Query 036554
Match_columns 105
No_of_seqs 122 out of 1420
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r27_A HnRNP L, heterogeneous 99.9 8.8E-24 3E-28 117.4 10.9 84 22-105 11-96 (100)
2 4fxv_A ELAV-like protein 1; RN 99.9 6.4E-24 2.2E-28 118.2 9.8 75 31-105 18-98 (99)
3 1wex_A Hypothetical protein (r 99.9 5.2E-23 1.8E-27 115.4 11.8 81 25-105 8-90 (104)
4 1x4d_A Matrin 3; structural ge 99.9 2.7E-23 9.3E-28 116.1 9.9 77 29-105 12-91 (102)
5 2cq1_A PTB-like protein L; RRM 99.9 1.4E-22 4.8E-27 113.1 12.6 80 26-105 9-90 (101)
6 1sjq_A Polypyrimidine tract-bi 99.9 2.3E-23 8E-28 116.7 9.2 77 29-105 13-91 (105)
7 1why_A Hypothetical protein ri 99.9 1.9E-22 6.6E-27 111.6 12.5 77 29-105 14-92 (97)
8 2ytc_A PRE-mRNA-splicing facto 99.9 5.4E-23 1.9E-27 111.2 10.0 79 26-104 6-85 (85)
9 2cpj_A Non-POU domain-containi 99.9 1.9E-22 6.5E-27 112.0 11.5 78 28-105 11-88 (99)
10 2ad9_A Polypyrimidine tract-bi 99.9 1.2E-22 4.1E-27 116.2 10.6 80 26-105 25-106 (119)
11 2cq3_A RNA-binding protein 9; 99.9 6.8E-22 2.3E-26 110.4 13.1 79 27-105 10-92 (103)
12 1x4c_A Splicing factor, argini 99.9 4.6E-22 1.6E-26 112.1 12.0 77 28-105 11-92 (108)
13 2e5h_A Zinc finger CCHC-type a 99.9 4.3E-22 1.5E-26 109.5 11.6 79 26-104 10-94 (94)
14 2cqi_A Nucleolysin TIAR; RNA r 99.9 7.1E-22 2.4E-26 110.4 12.1 80 26-105 9-92 (103)
15 2cph_A RNA binding motif prote 99.9 7.4E-22 2.5E-26 110.9 12.0 80 26-105 9-96 (107)
16 1x4a_A Splicing factor, argini 99.9 1.3E-21 4.5E-26 110.3 13.1 79 27-105 17-98 (109)
17 1x5s_A Cold-inducible RNA-bind 99.9 3.8E-22 1.3E-26 111.2 10.7 80 26-105 6-91 (102)
18 2d9p_A Polyadenylate-binding p 99.9 6.1E-22 2.1E-26 110.6 11.3 79 27-105 10-92 (103)
19 2cqc_A Arginine/serine-rich sp 99.9 6.2E-22 2.1E-26 109.0 10.8 80 26-105 9-94 (95)
20 2wbr_A GW182, gawky, LD47780P; 99.9 3E-22 1E-26 108.3 9.2 73 32-104 7-79 (89)
21 1x4f_A Matrin 3; structural ge 99.9 4.9E-22 1.7E-26 112.5 10.1 77 29-105 22-101 (112)
22 2dgx_A KIAA0430 protein; RRM d 99.9 6.9E-22 2.3E-26 109.3 10.5 77 29-105 6-89 (96)
23 3s8s_A Histone-lysine N-methyl 99.9 5.8E-22 2E-26 112.2 10.4 76 29-104 3-84 (110)
24 2la4_A Nuclear and cytoplasmic 99.9 3.3E-22 1.1E-26 111.4 9.2 76 30-105 25-100 (101)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.2E-22 1.4E-26 111.0 9.6 79 27-105 7-91 (102)
26 3ulh_A THO complex subunit 4; 99.9 7.4E-22 2.5E-26 110.9 10.4 81 25-105 22-107 (107)
27 2cq0_A Eukaryotic translation 99.9 1.1E-21 3.7E-26 109.6 10.8 79 27-105 10-94 (103)
28 2dnq_A RNA-binding protein 4B; 99.9 1.6E-21 5.3E-26 106.6 11.2 75 29-105 5-79 (90)
29 1whx_A Hypothetical protein ri 99.9 3.4E-22 1.2E-26 113.3 8.6 74 31-104 9-82 (111)
30 2dgo_A Cytotoxic granule-assoc 99.9 1.7E-21 5.9E-26 110.7 11.6 80 26-105 9-94 (115)
31 1x5u_A Splicing factor 3B subu 99.9 1.7E-21 5.9E-26 109.1 11.4 79 27-105 10-94 (105)
32 2dgs_A DAZ-associated protein 99.9 2.5E-21 8.7E-26 107.4 12.0 77 28-105 6-88 (99)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.1E-21 3.7E-26 106.0 10.0 76 29-104 4-85 (85)
34 1x4g_A Nucleolysin TIAR; struc 99.9 1.1E-21 3.7E-26 110.7 10.4 77 29-105 22-98 (109)
35 2do4_A Squamous cell carcinoma 99.9 3.2E-21 1.1E-25 107.2 12.2 77 29-105 14-95 (100)
36 2kt5_A RNA and export factor-b 99.9 7.9E-21 2.7E-25 109.3 14.1 82 24-105 27-113 (124)
37 2dnm_A SRP46 splicing factor; 99.9 1.2E-21 4.1E-26 109.4 10.3 80 26-105 7-92 (103)
38 4f25_A Polyadenylate-binding p 99.9 8.1E-22 2.8E-26 112.3 9.7 74 32-105 5-82 (115)
39 2do0_A HnRNP M, heterogeneous 99.9 2.9E-21 1E-25 109.6 11.9 79 26-104 9-92 (114)
40 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.2E-21 4E-26 106.3 9.7 77 29-105 3-85 (87)
41 2ywk_A Putative RNA-binding pr 99.9 9.5E-22 3.3E-26 108.3 9.5 80 26-105 10-94 (95)
42 3md1_A Nuclear and cytoplasmic 99.9 1.5E-21 5.2E-26 105.0 10.0 74 32-105 1-80 (83)
43 2dgt_A RNA-binding protein 30; 99.9 2.6E-21 8.9E-26 106.1 11.1 77 27-105 5-81 (92)
44 2khc_A Testis-specific RNP-typ 99.9 3.8E-21 1.3E-25 109.7 12.2 79 26-104 34-118 (118)
45 1x4h_A RNA-binding protein 28; 99.9 3.2E-21 1.1E-25 108.9 11.5 78 28-105 11-100 (111)
46 2dgu_A Heterogeneous nuclear r 99.9 1.9E-21 6.6E-26 108.6 10.5 75 29-105 8-82 (103)
47 2dnz_A Probable RNA-binding pr 99.9 4.1E-21 1.4E-25 105.7 11.5 76 30-105 3-84 (95)
48 2dnh_A Bruno-like 5, RNA bindi 99.9 5.3E-21 1.8E-25 107.1 12.0 77 29-105 12-96 (105)
49 2x1f_A MRNA 3'-END-processing 99.9 2.6E-21 8.9E-26 106.8 10.5 75 31-105 1-81 (96)
50 2dgv_A HnRNP M, heterogeneous 99.9 1.5E-21 5.3E-26 106.9 9.4 77 29-105 5-85 (92)
51 2e5j_A Methenyltetrahydrofolat 99.9 8.1E-21 2.8E-25 105.1 12.4 77 28-105 15-93 (97)
52 2cpz_A CUG triplet repeat RNA- 99.9 6.1E-21 2.1E-25 108.5 11.9 79 27-105 20-104 (115)
53 2kxn_B Transformer-2 protein h 99.9 2.3E-21 7.8E-26 112.5 10.3 80 26-105 40-125 (129)
54 1whw_A Hypothetical protein ri 99.9 4.8E-21 1.6E-25 106.2 10.8 77 29-105 5-87 (99)
55 2dnp_A RNA-binding protein 14; 99.9 3.9E-21 1.4E-25 105.0 10.3 76 28-105 5-80 (90)
56 2cpf_A RNA binding motif prote 99.9 1.9E-21 6.4E-26 107.7 9.2 76 30-105 3-87 (98)
57 2dgp_A Bruno-like 4, RNA bindi 99.9 4.9E-21 1.7E-25 107.4 10.7 79 27-105 8-95 (106)
58 2cpd_A Apobec-1 stimulating pr 99.9 1.1E-20 3.8E-25 104.8 12.0 77 27-105 10-88 (99)
59 1nu4_A U1A RNA binding domain; 99.9 2.5E-21 8.4E-26 107.0 9.1 78 28-105 4-88 (97)
60 2div_A TRNA selenocysteine ass 99.9 2.8E-21 9.7E-26 107.1 9.3 77 29-105 6-93 (99)
61 2xnq_A Nuclear polyadenylated 99.9 7.4E-21 2.5E-25 105.3 10.9 77 27-105 17-94 (97)
62 1p27_B RNA-binding protein 8A; 99.9 4.1E-21 1.4E-25 107.7 10.0 78 28-105 19-102 (106)
63 2jvo_A Nucleolar protein 3; nu 99.9 4.3E-21 1.5E-25 108.2 10.1 77 27-105 26-102 (108)
64 2cpe_A RNA-binding protein EWS 99.9 6.9E-21 2.4E-25 107.9 10.8 78 28-105 11-102 (113)
65 2la6_A RNA-binding protein FUS 99.9 1E-20 3.5E-25 105.0 11.2 79 26-104 7-99 (99)
66 2err_A Ataxin-2-binding protei 99.9 4E-21 1.4E-25 108.5 9.7 79 27-105 24-106 (109)
67 2cq2_A Hypothetical protein LO 99.9 2.6E-21 8.7E-26 109.8 8.8 78 27-104 20-104 (114)
68 4a8x_A RNA-binding protein wit 99.9 5.5E-21 1.9E-25 103.8 9.9 75 31-105 3-84 (88)
69 1x5p_A Negative elongation fac 99.9 1.6E-20 5.3E-25 103.9 11.8 75 29-105 12-86 (97)
70 1oo0_B CG8781-PA, drosophila Y 99.9 5.1E-21 1.7E-25 108.0 10.1 79 27-105 21-105 (110)
71 3ex7_B RNA-binding protein 8A; 99.9 4.4E-21 1.5E-25 110.6 10.0 78 27-104 17-100 (126)
72 2a3j_A U1 small nuclear ribonu 99.9 5.8E-21 2E-25 110.5 10.4 79 27-105 24-109 (127)
73 2jrs_A RNA-binding protein 39; 99.9 5.9E-21 2E-25 107.6 10.1 80 26-105 20-105 (108)
74 2fy1_A RNA-binding motif prote 99.9 7.8E-21 2.7E-25 108.4 10.7 77 29-105 4-85 (116)
75 1wi8_A EIF-4B, eukaryotic tran 99.9 1.1E-20 3.7E-25 105.7 11.1 76 28-105 11-93 (104)
76 1wf1_A RNA-binding protein RAL 99.9 1.4E-20 4.9E-25 106.2 11.7 75 28-104 23-98 (110)
77 2lxi_A RNA-binding protein 10; 99.9 5.9E-22 2E-26 108.7 5.6 74 32-105 1-82 (91)
78 1x5t_A Splicing factor 3B subu 99.9 3E-21 1E-25 106.5 8.5 76 30-105 3-85 (96)
79 2cqd_A RNA-binding region cont 99.9 1.2E-20 4.2E-25 107.4 11.2 77 27-104 12-94 (116)
80 2e5i_A Heterogeneous nuclear r 99.9 4E-20 1.4E-24 106.4 13.3 73 33-105 26-101 (124)
81 2kvi_A Nuclear polyadenylated 99.9 5.6E-21 1.9E-25 105.5 9.2 76 28-105 6-82 (96)
82 2cpi_A CCR4-NOT transcription 99.9 5.7E-21 2E-25 108.1 9.3 77 29-105 12-100 (111)
83 2lkz_A RNA-binding protein 5; 99.9 5.3E-21 1.8E-25 105.6 8.8 74 32-105 9-94 (95)
84 2dhg_A TRNA selenocysteine ass 99.9 5.2E-21 1.8E-25 106.9 8.9 78 28-105 5-89 (104)
85 2dng_A Eukaryotic translation 99.9 1.6E-20 5.4E-25 104.9 10.8 78 26-105 9-92 (103)
86 2cqh_A IGF-II mRNA-binding pro 99.9 2.5E-21 8.5E-26 106.3 7.3 76 29-105 5-82 (93)
87 2jvr_A Nucleolar protein 3; RN 99.9 5.1E-21 1.8E-25 108.4 8.7 77 28-104 24-103 (111)
88 3lqv_A PRE-mRNA branch site pr 99.9 1.4E-20 4.8E-25 106.9 10.6 77 29-105 5-84 (115)
89 2i2y_A Fusion protein consists 99.8 1.8E-20 6.1E-25 111.0 11.0 79 27-105 68-147 (150)
90 2dis_A Unnamed protein product 99.8 8.3E-21 2.8E-25 106.9 9.1 77 29-105 5-91 (109)
91 3ns6_A Eukaryotic translation 99.8 3.5E-21 1.2E-25 107.2 7.2 75 31-105 5-92 (100)
92 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.6E-20 8.9E-25 108.9 11.3 79 25-103 56-140 (140)
93 2hvz_A Splicing factor, argini 99.8 7.6E-21 2.6E-25 105.8 8.3 73 33-105 1-74 (101)
94 1p1t_A Cleavage stimulation fa 99.8 2.7E-21 9.3E-26 108.0 6.5 77 29-105 5-87 (104)
95 2cqp_A RNA-binding protein 12; 99.8 9.3E-21 3.2E-25 104.9 8.3 77 29-105 12-94 (98)
96 2lea_A Serine/arginine-rich sp 99.8 4.7E-21 1.6E-25 111.9 7.1 80 26-105 41-126 (135)
97 2dh8_A DAZ-associated protein 99.8 1E-20 3.4E-25 106.0 8.2 78 27-105 11-94 (105)
98 2fc9_A NCL protein; structure 99.8 3.8E-20 1.3E-24 102.9 10.4 79 27-105 10-90 (101)
99 1x5o_A RNA binding motif, sing 99.8 1.3E-19 4.3E-24 102.8 12.7 78 28-105 21-111 (114)
100 3u1l_A PRE-mRNA-splicing facto 99.8 1.6E-20 5.4E-25 118.6 9.8 81 25-105 127-228 (240)
101 1u6f_A Tcubp1, RNA-binding pro 99.8 3.2E-20 1.1E-24 108.6 10.5 79 27-105 37-121 (139)
102 3p5t_L Cleavage and polyadenyl 99.8 3.3E-21 1.1E-25 105.3 5.7 73 33-105 2-82 (90)
103 1s79_A Lupus LA protein; RRM, 99.8 1.8E-20 6.3E-25 104.8 8.8 75 29-104 8-87 (103)
104 1wg1_A KIAA1579 protein, homol 99.8 1.6E-20 5.6E-25 102.2 8.3 73 31-104 4-76 (88)
105 2ek1_A RNA-binding protein 12; 99.8 5.6E-21 1.9E-25 105.2 6.6 77 29-105 12-94 (95)
106 2dgw_A Probable RNA-binding pr 99.8 4.4E-20 1.5E-24 100.9 9.9 76 28-105 6-86 (91)
107 1x4e_A RNA binding motif, sing 99.8 5.1E-21 1.7E-25 103.4 6.1 76 29-104 2-83 (85)
108 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.8E-20 1.3E-24 110.2 10.4 78 28-105 35-118 (156)
109 2cpx_A Hypothetical protein FL 99.8 9.8E-20 3.3E-24 103.4 11.6 78 28-105 21-104 (115)
110 2f3j_A RNA and export factor b 99.8 1.5E-19 5.1E-24 109.9 13.1 77 29-105 85-166 (177)
111 3ucg_A Polyadenylate-binding p 99.8 2.6E-20 9.1E-25 101.3 8.8 74 31-105 5-84 (89)
112 2e44_A Insulin-like growth fac 99.8 6.7E-20 2.3E-24 101.0 10.5 77 29-105 12-91 (96)
113 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.7E-20 1.3E-24 111.3 10.0 77 28-104 68-150 (165)
114 3zzy_A Polypyrimidine tract-bi 99.8 6.9E-20 2.4E-24 106.0 10.6 75 31-105 27-105 (130)
115 2fc8_A NCL protein; structure 99.8 5.6E-20 1.9E-24 102.4 9.7 79 27-105 10-91 (102)
116 2m2b_A RNA-binding protein 10; 99.8 2E-20 6.7E-25 108.7 8.0 78 27-105 18-107 (131)
117 2cq4_A RNA binding motif prote 99.8 2E-20 7E-25 106.1 7.7 74 30-104 23-102 (114)
118 2nlw_A Eukaryotic translation 99.8 3.9E-20 1.3E-24 103.7 8.7 75 30-104 13-98 (105)
119 3n9u_C Cleavage and polyadenyl 99.8 3E-20 1E-24 110.9 8.7 74 31-104 54-135 (156)
120 2bz2_A Negative elongation fac 99.8 8.1E-20 2.8E-24 104.9 9.9 76 28-105 35-110 (121)
121 3s7r_A Heterogeneous nuclear r 99.8 7.7E-20 2.6E-24 99.1 9.3 75 28-103 7-87 (87)
122 1wg5_A Heterogeneous nuclear r 99.8 1.4E-19 4.9E-24 101.2 10.5 76 28-104 11-92 (104)
123 3beg_B Splicing factor, argini 99.8 4.8E-20 1.6E-24 104.9 8.6 74 30-104 14-92 (115)
124 2cqg_A TDP-43, TAR DNA-binding 99.8 2.1E-19 7.3E-24 100.2 11.1 78 26-105 9-92 (103)
125 2cpy_A RNA-binding protein 12; 99.8 3.9E-20 1.3E-24 105.1 8.2 76 28-104 11-92 (114)
126 1sjr_A Polypyrimidine tract-bi 99.8 1.3E-19 4.5E-24 108.4 10.4 74 32-105 46-123 (164)
127 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-19 6.2E-24 107.3 10.7 78 28-105 66-149 (158)
128 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.7E-20 1.3E-24 103.0 7.0 76 28-105 15-97 (100)
129 1wel_A RNA-binding protein 12; 99.8 3.7E-20 1.3E-24 106.6 6.6 76 28-104 21-102 (124)
130 3tyt_A Heterogeneous nuclear r 99.8 2.3E-19 8E-24 111.2 10.6 75 30-104 2-78 (205)
131 2hzc_A Splicing factor U2AF 65 99.8 1.4E-19 4.9E-24 98.0 8.5 73 29-102 3-86 (87)
132 1x4b_A Heterogeneous nuclear r 99.8 1.4E-19 4.7E-24 103.0 8.8 75 30-105 25-105 (116)
133 2db1_A Heterogeneous nuclear r 99.8 8.6E-20 3E-24 104.3 7.8 75 29-104 14-96 (118)
134 1wez_A HnRNP H', FTP-3, hetero 99.8 1.5E-19 5.2E-24 100.9 8.6 76 27-104 10-90 (102)
135 2hgl_A HNRPF protein, heteroge 99.8 5.7E-20 1.9E-24 107.4 7.0 77 27-104 39-123 (136)
136 2jwn_A Embryonic polyadenylate 99.8 1.2E-19 4.1E-24 104.3 7.7 73 32-105 36-114 (124)
137 2diu_A KIAA0430 protein; struc 99.8 5.5E-19 1.9E-23 96.4 9.9 73 29-105 5-83 (96)
138 1fj7_A Nucleolin RBD1, protein 99.8 6.6E-19 2.3E-23 97.9 10.5 76 29-105 14-94 (101)
139 2mss_A Protein (musashi1); RNA 99.8 1.1E-19 3.6E-24 96.1 6.9 69 34-103 1-75 (75)
140 3egn_A RNA-binding protein 40; 99.8 1.9E-19 6.6E-24 105.8 8.4 77 29-105 42-129 (143)
141 1fjc_A Nucleolin RBD2, protein 99.8 9.8E-20 3.3E-24 100.4 6.6 77 28-105 12-90 (96)
142 2rs2_A Musashi-1, RNA-binding 99.8 2.8E-19 9.6E-24 100.9 8.6 76 29-105 22-103 (109)
143 2e5g_A U6 snRNA-specific termi 99.8 5.1E-19 1.7E-23 97.2 9.2 74 30-104 6-80 (94)
144 2krb_A Eukaryotic translation 99.8 1.1E-19 3.6E-24 97.5 6.2 69 33-101 2-81 (81)
145 2ki2_A SS-DNA binding protein 99.8 3.7E-20 1.3E-24 101.0 4.2 72 33-105 2-79 (90)
146 3q2s_C Cleavage and polyadenyl 99.8 1.3E-19 4.4E-24 114.0 6.8 74 31-104 67-148 (229)
147 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.8E-19 6.1E-24 95.5 6.0 70 33-103 1-76 (77)
148 3d2w_A TAR DNA-binding protein 99.8 1.3E-18 4.5E-23 94.9 9.6 74 28-105 7-83 (89)
149 3md3_A Nuclear and cytoplasmic 99.8 2.2E-18 7.5E-23 102.5 11.4 78 28-105 83-166 (166)
150 2dnn_A RNA-binding protein 12; 99.8 7.7E-19 2.6E-23 99.1 8.8 74 29-104 13-91 (109)
151 2lmi_A GRSF-1, G-rich sequence 99.8 2.4E-19 8E-24 100.8 6.4 75 29-104 8-90 (107)
152 3pgw_S U1-70K; protein-RNA com 99.8 1.3E-18 4.5E-23 118.1 10.7 77 29-105 99-181 (437)
153 4f02_A Polyadenylate-binding p 99.8 1.3E-18 4.6E-23 108.1 9.9 76 29-104 12-93 (213)
154 1fxl_A Paraneoplastic encephal 99.8 2.7E-18 9.3E-23 102.2 10.6 74 32-105 2-81 (167)
155 3pgw_A U1-A; protein-RNA compl 99.8 2.6E-18 8.9E-23 110.4 11.1 77 29-105 204-282 (282)
156 4f02_A Polyadenylate-binding p 99.8 1.8E-18 6.3E-23 107.4 9.8 74 32-105 103-180 (213)
157 2adc_A Polypyrimidine tract-bi 99.8 2.7E-18 9.3E-23 107.7 10.1 78 27-104 29-108 (229)
158 2qfj_A FBP-interacting repress 99.8 4.3E-18 1.5E-22 105.3 10.5 75 31-105 124-204 (216)
159 2hgm_A HNRPF protein, heteroge 99.8 1.2E-18 4.1E-23 100.5 7.3 76 27-104 37-119 (126)
160 3sde_A Paraspeckle component 1 99.8 5.7E-18 2E-22 108.1 11.0 77 29-105 19-95 (261)
161 1b7f_A Protein (SXL-lethal pro 99.8 4.2E-18 1.4E-22 101.7 9.7 75 31-105 2-82 (168)
162 2lcw_A RNA-binding protein FUS 99.6 2.6E-20 8.8E-25 106.0 0.0 77 29-105 4-94 (116)
163 2hgn_A Heterogeneous nuclear r 99.8 3E-19 1E-23 104.7 4.5 75 28-104 42-121 (139)
164 3pgw_A U1-A; protein-RNA compl 99.8 7.2E-18 2.5E-22 108.3 11.1 77 28-104 5-88 (282)
165 1qm9_A Polypyrimidine tract-bi 99.8 1.2E-17 4.2E-22 102.3 11.6 77 29-105 117-196 (198)
166 2yh0_A Splicing factor U2AF 65 99.8 1E-17 3.5E-22 102.4 11.1 77 29-105 111-193 (198)
167 2adc_A Polypyrimidine tract-bi 99.8 1.5E-17 5E-22 104.4 12.0 77 29-105 148-227 (229)
168 1wf0_A TDP-43, TAR DNA-binding 99.8 1E-18 3.5E-23 94.9 5.7 72 30-105 3-77 (88)
169 1iqt_A AUF1, heterogeneous nuc 99.8 1.2E-18 4.1E-23 91.9 5.0 69 34-103 1-75 (75)
170 2xs2_A Deleted in azoospermia- 99.7 8.5E-19 2.9E-23 97.6 4.3 74 29-104 6-84 (102)
171 2dit_A HIV TAT specific factor 99.7 3.9E-17 1.3E-21 92.4 11.2 78 28-105 11-101 (112)
172 2g4b_A Splicing factor U2AF 65 99.7 1.5E-17 5E-22 99.7 9.6 74 30-103 92-171 (172)
173 3md3_A Nuclear and cytoplasmic 99.7 1.4E-17 4.8E-22 99.0 9.3 72 33-104 1-77 (166)
174 1l3k_A Heterogeneous nuclear r 99.7 2.5E-17 8.4E-22 100.5 9.5 76 28-104 9-90 (196)
175 1b7f_A Protein (SXL-lethal pro 99.7 7.9E-17 2.7E-21 96.1 11.4 75 29-103 86-168 (168)
176 2g4b_A Splicing factor U2AF 65 99.7 2.2E-17 7.6E-22 98.9 8.8 73 31-104 3-86 (172)
177 2cjk_A Nuclear polyadenylated 99.7 1.1E-17 3.9E-22 99.8 7.5 74 31-105 86-165 (167)
178 3nmr_A Cugbp ELAV-like family 99.7 4.3E-17 1.5E-21 97.7 10.0 75 30-104 93-175 (175)
179 1fje_B Nucleolin RBD12, protei 99.7 3E-17 1E-21 98.7 9.0 76 29-105 96-173 (175)
180 1qm9_A Polypyrimidine tract-bi 99.7 2.2E-17 7.5E-22 101.2 8.3 73 32-104 3-77 (198)
181 2qfj_A FBP-interacting repress 99.7 6.6E-17 2.2E-21 100.0 10.2 74 31-104 27-106 (216)
182 2dha_A FLJ20171 protein; RRM d 99.7 5.2E-18 1.8E-22 97.6 4.7 74 30-104 21-103 (123)
183 2pe8_A Splicing factor 45; RRM 99.7 9.6E-17 3.3E-21 89.9 9.7 75 30-104 6-92 (105)
184 3nmr_A Cugbp ELAV-like family 99.7 5.2E-17 1.8E-21 97.4 9.2 74 31-104 2-86 (175)
185 3tht_A Alkylated DNA repair pr 99.7 5.4E-17 1.8E-21 107.1 10.0 81 24-104 10-97 (345)
186 2dnl_A Cytoplasmic polyadenyla 99.7 4.8E-17 1.6E-21 92.3 8.2 68 30-100 6-82 (114)
187 2yh0_A Splicing factor U2AF 65 99.7 3.7E-17 1.3E-21 99.9 8.2 73 31-104 3-86 (198)
188 1l3k_A Heterogeneous nuclear r 99.7 7.7E-17 2.6E-21 98.3 9.2 75 30-105 102-182 (196)
189 3smz_A Protein raver-1, ribonu 99.7 1.9E-16 6.4E-21 101.8 11.0 73 31-104 21-93 (284)
190 1fxl_A Paraneoplastic encephal 99.7 1.5E-16 5.1E-21 94.6 9.8 74 30-103 86-167 (167)
191 2voo_A Lupus LA protein; RNA-b 99.7 8.3E-17 2.8E-21 98.9 8.5 72 32-104 109-185 (193)
192 3smz_A Protein raver-1, ribonu 99.7 1.6E-16 5.3E-21 102.2 10.0 77 29-105 181-263 (284)
193 1fje_B Nucleolin RBD12, protei 99.7 2.4E-16 8.3E-21 94.7 9.5 77 28-105 9-90 (175)
194 2ghp_A U4/U6 snRNA-associated 99.7 1.9E-16 6.5E-21 102.1 8.6 76 29-105 207-290 (292)
195 2cjk_A Nuclear polyadenylated 99.7 2.4E-16 8.1E-21 94.0 8.0 72 31-104 2-79 (167)
196 3tyt_A Heterogeneous nuclear r 99.7 2.9E-16 9.8E-21 97.3 8.0 75 29-103 120-204 (205)
197 2j8a_A Histone-lysine N-methyl 99.7 2.2E-16 7.7E-21 90.7 6.1 72 33-104 3-94 (136)
198 2ghp_A U4/U6 snRNA-associated 99.6 1.2E-15 4E-20 98.4 9.5 75 31-105 116-196 (292)
199 3v4m_A Splicing factor U2AF 65 99.6 2.2E-15 7.5E-20 84.4 8.5 75 30-104 3-95 (105)
200 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.9E-14 6.5E-19 79.9 11.4 72 32-105 10-89 (100)
201 3sde_A Paraspeckle component 1 99.6 9.3E-15 3.2E-19 93.2 9.7 74 31-104 95-177 (261)
202 1jmt_A Splicing factor U2AF 35 99.6 1.8E-15 6.3E-20 84.5 4.4 67 37-103 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.6 1.4E-14 4.9E-19 82.6 8.0 75 30-104 18-107 (118)
204 3s6e_A RNA-binding protein 39; 99.6 4E-14 1.4E-18 80.3 9.5 76 29-104 4-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.5 1.3E-12 4.3E-17 74.6 10.5 76 27-102 13-92 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.5 9.5E-13 3.3E-17 71.2 8.5 74 29-105 4-85 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 2.6E-11 8.8E-16 65.9 6.4 75 27-104 10-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 2.7E-10 9.3E-15 70.9 7.7 72 32-103 124-210 (222)
