 "brain development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2452 GO:GO:0007420 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075
HOVERGEN:HBG009801 EMBL:AY648751 IPI:IPI00507036 UniGene:Dr.32607
ProteinModelPortal:Q6DRK8 SMR:Q6DRK8 STRING:Q6DRK8 PRIDE:Q6DRK8
InParanoid:Q6DRK8 ArrayExpress:Q6DRK8 Bgee:Q6DRK8 Uniprot:Q6DRK8
Length = 638
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIA 83
G + T R L++GNL ++I E F ++GE + G+ + FI ++E A+A
Sbjct: 231 GEKTYTQRCR-LFIGNLPNDITEPEFRKLFAKYGEPSEIFINQGKGFGFI--RLESRALA 287
Query: 84 SM-KA-LQGFPLAGNPLRIEFA 103
+ KA L P+ G PLR+ FA
Sbjct: 288 EVAKAELDDTPMKGRPLRVRFA 309
>UNIPROTKB|E1BQ37 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016363 GO:GO:0000380 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 GeneTree:ENSGT00390000005004
KO:K13219 CTD:6421 OMA:APGGHPK EMBL:DAAA02009211 IPI:IPI00688960
RefSeq:NP_001193220.1 UniGene:Bt.59171 ProteinModelPortal:E1BQ37
Ensembl:ENSBTAT00000021719 GeneID:618226 KEGG:bta:618226
NextBio:20901069 Uniprot:E1BQ37
Length = 707
Score = 100 (40.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIA 83
G + T R L+VGNL +I E F ++GE V G+ + FI K+E A+A
Sbjct: 289 GEKTYTQRCR-LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFI--KLESRALA 345
Query: 84 SM-KA-LQGFPLAGNPLRIEFA 103
+ KA L P+ G LR+ FA
Sbjct: 346 EIAKAELDDTPMRGRQLRVRFA 367
Score = 33 (16.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 20 HSGGG----GRANTPP 31
H GGG GR + PP
Sbjct: 235 HRGGGEPRGGRQHHPP 250
>UNIPROTKB|P23246 [details] [associations]
symbol:SFPQ "Splicing factor, proline- and glutamine-rich"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0006397
"mRNA processing" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0042382 "paraspeckles"
evidence=IDA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 GO:GO:0003677 EMBL:CH471059 GO:GO:0006281
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0000122
GO:GO:0006310 GO:GO:0016363 GO:GO:0000380 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586 KO:K13219
HOGENOM:HOG000231095 HOVERGEN:HBG009801 EMBL:X70944 EMBL:AL590434
EMBL:X16850 IPI:IPI00010740 IPI:IPI00216613 PIR:A46302 PIR:S29770
RefSeq:NP_005057.1 UniGene:Hs.355934 UniGene:Hs.611911
ProteinModelPortal:P23246 SMR:P23246 IntAct:P23246
MINT:MINT-1141893 STRING:P23246 PhosphoSite:P23246 DMDM:1709851
SWISS-2DPAGE:P23246 PaxDb:P23246 PeptideAtlas:P23246 PRIDE:P23246
Ensembl:ENST00000357214 GeneID:6421 KEGG:hsa:6421 UCSC:uc001bys.3
CTD:6421 GeneCards:GC01M035641 HGNC:HGNC:10774 HPA:CAB009886
MIM:605199 neXtProt:NX_P23246 PharmGKB:PA35690 InParanoid:P23246
OMA:APGGHPK OrthoDB:EOG4RNB8S PhylomeDB:P23246 ChiTaRS:SFPQ
GenomeRNAi:6421 NextBio:24935 ArrayExpress:P23246 Bgee:P23246
CleanEx:HS_SFPQ Genevestigator:P23246 GermOnline:ENSG00000116560
Uniprot:P23246
Length = 707
Score = 100 (40.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIA 83
G + T R L+VGNL +I E F ++GE V G+ + FI K+E A+A
Sbjct: 289 GEKTYTQRCR-LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFI--KLESRALA 345
Query: 84 SM-KA-LQGFPLAGNPLRIEFA 103
+ KA L P+ G LR+ FA
Sbjct: 346 EIAKAELDDTPMRGRQLRVRFA 367
Score = 33 (16.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 20 HSGGG----GRANTPP 31
H GGG GR + PP
Sbjct: 235 HRGGGEPRGGRQHHPP 250
>UNIPROTKB|F5GWN9 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01013149 ProteinModelPortal:F5GWN9 SMR:F5GWN9
Ensembl:ENST00000433029 ArrayExpress:F5GWN9 Bgee:F5GWN9
Uniprot:F5GWN9
Length = 413
Score = 107 (42.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 104 (41.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR--SYAFINFKIEEDAIASMKAL 88
SR ++VGNL +I E + D F ++G + + + P R YAF+ F+ DA ++
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 89 QGFPLAGNPLRIEFA 103
G+ G+ LR+E A
Sbjct: 66 DGYDFDGHHLRVELA 80
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/75 (34%), Positives = 36/75 (48%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 103 (41.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 22 GGGGRAN-TPPSRHLWVGNLSHNI--EEA--NLTDQFLRFGE-LESVAFQP--GRSYAFI 73
GG N PP+ +++ NL+ I EE +L F +FG+ L+ +AF+ + A++
Sbjct: 11 GGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWV 70
Query: 74 NFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
F+ A ++K++Q FP P+RI++AK
Sbjct: 71 VFEDVASATEALKSMQDFPFHNKPMRIQYAK 101
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 103 (41.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 22 GGGGRAN-TPPSRHLWVGNLSHNI--EEA--NLTDQFLRFGE-LESVAFQP--GRSYAFI 73
GG N PP+ +++ NL+ I EE +L F +FG+ L+ +AF+ + A++
Sbjct: 11 GGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWV 70
Query: 74 NFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
F+ A ++K++Q FP P+RI++AK
Sbjct: 71 VFEDVASATEALKSMQDFPFHNKPMRIQYAK 101
>UNIPROTKB|F1NZU2 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:AADN02002396 IPI:IPI00570859
Ensembl:ENSGALT00000025521 ArrayExpress:F1NZU2 Uniprot:F1NZU2
Length = 447
Score = 107 (42.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 225 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 282
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 283 GENIEIVFAK 292
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 108 (43.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 307
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 308 GENIEIVFAK 317
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 108 (43.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 307
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 308 GENIEIVFAK 317
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 103 (41.3 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS--YAFINFKIEEDAIASMKALQGFP 92
++VGNL +I ++ D F +FG++ V + R +AF+ F+ DA ++KA G+
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 93 LAGNPLRIEFAK 104
G LR+EF +
Sbjct: 69 YDGYRLRVEFPR 80
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 108 (43.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERV--KKIRDYAFVHFNKREDAVHAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 22 GGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDA 81
G N P + ++VG L N+ + L F +FGEL V PG+ F+ + + A
Sbjct: 249 GANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASA 308
Query: 82 IASMKALQGFPLAGNPLRIEFAKA 105
++ L G L G +R+ + ++
Sbjct: 309 EHALSVLNGTQLGGQSIRLSWGRS 332
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL+ ++ E L +QF ++G++E V + + YAFI+F+ + A+ +M+ L G +
Sbjct: 342 LYVRNLTQDVSEDKLKEQFEQYGKVERV--KKIKDYAFIHFEDRDSAVEAMRGLNGKEIG 399
Query: 95 GNPLRIEFAK 104
+ + + AK
Sbjct: 400 ASNIEVSLAK 409
