BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036554
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGF 91
S +LWVG+L+ E++LT+ F R+G+++ + R +AFI ++ E+A+A+ +ALQG
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 92 PLAGNPLRIEFAK 104
L G+ ++IE+A+
Sbjct: 77 NLNGSQIKIEYAR 89
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG 90
P + LWVG + N+ + +L ++F +FG++E F R AFI++ +DA+ + K++ G
Sbjct: 93 PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 151
Query: 91 FPLAGNPLRIEFAKA 105
P+ G+ LR++F ++
Sbjct: 152 KPMGGSFLRVDFLRS 166
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 20 HSGGGGRANTPPSRHLWVG---NLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFK 76
HS + + PS+ LW+G + +E L + + FGE+E V P R++A + F+
Sbjct: 193 HSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFR 252
Query: 77 IEEDAIASMKALQG 90
E+A + LQG
Sbjct: 253 SAEEARQCKEGLQG 266
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 406 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 463
Query: 83 ASMKALQGFPLAGNP--LRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 464 AACAKMRGFPLGGPDRRLRVDFAKA 488
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 332 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 391
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 392 AMSGRVIGRNPIKIGYGKA 410
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+AN P+ LWVG L N A L +F RFG + ++ G S+A+I ++ + A
Sbjct: 410 GYGKAN--PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQ 467
Query: 83 ASMKALQGFPLAGNP--LRIEFAKA 105
A+ ++GFPL G LR++FAKA
Sbjct: 468 AACAKMRGFPLGGPDRRLRVDFAKA 492
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R+L++GNL H++ E L F ++G +E V + P R +YAF+ F+ + A +
Sbjct: 336 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKV 395
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 396 AMSGRVIGRNPIKIGYGKA 414
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAI 82
G G+A P+ LWVG L + A L +F RFG + ++ ++ G S+A+I ++ + A
Sbjct: 447 GYGKAT--PTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAH 504
Query: 83 ASMKALQGFPLAGNP--LRIEFA 103
A+ ++GFPL G LR++FA
Sbjct: 505 AAWTHMRGFPLGGPDRRLRVDFA 527
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGR----SYAFINFKIEEDAIASMK 86
+R L++GNL + E++L F RFG + V + P R +Y F+ F+ + + +
Sbjct: 373 NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKL 432
Query: 87 ALQGFPLAGNPLRIEFAKA 105
A+ G + NP++I + KA
Sbjct: 433 AMSGKIIIRNPIKIGYGKA 451
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 39 NLSHNIEEANLTDQFLRFGELE-SVAFQPG-----RSYAFINFKIEEDAIASMKALQGFP 92
LS E L +F RFG++ ++ G AF+NF+ EDA A+ A
Sbjct: 180 QLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLV 239
Query: 93 LAGNPLRIE 101
L PL+IE
Sbjct: 240 LYDRPLKIE 248
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESV--AFQPGRSYAFINFKIEEDAIASMKALQGFP 92
++VGNL+ +++ +L +F ++G+L SV AF P +AF+ F+ +DA + L G
Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNP-PGFAFVEFEHRDDAEKACDILNGSE 67
Query: 93 LAGNPLRIEFAK 104
L G+ LR+E +K
Sbjct: 68 LLGSQLRVEISK 79
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR--SYAFINFKIEEDAIASMKALQ 89
+ ++VGNL ++ E + D F ++G ++ V + GR ++AF+ F+ DA +++A
Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARD 67
Query: 90 GFPLAGNPLRIEFA 103
G+ G +R+EF
Sbjct: 68 GYEFDGRRIRVEFT 81
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 21 SGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-----YAFINF 75
SG GG L V NL + +A++ + F FG L+ A RS A ++F
Sbjct: 63 SGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF 122
Query: 76 KIEEDAIASMKALQGFPLAGNPLRIEFA 103
+ DA+ +MK +G PL G P+ I+
Sbjct: 123 ERRADALKAMKQYKGVPLDGRPMDIQLV 150