209 2l9w_A U4/U6 snRNA-associated- 99.1 2.2E-09 7.5E-14 59.6 9.3 71 31-101 20-95 (117)
210 1wey_A Calcipressin 1; structu 98.5 6.3E-07 2.1E-11 49.4 6.7 72 33-104 6-82 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.3 5.1E-05 1.7E-09 41.7 11.0 68 31-101 7-79 (104)
212 1whv_A Poly(A)-specific ribonu 98.3 2.6E-05 9E-10 42.4 9.5 56 31-89 15-70 (100)
213 1uw4_A UPF3X; nonsense mediate 98.0 5.7E-05 2E-09 40.8 7.2 62 33-94 2-71 (91)
214 1wwh_A Nucleoporin 35, nucleop 98.0 8E-05 2.7E-09 42.0 7.9 69 31-101 23-92 (119)
215 3ctr_A Poly(A)-specific ribonu 97.8 3.3E-05 1.1E-09 42.2 4.5 55 32-89 6-60 (101)
216 2l08_A Regulator of nonsense t 97.4 0.00049 1.7E-08 37.5 5.1 63 32-94 9-79 (97)
217 3pq1_A Poly(A) RNA polymerase; 97.4 0.00015 5.1E-09 49.8 3.7 54 32-86 53-107 (464)
218 3p3d_A Nucleoporin 53; structu 97.3 0.00025 8.7E-09 40.6 3.5 69 33-103 8-96 (132)
219 2i2y_A Fusion protein consists 96.5 0.0011 3.8E-08 38.4 1.8 38 66-104 11-49 (150)
220 3d45_A Poly(A)-specific ribonu 95.6 0.15 5.3E-06 35.4 9.1 55 32-89 440-494 (507)
221 2kn4_A Immunoglobulin G-bindin 95.0 0.02 7E-07 33.2 3.0 25 66-90 11-35 (158)
222 2g0c_A ATP-dependent RNA helic 92.7 0.49 1.7E-05 23.9 6.3 68 34-104 2-75 (76)
223 4eyt_A Telomerase associated p 61.7 16 0.00056 19.4 8.3 57 31-89 11-67 (129)
224 4a4j_A Pacszia, cation-transpo 60.3 12 0.00041 17.5 5.3 45 33-77 4-48 (69)
225 3fry_A Probable copper-exporti 56.1 16 0.00054 17.5 5.9 54 32-86 6-59 (73)
226 3fut_A Dimethyladenosine trans 50.5 20 0.0007 22.7 3.7 29 33-62 111-139 (271)
227 3uzu_A Ribosomal RNA small sub 50.0 11 0.00038 24.0 2.4 31 33-63 115-145 (279)
228 3tqs_A Ribosomal RNA small sub 38.7 13 0.00045 23.2 1.4 30 34-63 98-127 (255)
229 1qyr_A KSGA, high level kasuga 38.5 31 0.0011 21.5 3.1 23 34-56 92-114 (252)
230 3ftd_A Dimethyladenosine trans 35.2 29 0.001 21.5 2.6 27 33-59 96-122 (249)
231 2xmw_A PACS-N, cation-transpor 30.7 43 0.0015 15.1 5.8 45 33-77 5-49 (71)
232 3ts2_A Protein LIN-28 homolog 30.4 15 0.00052 21.1 0.7 27 48-76 3-29 (148)
233 3dxs_X Copper-transporting ATP 29.9 49 0.0017 15.5 6.7 55 33-87 4-62 (74)
234 2kt2_A Mercuric reductase; nme 28.7 48 0.0016 14.9 5.2 44 34-77 3-46 (69)
235 1i4w_A Mitochondrial replicati 28.1 54 0.0019 21.7 3.1 23 33-55 143-165 (353)
236 4aj5_1 SKA3, spindle and kinet 23.6 32 0.0011 18.6 1.1 11 47-57 91-101 (101)
237 2rd7_A Complement component C8 23.4 61 0.0021 21.5 2.6 25 39-63 195-221 (367)
238 2k2p_A Uncharacterized protein 22.5 82 0.0028 15.6 4.6 55 32-86 23-78 (85)
239 3lpe_A Putative transcription 21.2 85 0.0029 16.2 2.5 32 59-90 40-72 (92)
240 2q2k_A Hypothetical protein; p 20.6 17 0.00058 17.3 -0.3 19 37-55 43-61 (70)
241 3h7h_B Transcription elongatio 20.4 72 0.0025 17.2 2.1 34 59-92 41-75 (106)
No 1
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.91 E-value=8.8e-24 Score=117.40 Aligned_cols=84 Identities=20% Similarity=0.343 Sum_probs=73.7
Q ss_pred CCCCCCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCc--cCCceEE
Q 036554 22 GGGGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFP--LAGNPLR 99 (105)
Q Consensus 22 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~l~ 99 (105)
...+....+|+++|||+|||+.+++++|+.+|.+||.|..+.+++.+++|||+|.+.++|..|++.|++.. +.|++|+
T Consensus 11 ~~~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 11 NYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp ------CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cccccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 34555667788999999999999999999999999999999999999999999999999999999999875 7899999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 91 V~~S~~ 96 (100)
T 3r27_A 91 VNYSTS 96 (100)
T ss_dssp EEECSC
T ss_pred EEeccc
Confidence 999874
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=6.4e-24 Score=118.19 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
.+++|||+|||+++++++|+++|++||.|..+.+.+ .+|+|||+|.+.++|+.|++.||+..+.|+.|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999998863 35799999999999999999999999999999999999
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 3
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=5.2e-23 Score=115.43 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=73.3
Q ss_pred CCCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCceEEEEe
Q 036554 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGF--PLAGNPLRIEF 102 (105)
Q Consensus 25 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~ 102 (105)
.....+++++|||+|||+.+++++|+.+|.+||.|..+.+++.+++|||+|.+.++|+.|++.|++. .+.|++|+|.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3344667899999999999999999999999999999999988999999999999999999988764 58999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 88 a~~ 90 (104)
T 1wex_A 88 STS 90 (104)
T ss_dssp CSS
T ss_pred ccC
Confidence 863
No 4
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=2.7e-23 Score=116.08 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCC-CcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSH-NIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGF--PLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~k~ 105 (105)
..+.++|||+|||+ .+++++|+.+|.+||.|..+.+++.+++|||+|.+.++|+.|++.|++. .+.|++|+|.|+++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 44678999999999 9999999999999999999999988999999999999999999999864 59999999999873
No 5
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.4e-22 Score=113.11 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=73.0
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhc--CCccCCceEEEEec
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ--GFPLAGNPLRIEFA 103 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~ 103 (105)
....+++++|||+|||+.+++++|+.+|.+||.|..+.+++.+++|||+|.+.++|+.|++.|+ +..+.|++|+|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 3445678999999999999999999999999999999999889999999999999999999875 56799999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 89 ~~ 90 (101)
T 2cq1_A 89 NH 90 (101)
T ss_dssp SC
T ss_pred Cc
Confidence 74
No 6
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=2.3e-23 Score=116.66 Aligned_cols=77 Identities=26% Similarity=0.437 Sum_probs=71.6
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG--FPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~k~ 105 (105)
.++.++|||+|||+.+++++|+++|.+||.|..+.+++.+|||||+|.+.++|+.|++.|++ ..+.|++|+|.|+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 45678999999999999999999999999999999999999999999999999999998874 689999999999874
No 7
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=1.9e-22 Score=111.59 Aligned_cols=77 Identities=36% Similarity=0.721 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccC--CceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA--GNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~k~ 105 (105)
.++.++|||+|||+.+++++|+++|.+||.|..+.+.+.+++|||+|.+.++|+.|++.||+..+. |+.|+|.|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 456689999999999999999999999999999999988999999999999999999999999999 99999999875
No 8
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=5.4e-23 Score=111.21 Aligned_cols=79 Identities=23% Similarity=0.487 Sum_probs=73.7
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCceEEEEecc
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKAL-QGFPLAGNPLRIEFAK 104 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~k 104 (105)
++..++.++|||+|||..+++++|+++|.+||.|..+.+.+.+++|||+|.+.++|+.|++.| ++..+.|+.|+|.|+|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 344566789999999999999999999999999999999988999999999999999999998 9999999999999986
No 9
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.9e-22 Score=111.99 Aligned_cols=78 Identities=27% Similarity=0.492 Sum_probs=73.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..++.++|||+|||+.+++++|+.+|.+||.|..+.+.+.+++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999999874
No 10
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.2e-22 Score=116.19 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=73.3
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCceEEEEec
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG--FPLAGNPLRIEFA 103 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~ 103 (105)
....+++++|||+|||+.+++++|+++|.+||.|..+.+++.+++|||+|.+.++|+.|++.|++ ..+.|++|+|.|+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 34456789999999999999999999999999999999998899999999999999999998874 6899999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 105 ~~ 106 (119)
T 2ad9_A 105 NH 106 (119)
T ss_dssp SS
T ss_pred cC
Confidence 74
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=6.8e-22 Score=110.42 Aligned_cols=79 Identities=22% Similarity=0.427 Sum_probs=72.7
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG----RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
....+.++|||+|||+.+++++|+++|..||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34556789999999999999999999999999999999753 78999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 90 a~~ 92 (103)
T 2cq3_A 90 ATA 92 (103)
T ss_dssp CCS
T ss_pred ccc
Confidence 864
No 12
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=4.6e-22 Score=112.13 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=71.8
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCC-----ceEEEEe
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAG-----NPLRIEF 102 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-----~~l~v~~ 102 (105)
.....++|||+|||+++++++|+++|.+||.|..+.+... ++|||+|.+.++|+.|++.||+..+.| +.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 3456789999999999999999999999999999999876 899999999999999999999999999 9999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 90 a~~ 92 (108)
T 1x4c_A 90 DGP 92 (108)
T ss_dssp SSC
T ss_pred CCC
Confidence 874
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=4.3e-22 Score=109.48 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=72.2
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
....++.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456678999999999999999999999999999999864 368999999999999999999999999999999
Q ss_pred EEecc
Q 036554 100 IEFAK 104 (105)
Q Consensus 100 v~~~k 104 (105)
|+|||
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99986
No 14
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=7.1e-22 Score=110.35 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=73.3
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
.....+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34456678999999999999999999999999999999875 46899999999999999999999999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
|+++
T Consensus 89 ~a~~ 92 (103)
T 2cqi_A 89 WATT 92 (103)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9874
No 15
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=7.4e-22 Score=110.87 Aligned_cols=80 Identities=25% Similarity=0.489 Sum_probs=73.2
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-------CcEEEEEeCCHHHHHHHHHHh-cCCccCCce
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-------RSYAFINFKIEEDAIASMKAL-QGFPLAGNP 97 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~ 97 (105)
.....+.++|||+|||+.+++++|+.+|.+||.|..+.+... +++|||+|.+.++|+.|++.| ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344566789999999999999999999999999999998754 689999999999999999999 999999999
Q ss_pred EEEEeccC
Q 036554 98 LRIEFAKA 105 (105)
Q Consensus 98 l~v~~~k~ 105 (105)
|+|.|+++
T Consensus 89 l~v~~a~~ 96 (107)
T 2cph_A 89 LVLEWADS 96 (107)
T ss_dssp CEEEECCC
T ss_pred EEEEeCCC
Confidence 99999874
No 16
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-21 Score=110.28 Aligned_cols=79 Identities=25% Similarity=0.587 Sum_probs=72.1
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP---GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
....+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+|.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3455678999999999999999999999999999998874 3689999999999999999999999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3.8e-22 Score=111.23 Aligned_cols=80 Identities=26% Similarity=0.515 Sum_probs=72.8
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
.....+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34455678999999999999999999999999999999874 368999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 86 v~~a~~ 91 (102)
T 1x5s_A 86 VDQAGK 91 (102)
T ss_dssp EEEEEC
T ss_pred EEECCC
Confidence 999864
No 18
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=110.62 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=72.4
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
....+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3445678999999999999999999999999999999883 478999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 864
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.2e-22 Score=108.99 Aligned_cols=80 Identities=29% Similarity=0.445 Sum_probs=72.7
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
....++.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456778999999999999999999999999999998863 357999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 20
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.88 E-value=3e-22 Score=108.26 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+.-|||+||++.+++++|+++|.+||+|..+.+..++|||||+|.+.++|..|++.||+..+.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999874
No 21
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.9e-22 Score=112.54 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=71.3
Q ss_pred CCCccEEEEcCCCCC-cCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHN-IEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQG--FPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~k~ 105 (105)
.+++++|||+|||++ +++++|+.+|.+||.|..+.+.+.+++|||+|.+.++|+.|++.|++ ..+.|+.|+|.|+++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 556889999999998 99999999999999999999999999999999999999999998864 569999999999863
No 22
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.9e-22 Score=109.28 Aligned_cols=77 Identities=19% Similarity=0.404 Sum_probs=71.3
Q ss_pred CCCccEEEEcCCCCCcCHHHHH----HHhhcCCCeeEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 29 TPPSRHLWVGNLSHNIEEANLT----DQFLRFGELESVAFQPG---RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
....++|||+|||+.+++++|+ ++|.+||.|..+.+... +++|||+|.+.++|+.|++.||+..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999 99999999999999743 7899999999999999999999999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
|+++
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9875
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=5.8e-22 Score=112.15 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.++.++|||+|||+.+++++|+++|.+||.|..+.++. ++|+|||+|.+.++|+.|++.||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999998863 368999999999999999999999999999999999
Q ss_pred cc
Q 036554 103 AK 104 (105)
Q Consensus 103 ~k 104 (105)
++
T Consensus 83 a~ 84 (110)
T 3s8s_A 83 DI 84 (110)
T ss_dssp CS
T ss_pred CC
Confidence 85
No 24
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.3e-22 Score=111.37 Aligned_cols=76 Identities=30% Similarity=0.561 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
+..++|||+|||..+++++|+.+|.+||.|..+.+.+.+++|||+|.+.++|+.|+..|++..+.|+.|+|.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999985
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.2e-22 Score=111.05 Aligned_cols=79 Identities=28% Similarity=0.602 Sum_probs=72.3
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999999998863 4789999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 87 ~~a~~ 91 (102)
T 2cqb_A 87 NLAKP 91 (102)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99874
No 26
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=7.4e-22 Score=110.90 Aligned_cols=81 Identities=30% Similarity=0.548 Sum_probs=72.7
Q ss_pred CCCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 25 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
......+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344566789999999999999999999999999999998873 368999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|++.
T Consensus 102 V~~a~s 107 (107)
T 3ulh_A 102 IQLVTS 107 (107)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999863
No 27
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=109.59 Aligned_cols=79 Identities=28% Similarity=0.496 Sum_probs=72.1
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....+.++|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999988743 579999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 90 ~~a~~ 94 (103)
T 2cq0_A 90 EWAKP 94 (103)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99874
No 28
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=106.58 Aligned_cols=75 Identities=20% Similarity=0.447 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
.++.++|||+|||+.+++++|+++|.+||.|..+.+. +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4567899999999999999999999999999999988 67999999999999999999999999999999999864
No 29
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.4e-22 Score=113.26 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
..++|||+|||+.+++++|+.+|.+||.|..+.+.+.+++|||+|.+.++|+.|++.||+..+.|+.|+|.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999999999999889999999999999999999999999999999999985
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=1.7e-21 Score=110.70 Aligned_cols=80 Identities=25% Similarity=0.483 Sum_probs=72.7
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
.....+.++|||+|||+.+++++|+++|..||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334556789999999999999999999999999999988743 58999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 89 V~~a~~ 94 (115)
T 2dgo_A 89 TNWATR 94 (115)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 999864
No 31
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-21 Score=109.05 Aligned_cols=79 Identities=28% Similarity=0.477 Sum_probs=72.2
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455678999999999999999999999999999998874 3579999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 90 ~~a~~ 94 (105)
T 1x5u_A 90 NKASA 94 (105)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99864