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 101 (40.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQF 84
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 398 GENIEIVFAK 407
>UNIPROTKB|F1Q262 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063730 EMBL:AAEX03001862 EMBL:AAEX03001863
Ensembl:ENSCAFT00000025602 Uniprot:F1Q262
Length = 3297
Score = 111 (44.1 bits), Expect = 0.00012, P = 0.00012
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + E A A+
Sbjct: 566 GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAA 625
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 626 VKETKGRKIGGNKIKVDFA 644
Score = 108 (43.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 27 ANTPPS-----RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-----AFINF 75
A PPS RHLWVGNL N+ E + + F R+G +ESV P R AF++F
Sbjct: 52 AGAPPSMVRETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDF 110
Score = 37 (18.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 77 IEEDAIASMKALQGFPLAGNPLRIE 101
IEE A AL P+ P +E
Sbjct: 2482 IEEKTPARASALPDLPVPSQPAPVE 2506
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 106 (42.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 33/85 (38%), Positives = 45/85 (52%)
Query: 22 GGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINF 75
G GG P R L+VG+L NI E L FG+++++ + GRS Y FI F
Sbjct: 273 GSGG-----PVR-LYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITF 326
Query: 76 KIEEDAIASMKALQGFPLAGNPLRI 100
E A +++ L GF LAG P+RI
Sbjct: 327 SDSECARRALEQLNGFELAGRPMRI 351
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 107 (42.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 398 GENIEIVFAK 407
>UNIPROTKB|G4MSP6 [details] [associations]
symbol:MGG_07085 "Small nuclear ribonucleoprotein U1a"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398
EMBL:CM001232 GO:GO:0017069 PANTHER:PTHR10501 RefSeq:XP_003715274.1
ProteinModelPortal:G4MSP6 EnsemblFungi:MGG_07085T0 GeneID:2682970
KEGG:mgr:MGG_07085 Uniprot:G4MSP6
Length = 234
Score = 101 (40.6 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP++ L+V +L + + LT F RF V PGR AF+ + E AIA+ +
Sbjct: 156 PPNKILFVQHLPEDFDVEKLTTVFGRFDGFREVRLVPGRRGIAFVEYDGEAGAIAAKENT 215
Query: 89 QGFPLA--GNPLRIEFAK 104
G PL G P+++ + +
Sbjct: 216 AGMPLGAEGKPVKVTYQR 233
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 98 (39.6 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 9 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 68
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 69 IDDSKEAMERANGMELDGRRIRVDYS 94
>FB|FBgn0010774 [details] [associations]
symbol:Ref1 "RNA and export factor binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0031965 "nuclear membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005654 GO:GO:0000166
GO:GO:0031965 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HSSP:O08583 eggNOG:NOG316507
GeneTree:ENSGT00410000025615 OMA:IRNRPAI ChiTaRS:ALYREF
EMBL:AF172637 RefSeq:NP_651968.1 UniGene:Dm.3104 SMR:Q9V3E7
IntAct:Q9V3E7 MINT:MINT-318070 STRING:Q9V3E7
EnsemblMetazoa:FBtr0081642 GeneID:44029 KEGG:dme:Dmel_CG1101
UCSC:CG1101-RA CTD:44029 FlyBase:FBgn0010774 InParanoid:Q9V3E7
OrthoDB:EOG470S0M GenomeRNAi:44029 NextBio:836635 Uniprot:Q9V3E7
Length = 266
Score = 102 (41.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRSY--AFINFKI 77
GGG P+R L VGNL + + ++ + F FG ++ A + GRS A + F+
Sbjct: 103 GGGSG---PTR-LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFER 158
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
DA+ ++K G PL G P+ I+ A
Sbjct: 159 RADALKAIKQYHGVPLDGRPMTIQLA 184
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 98 (39.6 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 9 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 68
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 69 IDDSKEAMERANGMELDGRRIRVDYS 94
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 226 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 283
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 284 LDGSPIEVTLAK 295
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKM 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
+++T P R L+VG+L NI E L F FG+++++ + GRS Y FI + +
Sbjct: 329 KSHTGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNAD 387
Query: 80 DAIASMKALQGFPLAGNPLRI 100
DA +++ L GF LAG +++
Sbjct: 388 DAKKALEQLNGFELAGRLMKV 408
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 107 (42.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 107 (42.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 339 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 396
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 397 GENIEIVFAK 406
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 107 (42.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 398 GENIEIVFAK 407
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 344 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 401
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 402 GENIEIVFAK 411
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFKIEEDAIASMKAL 88
++VG L+ +I + L +F +GE++S+ F G+ YA+I + +EDA+ ++ L
Sbjct: 6 IYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDDL 65
Query: 89 QGFPLAGNPLRI 100
P GN L +
Sbjct: 66 NDQPFEGNHLEL 77
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEEDAIASMKA 87
R L+VGNL + E L + F + G + V + G+ +AF+NFK E +M
Sbjct: 7 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 66
Query: 88 LQGFPLAGNPLRIEF 102
L G L G P++I+F
Sbjct: 67 LNGIKLYGRPIKIQF 81
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGEL-ESVAF---QPGRS--YAFINFKIEEDAIASM 85
S L+VG LS ++++L F FGE+ E+ + GRS + F++F E+ A ++
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 86 KALQGFPLAGNPLRIEFA 103
K + G L G +R+ A
Sbjct: 94 KEMDGKELNGRQIRVNLA 111
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 355 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 412
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 413 GENIEIVFAK 422
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 100 (40.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMK 86
+ PP+ L++ NL E L+ F +F + V PGR AF+ F+ E A A+
Sbjct: 147 DNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENECQAGAARD 206
Query: 87 ALQGFPLA-GNPLRIEFAK 104
ALQGF + + ++I +AK
Sbjct: 207 ALQGFKITPSHAMKITYAK 225
Score = 98 (39.6 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG + + VA + R AF+ FK +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP G P+RI++AK
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 106 (42.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFTNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 106 (42.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGF 91
