BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036555
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 100 VVPKKNAAGTAVKTLMMLIEETDGGDWQMKKD------GDVEGGEVLTLREG-----SDW 148
++ K NAA K + I+ T + + K+ DV G L+L E +
Sbjct: 240 ILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSG---LSLEEQLRRLQEER 296
Query: 149 MCCVCMERNKGAAFIPCGH-TFCRVCSRDLWLNRGTCPICNRSIIE 193
C VCM++ FIPCGH C+ C+ L CPIC R II+
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPIC-RGIIK 337
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPIC 187
C VC++R F+PCGH C C+ L L CPIC
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGLQL----CPIC 49
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 37.0 bits (84), Expect = 0.007, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLW--LNRG-TCPIC 187
C VC+E K I CGH FC+ C W L R CP+C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191
++ C +C E A + C H+FC C + W+ R CPIC + I
Sbjct: 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINE-WMKRKIECPICRKDI 97
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 36.6 bits (83), Expect = 0.009, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193
GS + C +C+ + A PCGH FC+ C + G CP+ N ++E
Sbjct: 4 GSKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 53
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191
++ C +C E A + C H+FC C + W+ R CPIC + I
Sbjct: 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINE-WMKRKIECPICRKDI 97
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 36.2 bits (82), Expect = 0.012, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 165 CGHTFCRVCSRDLWLNRGTCPICNRSI 191
CGH FC C RD N TCP C + I
Sbjct: 28 CGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 143 REGSDWMCCVCMERNKGAAFIPCGHTF-CRVCSRDLWLNRGTCPICNRSIIEILDIF 198
R + +C +CM+RN F+PCGH C+ C+ + CP+C I IF
Sbjct: 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIF 72
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191
++ C +C E A + C H+FC C + W+ R CPIC + I
Sbjct: 63 NELQCIICSEYFIEAVTLNCAHSFCSYCINE-WMKRKIECPICRKDI 108
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 143 REGSDWMCCVCMERNKGAAFIPCGHTF-CRVCSRDLWLNRGTCPICNRSIIEILDIF 198
R + +C +CM+RN F+PCGH C+ C+ + CP+C I IF
Sbjct: 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIF 73
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 143 REGSDWMCCVCMERNKGAAFIPCGHTF-CRVCSRDLWLNRGTCPICNRSI 191
R + +C +CM+RN F+PCGH C+ C+ + CP+C I
Sbjct: 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVI 65
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 142 LREGSDWMCC-VCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILDIF 198
LR+ + M C VC E + F PCGHT VC +CP+C + + ++
Sbjct: 12 LRKLKEAMLCMVCCEEEINSTFCPCGHT---VCCESCAAQLQSCPVCRSRVEHVQHVY 66
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPIC 187
CC+CM+ + +PC H+FC+ C D W +R CPIC
Sbjct: 18 CCICMD-GRADLILPCAHSFCQKCI-DKWSDRHRNCPIC 54
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 143 REGSDWMCCVCMERNKGAAFIPCGH-TFCRVCSRDLWLNRGTCPICNRSI 191
R + C VCM++ FIPCGH C+ C+ L CPIC +I
Sbjct: 20 RLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTI 65
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 165 CGHTFCRVCSRDLWLNRGTCPICNRSI 191
CGH FC C RD N TCP C + I
Sbjct: 35 CGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 165 CGHTFCRVCSRDLWLNRGTCPICNRSI 191
CGH FC C RD N TCP C + I
Sbjct: 40 CGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 165 CGHTFCRVCSRDLWLNRGTCPICNRSI 191
CGH FC C RD N TCP C + I
Sbjct: 32 CGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 165 CGHTFCRVCSRDLWLNRGTCPICNRSI 191
CGH FC C RD N TCP C + I
Sbjct: 97 CGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 150 CCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNRGTCPICNRSIIE 193
C +C E A IP C H +C +C R + CP C ++ E
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193
S + C +C+ + A PCGH FC+ C + G CP+ N ++E
Sbjct: 24 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 72
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 133 DVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191
DVE L S + C +C+ + A PCGH FC+ C + G CP+ N +