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.5e-21 Score=107.38 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=70.8
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||..+++++|+++|.+||.|..+.++. .+++|||+|.+.++|+.|++ |++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 355678999999999999999999999999999999864 46899999999999999999 99999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
|+++
T Consensus 85 ~a~~ 88 (99)
T 2dgs_A 85 RAEP 88 (99)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9864
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=1.1e-21 Score=106.02 Aligned_cols=76 Identities=29% Similarity=0.632 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.++.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999998853 378999999999999999999999999999999999
Q ss_pred cc
Q 036554 103 AK 104 (105)
Q Consensus 103 ~k 104 (105)
+|
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 34
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=110.67 Aligned_cols=77 Identities=18% Similarity=0.510 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
.++.++|||+|||..+++++|+.+|..||.|..+.+...+++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 44568999999999999999999999999999999998899999999999999999999999999999999999874
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.2e-21 Score=107.16 Aligned_cols=77 Identities=12% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..+.++|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 455689999999999999999999999999999988743 489999999999999999999999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
+|
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 36
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.87 E-value=7.9e-21 Score=109.33 Aligned_cols=82 Identities=29% Similarity=0.554 Sum_probs=74.0
Q ss_pred CCCCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceE
Q 036554 24 GGRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPL 98 (105)
Q Consensus 24 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 98 (105)
.......++++|||+|||..+++++|+++|..||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|
T Consensus 27 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 27 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3344556778999999999999999999999999999999874 46899999999999999999999999999999
Q ss_pred EEEeccC
Q 036554 99 RIEFAKA 105 (105)
Q Consensus 99 ~v~~~k~ 105 (105)
+|.||.+
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999864
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=109.40 Aligned_cols=80 Identities=26% Similarity=0.401 Sum_probs=72.6
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
.+...+.++|||+|||..+++++|+.+|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34455678999999999999999999999999999998864 368999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 87 V~~a~~ 92 (103)
T 2dnm_A 87 VQVARY 92 (103)
T ss_dssp EEECSS
T ss_pred EEECCc
Confidence 999873
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=8.1e-22 Score=112.27 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=68.7
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..+|||+|||+.+++++|+++|.+||.|..++++. ++|||||+|.+.++|+.|++.|++..+.|+.|+|.++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999998873 368999999999999999999999999999999999763
No 39
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.9e-21 Score=109.57 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=72.0
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....++.++|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 334556789999999999999999999999999999988743 689999999999999999999999999999999
Q ss_pred Eecc
Q 036554 101 EFAK 104 (105)
Q Consensus 101 ~~~k 104 (105)
.|++
T Consensus 89 ~~a~ 92 (114)
T 2do0_A 89 KMDE 92 (114)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9986
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=106.27 Aligned_cols=77 Identities=26% Similarity=0.464 Sum_probs=69.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..+.++|||+|||..+++++|+++|++||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 345689999999999999999999999999999988743 58999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 874
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=9.5e-22 Score=108.28 Aligned_cols=80 Identities=29% Similarity=0.495 Sum_probs=72.1
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
+...++.++|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344566789999999999999999999999999999988743 689999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=1.5e-21 Score=104.98 Aligned_cols=74 Identities=34% Similarity=0.596 Sum_probs=69.1
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
+.+|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999988743 68999999999999999999999999999999999875
No 43
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=106.08 Aligned_cols=77 Identities=22% Similarity=0.478 Sum_probs=71.2
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
....+.++|||+|||+.+++++|+++|.+||.|..+.+.+ ++|||+|.+.++|+.|++.||+..+.|+.|+|.|+++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 3455678999999999999999999999999999999884 4999999999999999999999999999999999864
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=3.8e-21 Score=109.72 Aligned_cols=79 Identities=23% Similarity=0.527 Sum_probs=71.7
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
....++.++|||+|||+++++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999863 368999999999999999999999999999999
Q ss_pred EEecc
Q 036554 100 IEFAK 104 (105)
Q Consensus 100 v~~~k 104 (105)
|+|+|
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99986
No 45
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.2e-21 Score=108.89 Aligned_cols=78 Identities=27% Similarity=0.490 Sum_probs=71.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhc------CCccCC
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQ------GFPLAG 95 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~------~~~~~g 95 (105)
...+.++|||+|||+.+++++|+.+|..||.|..+.+.. .+++|||+|.+.++|+.|++.|+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 455678999999999999999999999999999999873 47899999999999999999999 999999
Q ss_pred ceEEEEeccC
Q 036554 96 NPLRIEFAKA 105 (105)
Q Consensus 96 ~~l~v~~~k~ 105 (105)
+.|+|.|+++
T Consensus 91 ~~l~v~~a~~ 100 (111)
T 1x4h_A 91 RQLKVDLAVT 100 (111)
T ss_dssp CEEEEECCCC
T ss_pred EEEEEEECCC
Confidence 9999999864
No 46
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=1.9e-21 Score=108.64 Aligned_cols=75 Identities=35% Similarity=0.597 Sum_probs=70.1
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..+.++|||+|||+.+++++|+++|.+||.|..+.+. +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4567899999999999999999999999999999888 56999999999999999999999999999999999864
No 47
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.1e-21 Score=105.72 Aligned_cols=76 Identities=34% Similarity=0.619 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
++.++|||+|||..+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4678999999999999999999999999999999874 3679999999999999999999999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=5.3e-21 Score=107.08 Aligned_cols=77 Identities=27% Similarity=0.478 Sum_probs=71.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCC---ceEEE
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLAG---NPLRI 100 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g---~~l~v 100 (105)
.++.++|||+|||+.+++++|+.+|..||.|..+.+... +++|||+|.+.++|+.|++.|++..+.+ +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999998754 6899999999999999999999999988 99999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 99864
No 49
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=2.6e-21 Score=106.84 Aligned_cols=75 Identities=23% Similarity=0.476 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
|+++|||+|||..+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999999999998743 6899999999999999999999999999999999987
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
+
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=1.5e-21 Score=106.86 Aligned_cols=77 Identities=17% Similarity=0.341 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
.++.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45678999999999999999999999999999998874 46899999999999999999999999999999999987
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
+
T Consensus 85 ~ 85 (92)
T 2dgv_A 85 N 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.1e-21 Score=105.05 Aligned_cols=77 Identities=23% Similarity=0.469 Sum_probs=68.9
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ--PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..+..++|||+|||+.+++++|+.+|.+||.|. +.++ ..+++|||+|.+.++|+.|++.||+..+.|+.|+|.|+++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 344568999999999999999999999999985 4443 5689999999999999999999999999999999999875
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=6.1e-21 Score=108.48 Aligned_cols=79 Identities=18% Similarity=0.476 Sum_probs=71.6
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
...++.++|||+|||+++++++|+++|..||.|..+.+... +++|||+|.+.++|+.|++.||+..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999988743 479999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 100 ~~a~~ 104 (115)
T 2cpz_A 100 QLKRS 104 (115)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 53
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=2.3e-21 Score=112.48 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=73.0
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
....++.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..|.|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456778999999999999999999999999999999873 468999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 120 V~~a~~ 125 (129)
T 2kxn_B 120 VDFSIT 125 (129)
T ss_dssp ESCCSS
T ss_pred EEEecC
Confidence 999864
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.8e-21 Score=106.22 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=71.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..+.++|||+|||+.+++++|+++|..||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999864 358999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 55
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=104.96 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=70.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
...+.++|||+|||+.+++++|+.+|.+||.|..+.+.+ ++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 345678999999999999999999999999999999884 5999999999999999999999999999999999874
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=107.68 Aligned_cols=76 Identities=25% Similarity=0.491 Sum_probs=70.0
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC---------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP---------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
.+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999998862 3579999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99864
No 57
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=4.9e-21 Score=107.36 Aligned_cols=79 Identities=20% Similarity=0.413 Sum_probs=71.6
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCcc---CCce
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPL---AGNP 97 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~ 97 (105)
....+.++|||+|||..+++++|+++|.+||.|..+.++. .+++|||+|.+.++|+.|++.|++..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455678999999999999999999999999999999874 468999999999999999999999887 8899
Q ss_pred EEEEeccC
Q 036554 98 LRIEFAKA 105 (105)
Q Consensus 98 l~v~~~k~ 105 (105)
|+|.|+++
T Consensus 88 l~v~~a~~ 95 (106)
T 2dgp_A 88 IQVKPADS 95 (106)
T ss_dssp CEEEECCC
T ss_pred EEEEECCc
Confidence 99999864
No 58
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=104.83 Aligned_cols=77 Identities=35% Similarity=0.572 Sum_probs=70.5
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcC--CCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRF--GELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
....+.++|||+|||+.+++++|+.+|.+| |.|..+.+. +++|||+|.+.++|+.|+..||+..+.|+.|+|.|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 345567899999999999999999999999 889888776 5799999999999999999999999999999999987
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
+
T Consensus 88 ~ 88 (99)
T 2cpd_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 59
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.86 E-value=2.5e-21 Score=106.98 Aligned_cols=78 Identities=32% Similarity=0.650 Sum_probs=71.3
Q ss_pred CCCCccEEEEcCCCCCcCHHHHH----HHhhcCCCeeEEEEe---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLT----DQFLRFGELESVAFQ---PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
..++.++|||+|||+.+++++|+ .+|.+||.|..+.+. ..+++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45677899999999999999999 999999999999887 45789999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99874
No 60
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=107.14 Aligned_cols=77 Identities=25% Similarity=0.502 Sum_probs=70.7
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCee-EEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCce----
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELE-SVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNP---- 97 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~-~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~---- 97 (105)
..+.++|||+|||+.+++++|+++|.+||.|. .+.+... +++|||+|.+.++|+.|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999998 9988743 489999999999999999999999999999
Q ss_pred EEEEeccC
Q 036554 98 LRIEFAKA 105 (105)
Q Consensus 98 l~v~~~k~ 105 (105)
|+|.|+++
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 99999874
No 61
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.86 E-value=7.4e-21 Score=105.34 Aligned_cols=77 Identities=18% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCCCCccEEEEcCCCC-CcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 27 ANTPPSRHLWVGNLSH-NIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
...++.++|||+|||+ .+++++|+.+|..||.|..+.+. +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 4456789999999998 99999999999999999999885 78999999999999999999999999999999999874
No 62
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=107.69 Aligned_cols=78 Identities=21% Similarity=0.522 Sum_probs=71.3
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...++++|||+|||..+++++|+.+|..||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999988732 6899999999999999999999999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
|+++
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 9863
No 63
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.86 E-value=4.3e-21 Score=108.21 Aligned_cols=77 Identities=23% Similarity=0.507 Sum_probs=71.1
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
....+.++|||+|||..+++++|+.+|.+||.|..+.+. +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 345567899999999999999999999999999999988 78999999999999999999999999999999999874
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.9e-21 Score=107.90 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=70.8
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCee--------EEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCcc
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELE--------SVAFQPG------RSYAFINFKIEEDAIASMKALQGFPL 93 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--------~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~ 93 (105)
...+.++|||+|||+.+++++|+++|..||.|. .+.+... +++|||+|.+.++|+.|++.|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999998 5777632 68999999999999999999999999
Q ss_pred CCceEEEEeccC
Q 036554 94 AGNPLRIEFAKA 105 (105)
Q Consensus 94 ~g~~l~v~~~k~ 105 (105)
.|+.|+|.|+++
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999874
No 65
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=104.97 Aligned_cols=79 Identities=20% Similarity=0.430 Sum_probs=71.5
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeE--------EEEeCC------CcEEEEEeCCHHHHHHHHHHhcCC
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES--------VAFQPG------RSYAFINFKIEEDAIASMKALQGF 91 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~ 91 (105)
....++.++|||+|||.++++++|+++|.+||.|.. +.+... +|+|||+|.+.++|+.|++.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344566789999999999999999999999999988 877632 589999999999999999999999
Q ss_pred ccCCceEEEEecc
Q 036554 92 PLAGNPLRIEFAK 104 (105)
Q Consensus 92 ~~~g~~l~v~~~k 104 (105)
.+.|+.|+|.||+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4e-21 Score=108.46 Aligned_cols=79 Identities=23% Similarity=0.438 Sum_probs=72.5
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
....+.++|||+|||..+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3455678999999999999999999999999999998874 378999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 67
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=109.78 Aligned_cols=78 Identities=18% Similarity=0.396 Sum_probs=71.5
Q ss_pred CCCCCccEEEE--cCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCcc-----CCceEE
Q 036554 27 ANTPPSRHLWV--GNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPL-----AGNPLR 99 (105)
Q Consensus 27 ~~~~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-----~g~~l~ 99 (105)
....++.+||| +||++.+++++|+++|.+||.|..+.+...++||||+|.+.++|+.|++.|||..+ .+++|.
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 34456789999 77999999999999999999999999988899999999999999999999999987 688999
Q ss_pred EEecc
Q 036554 100 IEFAK 104 (105)
Q Consensus 100 v~~~k 104 (105)
|.|++
T Consensus 100 v~~a~ 104 (114)
T 2cq2_A 100 LNFVE 104 (114)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 99986
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=5.5e-21 Score=103.76 Aligned_cols=75 Identities=17% Similarity=0.465 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..++|||+|||..+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999998852 5789999999999999999999999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
+|
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 69
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-20 Score=103.90 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=70.2