S ++VGNLS +L + F FG++ + + YAF++ + +EDA+ +++AL G
Sbjct: 82 STKVFVGNLSSMCTTEDLQELFQTFGKV--LECDKVKGYAFVHMENKEDALQAIEALHGT 139
Query: 92 PLAGNPLRIEFAK 104
G PL +E +K
Sbjct: 140 SFKGRPLSVELSK 152
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 101 (40.6 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQF 84
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 101 (40.6 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAEEADRTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQF 84
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 101 (40.6 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQF 84
>MGI|MGI:1914260 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
Length = 265
Score = 101 (40.6 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQF 84
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 101 (40.6 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQF 84
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 102 (41.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 31/90 (34%), Positives = 41/90 (45%)
Query: 22 GGGGR-ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFIN 74
G GG+ L V N+S EE L D F RFG + V R +AFI+
Sbjct: 211 GAGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFIS 270
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
F EDA+ + + G+ LR+EFAK
Sbjct: 271 FADREDAVKACNKMDGWGFKHLILRVEFAK 300
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 102 (41.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR--SYAFINFKIEEDAIASMKAL 88
SR ++VGNL +I E + D F ++G + + + P R YAF+ F DA ++
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 89 QGFPLAGNPLRIEFA 103
G+ G+ LR+E A
Sbjct: 66 DGYDFDGHRLRVELA 80
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 101 (40.6 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQF 84
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 101 (40.6 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGR--SYAFINFKIEE 79
G A R L+VGNL + E L + F + G + V + G+ +AF+NFK E
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 80 DAIASMKALQGFPLAGNPLRIEF 102
+M L G L G P++I+F
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQF 84
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 104 (41.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 28 NTP--PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF-------QPGRSYAFINFKIE 78
+TP PS L++GNLS N + + + F + GE+ SV QP + + ++ F
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQP-KGFGYVQFSNM 318
Query: 79 EDAIASMKALQGFPLAGNPLRIEFA 103
EDA ++ ALQG + P+R++F+
Sbjct: 319 EDAKKALDALQGEYIDNRPVRLDFS 343
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 99 (39.9 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 20 HSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIE 78
+S + PP++ L++ NL E L+ F +F + V P R AF+ F E
Sbjct: 129 NSNPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTE 188
Query: 79 EDAIASMKALQGFPLAG-NPLRIEFAK 104
+ A+ +ALQGF + + ++I FAK
Sbjct: 189 LQSNAAKEALQGFKITPTHAMKITFAK 215
Score = 93 (37.8 bits), Expect = 0.00027, P = 0.00027
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGE-LESVAFQP--GRSYAFINFKIEEDAIA 83
P++ +++ NL+ I++ L F +FG+ L+ VA + R AF+ FK A
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 84 SMKALQGFPLAGNPLRIEFAKA 105
+++ +QGFP P++I ++K+
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKS 86
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 106 (42.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFTNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>ZFIN|ZDB-GENE-050309-70 [details] [associations]
symbol:spen "spen homolog, transcriptional regulator
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050309-70 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:BX957326 EMBL:CU207252 IPI:IPI00497398
Ensembl:ENSDART00000109248 Bgee:F1QMN6 Uniprot:F1QMN6
Length = 3476
Score = 114 (45.2 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS +I E LT F R+G + V F + A I + E A A+
Sbjct: 557 GFGKSMPTTCVWLDGLSSSITEQYLTRHFCRYGHVVKVVFDRLKGMALILYNNIEYAQAA 616
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G+ + GN ++++FA
Sbjct: 617 VKETKGWKIGGNKIKVDFA 635
Score = 103 (41.3 bits), Expect = 0.00090, P = 0.00090
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-----AFINF 75
+RHLWVGNL N+ E + + F R+G +ESV P R AF++F
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKVLPKRGSEGGVAAFVDF 53
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 100 (40.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 100 (40.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 100 (40.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 100 (40.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 100 (40.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 100 (40.3 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELES----VAFQPGRS--YAFINFKIEEDAIASM 85
S L++G LS ++A+L D F FG++ V + GRS + F+NF E A A++
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 86 KALQGFPLAGNPLRI 100
+ G L G +R+
Sbjct: 94 SEMDGKELNGRHIRV 108
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
++VGN+S +A+L D F +G++ V + YAF+ ++ +E A ++ + G +A
Sbjct: 329 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMA 388
Query: 95 GNPLRIEFAK 104
GN +R + +
Sbjct: 389 GNQVRCSWGR 398
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 100 (40.3 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 100 (40.3 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 106 (42.4 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRS--YAFINFKIEEDAIA 83
T P+ L+ G+L + EA+L D F + SV Q RS YA+INF DA
Sbjct: 45 THPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYR 104
Query: 84 SMKALQGFPLAGNPLRI 100
+M+AL PL P+RI
Sbjct: 105 AMEALNYTPLFDRPIRI 121
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 100 (40.3 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 21 SGGG---GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFIN 74
SGGG G A R ++VGNL +I ++ D F ++G + + + R +AF+
Sbjct: 2 SGGGVIRGPAGNNDCR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F+ DA ++ G+ G LR+EF ++
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 96 (38.9 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGEL-------ESVAFQPGRSYAFINFKIEE 79
+++ P L+V LS E L D F +FG L + VA +P + +AF+ ++ EE
Sbjct: 71 SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRP-KGFAFLRYETEE 129
Query: 80 DAIASMKALQGFPLAGNPLRIEFAK 104
+A+ +++ + G L G + +E AK
Sbjct: 130 EAMKAIQGMHGKFLDGRVIFVEEAK 154