Sbjct: 8 DVEFDPPLE----SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63
Query: 192 IE 193
+E
Sbjct: 64 LE 65
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPIC 187
+C +C E +K PCGH C C + G CP C
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPIC 187
+C +C E +K PCGH C C + G CP C
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPIC 187
+C +C E +K PCGH C C + G CP C
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPIC 187
+C +C E +K PCGH C C + G CP C
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 133 DVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191
DVE L S + C +C+ + A PCGH FC+ C + G CP+ N +
Sbjct: 8 DVEFDPPLE----SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63
Query: 192 IE 193
+E
Sbjct: 64 LE 65
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 149 MCC--VCMERNKG--AAFIPCGHTFCRVCSRDLWLNR-GTCPIC 187
MCC C E KG A +PC H F + C +WL + GTCP+C
Sbjct: 41 MCCPICCSEYVKGDVATELPCHHYFHKPC-VSIWLQKSGTCPVC 83
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 149 MCCVCMERNKG---AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILDI 197
+C VC+E K PC H F R C R CP+CN ++++ +
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPIC 187
+C +C E +K PCGH C C + G CP C
Sbjct: 340 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR---GTCPICNRSI 191
C +C+E K C H FC+ C L + CP+C I
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 150 CCVCMERNKGAAF-IPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195
C +C+E + +PC H FC VC TCP+C + ++
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT--CPICNRSI 191
S+ C +CME +PC HT C+ C + + + + CP C R +
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQST-VEKASLCCPFCRRRV 60
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 147 DWMCCVCMERNKGAAFIPCGHTFCRVC-SRDLWLNR-----GTCPIC 187
+ C +C+E K C H+FCR C + + NR G CP+C
Sbjct: 19 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 147 DWMCCVCMERNKGAAFIPCGHTFCRVC----SRDLWLNRG--TCPIC 187
+ C +C+E + CGH+FC+ C + L++G +CP+C
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVC 65
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 150 CCVCMERNKGAAFIP----CGHTFCRVCSRDLW---LNRGTCPICNR 189
C +CME P CGHT CR C L +N CP C++
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPICNRSI 191
+C +C E +K PCGH C C + G CP C I
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPICNRSI 191
+C +C E +K PCGH C C + G CP C I
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 150 CCVCME----RNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRS 190
C +C+E A +PCGH R C ++ CP+C S
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 150 CCVCME----RNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICN 188
C +C+E A +PCGH R C ++ CP+C+
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDL-WLNRGTCPICNRSIIE 193
C +C++ +PC H FC +C + WL + C +C + I E
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPE 61
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT-CPICNRSI 191
+C +C E +K PCGH C C + G CP C I
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 134 VEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVC-SRDLWLNRGTCPICNRSI 191
VEG L E S +MC C E C H C+ C R +CP C +
Sbjct: 66 VEGPNFLKKLEQS-FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 154 MERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSI 191
+E + +PC H F +VC + CPIC I
Sbjct: 24 LEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPIC 187
C C K +PC HT C C L + CPIC
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGC---LEASGMQCPIC 43
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 26.9 bits (58), Expect = 8.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 150 CCVCMERNKGAAFI--PCGHTF-CRVCSRDLWLNRGTCPICNRSIIEILDIF 198
C +C +R + I GH C C+R L +CPIC + I ++ +F
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 147 DWMCCVCMERNKGAAFIPCGHTFCRVC----SRDLWLNRG---TCPICNRS 190
+ C +C+E + CGH+ CR C +++ + G +CP+C S
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,058,064
Number of Sequences: 62578
Number of extensions: 176250
Number of successful extensions: 537
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 59
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)