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..+.++|||+|| .+++++|+.+|.+||.|..+.+.+.+++|||+|.+.++|+.|+..|++..+.|+.|+|.|+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 446689999996 899999999999999999999998899999999999999999999999999999999999864
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=5.1e-21 Score=107.99 Aligned_cols=79 Identities=18% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....+.++|||+|||..+++++|+.+|..||.|..+.+... +++|||+|.+.++|+.|+..|++..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556789999999999999999999999999999998643 689999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 101 ~~a~~ 105 (110)
T 1oo0_B 101 DWCFV 105 (110)
T ss_dssp EESEE
T ss_pred EEccc
Confidence 99863
No 71
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=4.4e-21 Score=110.57 Aligned_cols=78 Identities=21% Similarity=0.521 Sum_probs=71.7
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....+.++|||+|||+.+++++|+.+|.+||.|..+.++.. +++|||+|.+.++|+.|++.||+..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556789999999999999999999999999999988743 789999999999999999999999999999999
Q ss_pred Eecc
Q 036554 101 EFAK 104 (105)
Q Consensus 101 ~~~k 104 (105)
.|++
T Consensus 97 ~~a~ 100 (126)
T 3ex7_B 97 DWCF 100 (126)
T ss_dssp EESE
T ss_pred EEec
Confidence 9985
No 72
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=110.49 Aligned_cols=79 Identities=28% Similarity=0.509 Sum_probs=70.9
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHH----HHhhcCCCeeEEEEe---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLT----DQFLRFGELESVAFQ---PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
...++.++|||+|||+.+++++|+ .+|++||.|..|.+. +.+|+|||+|.+.++|+.|++.|||..+.|++|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345667899999999999999875 689999999998885 3579999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 104 V~~a~~ 109 (127)
T 2a3j_A 104 ITFSET 109 (127)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999874
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=107.64 Aligned_cols=80 Identities=33% Similarity=0.586 Sum_probs=72.5
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
....++.++|||+|||..+++++|+.+|.+||.|..+.+.. .+|+|||+|.+.++|+.|++.|++..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33455678999999999999999999999999999998873 258999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999875
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=7.8e-21 Score=108.38 Aligned_cols=77 Identities=29% Similarity=0.489 Sum_probs=71.1
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..+.++|||+|||..+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345689999999999999999999999999999998753 589999999999999999999999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 75
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=105.71 Aligned_cols=76 Identities=16% Similarity=0.406 Sum_probs=69.3
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
...+.++|||+|||+.+++++|+.+|..|| |..+.++. .+++|||+|.+.++|+.|+ .|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 99998863 2689999999999999999 89999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.++++
T Consensus 89 ~~a~~ 93 (104)
T 1wi8_A 89 DVADQ 93 (104)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 76
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.86 E-value=1.4e-20 Score=106.21 Aligned_cols=75 Identities=24% Similarity=0.494 Sum_probs=69.9
Q ss_pred CCCCccEEEEcCCCCC-cCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 28 NTPPSRHLWVGNLSHN-IEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
...+.++|||+|||+. +++++|+++|.+||.|..+.+ .+++|||+|.+.++|+.|++.|++..+.|+.|+|.|++
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3445689999999999 999999999999999999988 47899999999999999999999999999999999986
No 77
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=5.9e-22 Score=108.67 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=66.3
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCC-CeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhc-CCccCCceEEEEec
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFG-ELESVAFQP------GRSYAFINFKIEEDAIASMKALQ-GFPLAGNPLRIEFA 103 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~ 103 (105)
+.+|||+|||+.+++++|+++|++|| .|..+++++ .+|||||+|.+.++|+.|++.++ +..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 799888863 46899999999999999999775 46799999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
+|
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 78
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-21 Score=106.47 Aligned_cols=76 Identities=30% Similarity=0.517 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEE-EEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESV-AFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.+.++|||+|||+.+++++|+.+|.+||.|..+ .+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999888 7764 368999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 864
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=107.35 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=70.2
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.+++ .+.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3455678999999999999999999999999999999874 358999999999999999999998 899999999
Q ss_pred Eecc
Q 036554 101 EFAK 104 (105)
Q Consensus 101 ~~~k 104 (105)
.|++
T Consensus 91 ~~a~ 94 (116)
T 2cqd_A 91 NLAY 94 (116)
T ss_dssp EEST
T ss_pred EEcc
Confidence 9985
No 80
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=4e-20 Score=106.42 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcE-EEEEeCCHHHHHHHHHHhcCCccCC--ceEEEEeccC
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSY-AFINFKIEEDAIASMKALQGFPLAG--NPLRIEFAKA 105 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~k~ 105 (105)
..|||+||++.+++++|+.+|++||.|..+.+....|+ |||+|.+.++|+.|++.|||..|.| +.|+|.||++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 35689999999999999999999999999988765686 9999999999999999999999987 6899999975
No 81
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.6e-21 Score=105.55 Aligned_cols=76 Identities=22% Similarity=0.461 Sum_probs=69.2
Q ss_pred CCCCccEEEEcCCCC-CcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 28 NTPPSRHLWVGNLSH-NIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..++.++|||+|||+ .+++++|+.+|.+||.|..+.+. +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 356788999999998 99999999999999999999886 67999999999999999999999999999999999863
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.7e-21 Score=108.11 Aligned_cols=77 Identities=17% Similarity=0.412 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCCcCHHHHH---HHhhcCCCeeEEEEeCC---------CcEEEEEeCCHHHHHHHHHHhcCCccCCc
Q 036554 29 TPPSRHLWVGNLSHNIEEANLT---DQFLRFGELESVAFQPG---------RSYAFINFKIEEDAIASMKALQGFPLAGN 96 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~i~~~~~~~~---------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 96 (105)
..+.++|||+|||+.+++++|+ ++|.+||.|..+.+.+. +|+|||+|.+.++|+.|++.||+..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4456899999999999999999 99999999999998743 37999999999999999999999999999
Q ss_pred eEEEEeccC
Q 036554 97 PLRIEFAKA 105 (105)
Q Consensus 97 ~l~v~~~k~ 105 (105)
.|+|.|+++
T Consensus 92 ~l~V~~a~~ 100 (111)
T 2cpi_A 92 TLKASLGTT 100 (111)
T ss_dssp EEEEESCCC
T ss_pred EEEEEeccc
Confidence 999999874
No 83
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=105.61 Aligned_cols=74 Identities=16% Similarity=0.382 Sum_probs=66.5
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCC--eeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCC----ccCCceEE
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGE--LESVAFQP------GRSYAFINFKIEEDAIASMKALQGF----PLAGNPLR 99 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~~l~ 99 (105)
=.+|||+|||+.+++++|+++|++||. +..+++.+ ++|||||+|.+.++|+.|++.||+. .++|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 56787753 4789999999999999999999996 48999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|+|||+
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999984
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=106.94 Aligned_cols=78 Identities=22% Similarity=0.458 Sum_probs=71.4
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhc-CCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCc-cCCceEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLR-FGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFP-LAGNPLRI 100 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~-~~g~~l~v 100 (105)
...+.++|||+|||+.+++++|+.+|.+ ||.|..+.+.. .+++|||+|.+.++|+.|++.|++.. +.|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4456789999999999999999999999 99999998874 36899999999999999999999999 99999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 85 ~~a~~ 89 (104)
T 2dhg_A 85 SVAIP 89 (104)
T ss_dssp CBCCC
T ss_pred EEccC
Confidence 99863
No 85
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.6e-20 Score=104.88 Aligned_cols=78 Identities=21% Similarity=0.434 Sum_probs=69.9
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
.....+.++|||+|||+.+++++|+++|.+|| |..+.++.. +++|||+|.+.++|+.|+ .|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34456678999999999999999999999996 999988732 579999999999999999 7999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 87 V~~a~~ 92 (103)
T 2dng_A 87 VDIAEG 92 (103)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999864
No 86
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=106.31 Aligned_cols=76 Identities=22% Similarity=0.422 Sum_probs=68.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCC-eeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcC-CccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGE-LESVAFQPGRSYAFINFKIEEDAIASMKALQG-FPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~~k~ 105 (105)
..+.++|||+|||+++++++|+++|.+||. |..+.+ ..+++|||+|.+.++|+.|++.||+ ..+.|+.|+|.|+++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 345689999999999999999999999999 555544 4589999999999999999999999 999999999999874
No 87
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.85 E-value=5.1e-21 Score=108.36 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=70.4
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCC-CeeEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFG-ELESVAFQ--PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
..+...+|||+|||+.+++++|+++|.+|| .|..+.+. ..+|+|||+|.+.++|+.|++.||+..+.|+.|+|.+++
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 344568999999999999999999999999 89999886 468999999999999999999999999999999999985
No 88
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=1.4e-20 Score=106.92 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=71.2
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP---GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
.+++++|||+|||..+++++|+.+|..||.|..+.+.. .+++|||+|.+.++|+.|+..||+..+.|+.|+|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45678999999999999999999999999999998863 468999999999999999999999999999999999863
No 89
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=1.8e-20 Score=110.98 Aligned_cols=79 Identities=29% Similarity=0.515 Sum_probs=73.3
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
....+.++|||+|||+.+++++|+.+|.+||.|..+.+... +|+|||+|.+.++|+.|+..||+..+.|+.|+|.|+++
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34556789999999999999999999999999999999865 89999999999999999999999999999999999875
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=106.90 Aligned_cols=77 Identities=16% Similarity=0.383 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCC-eeEEEEe-------CCCcEEEEEeCCHHHHHHHHHHhc--CCccCCceE
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGE-LESVAFQ-------PGRSYAFINFKIEEDAIASMKALQ--GFPLAGNPL 98 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~-------~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l 98 (105)
..+.++|||+|||+.+++++|+.+|.+||. |..+.++ ..+++|||+|.+.++|+.|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999887 467999999999999999999996 589999999
Q ss_pred EEEeccC
Q 036554 99 RIEFAKA 105 (105)
Q Consensus 99 ~v~~~k~ 105 (105)
+|.|+++
T Consensus 85 ~V~~a~~ 91 (109)
T 2dis_A 85 AVDWAEP 91 (109)
T ss_dssp EEEESCS
T ss_pred EEEEcCC
Confidence 9999874
No 91
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=3.5e-21 Score=107.20 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=69.3
Q ss_pred CccEEEEcCCCC------CcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCC-ce
Q 036554 31 PSRHLWVGNLSH------NIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAG-NP 97 (105)
Q Consensus 31 ~~~~l~v~nl~~------~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~ 97 (105)
..++|||+|||. .+++++|+++|.+||.|..+.++. ++|+|||+|.+.++|+.|++.||+..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 999999999999999999998862 46899999999999999999999999999 99
Q ss_pred EEEEeccC
Q 036554 98 LRIEFAKA 105 (105)
Q Consensus 98 l~v~~~k~ 105 (105)
|+|.+++|
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999863
No 92
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=108.86 Aligned_cols=79 Identities=27% Similarity=0.598 Sum_probs=71.2
Q ss_pred CCCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceE
Q 036554 25 GRANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPL 98 (105)
Q Consensus 25 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 98 (105)
.....++.++|||+|||..+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 334556779999999999999999999999999999998863 37899999999999999999999999999999
Q ss_pred EEEec
Q 036554 99 RIEFA 103 (105)
Q Consensus 99 ~v~~~ 103 (105)
+|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 93
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=105.80 Aligned_cols=73 Identities=26% Similarity=0.518 Sum_probs=69.2
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
++|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999999875 89999999999999999999999999999999999864
No 94
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-21 Score=108.04 Aligned_cols=77 Identities=27% Similarity=0.506 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..+.++|||+|||..+++++|+.+|..||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345689999999999999999999999999999988732 68999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 85 a~~ 87 (104)
T 1p1t_A 85 AAS 87 (104)
T ss_dssp TTC
T ss_pred CCC
Confidence 874
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=9.3e-21 Score=104.86 Aligned_cols=77 Identities=14% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ------PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~------~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.+..++|||+|||+.+++++|+++|.+||.|..+.++ +.+++|||+|.+.++|+.|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456899999999999999999999999998655443 2368999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 863
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=4.7e-21 Score=111.94 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=72.3
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
++...+.++|||+|||+.+++++|+++|..||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999998863 368999999999999999999999999999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 121 V~~a~~ 126 (135)
T 2lea_A 121 VQMARY 126 (135)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999874
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=105.96 Aligned_cols=78 Identities=18% Similarity=0.338 Sum_probs=70.7
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
...++.++|||+|||+.+++++|+++|..||.|..+.++.. +++|||+|.+.++|+.|++. ++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34566789999999999999999999999999999988743 47999999999999999998 999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.++++
T Consensus 90 ~~a~~ 94 (105)
T 2dh8_A 90 KPCTP 94 (105)
T ss_dssp CCSCC
T ss_pred EEccC
Confidence 99864
No 98
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=102.92 Aligned_cols=79 Identities=25% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ--PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
....+.++|||+|||+.+++++|+++|.+||.|.-+... +.+++|||+|.+.++|+.|++.|++..+.|+.|+|.|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 345567999999999999999999999999987321111 247899999999999999999999999999999999986
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
+
T Consensus 90 ~ 90 (101)
T 2fc9_A 90 P 90 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 99
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-19 Score=102.82 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=70.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCcc--------C
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPL--------A 94 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~--------~ 94 (105)
...+.++|||+|||+.+++++|+.+|..||.|..+.+... +++|||+|.+.++|+.|++.||+..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456689999999999999999999999999999988743 68999999999999999999999988 5
Q ss_pred CceEEEEeccC
Q 036554 95 GNPLRIEFAKA 105 (105)
Q Consensus 95 g~~l~v~~~k~ 105 (105)
+++|.|.|++|
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999875
No 100
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.84 E-value=1.6e-20 Score=118.57 Aligned_cols=81 Identities=20% Similarity=0.414 Sum_probs=72.5
Q ss_pred CCCCCCCccEEEEcCCCCCc---------CHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCcc--
Q 036554 25 GRANTPPSRHLWVGNLSHNI---------EEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPL-- 93 (105)
Q Consensus 25 ~~~~~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-- 93 (105)
........++|||+||+..+ ++++|+.+|.+||.|..|.++..+|+|||+|.+.++|+.|++.|++..+
T Consensus 127 ~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 127 IGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp ----CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 34456778999999999998 6999999999999999999999999999999999999999999999999
Q ss_pred ----------CCceEEEEeccC
Q 036554 94 ----------AGNPLRIEFAKA 105 (105)
Q Consensus 94 ----------~g~~l~v~~~k~ 105 (105)
.|+.|.|.||++
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-
T ss_pred cccccccccCCCCEEEEEEccC
Confidence 899999999873
No 101