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 96 (38.9 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 9 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFER 68
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 69 IDDSKEAMEHANGMELDGRRIRVDYS 94
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 98 (39.6 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP+ L++ NL E L+ F +F + V PGR AF+ F+ + A A+ AL
Sbjct: 141 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 200
Query: 89 QGFPLA-GNPLRIEFAK 104
QGF + + ++I +AK
Sbjct: 201 QGFKITPSHAMKITYAK 217
Score = 98 (39.6 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG + + VA + R AF+ FK +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP G P+RI++AK
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 99 (39.9 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 19/74 (25%), Positives = 42/74 (56%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFINFKIEEDAIASMKALQGF 91
++VGNL +++E ++ D F ++G++ + + RS +AF+ F+ DA ++ G+
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNGY 65
Query: 92 PLAGNPLRIEFAKA 105
LR+E+ ++
Sbjct: 66 GFGDCKLRVEYPRS 79
>UNIPROTKB|F1MRB9 [details] [associations]
symbol:NOL8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:55035 OMA:DDSNRFK
GeneTree:ENSGT00390000004860 EMBL:DAAA02024046 IPI:IPI00693883
RefSeq:NP_001178142.1 UniGene:Bt.25395 Ensembl:ENSBTAT00000024770
GeneID:767872 KEGG:bta:767872 NextBio:20918231 Uniprot:F1MRB9
Length = 1160
Score = 108 (43.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKI 77
+AN R L+VG L NI EA+L +QF RFGE+ V P + +A+IN ++
Sbjct: 2 KANREMKR-LFVGGLGQNISEADLQNQFGRFGEVSDVEIITRKDDQGNPQKVFAYINIRV 60
Query: 78 EE-DAIASMKALQGFPLAGNPLRIEFAK 104
E D M L G L+I+ AK
Sbjct: 61 TEADLKKCMSVLNKTKWKGGTLQIQLAK 88
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 99 (39.9 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP++ L + N+ + LT F F + V PGR AF+ + + +A +
Sbjct: 171 PPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGT 230
Query: 89 QGFPLAGNPLRIEFAK 104
G L+GN +++ FA+
Sbjct: 231 TGMSLSGNQIKVTFAR 246
>UNIPROTKB|F8WE42 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097
HGNC:HGNC:23387 IPI:IPI00940050 ProteinModelPortal:F8WE42
SMR:F8WE42 Ensembl:ENST00000432670 ArrayExpress:F8WE42 Bgee:F8WE42
Uniprot:F8WE42
Length = 970
Score = 107 (42.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP+ L++ NL E L+ F +F + V PGR AF+ F+ + A A+ AL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207
Query: 89 QGFPLA-GNPLRIEFAK 104
QGF + + ++I +AK
Sbjct: 208 QGFKITPSHAMKITYAK 224
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG + + VA + R AF+ FK +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP G P+RI++AK
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP+ L++ NL E L+ F +F + V PGR AF+ F+ + A A+ AL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207
Query: 89 QGFPLA-GNPLRIEFAK 104
QGF + + ++I +AK
Sbjct: 208 QGFKITPSHAMKITYAK 224
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG + + VA + R AF+ FK +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP G P+RI++AK
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP+ L++ NL E L+ F +F + V PGR AF+ F+ + A A+ AL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207
Query: 89 QGFPLA-GNPLRIEFAK 104
QGF + + ++I +AK
Sbjct: 208 QGFKITPSHAMKITYAK 224
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG + + VA + R AF+ FK +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP G P+RI++AK
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP+ L++ NL E L+ F +F + V PGR AF+ F+ + A A+ AL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207
Query: 89 QGFPLA-GNPLRIEFAK 104
QGF + + ++I +AK
Sbjct: 208 QGFKITPSHAMKITYAK 224
Score = 98 (39.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG + + VA + R AF+ FK +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP G P+RI++AK
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 103 (41.3 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 34 HLWVGNLSHNIEEANLTDQFLRFGELES--VAF--QPG--RSYAFINFKIEEDAIASMKA 87
+L+VG+L+ N+++ L + F F S V + Q G R Y F++F ++DA +M +
Sbjct: 163 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 222
Query: 88 LQGFPLAGNPLRIEFA 103
+QG L G PLRI +A
Sbjct: 223 MQGQDLNGRPLRINWA 238
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASM 85
R+ P ++GN+ H EA+L F FG + P + FI + E A +
Sbjct: 334 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCI 393
Query: 86 KALQGFPLAGNPLRIEFAK 104
AL FP G LR + K
Sbjct: 394 VALANFPFQGRNLRTGWGK 412
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 102 (41.0 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ 89
P + ++VG LS + E L F FGE+ V PG+ F+ F A ++ +Q
Sbjct: 283 PNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQ 342
Query: 90 GFPLAGNPLRIEFAKA 105
G+P+ + +R+ + ++
Sbjct: 343 GYPIGNSRVRLSWGRS 358
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 98 (39.6 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKAL 88
PP+ L++ NL E L+ F +F + V PGR AF+ F+ + A A+ AL
Sbjct: 153 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 212
Query: 89 QGFPLA-GNPLRIEFAK 104
QGF + + ++I +AK
Sbjct: 213 QGFKITPSHAMKITYAK 229
Score = 98 (39.6 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPG--RSYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG + + VA + R AF+ FK +
Sbjct: 15 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 74
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP G P+RI++AK
Sbjct: 75 ALRQLQGFPFYGKPMRIQYAK 95
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 97 (39.2 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 100 (40.3 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ ++E L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|F5H101 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097
HGNC:HGNC:23387 IPI:IPI01013607 ProteinModelPortal:F5H101
SMR:F5H101 Ensembl:ENST00000544867 ArrayExpress:F5H101 Bgee:F5H101
Uniprot:F5H101
Length = 1085
Score = 107 (42.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>UNIPROTKB|Q76FK4 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0030307 "positive regulation of
cell growth" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 EMBL:AL136097 EMBL:AB105104
EMBL:AB109030 EMBL:AK000743 EMBL:AK001049 EMBL:AK022755
EMBL:AK024245 EMBL:AK024786 EMBL:BC013788 IPI:IPI00161085
IPI:IPI00480054 IPI:IPI00645407 IPI:IPI01014020
RefSeq:NP_001243323.1 RefSeq:NP_060418.4 UniGene:Hs.442199
ProteinModelPortal:Q76FK4 SMR:Q76FK4 IntAct:Q76FK4 STRING:Q76FK4
PhosphoSite:Q76FK4 DMDM:74758950 PaxDb:Q76FK4 PRIDE:Q76FK4
Ensembl:ENST00000358855 Ensembl:ENST00000442668
Ensembl:ENST00000535387 Ensembl:ENST00000542053