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + EDA A+
Sbjct: 510 GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYSEIEDAQAA 569
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 570 VKETKGRKIGGNKIKVDFA 588
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-----AFINF 75
+RHLWVGNL N+ E + + F R+G +ESV P R AF++F
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDF 53
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR---SYAFINFKIEEDAIASMKAL 88
+R L++GNL +L + F RFGE+ + + YAF+ + ++K +
Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 497
Query: 89 QGFPLAGNPLRIEFAKA 105
G L N L++ F K+
Sbjct: 498 DGEYLGNNRLKLGFGKS 514
>sp|Q76FK4|NOL8_HUMAN Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1
Length = 1167
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--------QPGRSYAFINFKI-EEDAI 82
++ L+VG LS +I EA+L +QF RFGE+ V P + +A+IN + E D
Sbjct: 7 TKRLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLK 66
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
M L G L+I+ AK
Sbjct: 67 KCMSVLNKTKWKGGTLQIQLAK 88
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 8 ERFRGGRFEDRTHSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--- 64
E+ R + G G P R L+VG+L NI E L F FG +ES+
Sbjct: 231 EKNRAAAMANNLQKGSAG-----PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 65 -QPGRS--YAFINFKIEEDAIASMKALQGFPLAGNPLRI 100
+ GRS Y FI F E A +++ L GF LAG P+++
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 8 ERFRGGRFEDRTHSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--- 64
E+ R + G G P R L+VG+L NI E L F FG +ES+
Sbjct: 231 EKNRAAAMANNLQKGSAG-----PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 65 -QPGRS--YAFINFKIEEDAIASMKALQGFPLAGNPLRI 100
+ GRS Y FI F E A +++ L GF LAG P+++
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 8 ERFRGGRFEDRTHSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF--- 64
E+ R + G G P R L+VG+L NI E L F FG +ES+
Sbjct: 231 EKNRAAAMANNLQKGSAG-----PMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 284
Query: 65 -QPGRS--YAFINFKIEEDAIASMKALQGFPLAGNPLRI 100
+ GRS Y FI F E A +++ L GF LAG P+++
Sbjct: 285 SETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV---AFQPG---RSYAFINFKIEED 80
+ PPSR L+VGNLS ++ + L F G++ + F+ + +AFI+FK EE
Sbjct: 233 SKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEG 292
Query: 81 AIASMKALQGFPLAGNPLRIEFAK 104
+ ++K +AG PLR+E+ +
Sbjct: 293 STNALKDKSCRKIAGRPLRMEYGE 316
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 27 ANT-PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEE 79
ANT PS L V L+ EE +L D+F RFG+++ V + GRS + F+ F+ +E
Sbjct: 106 ANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKE 165
Query: 80 DAIASMKALQGFPLAGNPLRIEFA 103
DA+ + + Q L G +R +F+
Sbjct: 166 DAVRAKEECQDLQLHGKSIRTDFS 189
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-----YAFINFKIEEDAIASMKALQ 89
L V NL + +A++ + F FG L+ A RS A ++F+ + DA+ +MK
Sbjct: 111 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 170
Query: 90 GFPLAGNPLRIEFAKA 105
G PL G P+ I+ +
Sbjct: 171 GVPLDGRPMNIQLVTS 186
>sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1
Length = 256
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-----YAFINFKIEEDAIASMKALQ 89
L V NL + +A++ + F FG L+ A RS A ++F+ + DA+ +MK
Sbjct: 108 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 167
Query: 90 GFPLAGNPLRIEFAKA 105
G PL G P+ I+ +
Sbjct: 168 GVPLDGRPMNIQLVTS 183
>sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1
Length = 254
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 2 GRGGGRER----FRGGRF-----EDRTHSGGGGRANTPPSRHLWVGNLSHNIEEANLTDQ 52
RGGGR R R + D SG G A L V NL + +A++ +
Sbjct: 63 ARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQEL 122