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=108.57 Aligned_cols=79 Identities=27% Similarity=0.517 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....+.++|||+|||..+++++|+++|..||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999998863 2689999999999999999999999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 117 ~~a~~ 121 (139)
T 1u6f_A 117 ALAAS 121 (139)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99874
No 102
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=3.3e-21 Score=105.31 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=64.0
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCC--CeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFG--ELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
.+|||+|||+++++++|+++|.+|| .|..+.+.. .+|+|||+|.+.++|+.|++.||+..+.|+.|+|.+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 898888863 35899999999999999999999999999999999986
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
|
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 103
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=104.83 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=69.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..+.++|||+|||+.+++++|+.+|++||.|..+.+.. .+|+|||+|.+.++|+.|+. +++..+.|+.|.|.|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999874 47999999999999999999 8999999999999986
Q ss_pred c
Q 036554 104 K 104 (105)
Q Consensus 104 k 104 (105)
+
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 104
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.84 E-value=1.6e-20 Score=102.17 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
..++|||+|||+.+++++|+++|.+| .|..+.+.+.+++|||+|.+.++|+.|++.||+..+.|+.|+|.|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999888888999999999999999999999999999999999985
No 105
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=5.6e-21 Score=105.16 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=66.6
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.++.++|||+|||+.+++++|+++|.+||.|..+.++. .+++|||+|.+.++|+.|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 44568999999999999999999999999987655542 368999999999999999999999999999999998
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 763
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-20 Score=100.93 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=69.0
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.....++|||+|||+.+++++|+++|..| .|..+.++.. +|+|||+|.+.++|+.|+. |++..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34556899999999999999999999999 9999988742 6899999999999999999 999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 864
No 107
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.1e-21 Score=103.42 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=69.8
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.+++++|||+|||+.+++++|+.+|.+||.|..+.+... +++|||+|.+.++|+.|++.||+..+.|+.|++.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 346789999999999999999999999999999988743 68999999999999999999999999999999988
Q ss_pred cc
Q 036554 103 AK 104 (105)
Q Consensus 103 ~k 104 (105)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 108
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=3.8e-20 Score=110.19 Aligned_cols=78 Identities=22% Similarity=0.401 Sum_probs=71.4
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||..+++++|+++|.+||.|..|.++. .+++|||+|.+.++|+.|++.|++..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999863 35799999999999999999999999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
|+++
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9874
No 109
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.8e-20 Score=103.37 Aligned_cols=78 Identities=33% Similarity=0.483 Sum_probs=69.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCe----eEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGEL----ESVAFQ--PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
..++.++|||+|||+.+++++|+.+|..||.| ..+.+. +.+++|||+|.+.++|+.|++.|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998 555555 346899999999999999999999999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
|+++
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9874
No 110
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.84 E-value=1.5e-19 Score=109.86 Aligned_cols=77 Identities=29% Similarity=0.536 Sum_probs=70.7
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34568999999999999999999999999999999874 4689999999999999999999999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
.+
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 111
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=2.6e-20 Score=101.27 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=68.5
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
..++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|+ .|++..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 357999999999999999999999999999998863 3689999999999999999 899999999999999987
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 112
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.7e-20 Score=101.04 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=69.2
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEE-EeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVA-FQPG--RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~-~~~~--~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
....++|||+|||+.+++++|+.+|..||.|..++ ++.. .+.|||+|.+.++|+.|+..||+..+.|+.|+|.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 44568999999999999999999999999999994 6543 35699999999999999999999999999999999875
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=3.7e-20 Score=111.27 Aligned_cols=77 Identities=18% Similarity=0.513 Sum_probs=70.4
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||+.+++++|+.+|.+||.|..+.++.. ++||||+|.+.+.|+.|+..||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455689999999999999999999999999999998743 6899999999999999999999999999999999
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
|++
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 985
No 114
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.83 E-value=6.9e-20 Score=106.00 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=68.1
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe-CCCcE-EEEEeCCHHHHHHHHHHhcCCccCC--ceEEEEeccC
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ-PGRSY-AFINFKIEEDAIASMKALQGFPLAG--NPLRIEFAKA 105 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~k~ 105 (105)
+-..|||+||++.+++++|+.+|++||.|..+.+. +.+++ |||+|.+.++|+.|++.|||..|.+ +.|+|+|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 34578899999999999999999999999999876 34677 9999999999999999999999988 8999999985
No 115
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=102.36 Aligned_cols=79 Identities=29% Similarity=0.481 Sum_probs=66.5
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ---PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
....+.++|||+|||+.+++++|+++|..|+.+..+... ..+++|||+|.+.++|+.|++.|++..+.|+.|+|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 345567899999999999999999999988643332221 23589999999999999999999999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 90 ~~ 91 (102)
T 2fc8_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 116
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=108.69 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=69.7
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeE--EEEeC------CCcEEEEEeCCHHHHHHHHHHhcCC----ccC
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES--VAFQP------GRSYAFINFKIEEDAIASMKALQGF----PLA 94 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~----~~~ 94 (105)
....+.++|||+|||+.+++++|+++|.+||.|.. ++++. .+|||||+|.+. +|..|+..|++. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999966 77763 368999999999 999999999999 999
Q ss_pred CceEEEEeccC
Q 036554 95 GNPLRIEFAKA 105 (105)
Q Consensus 95 g~~l~v~~~k~ 105 (105)
|+.|+|.|+++
T Consensus 97 gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 GKTINVEFAKG 107 (131)
T ss_dssp GCCCCCEECCC
T ss_pred CEEEEEEECCC
Confidence 99999999874
No 117
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-20 Score=106.13 Aligned_cols=74 Identities=20% Similarity=0.375 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
...++|||+|||..+++++|+.+|..||.|..+.+.. .+++|||+|.+.++|+.|+ .|++..+.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3458999999999999999999999999999999862 4689999999999999999 89999999999999997
Q ss_pred c
Q 036554 104 K 104 (105)
Q Consensus 104 k 104 (105)
+
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 5
No 118
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=103.73 Aligned_cols=75 Identities=16% Similarity=0.350 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCCc------CHHHHHHHhhcCCCeeEEEEe----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCc-eE
Q 036554 30 PPSRHLWVGNLSHNI------EEANLTDQFLRFGELESVAFQ----PGRSYAFINFKIEEDAIASMKALQGFPLAGN-PL 98 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~----~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l 98 (105)
...++|||+|||+.+ ++++|+.+|.+||.|..+.+. +.+|+|||+|.+.++|+.|+..||+..+.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 789999999999999999887 3478999999999999999999999999998 99
Q ss_pred EEEecc
Q 036554 99 RIEFAK 104 (105)
Q Consensus 99 ~v~~~k 104 (105)
+|.+++
T Consensus 93 ~V~~a~ 98 (105)
T 2nlw_A 93 RVNLFT 98 (105)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 999985
No 119
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=110.87 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCC--CeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFG--ELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..++|||+|||+++++++|+++|..|| .|..+.++. .+|||||+|.+.++|+.|++.|++..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 899998863 368999999999999999999999999999999999
Q ss_pred cc
Q 036554 103 AK 104 (105)
Q Consensus 103 ~k 104 (105)
++
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 120
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.83 E-value=8.1e-20 Score=104.88 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=70.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
...+.++|||+|+ ++++++|+.+|.+||.|..+.+...+++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3456789999996 699999999999999999999998899999999999999999999999999999999999874
No 121
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=7.7e-20 Score=99.14 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=67.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.. +|+|||+|.+.++|+.|++ +++..++|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4556789999999999999999999999999999988732 5799999999999999997 58888999999999
Q ss_pred ec
Q 036554 102 FA 103 (105)
Q Consensus 102 ~~ 103 (105)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 122
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=101.24 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeE-EEEe-----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELES-VAFQ-----PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~-----~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||+.+++++|+++|.+||.|.. +.+. +.+|+|||+|.+.++|+.|++. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3455689999999999999999999999999887 7665 2468999999999999999996 9999999999998
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
++.
T Consensus 90 ~~~ 92 (104)
T 1wg5_A 90 KSS 92 (104)
T ss_dssp EEC
T ss_pred ECC
Confidence 865
No 123
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=4.8e-20 Score=104.93 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCce-----EEEEecc
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNP-----LRIEFAK 104 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~-----l~v~~~k 104 (105)
...++|||+|||+.+++++|+++|.+||.|..+.++.. ++|||+|.+.++|+.|++.||+..|.|+. |+|..++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 34689999999999999999999999999999999876 89999999999999999999999999988 6666654
No 124
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-19 Score=100.20 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=68.9
Q ss_pred CCCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 26 RANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 26 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
.....+.++|||+|||+.+++++|+.+|..||.|..+.++.. +++|||+|.+.++|+.|++ ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 344566789999999999999999999999999999988643 5799999999999999998 56789999999
Q ss_pred EEeccC
Q 036554 100 IEFAKA 105 (105)
Q Consensus 100 v~~~k~ 105 (105)
|.|+++
T Consensus 87 v~~a~~ 92 (103)
T 2cqg_A 87 CKLPNS 92 (103)
T ss_dssp EECCCT
T ss_pred EEecCC
Confidence 999864
No 125
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=105.10 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=68.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCe-eEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGEL-ESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||+.+++++|+++|..||.| ..+.++. .+|+|||+|.+.++|+.|++. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 7787763 579999999999999999996 9999999999999
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
+++
T Consensus 90 ~a~ 92 (114)
T 2cpy_A 90 VVT 92 (114)
T ss_dssp EEC
T ss_pred ECC
Confidence 975
No 126
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.82 E-value=1.3e-19 Score=108.40 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=67.7
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCC--ceEEEEeccC
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP--GRSYAFINFKIEEDAIASMKALQGFPLAG--NPLRIEFAKA 105 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~k~ 105 (105)
..+|||+||++.+++++|+++|++||.|.++.+.. .+++|||+|.+.++|+.|++.|||..|.+ +.|+|.|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 45789999999999999999999999999998863 35799999999999999999999999965 9999999975
No 127
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.8e-19 Score=107.32 Aligned_cols=78 Identities=28% Similarity=0.463 Sum_probs=71.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+..+|||+|||+.+++++|+.+|..||.|..+.+.. .+|+|||+|.+.++|+.|++.||+..+.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345578999999999999999999999999999998863 46899999999999999999999999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
|+++
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9874
No 128
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=102.98 Aligned_cols=76 Identities=16% Similarity=0.404 Sum_probs=66.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
.....++|||+|||..+++++|+.+|..|| |..+.+.. .+|+|||+|.+.++|+.|+ .|++..+.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 99999864 2689999999999999999 79999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.++++
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 99875
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-20 Score=106.56 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEE-EEe-----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESV-AFQ-----PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~-----~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||+.+++++|+++|..||.|..+ .+. +.+|+|||+|.+.++|+.|++ ||+..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556899999999999999999999999998653 332 236899999999999999999 99999999999999
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
+++
T Consensus 100 ~a~ 102 (124)
T 1wel_A 100 PIT 102 (124)
T ss_dssp EEC
T ss_pred ECC
Confidence 975
No 130
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.81 E-value=2.3e-19 Score=111.19 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCccEEEEcCCC-CCcCHHHHHHHhhcCCCeeEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 30 PPSRHLWVGNLS-HNIEEANLTDQFLRFGELESVAFQP-GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 30 ~~~~~l~v~nl~-~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
.++++|||+||| +.+++++|+++|.+||.|..+++++ .+|+|||+|.+.++|+.|++.||+..+.|+.|+|.|++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 356899999999 7999999999999999999999886 47999999999999999999999999999999999985
No 131
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.81 E-value=1.4e-19 Score=97.97 Aligned_cols=73 Identities=27% Similarity=0.543 Sum_probs=68.3
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcC----C-------CeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCce
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRF----G-------ELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNP 97 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 97 (105)
..+.++|||+|||+.+++++|+++|.+| | .|..+.+.+.+++|||+|.+.++|+.|+ .|++..+.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 3457899999999999999999999999 8 8999999988999999999999999999 89999999999
Q ss_pred EEEEe
Q 036554 98 LRIEF 102 (105)
Q Consensus 98 l~v~~ 102 (105)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99874
No 132
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=102.98 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
.+.++|||+|||+.+++++|+.+|..||.|..+.++. .+++|||+|.+.++|+.|++. ++..+.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3458999999999999999999999999999998874 368999999999999999997 999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 133
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=8.6e-20 Score=104.31 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=67.8
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCC---eeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGE---LESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
..+.++|||+|||+.+++++|+++|..||. |..+.+.. .+|+|||+|.+.++|+.|++ +++..+.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 445689999999999999999999999998 78888763 36899999999999999999 9999999999999
Q ss_pred Eecc
Q 036554 101 EFAK 104 (105)
Q Consensus 101 ~~~k 104 (105)
.+++
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9874
No 134
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=100.90 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
....+.++|||+|||+.+++++|+++|.+||. ..+.++. .+++|||+|.+.++|+.|++ +++..+.++.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 33456689999999999999999999999995 4887763 36899999999999999996 79999999999998
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
++.