Ensembl:ENST00000545558 GeneID:55035 KEGG:hsa:55035 UCSC:uc022bjw.1
CTD:55035 GeneCards:GC09M095059 HGNC:HGNC:23387 HPA:HPA044440
MIM:611534 neXtProt:NX_Q76FK4 PharmGKB:PA134918056 eggNOG:NOG73280
HOVERGEN:HBG057565 InParanoid:Q76FK4 OMA:DDSNRFK GenomeRNAi:55035
NextBio:58463 ArrayExpress:Q76FK4 Bgee:Q76FK4 Genevestigator:Q76FK4
GermOnline:ENSG00000198000 Uniprot:Q76FK4
Length = 1167
Score = 107 (42.7 bits), Expect = 0.00010, P = 0.00010
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQ----FLRFGEL-ESVAFQPGR--SYAFINFKIEEDAIA 83
P+ +++ N++ I++ L F +FG++ + VA + R AF+ FK A
Sbjct: 14 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATN 73
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+++ LQGFP P+RI++AK
Sbjct: 74 ALRQLQGFPFYNKPMRIQYAK 94
Score = 92 (37.4 bits), Expect = 0.00041, P = 0.00041
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMK 86
+ PP+ L++ NL E L+ F +F + V PG+ +F+ F+ E A +
Sbjct: 150 DNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKD 209
Query: 87 ALQGFPLAGN-PLRIEFAK 104
ALQGF + ++I +AK
Sbjct: 210 ALQGFRITATCAMKITYAK 228
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 97 (39.2 bits), Expect = 0.00011, P = 0.00011
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 25 GRANTPPSRHLWVGNL---SHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDA 81
G+ PP+ L++ NL ++++ L +Q+ F E+ + +PG AF+ ++ + +
Sbjct: 147 GQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG--IAFVEYEDDVQS 204
Query: 82 IASMKALQGFPLAG-NPLRIEFAK 104
+M+ALQGF + NP+ + FAK
Sbjct: 205 SMAMQALQGFKITPQNPMVVSFAK 228
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 21 SGG--GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS---YAFINF 75
SGG G A + R ++VGNL +I ++ D F ++G + + + R +AF+ F
Sbjct: 2 SGGVIRGPAGSNDCR-IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEF 60
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
+ DA ++ A G+ G LR+EF ++
Sbjct: 61 EDPRDAEDAVYARDGYDYDGYRLRVEFPRS 90
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R ++VG L+ + E L + F+ FG++ + Q R +AFI ++ EDA A++
Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNDSELCGRTIRVNLAK 83
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 104 (41.7 bits), Expect = 0.00012, P = 0.00012
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 22 GGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES-VAFQ--PGRS--YAFINFK 76
GGGGR N+ P++ L+V LS + + L D F G + + +A G S + F++F
Sbjct: 546 GGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSF--DGAIAARIATDRDTGSSKGFGFVDFD 603
Query: 77 IEEDAIASMKALQGFPLAGNPLRIEFAK 104
E+D A+ +A+ + GN + +++AK
Sbjct: 604 NEQDCKAAKEAMDDGEIDGNKVTLDYAK 631
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 110 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 169
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 170 IDDSKEAMERANGMELDGRRIRVDYS 195
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 110 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 169
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 170 IDDSKEAMERANGMELDGRRIRVDYS 195
>UNIPROTKB|E1BNF6 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:DAAA02043252 IPI:IPI00923891 Ensembl:ENSBTAT00000061139
Uniprot:E1BNF6
Length = 3653
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + E A A+
Sbjct: 510 GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAA 569
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 570 VKETKGRKIGGNKIKVDFA 588
>UNIPROTKB|F1MRK2 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050769 "positive regulation of neurogenesis"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001191 "RNA
polymerase II transcription factor binding transcription factor
activity involved in negative regulation of transcription"
evidence=IEA] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0017053 GO:GO:0003714
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003700
GO:GO:0050769 GO:GO:0003697 GO:GO:0001191 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 OMA:KHLKPEQ InterPro:IPR010912
GeneTree:ENSGT00530000063730 EMBL:DAAA02043252 IPI:IPI01003198
Ensembl:ENSBTAT00000024930 Uniprot:F1MRK2
Length = 3655
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + E A A+
Sbjct: 511 GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAA 570
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 571 VKETKGRKIGGNKIKVDFA 589
>UNIPROTKB|Q96T58 [details] [associations]
symbol:SPEN "Msx2-interacting protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007219 "Notch signaling pathway"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IMP]
[GO:0001191 "RNA polymerase II transcription factor binding
transcription factor activity involved in negative regulation of
transcription" evidence=IDA] [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IPI] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0017053 GO:GO:0003714 GO:GO:0019048
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219
GO:GO:0003700 GO:GO:0003723 GO:GO:0050769 GO:GO:0003697
eggNOG:NOG12793 GO:GO:0001191 InterPro:IPR012921 Pfam:PF07744
EMBL:AL450998 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 EMBL:AF356524 EMBL:AL034555 EMBL:AL096858
EMBL:AK000882 EMBL:AK022949 EMBL:AB023146 IPI:IPI00045914
RefSeq:NP_055816.2 UniGene:Hs.731396 PDB:1OW1 PDBsum:1OW1
ProteinModelPortal:Q96T58 SMR:Q96T58 IntAct:Q96T58 STRING:Q96T58
PhosphoSite:Q96T58 DMDM:41688816 PaxDb:Q96T58 PRIDE:Q96T58
Ensembl:ENST00000375759 GeneID:23013 KEGG:hsa:23013 UCSC:uc001axk.1
CTD:23013 GeneCards:GC01P016174 H-InvDB:HIX0159662 HGNC:HGNC:17575
HPA:HPA015825 MIM:613484 neXtProt:NX_Q96T58 PharmGKB:PA134895302
HOGENOM:HOG000231295 HOVERGEN:HBG045583 InParanoid:Q96T58
OMA:KHLKPEQ OrthoDB:EOG4JM7NS PhylomeDB:Q96T58 ChiTaRS:SPEN
EvolutionaryTrace:Q96T58 GenomeRNAi:23013 NextBio:43936
ArrayExpress:Q96T58 Bgee:Q96T58 CleanEx:HS_SPEN
Genevestigator:Q96T58 GermOnline:ENSG00000065526 InterPro:IPR010912
Uniprot:Q96T58
Length = 3664
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + E A A+
Sbjct: 509 GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAA 568
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 569 VKETKGRKIGGNKIKVDFA 587
Score = 104 (41.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-----AFINF 75
+RHLWVGNL N+ E + + F R+G +ESV P R AF++F
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDF 53
Score = 31 (16.0 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 87 ALQGFPLAGNPLR 99
A QG P G PL+
Sbjct: 3340 AAQGPPPEGEPLQ 3352
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 110 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 169