Query: 53 FLRFGELESVAFQPGRS-----YAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105
F FG L+ A RS A ++F+ + DA+ +MK G PL G P+ I+ +
Sbjct: 123 FAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 180
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF----QPGRS--YAFINFKIEEDAIASMKAL 88
L+VG+L NI E L F FG+++++ GRS Y FI F E A +++ L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 89 QGFPLAGNPLRI 100
GF LAG P+R+
Sbjct: 325 NGFELAGRPMRV 336
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRS--YAFINFKIEEDAIA 83
T P+ L+ G+L + EA+L D F + SV Q RS YA+INF DA
Sbjct: 45 THPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYR 104
Query: 84 SMKALQGFPLAGNPLRIEFA 103
+M+AL PL P+RI +
Sbjct: 105 AMEALNYTPLFDRPIRIMLS 124
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 34 HLWVGNLSHNIEEANLTDQFLRFGELES--VAFQP---GRSYAFINFKIEEDAIASMKAL 88
+L++ NL ++++ L + F +G + S V P R + F+ + E+A+ ++ +
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEM 392
Query: 89 QGFPLAGNPLRIEFAK 104
G + PL I A+
Sbjct: 393 NGKMIGRKPLYIALAQ 408
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGEL--ESVAFQP-GRSYAF--INFKIEEDAIAS 84
P S ++VGNL + NL D F G + +A++P GRS F + F+ E DA +S
Sbjct: 307 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASS 366
Query: 85 MKALQGFPLAGNPLRIEFA 103
++ L G+ G PL++ +A
Sbjct: 367 IEKLNGYRYGGRPLQLSYA 385
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF---QPGRS--YAFINFKIEEDAI 82
++ P R L+VGNL +N+ +L D F + G + Q GRS + ++A+
Sbjct: 174 DSEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAM 233
Query: 83 ASMKALQGFPLAGNPLRIEFAK 104
+++ L G L + +
Sbjct: 234 HAIQMLHNTDFMGRTLEVRLDR 255
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 398 GENIEIVFAK 407
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGRS--YAFINFKIEEDAIASMKAL 88
SR ++VGNL +I E + D F ++G + + + P R YAF+ F DA ++
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 89 QGFPLAGNPLRIEFA 103
G+ G+ LR+E A
Sbjct: 66 DGYDFDGHRLRVELA 80
>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3
Length = 255
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-----YAFINFKIEEDAIASMKALQ 89
L V NL + +A++ + F FG L+ A RS A ++F+ + DA+ +MK
Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 166
Query: 90 GFPLAGNPLRIEFAKA 105
G PL G P+ I+ +
Sbjct: 167 GVPLDGRPMNIQLVTS 182
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFKIEEDAIASMKAL 88
L V N+S EE L D F RFG + V R +AFI+F EDA+ + +
Sbjct: 225 LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKM 284
Query: 89 QGFPLAGNPLRIEFAK 104
G+ LR+EFAK
Sbjct: 285 DGWGFKHLILRVEFAK 300
>sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1
Length = 257
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-----YAFINFKIEEDAIASMKALQ 89
L V NL + +A++ + F FG L+ A RS A ++F+ + DA+ +MK
Sbjct: 108 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 167
Query: 90 GFPLAGNPLRIEFAKA 105
G PL G P+ I+ +
Sbjct: 168 GVPLDGRPMNIQLVTS 183
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ 89
P + ++VG L E L F FG + +V G++ F+ F+ DA AS++ LQ
Sbjct: 357 PTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQ 416
Query: 90 GFPLAGNPLRIEFAK 104
GF + G+P+R+ + +
Sbjct: 417 GFIVGGSPIRLSWGR 431
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 307
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 308 GENIEIVFAK 317
>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3
Length = 257
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-----YAFINFKIEEDAIASMKALQ 89
L V NL + +A++ + F FG L+ A RS A ++F+ + DA+ +MK
Sbjct: 108 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 167
Query: 90 GFPLAGNPLRIEFAKA 105
G PL G P+ I+ +
Sbjct: 168 GVPLDGRPMNIQLVTS 183