T Consensus 88 ~~~ 90 (102)
T 1wez_A 88 LNS 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 865
No 135
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=5.7e-20 Score=107.42 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCC---eeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGE---LESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPL 98 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 98 (105)
+...+.++|||+|||+.+++++|+++|.+||. |..+.++. .+|+|||+|.+.++|+.|++ +++..+.|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 44556789999999999999999999999999 77887763 36899999999999999999 99999999999
Q ss_pred EEEecc
Q 036554 99 RIEFAK 104 (105)
Q Consensus 99 ~v~~~k 104 (105)
+|.+++
T Consensus 118 ~V~~a~ 123 (136)
T 2hgl_A 118 EVFKSH 123 (136)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 136
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.2e-19 Score=104.29 Aligned_cols=73 Identities=19% Similarity=0.400 Sum_probs=67.8
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
.++|||+|||..+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|+ .|++..+.|+.|+|.|+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 58999999999999999999999999999998863 3689999999999999999 6999999999999999874
No 137
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.5e-19 Score=96.39 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=64.5
Q ss_pred CCCccE-EEEcCCCCCcCHHH----HHHHhhcCC-CeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRH-LWVGNLSHNIEEAN----LTDQFLRFG-ELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~-l~v~nl~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.+|..+ |||+|||+.+++++ |+.+|.+|| .|.++ . .|+|||.|.+.++|++|++.|+|..+.|++|+|.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t-gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T-GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C-TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e-cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 345566 99999999999987 558999995 99887 2 39999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
|++
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 874
No 138
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=6.6e-19 Score=97.87 Aligned_cols=76 Identities=24% Similarity=0.418 Sum_probs=66.3
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeE-----EEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELES-----VAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-----~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..+.++|||+|||+.+++++|+.+|..||.|.. ...-..+++|||+|.+.++|+.|++ |++..+.|+.|+|.|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 345689999999999999999999999997654 1122468999999999999999999 9999999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 139
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=1.1e-19 Score=96.06 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=64.1
Q ss_pred EEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 34 HLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 34 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
+|||+|||+.+++++|+++|.+||.|..+.+.. .+|+|||+|.+.++|+.|++ +++..+.|+.|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999998863 35899999999999999998 9999999999999986
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=105.78 Aligned_cols=77 Identities=27% Similarity=0.527 Sum_probs=68.4
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeE--------EEEe---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCce
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELES--------VAFQ---PGRSYAFINFKIEEDAIASMKALQGFPLAGNP 97 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 97 (105)
..++++|||+|||+.+++++|+.+|..||.|.. +.+. +.+|+|||+|.+.++|+.|+..||+..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999998754 3333 45789999999999999999999999999999
Q ss_pred EEEEeccC
Q 036554 98 LRIEFAKA 105 (105)
Q Consensus 98 l~v~~~k~ 105 (105)
|+|.|+++
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99999864
No 141
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=9.8e-20 Score=100.37 Aligned_cols=77 Identities=30% Similarity=0.418 Sum_probs=68.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ--PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
...+.++|||+|||..+++++|+.+|..||.|..+ .. ..+|+|||+|.+.++|+.|+..|++..+.|+.|+|.|+++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34567899999999999999999999999988766 22 3468999999999999999999999999999999999864
No 142
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=2.8e-19 Score=100.87 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=66.2
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..+.++|||+|||..+++++|+.+|..||.|..+.+.. .+|+|||+|.+.++|+.|++.+ +..+.|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 44568999999999999999999999999999999874 3689999999999999999975 5889999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=97.25 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=65.4
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCc-EEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-YAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g-~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
...++|||+|||+.+++++|+.+|.+||.|..+.+.+..+ +|||+|.+.++|+.|++ |++..+.|+.|.|.+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 3457999999999999999999999999999883333222 99999999999999999 99999999999999875
No 144
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=97.49 Aligned_cols=69 Identities=17% Similarity=0.399 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCc------CHHHHHHHhhcCCCeeEEEEe----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCc-eEEEE
Q 036554 33 RHLWVGNLSHNI------EEANLTDQFLRFGELESVAFQ----PGRSYAFINFKIEEDAIASMKALQGFPLAGN-PLRIE 101 (105)
Q Consensus 33 ~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~----~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~ 101 (105)
++|||+|||..+ ++++|+.+|.+||.|..+.+. +.+|+|||+|.+.++|+.|++.||+..+.|+ +|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 689999999999 679999999999999999887 3478999999999999999999999999999 88763
No 145
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=3.7e-20 Score=100.96 Aligned_cols=72 Identities=21% Similarity=0.443 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.+ |+.|+..|++..+.|+.|+|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5899999999999999999999999999998863 3689999999999 9999999999999999999999863
No 146
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.3e-19 Score=114.03 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCC--CeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFG--ELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..++|||+||++.+++++|+++|.+|| .|..|.|+. .++||||+|.+.++|+.||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999998863 358999999999999999999999999999999999
Q ss_pred cc
Q 036554 103 AK 104 (105)
Q Consensus 103 ~k 104 (105)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 147
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=95.53 Aligned_cols=70 Identities=19% Similarity=0.375 Sum_probs=64.9
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
++|||+|||+.+++++|+.+|.+||.|..+.+.. ++|+|||+|.+.++|+.|++.++ ..+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999998864 36899999999999999999988 9999999999986
No 148
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.79 E-value=1.3e-18 Score=94.87 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=61.6
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCc--cCCceEEEEecc
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-GRSYAFINFKIEEDAIASMKALQGFP--LAGNPLRIEFAK 104 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~k 104 (105)
..++..+|||+|||+++++++|+++|++||.|..+.++. ++|||||+|.+.++|+. +++.. +.|+.|.|.+++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 455678999999999999999999999999999999874 58999999999999883 56654 458999999986
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
|
T Consensus 83 ~ 83 (89)
T 3d2w_A 83 P 83 (89)
T ss_dssp -
T ss_pred C
Confidence 4
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.2e-18 Score=102.54 Aligned_cols=78 Identities=32% Similarity=0.570 Sum_probs=71.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+..+|||+|||..+++++|+++|.+||.|..+.+... +|+|||+|.+.++|..|+..||+..+.|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3456789999999999999999999999999999988732 5799999999999999999999999999999999
Q ss_pred eccC
Q 036554 102 FAKA 105 (105)
Q Consensus 102 ~~k~ 105 (105)
||++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9985
No 150
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=99.11 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
.....+|||+|||+.+++++|+++|..| .|..+.|+. .+|+|||+|.+.++|+.|+ .+++..+.|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3345799999999999999999999999 898998863 4789999999999999999 59999999999999876
Q ss_pred c
Q 036554 104 K 104 (105)
Q Consensus 104 k 104 (105)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=100.83 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=67.8
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCC---eeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGE---LESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
....++|||+|||+.+++++|+++|..||. |..+.+.. .+|+|||+|.+.++|+.|++ +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345689999999999999999999999988 88888863 46899999999999999999 9999999999999
Q ss_pred Eecc
Q 036554 101 EFAK 104 (105)
Q Consensus 101 ~~~k 104 (105)
.+++
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 152
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=1.3e-18 Score=118.08 Aligned_cols=77 Identities=21% Similarity=0.428 Sum_probs=70.8
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+. .+|||||+|.+.+.|+.||..||+..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999998863 378999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 863
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=1.3e-18 Score=108.07 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=68.3
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..|.++|||+|||+++++++|+++|.+||.|..+.+++ .+|+|||+|.+.++|+.|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999873 358999999999999999999999999999999988
Q ss_pred cc
Q 036554 103 AK 104 (105)
Q Consensus 103 ~k 104 (105)
+.
T Consensus 92 ~~ 93 (213)
T 4f02_A 92 SQ 93 (213)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=2.7e-18 Score=102.22 Aligned_cols=74 Identities=24% Similarity=0.504 Sum_probs=68.9
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCC------cEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR------SYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~------g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
.++|||+|||+.+++++|+++|..||.|..+.+...+ ++|||+|.+.++|+.|++.|++..+.|+.|+|.|+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999887543 8999999999999999999999999999999999864
No 155
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.78 E-value=2.6e-18 Score=110.36 Aligned_cols=77 Identities=38% Similarity=0.617 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCC-cEEEEEeCCHHHHHHHHHHhcCCccC-CceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGR-SYAFINFKIEEDAIASMKALQGFPLA-GNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~k~ 105 (105)
.++.++|||+|||..+++++|+++|..||.|..+.+...+ ++|||+|.+.++|..|++.||+..+. |+.|+|+|+|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 4456899999999999999999999999999999998765 89999999999999999999999999 99999999984
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=1.8e-18 Score=107.44 Aligned_cols=74 Identities=23% Similarity=0.447 Sum_probs=69.1
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..+|||+|||+.+++++|+++|..||.|..+.++. .+|+|||+|.+.++|+.|++.||+..|.|+.|+|.|+++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 46899999999999999999999999999998873 468999999999999999999999999999999999874
No 157
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.77 E-value=2.7e-18 Score=107.69 Aligned_cols=78 Identities=24% Similarity=0.366 Sum_probs=72.1
Q ss_pred CCCCCccEEEEcCCCC-CcCHHHHHHHhhcCCCeeEEEEeCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 27 ANTPPSRHLWVGNLSH-NIEEANLTDQFLRFGELESVAFQPG-RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
...+++++|||+|||+ .+++++|+++|..||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|.|.|++
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3456778999999999 9999999999999999999999855 5999999999999999999999999999999999976
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=4.3e-18 Score=105.29 Aligned_cols=75 Identities=19% Similarity=0.474 Sum_probs=69.9
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+.++|||+|||..+++++|+++|.+||.|..+.+... +++|||+|.+.++|..|++.||+..+.|+.|+|.|++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4579999999999999999999999999999998743 6899999999999999999999999999999999986
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
+
T Consensus 204 ~ 204 (216)
T 2qfj_A 204 T 204 (216)
T ss_dssp S
T ss_pred C
Confidence 4
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=1.2e-18 Score=100.54 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=66.0
Q ss_pred CCCCCccEEEEcCCCCCcCHHHHHHHhhcCCCee--EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 27 ANTPPSRHLWVGNLSHNIEEANLTDQFLRFGELE--SVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
....+..+|||+|||+.+++++|+++|.+| .|. .+.++. .+|+|||+|.+.++|+.|++ +++..+.|+.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 344556899999999999999999999999 676 788763 47999999999999999999 577999999999
Q ss_pred EEecc
Q 036554 100 IEFAK 104 (105)
Q Consensus 100 v~~~k 104 (105)
|.++.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 160
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.77 E-value=5.7e-18 Score=108.07 Aligned_cols=77 Identities=32% Similarity=0.505 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..+.++|||+|||+++++++|+.+|..||.|..+.+.+.+|+|||+|.+.++|..|+..|++..+.|+.|.|.|+.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999763
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=4.2e-18 Score=101.67 Aligned_cols=75 Identities=23% Similarity=0.482 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+.++|||+|||+.+++++|+++|.+||.|..+.+.. .+|+|||+|.+.++|+.|++.|++..+.|+.|.|.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 458999999999999999999999999999998863 35899999999999999999999999999999999986
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 162
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-20 Score=106.04 Aligned_cols=77 Identities=21% Similarity=0.419 Sum_probs=69.5
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeE--------EEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELES--------VAFQP------GRSYAFINFKIEEDAIASMKALQGFPLA 94 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 94 (105)
..+.++|||+|||..+++++|+.+|.+||.|.. +.+.. .+++|||+|.+.++|+.|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999987 66653 3689999999999999999999999999
Q ss_pred CceEEEEeccC
Q 036554 95 GNPLRIEFAKA 105 (105)
Q Consensus 95 g~~l~v~~~k~ 105 (105)
|+.|+|.|+++
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999864
No 163
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=3e-19 Score=104.70 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=65.4
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
.....++|||+|||+++++++|+++|.+|| +..+.++. .+|+|||+|.+.++|+.|+ .+++..+.++.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445568999999999999999999999999 67888863 4789999999999999999 6899999999999988
Q ss_pred cc
Q 036554 103 AK 104 (105)
Q Consensus 103 ~k 104 (105)
+.
T Consensus 120 a~ 121 (139)
T 2hgn_A 120 NS 121 (139)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 164
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.76 E-value=7.2e-18 Score=108.30 Aligned_cols=77 Identities=31% Similarity=0.641 Sum_probs=70.8
Q ss_pred CCCCccEEEEcCCCCCcCHHHHH----HHhhcCCCeeEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLT----DQFLRFGELESVAFQP---GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~---~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
..++.++|||+|||+.+++++|+ .+|..||.|..+.+.+ .+++|||+|.+.++|+.|++.||+..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999976 8999999999998874 5789999999999999999999999999999999
Q ss_pred Eecc
Q 036554 101 EFAK 104 (105)
Q Consensus 101 ~~~k 104 (105)
.|++
T Consensus 85 ~~a~ 88 (282)
T 3pgw_A 85 QYAK 88 (282)
T ss_pred EEec
Confidence 9986
No 165
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=102.29 Aligned_cols=77 Identities=27% Similarity=0.461 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCC-CeeEEEEe-CCCcEEEEEeCCHHHHHHHHHHhcCCccC-CceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFG-ELESVAFQ-PGRSYAFINFKIEEDAIASMKALQGFPLA-GNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~k~ 105 (105)
.+++++|||+|||..+++++|+++|.+|| .|..+.+. ..+++|||+|.+.++|..|+..|++..+. |+.|+|.|++|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 45688999999999999999999999999 99999985 47899999999999999999999999999 99999999985
No 166
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.76 E-value=1e-17 Score=102.37 Aligned_cols=77 Identities=18% Similarity=0.401 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..+.++|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|+|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356789999999999999999999999999999988743 68999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
++|
T Consensus 191 a~~ 193 (198)
T 2yh0_A 191 ASV 193 (198)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.76 E-value=1.5e-17 Score=104.37 Aligned_cols=77 Identities=27% Similarity=0.461 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCC-CeeEEEEe-CCCcEEEEEeCCHHHHHHHHHHhcCCccC-CceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFG-ELESVAFQ-PGRSYAFINFKIEEDAIASMKALQGFPLA-GNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~k~ 105 (105)
.++.++|||+|||..+++++|+++|.+|| .|..+.+. +.+++|||+|.+.++|..|++.|++..+. |+.|+|.|++|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 45678999999999999999999999999 99999985 47899999999999999999999999999 99999999985
No 168
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=94.92 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=62.5
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCC--ccCCceEEEEeccC
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-GRSYAFINFKIEEDAIASMKALQGF--PLAGNPLRIEFAKA 105 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~k~ 105 (105)
.+.++|||+|||+.+++++|+.+|.+||.|..+.+.. .+++|||+|.+.++|+.+ ++. .+.++.|.|.++++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCC
Confidence 3568999999999999999999999999999999874 489999999999999753 444 45799999999864
No 169
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=1.2e-18 Score=91.92 Aligned_cols=69 Identities=30% Similarity=0.466 Sum_probs=63.4
Q ss_pred EEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 34 HLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 34 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
+|||+|||+.+++++|+.+|++||.|..+.+.. .+++|||+|.+.++|+.|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999999999999998863 36899999999999999999 5889999999999875
No 170
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=8.5e-19 Score=97.59 Aligned_cols=74 Identities=19% Similarity=0.421 Sum_probs=66.9
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..+.++|||+|||+.+++++|+.+|..||.|..+.+.. .+|+|||+|.+.++|+.|++ ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34568999999999999999999999999999998874 36899999999999999999 889999999998886
Q ss_pred c
Q 036554 104 K 104 (105)
Q Consensus 104 k 104 (105)
.
T Consensus 84 ~ 84 (102)
T 2xs2_A 84 I 84 (102)
T ss_dssp E
T ss_pred C
Confidence 4
No 171
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-17 Score=92.42 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCCCccEEEEcCCCCCc-----------CHHHHHHHhhcCCCeeEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 036554 28 NTPPSRHLWVGNLSHNI-----------EEANLTDQFLRFGELESVAFQ--PGRSYAFINFKIEEDAIASMKALQGFPLA 94 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~-----------~~~~l~~~f~~~g~i~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 94 (105)
...++++|+|.||.... .+++|+++|.+||.|..+.+. ..+|+|||+|.+.++|+.|+..||+..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34567899999994432 257999999999999999775 34799999999999999999999999999
Q ss_pred CceEEEEeccC
Q 036554 95 GNPLRIEFAKA 105 (105)
Q Consensus 95 g~~l~v~~~k~ 105 (105)
|+.|+|.|+++
T Consensus 91 gr~l~v~~a~~ 101 (112)
T 2dit_A 91 GRQITAQAWDG 101 (112)
T ss_dssp TEECEEEECCS
T ss_pred CcEEEEEEeCC
Confidence 99999999764
No 172
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=1.5e-17 Score=99.71 Aligned_cols=74 Identities=20% Similarity=0.444 Sum_probs=68.9
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
....+|||+|||+.+++++|+++|.+||.|..+.+... +|+|||+|.+.++|+.|++.||+..+.|+.|.|+||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999988743 589999999999999999999999999999999997
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-17 Score=99.03 Aligned_cols=72 Identities=29% Similarity=0.482 Sum_probs=67.3
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
++|||+|||+.+++++|+++|.+||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 5899999999999999999999999999998863 35899999999999999999999999999999999875
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=2.5e-17 Score=100.54 Aligned_cols=76 Identities=22% Similarity=0.425 Sum_probs=68.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+.++|||+|||+++++++|+++|..||.|..+.++. .+|+|||+|.+.++|+.|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999998874 257999999999999999985 8899999999999
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
++.