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 170 IDDSKEAMERANGMELDGRRIRVDYS 195
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 108 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 167
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 168 IDDSKEAMERANGMELDGRRIRVDYS 193
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 110 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 169
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 170 IDDSKEAMERANGMELDGRRIRVDYS 195
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 108 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFER 167
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 168 IDDSKEAMERANGMELDGRRIRVDYS 193
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLR---FGELESVAFQPGRSYAFINFKIEEDAIA 83
A PP+ L+V NL H L F + F E+ + +PG AF+ F E +
Sbjct: 171 APAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--IAFVEFADEMQSTV 228
Query: 84 SMKALQGFPLAGNPLRIEFAK 104
+M+ LQGF + N + I +AK
Sbjct: 229 AMQGLQGFKIQQNQMLITYAK 249
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>ZFIN|ZDB-GENE-081104-82 [details] [associations]
symbol:si:ch1073-335m2.2 "si:ch1073-335m2.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-081104-82 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:CU652212 EMBL:CU693473 IPI:IPI00932066
Ensembl:ENSDART00000110807 ArrayExpress:F1Q618 Bgee:F1Q618
Uniprot:F1Q618
Length = 3103
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ L+ NI E LT F R+G + V F + A + + + A A+
Sbjct: 509 GFGKSMPTACVWLDGLTSNITEQYLTRHFCRYGPVVKVVFDRLKGMALVLYNNTDFAQAA 568
Query: 85 MKALQGFPLAGNPLRIEFA 103
++ +G+ + GN ++++FA
Sbjct: 569 VRETKGWKIGGNKIKVDFA 587
>ZFIN|ZDB-GENE-050417-167 [details] [associations]
symbol:ppie "peptidylprolyl isomerase E
(cyclophilin E)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050417-167 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 CTD:10450 KO:K09564 OrthoDB:EOG4STS55
EMBL:BC093329 IPI:IPI00511584 RefSeq:NP_001017678.1
UniGene:Dr.79339 ProteinModelPortal:Q561T2 SMR:Q561T2 GeneID:550373
KEGG:dre:550373 InParanoid:Q561T2 NextBio:20879625 Uniprot:Q561T2
Length = 302
Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ ++E L F+ FG++ + + R +AFI F++ ED+ A++
Sbjct: 6 RVLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNIAK 83
>UNIPROTKB|Q9GRX4 [details] [associations]
symbol:nonA "Protein no-on-transient A" species:47316
"Drosophila littoralis" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0007601
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0050896 InterPro:IPR012975
Pfam:PF08075 EMBL:AJ296178 ProteinModelPortal:Q9GRX4 PRIDE:Q9GRX4
FlyBase:FBgn0043410 Uniprot:Q9GRX4
Length = 698
Score = 93 (37.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+VGNL+++I + L + F +GE+ + +++ F+ +A + +AL G
Sbjct: 283 LYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKVDYHINAEKAKRALDGSMRK 342
Query: 95 GNPLRIEFA 103
G LR+ FA
Sbjct: 343 GRQLRVRFA 351
Score = 32 (16.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 22 GGGGRANTPPSR 33
GGGGR SR
Sbjct: 218 GGGGRDRNRGSR 229
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L++G L+ N E L D F FG + V Q R + FI F E A +M+ +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGKSLDGRQIRVDHA 82
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>POMBASE|SPBC428.12c [details] [associations]
symbol:SPBC428.12c "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC428.12c GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q9UNP9 PIR:T40464 RefSeq:NP_595190.1 ProteinModelPortal:O94359
EnsemblFungi:SPBC428.12c.1 GeneID:2540852 KEGG:spo:SPBC428.12c
eggNOG:NOG331137 OrthoDB:EOG4TJ03G NextBio:20801968 Uniprot:O94359
Length = 116
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 37 VGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGF 91
VGNL+ ++ E+ L + F+ FGE+ SVA RSYAF+ F EDA +M+ +
Sbjct: 10 VGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYS 69
Query: 92 PLAGNPLRI 100
L +R+
Sbjct: 70 ILCDRCIRV 78
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVA----FQPGRS--YAFIN 74
+ GG A + L+VG+L N+ ++ L D F + G + +V RS Y ++N
Sbjct: 24 TSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVN 83
Query: 75 FKIEEDAIASMKALQGFPLAGNPLRIEFA 103
F +DA +++ L PL G P+R+ ++
Sbjct: 84 FTNPQDAARAIQELNYIPLYGKPIRVMYS 112
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRS--YAFINFKIE 78
GG A R L+VGNL + E + + F + G + V + G+ +AF++FK E
Sbjct: 2 GGTA-AEADRTLFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQKQFAFVSFKHE 60
Query: 79 EDAIASMKALQGFPLAGNPLRIEF 102
E M L G L G P+ I+F
Sbjct: 61 ESVPYGMNLLNGIKLYGRPINIQF 84
>UNIPROTKB|F1SUF5 [details] [associations]
symbol:NOL8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030307 "positive regulation of cell growth"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:DDSNRFK GeneTree:ENSGT00390000004860
EMBL:CU855543 Ensembl:ENSSSCT00000008842 Uniprot:F1SUF5
Length = 961
Score = 104 (41.7 bits), Expect = 0.00017, P = 0.00017
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE-DAI 82
++ L+VG L NI E +L +QF RFGE+ V P + +A++N +I E D
Sbjct: 7 TKRLFVGGLGQNISEGDLQNQFNRFGEVSDVEIITRKDDQGNPQKVFAYVNIRIAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 19 THSGGGGRANT--PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP---GRS--YA 71
T+ G G A + PP +++V +L + + L F FG + S Q GR+ Y
Sbjct: 134 TNFPGKGSAPSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYG 193
Query: 72 FINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
F++F E A+ ++K + GF ++G L+++ K
Sbjct: 194 FVSFNNPESALNAIKGMHGFYVSGKHLKVQLKK 226
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 19 THSGGGGRANT--PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP---GRS--YA 71
T+ G G A + PP +++V +L + + L F FG + S Q GR+ Y
Sbjct: 134 TNFPGKGSAPSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYG 193
Query: 72 FINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104
F++F E A+ ++K + GF ++G L+++ K
Sbjct: 194 FVSFNNPESALNAIKGMHGFYVSGKHLKVQLKK 226
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 93 (37.8 bits), Expect = 0.00019, P = 0.00019
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIASMKAL 88
++VGNL + E L D+F FG L +V A +P YAF+ F E DA+ ++ AL
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPP-GYAFLEFDDERDALDAISAL 58
>WB|WBGene00017778 [details] [associations]
symbol:psf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0002009 "morphogenesis of
an epithelium" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 EMBL:FO081045 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 KO:K13219
UniGene:Cel.18121 GeneID:175844 KEGG:cel:CELE_F25B5.7 CTD:175844