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFK 76
GGG+ L V N+S EE L D F RFG + V R +AFI+F+
Sbjct: 198 GGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQ 257
Query: 77 IEEDAIASMKALQGFPLAGNPLRIEFAK 104
DA + + + G+ LR+EFAK
Sbjct: 258 ERSDAAKACEKMDGYGFKHLILRVEFAK 285
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 23 GGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFK 76
GGG+ L V N+S EE L D F RFG + V R +AFI+F+
Sbjct: 198 GGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQ 257
Query: 77 IEEDAIASMKALQGFPLAGNPLRIEFAK 104
DA + + + G+ LR+EFAK
Sbjct: 258 ERSDAAKACEKMDGYGFKHLILRVEFAK 285
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-----AFINF 75
+RHLWVGNL N+ E + + F R+G +ESV P R AF++F
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDF 53
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIAS 84
G + P+ +W+ LS N+ + LT F R+G + V F + A + + E A A+
Sbjct: 509 GFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAA 568
Query: 85 MKALQGFPLAGNPLRIEFA 103
+K +G + GN ++++FA
Sbjct: 569 VKETKGRKIGGNKIKVDFA 587
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR---SYAFINFKIEEDAIASMKAL 88
+R L++GNL +L + F RFGE+ + + YAF+ + ++K +
Sbjct: 437 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 496
Query: 89 QGFPLAGNPLRIEFAKA 105
G L N L++ F K+
Sbjct: 497 DGEYLGNNRLKLGFGKS 513
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
L+V NL++ + E L F +FG+LE V + + YAFI+F + A+ +M+ + G L
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERV--KKLKDYAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 95 GNPLRIEFAK 104
G + I FAK
Sbjct: 398 GENIEIVFAK 407
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMKAL 88
L+VG L+ N +E L D F FG + V Q R + FI F E A +M+A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 89 QGFPLAGNPLRIEFA 103
G L G +R++ A
Sbjct: 68 NGESLDGRQIRVDHA 82
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA 94
++VG LS + E L F FGE+ V PG+ F+ F + A ++ LQG+PL
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 95 GNPLRIEFAK 104
+ +R+ + +
Sbjct: 365 NSRIRLSWGR 374
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 21 SGGGGRANT---PPSRHLWVGNLSHNIEEANLTDQFL-RFGELESVAFQP------GRSY 70
SGGG R + ++VG+LS N+ E ++ F R+ +S R Y
Sbjct: 171 SGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGY 230
Query: 71 AFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103
F+ F E D +++ +QG P+R+ A
Sbjct: 231 GFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 28 NTP--PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAF-------QPGRSYAFINFKIE 78
+TP PS L++GNLS N + + + F + GE+ SV QP + + ++ F
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQP-KGFGYVQFSNM 318
Query: 79 EDAIASMKALQGFPLAGNPLRIEFA 103
EDA ++ ALQG + P+R++F+
Sbjct: 319 EDAKKALDALQGEYIDNRPVRLDFS 343
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGEL--ESVAFQPG----RSYAFINFKIEEDAIASMKAL 88
++VG LS +I++ L +F G + V ++ G R Y +++F+ + A +++ +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 89 QGFPLAGNPLRIEFA 103
QG + G P+ + +
Sbjct: 230 QGKEIDGRPINCDMS 244
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFKIEEDAIASMKAL 88
L V N+S EE L D F RFG + V R +AFI++ +DA+ + +
Sbjct: 225 LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISYADRDDAVKACNKM 284
Query: 89 QGFPLAGNPLRIEFAK 104
GF LR+EFAK
Sbjct: 285 DGFGFRHLILRVEFAK 300
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFKIEEDAIASMKAL 88
L V N+S EE L D F RFG + V R +AFI+F DA+ + +
Sbjct: 219 LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADRSDAVKACAKM 278
Query: 89 QGFPLAGNPLRIEFAK 104
GF LR+EFAK
Sbjct: 279 DGFGFRHLILRVEFAK 294
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFKIEEDAIASMKAL 88
++VGNLS+++ EA+LT F +G ++ V R + F+ + + + A+++AL