T Consensus 88 ~~~ 90 (196)
T 1l3k_A 88 RAV 90 (196)
T ss_dssp ECC
T ss_pred ccc
Confidence 875
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=7.9e-17 Score=96.09 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=68.5
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCC--ceEEE
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAG--NPLRI 100 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v 100 (105)
..+..+|||+|||..+++++|+++|.+||.|..+.+... +++|||+|.+.++|..|++.||+..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 345689999999999999999999999999999988743 4899999999999999999999999987 99999
Q ss_pred Eec
Q 036554 101 EFA 103 (105)
Q Consensus 101 ~~~ 103 (105)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=2.2e-17 Score=98.90 Aligned_cols=73 Identities=27% Similarity=0.560 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcC----C-------CeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRF----G-------ELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
+.++|||+|||+.+++++|+++|.+| | .|..+.+.+.+++|||+|.+.++|+.|+ .|++..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 56899999999999999999999999 7 7888888888999999999999999999 7999999999999
Q ss_pred EEecc
Q 036554 100 IEFAK 104 (105)
Q Consensus 100 v~~~k 104 (105)
|.+++
T Consensus 82 v~~~~ 86 (172)
T 2g4b_A 82 IRRPH 86 (172)
T ss_dssp EECCS
T ss_pred ecCCc
Confidence 99875
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=1.1e-17 Score=99.75 Aligned_cols=74 Identities=11% Similarity=0.317 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+..+|||+|||+.+++++|+++|.+||.|..+.+.. .+|+|||+|.+.++|+.|++ +++..+.|+.|+|.|++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 356899999999999999999999999999998863 35899999999999999998 89999999999999997
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
|
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=4.3e-17 Score=97.73 Aligned_cols=75 Identities=27% Similarity=0.504 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccC---CceEEEE
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLA---GNPLRIE 101 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~ 101 (105)
.+.++|||+|||+.+++++|+++|.+||.|..+.+... +++|||+|.+.++|..|++.||+..+. +++|+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 35689999999999999999999999999999988743 689999999999999999999998766 4899999
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.73 E-value=3e-17 Score=98.71 Aligned_cols=76 Identities=30% Similarity=0.420 Sum_probs=68.6
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEeccC
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ--PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAKA 105 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k~ 105 (105)
..+.++|||+|||+.+++++|+++|.+||.|..+ .. ..+++|||+|.+.++|..|++.|++..+.|+.|+|.|++|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 3456899999999999999999999999998777 22 3578999999999999999999999999999999999875
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=101.18 Aligned_cols=73 Identities=26% Similarity=0.408 Sum_probs=68.8
Q ss_pred ccEEEEcCCCC-CcCHHHHHHHhhcCCCeeEEEEeCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 32 SRHLWVGNLSH-NIEEANLTDQFLRFGELESVAFQPG-RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 32 ~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+++|||+|||+ .+++++|+++|..||.|..+.+... +++|||+|.+.++|+.|++.|++..+.|+.|.|.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 9999999999999999999998854 6899999999999999999999999999999999986
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=6.6e-17 Score=99.96 Aligned_cols=74 Identities=18% Similarity=0.449 Sum_probs=67.5
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+.++|||+|||.++++++|+++|..||.|..+.+.. .+++|||+|.+.++|+.|++.|++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457999999999999999999999999999998863 47899999999999999999999999999999998864
No 182
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.2e-18 Score=97.56 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCe----eEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGEL----ESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
.+..+|||+|||+.+++++|+++|.+||.| ..+.++. .+|+|||+|.+.++|+.|++. ++..+.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999875 5677652 368999999999999999995 889999999998
Q ss_pred Eecc
Q 036554 101 EFAK 104 (105)
Q Consensus 101 ~~~k 104 (105)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7764
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=9.6e-17 Score=89.94 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=66.2
Q ss_pred CCccEEEEcCCCC-----CcCHHHHHHHhhcCCCeeEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCce
Q 036554 30 PPSRHLWVGNLSH-----NIEEANLTDQFLRFGELESVAFQP-------GRSYAFINFKIEEDAIASMKALQGFPLAGNP 97 (105)
Q Consensus 30 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~i~~~~~~~-------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 97 (105)
.++++|+|.|+.. +-.+++|++.|++||.|..+.+.. .+|++||+|.+.++|+.|++.|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999863 236899999999999999998863 3689999999999999999999999999999
Q ss_pred EEEEecc
Q 036554 98 LRIEFAK 104 (105)
Q Consensus 98 l~v~~~k 104 (105)
|.|.|+.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999975
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=5.2e-17 Score=97.36 Aligned_cols=74 Identities=18% Similarity=0.431 Sum_probs=65.4
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe--------CCCcEEEEEeCCHHHHHHHHHHhcCCccC---CceEE
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ--------PGRSYAFINFKIEEDAIASMKALQGFPLA---GNPLR 99 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--------~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 99 (105)
+.++|||+|||+.+++++|+++|.+||.|..+.++ +.+++|||+|.+.++|+.|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999886 34689999999999999999999998765 56777
Q ss_pred EEecc
Q 036554 100 IEFAK 104 (105)
Q Consensus 100 v~~~k 104 (105)
+.+++
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77654
No 185
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.72 E-value=5.4e-17 Score=107.11 Aligned_cols=81 Identities=20% Similarity=0.428 Sum_probs=70.9
Q ss_pred CCCCCCCCccEEEEcC--CCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccC---Cc--
Q 036554 24 GGRANTPPSRHLWVGN--LSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLA---GN-- 96 (105)
Q Consensus 24 ~~~~~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~-- 96 (105)
+.....+|+.+|||+| |+..+++++|+++|++||.|..+.+..+|+||||+|.+.++|+.|++.|||..+. |+
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3444577889999999 5789999999999999999999999889999999999999999999999998763 44
Q ss_pred eEEEEecc
Q 036554 97 PLRIEFAK 104 (105)
Q Consensus 97 ~l~v~~~k 104 (105)
.|.|.|++
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 67888864
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=92.28 Aligned_cols=68 Identities=34% Similarity=0.539 Sum_probs=55.9
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEe---------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQ---------PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~---------~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
...++|||+|||+.+++++|+++|.+||.|. +.++ +.+|||||+|.+.++|+.|++.|+. ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3468999999999999999999999999998 6664 2378999999999999999998832 34444433
No 187
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=3.7e-17 Score=99.90 Aligned_cols=73 Identities=27% Similarity=0.547 Sum_probs=67.3
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcC----C-------CeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRF----G-------ELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
..++|||+|||+.+++++|+++|..| | .|..+.+.+.+++|||+|.+.++|+.|+ .|++..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 5 6788888888999999999999999999 7999999999999
Q ss_pred EEecc
Q 036554 100 IEFAK 104 (105)
Q Consensus 100 v~~~k 104 (105)
|.+++
T Consensus 82 v~~~~ 86 (198)
T 2yh0_A 82 IRRPH 86 (198)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99875
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=7.7e-17 Score=98.34 Aligned_cols=75 Identities=20% Similarity=0.413 Sum_probs=67.2
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
.+.++|||+|||+.+++++|+++|..||.|..+.+.. .+|+|||+|.+.++|..|+.. ++..+.|+.|.|.|+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4558999999999999999999999999999998873 268999999999999999985 789999999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
.+
T Consensus 181 ~~ 182 (196)
T 1l3k_A 181 LS 182 (196)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=1.9e-16 Score=101.79 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+.++|||+|||+.+++++|+++|..|| |..+.+.+.+|+|||+|.+.++|+.|++.|++..+.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 458999999999999999999999999 9999998889999999999999999999999999999999999864
No 190
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=1.5e-16 Score=94.62 Aligned_cols=74 Identities=24% Similarity=0.474 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC------CcEEEEEeCCHHHHHHHHHHhcCCccCCc--eEEEE
Q 036554 30 PPSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG------RSYAFINFKIEEDAIASMKALQGFPLAGN--PLRIE 101 (105)
Q Consensus 30 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~--~l~v~ 101 (105)
.+..+|||+|||..+++++|+.+|.+||.|..+.+... +++|||+|.+.++|..|++.||+..+.|+ +|.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35678999999999999999999999999999988642 58999999999999999999999999986 48998
Q ss_pred ec
Q 036554 102 FA 103 (105)
Q Consensus 102 ~~ 103 (105)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=8.3e-17 Score=98.91 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=65.5
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
.++|||+|||+.+++++|+.+|.+||.|..+.+.+ .+|+|||+|.+.++|+.|++.+ +..+.|+.|.|.|++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 47999999999999999999999999999998873 4689999999999999999855 568999999999976
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=1.6e-16 Score=102.15 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCCc-CHHHHHHHhhcCCCeeEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 29 TPPSRHLWVGNLSHNI-EEANLTDQFLRFGELESVAFQPG-----RSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
..+..+|||+|||+.+ ++++|+.+|..||.|..+.+... +++|||+|.+.++|..|+..|++..+.|+.|+|.|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3456899999999995 99999999999999999988753 68999999999999999999999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 261 a~~ 263 (284)
T 3smz_A 261 CAP 263 (284)
T ss_dssp CCS
T ss_pred ecC
Confidence 875
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=2.4e-16 Score=94.71 Aligned_cols=77 Identities=23% Similarity=0.405 Sum_probs=66.5
Q ss_pred CCCCccEEEEcCCCCCcCHHHHHHHhhcCCCe-----eEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEe
Q 036554 28 NTPPSRHLWVGNLSHNIEEANLTDQFLRFGEL-----ESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEF 102 (105)
Q Consensus 28 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-----~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 102 (105)
...+.++|||+|||+.+++++|+++|.+||.+ ........+|+|||+|.+.++|+.|++ |++..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 45567899999999999999999999999864 333334578999999999999999995 999999999999999
Q ss_pred ccC
Q 036554 103 AKA 105 (105)
Q Consensus 103 ~k~ 105 (105)
+++
T Consensus 88 ~~~ 90 (175)
T 1fje_B 88 PKG 90 (175)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=1.9e-16 Score=102.08 Aligned_cols=76 Identities=22% Similarity=0.416 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCCCC-cCHHHHHHHhhcCCCeeEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 29 TPPSRHLWVGNLSHN-IEEANLTDQFLRFGELESVAFQP-------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~-------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
..+.++|||+|||+. +++++|+.+|.+||.|..+.+.. .+++|||+|.+.++|..|+ .||+..+.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456689999999999 99999999999999999998863 3689999999999999999 99999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
.|+++
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=2.4e-16 Score=93.99 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=64.7
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
++++|||+|||+.+++++|+++|++||.|..+.+.. ++|+|||+|.+.++|+.|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 568999999999999999999999999999999874 35899999999999999998 4568889999888865
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.9e-16 Score=97.28 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=65.8
Q ss_pred CCCccEEEEcCCCCCcCHHHHHHHhhcCCCe--eEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCc----eE
Q 036554 29 TPPSRHLWVGNLSHNIEEANLTDQFLRFGEL--ESVAFQPG----RSYAFINFKIEEDAIASMKALQGFPLAGN----PL 98 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i--~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~----~l 98 (105)
.+++++|||+|||+.+++++|+++|.+||.| ..+++... +++|||+|.+.++|..|+..||+..+.|. ++
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 3567899999999999999999999999998 88888643 48999999999999999999999998875 56
Q ss_pred EEEec
Q 036554 99 RIEFA 103 (105)
Q Consensus 99 ~v~~~ 103 (105)
.|.|+
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 197
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.2e-16 Score=90.66 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=61.9
Q ss_pred cEEEEcCC----CCCcCHHHHHHHhhcCCCeeEEEEeC------CCcEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 036554 33 RHLWVGNL----SHNIEEANLTDQFLRFGELESVAFQP------GRSYAFINFKI----EED----AIASMK--ALQGFP 92 (105)
Q Consensus 33 ~~l~v~nl----~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fv~f~~----~~~----a~~a~~--~l~~~~ 92 (105)
..|||+|| |+.+++++|+.+|++||+|.++.+.. ++||+||+|.+ ... |..|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999998872 47999999996 322 777877 689999
Q ss_pred cCCceEEEEecc
Q 036554 93 LAGNPLRIEFAK 104 (105)
Q Consensus 93 ~~g~~l~v~~~k 104 (105)
|.|+.|+|.+.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998854
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=1.2e-15 Score=98.42 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCC-CeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFG-ELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
..++|||+|||+.+++++|+.+|..|| .|..+.+.. .+++|||+|.+.++|..|+..|++..+.|+.|.|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 468999999999999999999999999 999998864 57899999999999999999999999999999999976
Q ss_pred C
Q 036554 105 A 105 (105)
Q Consensus 105 ~ 105 (105)
|
T Consensus 196 ~ 196 (292)
T 2ghp_A 196 P 196 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=2.2e-15 Score=84.37 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=64.6
Q ss_pred CCccEEEEcCCC--CCc--------CHHHHHHHhhcCCCeeEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhcCC
Q 036554 30 PPSRHLWVGNLS--HNI--------EEANLTDQFLRFGELESVAFQP--------GRSYAFINFKIEEDAIASMKALQGF 91 (105)
Q Consensus 30 ~~~~~l~v~nl~--~~~--------~~~~l~~~f~~~g~i~~~~~~~--------~~g~~fv~f~~~~~a~~a~~~l~~~ 91 (105)
.|++.|.|.|+- ... .+++|++.|++||.|..+.+.+ .+|++||+|.+.++|+.|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 467899999973 233 2368999999999999999873 3689999999999999999999999
Q ss_pred ccCCceEEEEecc
Q 036554 92 PLAGNPLRIEFAK 104 (105)
Q Consensus 92 ~~~g~~l~v~~~k 104 (105)
.+.|+.|+|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999863
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-14 Score=79.85 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=60.2
Q ss_pred ccEEEEcCCC-------CCcCHHHHHHHhhcCCCeeEEEEe-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEec
Q 036554 32 SRHLWVGNLS-------HNIEEANLTDQFLRFGELESVAFQ-PGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFA 103 (105)
Q Consensus 32 ~~~l~v~nl~-------~~~~~~~l~~~f~~~g~i~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 103 (105)
..+|-|.-.. ..+++++|+.+|.+||.|..+.++ +.+|||||+|.+.++|+.|++.++ .+.+++|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 4566666432 458999999999999999999987 568999999999999999999744 467999999998
Q ss_pred cC
Q 036554 104 KA 105 (105)
Q Consensus 104 k~ 105 (105)
++
T Consensus 88 ~~ 89 (100)
T 2d9o_A 88 EG 89 (100)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=9.3e-15 Score=93.20 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=65.4
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcC-CccC---CceEEEE
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQG-FPLA---GNPLRIE 101 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~-~~~~---g~~l~v~ 101 (105)
+..+|||+|||+.+++++|+.+|..||.|..+.+.. .+|+|||+|.+.++|..|+..|++ ..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 467999999999999999999999999999998873 368999999999999999999954 4444 8999999
Q ss_pred ecc
Q 036554 102 FAK 104 (105)
Q Consensus 102 ~~k 104 (105)
+++
T Consensus 175 ~~~ 177 (261)
T 3sde_A 175 PME 177 (261)
T ss_dssp ECC
T ss_pred ecc
Confidence 875
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=1.8e-15 Score=84.55 Aligned_cols=67 Identities=19% Similarity=0.425 Sum_probs=57.1
Q ss_pred EcCCCCCcCHHHHHHHh------------hcCCCeeEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCceEE
Q 036554 37 VGNLSHNIEEANLTDQF------------LRFGELESVAFQP-----GRSYAFINFKIEEDAIASMKALQGFPLAGNPLR 99 (105)
Q Consensus 37 v~nl~~~~~~~~l~~~f------------~~~g~i~~~~~~~-----~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 99 (105)
+.+|++.+++++|++.| ++||.|..+.+.+ .+|+|||+|.+.++|+.|++.|||..+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 44566666776666555 9999999999974 379999999999999999999999999999999
Q ss_pred EEec
Q 036554 100 IEFA 103 (105)
Q Consensus 100 v~~~ 103 (105)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=1.4e-14 Score=82.58 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=64.5
Q ss_pred CCccEEEEcCCCC--Cc---CHHHHHHHhhcCCCeeEEEEeCC----------CcEEEEEeCCHHHHHHHHHHhcCCccC
Q 036554 30 PPSRHLWVGNLSH--NI---EEANLTDQFLRFGELESVAFQPG----------RSYAFINFKIEEDAIASMKALQGFPLA 94 (105)
Q Consensus 30 ~~~~~l~v~nl~~--~~---~~~~l~~~f~~~g~i~~~~~~~~----------~g~~fv~f~~~~~a~~a~~~l~~~~~~ 94 (105)
+++++|+|.|+-. ++ -+++|++.|.+||.|..+.+.+. +|++||+|.+.++|..|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3688999999742 22 36899999999999999988632 389999999999999999999999999
Q ss_pred CceEEEEecc
Q 036554 95 GNPLRIEFAK 104 (105)
Q Consensus 95 g~~l~v~~~k 104 (105)
|+.|+|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999864
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.57 E-value=4e-14 Score=80.26 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=64.2
Q ss_pred CCCccEEEEcCCCCCc----------CHHHHHHHhhcCCCeeEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCc
Q 036554 29 TPPSRHLWVGNLSHNI----------EEANLTDQFLRFGELESVAFQPG--RSYAFINFKIEEDAIASMKALQGFPLAGN 96 (105)
Q Consensus 29 ~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~i~~~~~~~~--~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 96 (105)
..+++.|.+.|+-... -+++|++.|++||.|..+.+.+. +|++||+|.+.++|+.|++.|||..+.|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3467889999863221 23578999999999999988753 69999999999999999999999999999
Q ss_pred eEEEEecc
Q 036554 97 PLRIEFAK 104 (105)
Q Consensus 97 ~l~v~~~k 104 (105)
.|+|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-12 Score=74.58 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=67.7
Q ss_pred CCCCCccEEEEcCCCCC-cCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCC-HHHHHHHHHHhc--CCccCCceEEEEe
Q 036554 27 ANTPPSRHLWVGNLSHN-IEEANLTDQFLRFGELESVAFQPGRSYAFINFKI-EEDAIASMKALQ--GFPLAGNPLRIEF 102 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--~~~~~g~~l~v~~ 102 (105)
...++++.|+|+||++. ++.++|+++|.+||+|..|.+....-.|||.|.+ ..+|..++..++ +..|.+..+++..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 34677899999999999 9999999999999999999999888899999999 899999999995 5678887777754
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=9.5e-13 Score=71.16 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=61.5