NextBio:889920 RefSeq:NP_498295.3 ProteinModelPortal:B3GWA1
SMR:B3GWA1 STRING:B3GWA1 PRIDE:B3GWA1 EnsemblMetazoa:F25B5.7a
WormBase:F25B5.7a HOGENOM:HOG000018765 InParanoid:B3GWA1
OMA:ERMIPRT ArrayExpress:B3GWA1 Uniprot:B3GWA1
Length = 562
Score = 90 (36.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+VGNL + ++E L + F G++ + G+ +AF+ A ++ +A+ G +
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAE-CYLSGKGFAFLRLDTRAHAESAKEAIDGRIIH 176
Query: 95 GNPLRIEFA 103
G +R+ FA
Sbjct: 177 GRQVRVRFA 185
Score = 32 (16.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 21 SGGGGRAN 28
SGGGG N
Sbjct: 49 SGGGGGGN 56
Score = 30 (15.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 22 GGGGRA 27
GGGGR+
Sbjct: 81 GGGGRS 86
>SGD|S000005504 [details] [associations]
symbol:NOP8 "Nucleolar protein required for 60S ribosomal
subunit biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
SGD:S000005504 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0042273 EMBL:Z74886
PIR:S61870 RefSeq:NP_014497.1 ProteinModelPortal:Q08287 SMR:Q08287
DIP:DIP-4206N IntAct:Q08287 MINT:MINT-511884 STRING:Q08287
PaxDb:Q08287 PeptideAtlas:Q08287 EnsemblFungi:YOL144W GeneID:854021
KEGG:sce:YOL144W CYGD:YOL144w eggNOG:NOG19224 HOGENOM:HOG000113829
KO:K14836 OMA:TKLWGYE OrthoDB:EOG41RT3S NextBio:975553
Genevestigator:Q08287 GermOnline:YOL144W Uniprot:Q08287
Length = 484
Score = 100 (40.3 bits), Expect = 0.00019, P = 0.00019
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 33 RHLWVGNLSHNIEE--ANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASM--KAL 88
+ ++VGN+ HN ++ + L D+F +FG+ + F+ +AFI+ + ++A + K+
Sbjct: 7 KRIFVGNIFHNADDCYSELLDRFGKFGDCQDFQFEKHNHFAFIDIRFNDEADFNKLRKSF 66
Query: 89 QGFPLAGNPLRIEFAK 104
GN L+++ AK
Sbjct: 67 NNVKFKGNILKVDEAK 82
>UNIPROTKB|A4FV72 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
KO:K09564 NextBio:20928622 Uniprot:A4FV72
Length = 301
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|G3MZS9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0006457 "protein folding"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
Length = 301
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|E2QVB5 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 EMBL:AAEX03009569
EMBL:AAEX03009570 RefSeq:XP_848739.1 Ensembl:ENSCAFT00000004892
GeneID:607232 KEGG:cfa:607232 NextBio:20892973 Uniprot:E2QVB5
Length = 301
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|Q9UNP9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=IMP] [GO:0016018 "cyclosporin A binding"
evidence=TAS] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0006355 GO:GO:0000166 EMBL:CH471059
EMBL:AL035404 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 EMBL:AL033527 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0016018 PDB:2KU7 PDBsum:2KU7
HOVERGEN:HBG001065 CTD:10450 KO:K09564 EMBL:AF104012 EMBL:AF104013
EMBL:AF042385 EMBL:AF042386 EMBL:AK313666 EMBL:AL049824
EMBL:BC004898 EMBL:BC008451 EMBL:BC107736 IPI:IPI00009316
IPI:IPI00220188 PIR:S66681 RefSeq:NP_006103.1 RefSeq:NP_982281.1
UniGene:Hs.524690 PDB:1ZMF PDB:2CQB PDB:2KYX PDB:2R99 PDB:3LPY
PDB:3MDF PDB:3UCH PDBsum:1ZMF PDBsum:2CQB PDBsum:2KYX PDBsum:2R99
PDBsum:3LPY PDBsum:3MDF PDBsum:3UCH ProteinModelPortal:Q9UNP9
SMR:Q9UNP9 IntAct:Q9UNP9 STRING:Q9UNP9 PhosphoSite:Q9UNP9
DMDM:13124097 PaxDb:Q9UNP9 PRIDE:Q9UNP9 DNASU:10450
Ensembl:ENST00000324379 Ensembl:ENST00000356511 GeneID:10450
KEGG:hsa:10450 UCSC:uc001cds.2 UCSC:uc001cdv.3
GeneCards:GC01P040157 HGNC:HGNC:9258 HPA:HPA020131 MIM:602435
neXtProt:NX_Q9UNP9 PharmGKB:PA33583 OrthoDB:EOG4STS55
PhylomeDB:Q9UNP9 ChiTaRS:PPIE EvolutionaryTrace:Q9UNP9
GenomeRNAi:10450 NextBio:39609 ArrayExpress:Q9UNP9 Bgee:Q9UNP9
CleanEx:HS_PPIE Genevestigator:Q9UNP9 GermOnline:ENSG00000084072
Uniprot:Q9UNP9
Length = 301
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|F1SV03 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 KO:K09564 OMA:AFIEFEL EMBL:CR956427
RefSeq:XP_003127865.1 Ensembl:ENSSSCT00000004060 GeneID:100516562
KEGG:ssc:100516562 Uniprot:F1SV03
Length = 301
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>MGI|MGI:1917118 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917118 GO:GO:0006457 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065
CTD:10450 KO:K09564 OMA:AFIEFEL OrthoDB:EOG4STS55 EMBL:AK008177
EMBL:BC045154 EMBL:AF182825 IPI:IPI00111343 RefSeq:NP_062362.1
UniGene:Mm.126873 ProteinModelPortal:Q9QZH3 SMR:Q9QZH3
STRING:Q9QZH3 PhosphoSite:Q9QZH3 REPRODUCTION-2DPAGE:IPI00111343
PaxDb:Q9QZH3 PRIDE:Q9QZH3 Ensembl:ENSMUST00000030404 GeneID:56031
KEGG:mmu:56031 UCSC:uc008uow.1 InParanoid:Q9QZH3 NextBio:311788
Bgee:Q9QZH3 CleanEx:MM_PPIE Genevestigator:Q9QZH3
GermOnline:ENSMUSG00000028651 Uniprot:Q9QZH3
Length = 301
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGGTLCGCRVRVELS 81
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIA 83
R + P ++VGNL +N + L F +G L SV A P +AF+ F+ DA
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAAD 61
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+++ L G L G +R+E +
Sbjct: 62 AVRELDGRTLCGCRVRVELS 81
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 96 (38.9 bits), Expect = 0.00020, P = 0.00020
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR--SYAFINFKIEEDAIASMKAL 88
+R ++VGNL +I + + D F ++G + + + P R YAF+ F+ DA ++
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 89 QGFPLAGNPLRIEFA 103
G+ G LR+E A
Sbjct: 66 DGYDFDGCRLRVEIA 80
>UNIPROTKB|D4A6K1 [details] [associations]
symbol:Rbm41 "Protein Rbm41" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951350
ProteinModelPortal:D4A6K1 Ensembl:ENSRNOT00000065141 RGD:1590579
ArrayExpress:D4A6K1 Uniprot:D4A6K1
Length = 425
Score = 99 (39.9 bits), Expect = 0.00021, P = 0.00021
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELES--VAFQ--PGR--SYAFINFKIEEDAIAS 84
P++ L++ NLS ++E +L F RF E + + FQ GR AFI F ++ A +
Sbjct: 319 PNKVLYLKNLSPRVKERDLISLFARFQEKKGPLIQFQMMTGRMRGQAFITFPNKDIAWQA 378
Query: 85 MKALQGFPLAGNPLRIEFAKA 105
+ + G+ L G L IEFAK+
Sbjct: 379 LHQINGYKLYGKILVIEFAKS 399
>UNIPROTKB|Q5TGA3 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 EMBL:AL035404
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL033527 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 HOVERGEN:HBG001065 CTD:10450
KO:K09564 OMA:AFIEFEL EMBL:AL049824 UniGene:Hs.524690 DNASU:10450
GeneID:10450 KEGG:hsa:10450 HGNC:HGNC:9258 ChiTaRS:PPIE
GenomeRNAi:10450 NextBio:39609 IPI:IPI00514173
RefSeq:NP_001181936.1 SMR:Q5TGA3 MINT:MINT-1475497 STRING:Q5TGA3
Ensembl:ENST00000372830 UCSC:uc001cdw.3 Uniprot:Q5TGA3
Length = 314
Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|F5GXV1 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01012406 SMR:F5GXV1 Ensembl:ENST00000360868
Ensembl:ENST00000434228 Ensembl:ENST00000536593
Ensembl:ENST00000542573 Ensembl:ENST00000543260
Ensembl:ENST00000544321 Uniprot:F5GXV1
Length = 86
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKIEE 79
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAE 62
>UNIPROTKB|E1BV40 [details] [associations]
symbol:Gga.17720 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:AADN02040740 EMBL:AADN02040741 EMBL:AADN02040742
EMBL:AADN02040743 EMBL:AADN02040744 EMBL:AADN02040745
IPI:IPI00820922 Ensembl:ENSGALT00000039821 ArrayExpress:E1BV40
Uniprot:E1BV40
Length = 3586
Score = 109 (43.4 bits), Expect = 0.00021, P = 0.00021
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + E A A+
Sbjct: 509 GFGKSMPTNCVWLDGLSTNVTDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAA 568
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 569 VKETKGRKIGGNKIKVDFA 587
>UNIPROTKB|E1C4T6 [details] [associations]
symbol:Gga.17720 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=IEA] [GO:0001191 "RNA polymerase II transcription factor
binding transcription factor activity involved in negative
regulation of transcription" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0017053
GO:GO:0003714 GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0003697 GO:GO:0001191 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 OMA:KHLKPEQ InterPro:IPR010912
GeneTree:ENSGT00530000063730 EMBL:AADN02040740 EMBL:AADN02040741
EMBL:AADN02040742 EMBL:AADN02040743 EMBL:AADN02040744
EMBL:AADN02040745 IPI:IPI00580713 ProteinModelPortal:E1C4T6
Ensembl:ENSGALT00000005804 ArrayExpress:E1C4T6 Uniprot:E1C4T6
Length = 3607
Score = 109 (43.4 bits), Expect = 0.00022, P = 0.00022
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + E A A+
Sbjct: 508 GFGKSMPTNCVWLDGLSTNVTDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAA 567
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 568 VKETKGRKIGGNKIKVDFA 586
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 96 (38.9 bits), Expect = 0.00022, P = 0.00022
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKI 77
G RAN P+ L V LS E +L + F R+G L V + GRS +AF+ F+
Sbjct: 112 GSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFER 171
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFA 103
+D+ +M+ G L G +R++++
Sbjct: 172 IDDSKEAMEHANGMELDGRRIRVDYS 197
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 93 (37.8 bits), Expect = 0.00023, P = 0.00023
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIASMKALQG 90
++VGNL + E L D+F FG + SV A +P YAF++F+ DA +++AL G
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPP-GYAFLDFEDPRDARDAIRALDG 60
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 95 (38.5 bits), Expect = 0.00023, P = 0.00023
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG-- 90
RH++VGN ++ ++L F +FG ++ V + G YAF+ F+ E DA +++
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSG--YAFVYFEDERDAEDAIRRTDNTT 59
Query: 91 FPLAGNPLRIEFAK 104
F L +E+AK
Sbjct: 60 FGYGRRKLSVEWAK 73
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 96 (38.9 bits), Expect = 0.00024, P = 0.00024
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR----SYAFINFKIEEDAIAS 84
T P+ ++VGNL+ N+E + L F FG++ SV + ++ F++ + E A +
Sbjct: 13 TTPAHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFKSNTFGFVDMEDLETANKA 72
Query: 85 MKALQGFPLAGNPLRIEFAK 104
+ A+ G G + +E A+
Sbjct: 73 VAAINGREFDGKQVNVEIAR 92
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 95 (38.5 bits), Expect = 0.00024, P = 0.00024
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIASMKA 87
P R ++VG+L +N + +L F +G L SV A P +AF+ F+ DA +++
Sbjct: 5 PSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPP-GFAFVEFESARDAADAVRG 63
Query: 88 LQGFPLAGNPLRIEFA 103
L G + G R+E +
Sbjct: 64 LDGRTVCGRRARVELS 79
>UNIPROTKB|J9P7U8 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 OMA:AFIEFEL EMBL:AAEX03009569
EMBL:AAEX03009570 Ensembl:ENSCAFT00000046678 Uniprot:J9P7U8
Length = 343
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R L+VG L+ +++ L F+ FG++ + + R +AF+ F++ EDA A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNESELFGRTIRVNLAK 83
>UNIPROTKB|C9IZL7 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590762 HGNC:HGNC:7871 HOGENOM:HOG000231095
IPI:IPI00645966 ProteinModelPortal:C9IZL7 SMR:C9IZL7 STRING:C9IZL7
PRIDE:C9IZL7 Ensembl:ENST00000454976 ArrayExpress:C9IZL7
Bgee:C9IZL7 Uniprot:C9IZL7
Length = 207
Score = 93 (37.8 bits), Expect = 0.00025, P = 0.00025
Identities = 25/80 (31%), Positives = 37/80 (46%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIA 83
G + T SR L+VGNL +I E + F ++G+ V + + FI + A
Sbjct: 66 GEKTFTQRSR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEI 124
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+ L PL G LR+ FA
Sbjct: 125 AKVELDNMPLRGKQLRVRFA 144
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 94 (38.1 bits), Expect = 0.00025, P = 0.00025
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLT---DQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMK 86
PP+ L++ NL L Q+ F E+ + +PG AF+ ++ + ++ +M+
Sbjct: 155 PPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--IAFVEYEDDSQSMVAMQ 212
Query: 87 ALQGFPLAG-NPLRIEFAK 104
ALQGF + NP+ I +AK
Sbjct: 213 ALQGFKITPYNPMAISYAK 231
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 94 (38.1 bits), Expect = 0.00025, P = 0.00025
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 30 PPSRHLWVGNLSHNIEEANLT---DQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMK 86
PP+ L++ NL L Q+ F E+ + +PG AF+ ++ + ++ +M+
Sbjct: 155 PPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--IAFVEYEDDSQSMVAMQ 212
Query: 87 ALQGFPLAG-NPLRIEFAK 104
ALQGF + NP+ I +AK
Sbjct: 213 ALQGFKITPYNPMAISYAK 231
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
R ++VGN + +++L F ++G ++ V + G YAF+ F+ E DA +++ L FP
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG--YAFVYFEDERDAEDAIRKLDNFP 59
Query: 93 LAGNPLR--IEFAK 104
R +E+AK
Sbjct: 60 FGYEKRRLSVEWAK 73
WARNING: HSPs involving 135 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 105 88 0.00091 102 3 11 22 0.49 29
29 0.49 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 385
No. of states in DFA: 519 (55 KB)
Total size of DFA: 98 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.02u 0.11s 11.13t Elapsed: 00:00:01
Total cpu time: 11.04u 0.11s 11.15t Elapsed: 00:00:01
Start: Mon May 20 16:45:18 2013 End: Mon May 20 16:45:19 2013
WARNINGS ISSUED: 2