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62
Query: 89 QGFPLAGNPLRIEFAK 104
G G L++ AK
Sbjct: 63 DGAEWMGRDLKVNKAK 78
>sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=TIF35 PE=3 SV=2
Length = 281
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS------YAFINFKI 77
GG+ + S L V N+S EE +L D F R+G + V R +AF+++
Sbjct: 193 GGKFDRDDSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRETGRAKGFAFVSYAD 252
Query: 78 EEDAIASMKALQGFPLAGNPLRIEFAK 104
DA + + + GF LR+EFAK
Sbjct: 253 RTDAAKACEKMDGFGFGHLILRVEFAK 279
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 24 GGRANTPPSRHLWVGNLSHNIEEANLT---DQFLRFGELESVAFQPGRSYAFINFKIEED 80
G+ PP+ L++ NL H L +Q+ F E+ + +PG AF+ ++ +
Sbjct: 149 SGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG--IAFVEYEDDVQ 206
Query: 81 AIASMKALQGFPLAG-NPLRIEFAK 104
A +M+ LQGF + NP+ I FAK
Sbjct: 207 ASIAMQPLQGFKITPQNPMVISFAK 231
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 27 ANTPPSRHLWVGNLSHNIEEANLT-------DQFLRFGELESVAFQPGRSYAFINFKIEE 79
A+ PP++ +++ NL+ I++ L QF R ++ ++ R A++ F
Sbjct: 4 ADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVT 63
Query: 80 DAIASMKALQGFPLAGNPLRIEFAKA 105
A +++ +Q FP P+R+++AKA
Sbjct: 64 AAGHAVRQMQNFPFYDKPMRLQYAKA 89
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 35 LWVGNLSHNIEEANLTDQFLRFGELESVAFQP---GRSYAFINFKIEEDAIASMKALQGF 91
++VGNL +I ++ D F ++G + + + G +AF+ F+ DA ++ A G+
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 92 PLAGNPLRIEFAKA 105
G LR+EF ++
Sbjct: 77 DYDGYRLRVEFPRS 90
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAF------QPGRSYAFINFKIEEDAIASMK 86
R ++VG L+ + E L + F+ FG++ + Q R +AFI ++ EDA A++
Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65
Query: 87 ALQGFPLAGNPLRIEFAK 104
+ L G +R+ AK
Sbjct: 66 NMNDSELCGRTIRVNLAK 83
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKA 87
N P + ++VG L N+ + L F +FGEL V PG+ F+ + + A ++
Sbjct: 255 NDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSV 314
Query: 88 LQGFPLAGNPLRIEFAKA 105
L G L G +R+ + ++
Sbjct: 315 LNGTQLGGQSIRLSWGRS 332
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 31 PSRHLWVGNLSHNIEEANLTDQFLR-FGELESVAF----QPGRS--YAFINFKIEEDAIA 83
P ++VG+L+ + + L+D F +G ++ GRS Y F+ F E + +
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMR 211
Query: 84 SMKALQGFPLAGNPLRI 100
+M + G + P+RI
Sbjct: 212 AMTEMNGQYCSTRPMRI 228
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
R ++VGN + +++L F ++G ++ V + G YAF+ F+ E DA +++ L FP
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG--YAFVYFEDERDAEDAIRKLDNFP 59
Query: 93 LAGNPLR--IEFAK 104
R +E+AK
Sbjct: 60 FGYEKRRLSVEWAK 73
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 27 ANTPPSRHLWVGNLSH-NIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASM 85
+N P++ L+V N +E ++ F +G++ +V + R+++F+ F+ +EDA ++
Sbjct: 87 SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR--RNFSFVQFETQEDATKAL 144
Query: 86 KALQGFPLAGNPLRIEFA 103
+A Q + + +E+A
Sbjct: 145 EATQRSKILDRVVSVEYA 162
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 35 LWVGNLSHNIEEANLTDQF--LRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP 92
L+V NL + E + +F ++ G +E V + R YAF++F EDA+ +MKAL G
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKV 290
Query: 93 LAGNPLRIEFAK 104
L G+P+ + AK
Sbjct: 291 LDGSPIEVTLAK 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,685,011
Number of Sequences: 539616
Number of extensions: 1739330
Number of successful extensions: 5989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 396
Number of HSP's that attempted gapping in prelim test: 5233
Number of HSP's gapped (non-prelim): 1023
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)