Q ss_pred CCCccEEEEcCCCC----Cc-CH---HHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEE
Q 036554 29 TPPSRHLWVGNLSH----NI-EE---ANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRI 100 (105)
Q Consensus 29 ~~~~~~l~v~nl~~----~~-~~---~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 100 (105)
.||..+|+|.-.+. .+ .+ .+|...|.+||.|..+++... .+||+|.+.++|.+|++ |+|..+.|+.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 45667888876552 23 32 568899999999999999876 48999999999999999 9999999999999
Q ss_pred EeccC
Q 036554 101 EFAKA 105 (105)
Q Consensus 101 ~~~k~ 105 (105)
++++|
T Consensus 81 ~lkt~ 85 (91)
T 2dnr_A 81 ALKSP 85 (91)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99875
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.6e-11 Score=65.90 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=62.2
Q ss_pred CCCCCccEEEEcCCCCC------cCH---HHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCce
Q 036554 27 ANTPPSRHLWVGNLSHN------IEE---ANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNP 97 (105)
Q Consensus 27 ~~~~~~~~l~v~nl~~~------~~~---~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 97 (105)
...||..+|+|.-++.. ..+ .+|.+.|..||.|..+++...+ +||+|.+.+.|.+|++ |+|..+.|+.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 34567788999877632 232 4678899999999999999764 9999999999999999 9999999999
Q ss_pred EEEEecc
Q 036554 98 LRIEFAK 104 (105)
Q Consensus 98 l~v~~~k 104 (105)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.12 E-value=2.7e-10 Score=70.90 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=59.5
Q ss_pred ccEEEEcCCC-----CCcCHHHHHHHhhcCCCeeEEEEe----------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCc
Q 036554 32 SRHLWVGNLS-----HNIEEANLTDQFLRFGELESVAFQ----------PGRSYAFINFKIEEDAIASMKALQGFPLAGN 96 (105)
Q Consensus 32 ~~~l~v~nl~-----~~~~~~~l~~~f~~~g~i~~~~~~----------~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 96 (105)
+..+.+.|+- ..-.+++|+..|.+||.|..+.+. ..+|++||+|.+.++|+.|++.|+|..+.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555532 123457899999999999999886 3468999999999999999999999999999
Q ss_pred eEEEEec
Q 036554 97 PLRIEFA 103 (105)
Q Consensus 97 ~l~v~~~ 103 (105)
.|.+.|+
T Consensus 204 ~i~~~~~ 210 (222)
T 3dxb_A 204 KVVAEVY 210 (222)
T ss_dssp BCEEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=2.2e-09 Score=59.64 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=65.9
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcC-----CCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRF-----GELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
..++|-+-|||+.+++..|+.++.++ |.+..+.+...-+-|+|+|.+...|-.|.=.|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 35789999999999999999999999 999999998888999999999999999888899999999999875
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=6.3e-07 Score=49.43 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=62.2
Q ss_pred cEEEEcCCCCCc-C----HHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 33 RHLWVGNLSHNI-E----EANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 33 ~~l~v~nl~~~~-~----~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
.+|+|.||+..+ . .+.++.+|..|+++......++-.-..|.|.+.++|.+|-..||+..+.|+.++|-|++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 579999998754 2 25779999999998888888776677899999999999999999999999999998875
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=5.1e-05 Score=41.72 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=56.2
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcC-----CCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEE
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRF-----GELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIE 101 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 101 (105)
...+|.|.|||+.+.++.|.-+|++- |.|..+.... +-|+|+|.+...|++.++. ..+.+++..|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 34789999999999999999999972 3578877766 7999999999999999882 3567888777774
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.27 E-value=2.6e-05 Score=42.43 Aligned_cols=56 Identities=16% Similarity=0.349 Sum_probs=45.3
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ 89 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
..+.++| ..|..+...+|..+|++||.| .|+++.. -.|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 3466777 999999999999999999953 3444432 399999999999999999763
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.99 E-value=5.7e-05 Score=40.77 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=52.4
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccC
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG--------RSYAFINFKIEEDAIASMKALQGFPLA 94 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~--------~g~~fv~f~~~~~a~~a~~~l~~~~~~ 94 (105)
.+|.|.+||+.++++++.+.+.....+.......+ -.-||+.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47889999999999999999999887766665432 258999999999999999999998655
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=8e-05 Score=42.05 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=56.3
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCC-ceEEEE
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAG-NPLRIE 101 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~ 101 (105)
..+-|.|-+.|+.. .+.+...|.+||.|.+.......+.-.|.|.++.+|++||. .||..+.+ ..|-|.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 35678888988874 57788899999999988776567899999999999999999 69988875 444443
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.83 E-value=3.3e-05 Score=42.16 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=45.4
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhc
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ 89 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
.+.++| +.|..+...+|..+|++||. ..|+++.. -.|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 356677 99999999999999999994 45555542 389999999999999999774
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.38 E-value=0.00049 Score=37.46 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=48.3
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccC
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPG--------RSYAFINFKIEEDAIASMKALQGFPLA 94 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~--------~g~~fv~f~~~~~a~~a~~~l~~~~~~ 94 (105)
+-+|.|..||+.++++++.+.+...-.+.......+ -.-|||.|.+.++.....+.++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 458999999999999998888776544433222221 257899999999999999999997654
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.37 E-value=0.00015 Score=49.78 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=41.9
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCc-EEEEEeCCHHHHHHHHH
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRS-YAFINFKIEEDAIASMK 86 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g-~~fv~f~~~~~a~~a~~ 86 (105)
.+.|+|. .|..+++.+|.+.|++||.|..+.+.+.+| |+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4789997 788999999999999999999998887665 99999999988886654
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.30 E-value=0.00025 Score=40.60 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=51.5
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeE-EEEe-------------------CCCcEEEEEeCCHHHHHHHHHHhcCCc
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELES-VAFQ-------------------PGRSYAFINFKIEEDAIASMKALQGFP 92 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~-------------------~~~g~~fv~f~~~~~a~~a~~~l~~~~ 92 (105)
.-|.|-+.|+.. ...+...|++||.|.+ .... ...+...|+|.+...|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 456777887654 4677788999999865 2111 124578999999999999999 69999
Q ss_pred cCCceEEEEec
Q 036554 93 LAGNPLRIEFA 103 (105)
Q Consensus 93 ~~g~~l~v~~~ 103 (105)
+.|..|-|...
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987666553
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.49 E-value=0.0011 Score=38.42 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=33.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHh-cCCccCCceEEEEecc
Q 036554 66 PGRSYAFINFKIEEDAIASMKAL-QGFPLAGNPLRIEFAK 104 (105)
Q Consensus 66 ~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~k 104 (105)
+-+|+++++|.+.+.|+.|++.+ |+..++| .|.+.++.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 34689999999999999999999 9999999 89998764
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.55 E-value=0.15 Score=35.45 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=45.1
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhc
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ 89 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
...++|+ +|..+...+|.+.|+.||. ..|.++. ...|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wid-dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECS-SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEc-CCeEEEEECCHHHHHHHHHHHH
Confidence 4567776 8888899999999999995 4555554 3489999999999999999885
No 221
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.97 E-value=0.02 Score=33.15 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=22.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhcC
Q 036554 66 PGRSYAFINFKIEEDAIASMKALQG 90 (105)
Q Consensus 66 ~~~g~~fv~f~~~~~a~~a~~~l~~ 90 (105)
+.+|++||+|.+.+.|+.|++.+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcc
Confidence 4579999999999999999988764
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.72 E-value=0.49 Score=23.92 Aligned_cols=68 Identities=9% Similarity=0.257 Sum_probs=41.3
Q ss_pred EEEEcC-CCCCcCHHHHHHHhhcCCC-----eeEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCceEEEEecc
Q 036554 34 HLWVGN-LSHNIEEANLTDQFLRFGE-----LESVAFQPGRSYAFINFKIEEDAIASMKALQGFPLAGNPLRIEFAK 104 (105)
Q Consensus 34 ~l~v~n-l~~~~~~~~l~~~f~~~g~-----i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~k 104 (105)
+++|.. -...+...+|..++..-+. |-.+.+... +.||+-.. ..+..+++.|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 355542 2334556677777665443 556666544 88888775 45677888899999999999988775
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=61.66 E-value=16 Score=19.41 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=45.1
Q ss_pred CccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHHHhc
Q 036554 31 PSRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMKALQ 89 (105)
Q Consensus 31 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 89 (105)
..+-+-|-|+|..+-..++.-.....|---.|..+ -|.|.+.|.+.++...|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHH
Confidence 45778888999999888887777777765555555 3689999999999999998774
No 224
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=60.33 E-value=12 Score=17.48 Aligned_cols=45 Identities=7% Similarity=0.081 Sum_probs=35.5
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCC
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKI 77 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~ 77 (105)
.++.|.++.-..-...++..+.....+..+.+....+.+.|.|..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 48 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHG 48 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECC
Confidence 357788887776678889999988888888887667788888853
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=56.08 E-value=16 Score=17.49 Aligned_cols=54 Identities=11% Similarity=-0.027 Sum_probs=40.7
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCCHHHHHHHHH
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKIEEDAIASMK 86 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~~~~a~~a~~ 86 (105)
..++.|.++.-.--...|+..+.. ..+..+.+....+.+.|.|.+.+....+++
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~ 59 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVE 59 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHH
Confidence 357889898887778899999999 778888877666678888874455555555
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=50.47 E-value=20 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.3
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEE
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESV 62 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~ 62 (105)
..+.|+|+|+.++...|..++.. ..+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 46789999999999999999877 555443
No 227
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=50.03 E-value=11 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.040 Sum_probs=23.8
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEE
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVA 63 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~ 63 (105)
....|+|||+.++...|..++.....+....
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~ 145 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQH 145 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEE
Confidence 4578999999999999999987644454443
No 228
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=38.66 E-value=13 Score=23.25 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=23.0
Q ss_pred EEEEcCCCCCcCHHHHHHHhhcCCCeeEEE
Q 036554 34 HLWVGNLSHNIEEANLTDQFLRFGELESVA 63 (105)
Q Consensus 34 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~ 63 (105)
...|+|+|+.++...|..++.....+....
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~ 127 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMH 127 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEE
Confidence 347999999999999999987655554443
No 229
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=38.46 E-value=31 Score=21.49 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.1
Q ss_pred EEEEcCCCCCcCHHHHHHHhhcC
Q 036554 34 HLWVGNLSHNIEEANLTDQFLRF 56 (105)
Q Consensus 34 ~l~v~nl~~~~~~~~l~~~f~~~ 56 (105)
.+.|+|+|+.++...+..++...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTG
T ss_pred eEEEECCCCCccHHHHHHHHhcC
Confidence 57899999999988888877643
No 230
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=35.21 E-value=29 Score=21.49 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCe
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGEL 59 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i 59 (105)
..+.|+|+|+.++...+..++.....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCC
Confidence 357899999999999888888754333
No 231
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=30.67 E-value=43 Score=15.09 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=33.7
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCC
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKI 77 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~ 77 (105)
.++.|.++.-..-...++..+.....+..+.+....+.+.|.|..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 49 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHG 49 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC-
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECC
Confidence 356777877665567788888888888888887666788888874
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=30.42 E-value=15 Score=21.12 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=14.7
Q ss_pred HHHHHhhcCCCeeEEEEeCCCcEEEEEeC
Q 036554 48 NLTDQFLRFGELESVAFQPGRSYAFINFK 76 (105)
Q Consensus 48 ~l~~~f~~~g~i~~~~~~~~~g~~fv~f~ 76 (105)
++.+++...|.|.+. ...+||+||+..
T Consensus 3 ~~~~l~~~~G~Vkwf--n~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWF--NVRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEE--ETTTTEEEEEEE
T ss_pred cccccccceeEEEEE--ECCCCeeEEeeC
Confidence 334455555655543 345789998864
No 233
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=29.90 E-value=49 Score=15.46 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeC----CHHHHHHHHHH
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFK----IEEDAIASMKA 87 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~----~~~~a~~a~~~ 87 (105)
.++.|.++.-..-...++..+.....+..+.+....+.+.|.|. +.+....+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888776666788999998888888877765668888885 34555555553
No 234
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=28.67 E-value=48 Score=14.94 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=33.2
Q ss_pred EEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeCC
Q 036554 34 HLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFKI 77 (105)
Q Consensus 34 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~~ 77 (105)
.+.|.++.-..-...++..+.....+..+.+....+.+.|.|..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 46 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVP 46 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECC
Confidence 46677777665667788888888778888887666788888864
No 235
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=28.10 E-value=54 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.2
Q ss_pred cEEEEcCCCCCcCHHHHHHHhhc
Q 036554 33 RHLWVGNLSHNIEEANLTDQFLR 55 (105)
Q Consensus 33 ~~l~v~nl~~~~~~~~l~~~f~~ 55 (105)
....|+|||+.++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999988887764
No 236
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.56 E-value=32 Score=18.56 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=7.8
Q ss_pred HHHHHHhhcCC
Q 036554 47 ANLTDQFLRFG 57 (105)
Q Consensus 47 ~~l~~~f~~~g 57 (105)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 46788888887
No 237
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=23.40 E-value=61 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=19.1
Q ss_pred CCCCCcCHHHHHHHhhcCCC--eeEEE
Q 036554 39 NLSHNIEEANLTDQFLRFGE--LESVA 63 (105)
Q Consensus 39 nl~~~~~~~~l~~~f~~~g~--i~~~~ 63 (105)
.||...+......++..||. |..+.
T Consensus 195 ~LP~~y~~~~y~~fI~~yGTHyits~~ 221 (367)
T 2rd7_A 195 ELPDQYNYGMYAKFINDYGTHYITSGS 221 (367)
T ss_dssp TSCSSCCHHHHHHHHHHHCSEEEEEEE
T ss_pred hCcccCCHHHHHHHHHHcCcEEEeccc
Confidence 46777788888999999997 44443
No 238
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=22.54 E-value=82 Score=15.55 Aligned_cols=55 Identities=5% Similarity=-0.031 Sum_probs=36.3
Q ss_pred ccEEEEcCCCCCcCHHHHHHHhhcCCCeeEEEEeCCCcEEEEEeC-CHHHHHHHHH
Q 036554 32 SRHLWVGNLSHNIEEANLTDQFLRFGELESVAFQPGRSYAFINFK-IEEDAIASMK 86 (105)
Q Consensus 32 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fv~f~-~~~~a~~a~~ 86 (105)
..++.|.++.-..-...|+..+.....|..+.+....+.+.|.+. +.+....+++
T Consensus 23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~ 78 (85)
T 2k2p_A 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIIT 78 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHH
Confidence 446777777665555678888888777777777665667777765 3344444444
No 239
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.21 E-value=85 Score=16.24 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=22.9
Q ss_pred eeEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcC
Q 036554 59 LESVAFQP-GRSYAFINFKIEEDAIASMKALQG 90 (105)
Q Consensus 59 i~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~ 90 (105)
+..+.+.. -.||.||++...++...+++...+
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 55555543 368999999998887777765554
No 240
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=20.58 E-value=17 Score=17.33 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=10.4
Q ss_pred EcCCCCCcCHHHHHHHhhc
Q 036554 37 VGNLSHNIEEANLTDQFLR 55 (105)
Q Consensus 37 v~nl~~~~~~~~l~~~f~~ 55 (105)
+.|+|..+....|++.+..
T Consensus 43 lenvprgtktahirealrr 61 (70)
T 2q2k_A 43 LENVPRGTKTAHIREALRR 61 (70)
T ss_dssp HTTSCTTCHHHHHHHHHHH
T ss_pred HHcCCCccchHHHHHHHHH
Confidence 4466666655555554443
No 241
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.44 E-value=72 Score=17.21 Aligned_cols=34 Identities=9% Similarity=0.232 Sum_probs=25.6
Q ss_pred eeEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCc
Q 036554 59 LESVAFQP-GRSYAFINFKIEEDAIASMKALQGFP 92 (105)
Q Consensus 59 i~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~ 92 (105)
|..+.... -+||-||+=.+......|++.+.+..
T Consensus 41 I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 55555543 48999999999999999888765543
Done!