BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036555
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 132 GDVEGGEVLTLREGSDWM-CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPIC 187
D + +V L+E D + C +C + K PCGHTFC +C R N CP+C
Sbjct: 8 ADFKKSKVPQLQELDDLLRCHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLC 64
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 29/177 (16%)
Query: 50 PEEQERGTHVRMHMRNAAASVTAAGAGTTINMNLAMALAAERNLR--------SGDGLVV 101
P+ E + R H + +GT +++ + + L S + ++
Sbjct: 174 PQFPEVYSPTRFHFQKGPGQKFLQPSGTGTDLSFFVLDDLSKPLEEDVYPLVISAETIIS 233
Query: 102 PKKNAAGTAV--KTLMMLIEETDGGDWQMKK-----------------DGDVEGGEVLTL 142
P + ++V + ++E+ + G +++K G G L
Sbjct: 234 PNSISEQSSVHKQVTQAVLEKDNDGSFKVKVVKQILWIEGVRYELRELYGSTTQGAASGL 293
Query: 143 RE-GSDWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDI 197
E GS C +CM K A +PC H C C+++L L CPIC + I E+L+I
Sbjct: 294 DESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEI 350
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 122 DGGDWQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR 181
+G + DG G E+ D +C +CM+ K A CGH+FC +C N+
Sbjct: 24 EGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNK 83
Query: 182 GTCPICNRSI 191
CP C++ +
Sbjct: 84 SDCPCCSQHL 93
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 139 VLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN--RGTCPICNRSI 191
V LR+G C +C+E + A PC H CR C W N G CP+C ++
Sbjct: 783 VEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTV 837
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 118 IEETDGGDWQMKKDGDVEG--GEVLTLREGSDWMCCVCMER---NKGAAFIPCGHTFCRV 172
+E+ + + K G EG G + TL GS C +C+E+ + IPC H F R
Sbjct: 256 LEKMETRKFNSKSKGRREGSCGALDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRK 315
Query: 173 CSRDLWLNRGTCPICNRSIIE 193
C L TCP C +IIE
Sbjct: 316 CVDPWLLQHHTCPHCRHNIIE 336
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 115 MMLIEETDGGDWQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCS 174
M ++ TD DW K ++G + S C +C E + C HTFC C
Sbjct: 1 MNELDATDPSDWNQTKIPSLKGLD-------SSLRCLICHEYFRAPLITSCSHTFCSFCI 53
Query: 175 RDLWLNRGTCPIC 187
RD CP C
Sbjct: 54 RDYLREHPMCPAC 66
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193
C +C + K + PCGH+FC +C R CP+C + E
Sbjct: 32 CHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTE 75
>sp|P10862|RAD18_YEAST Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RAD18 PE=1 SV=1
Length = 487
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 125 DWQMKKDGDVEGGEVLTLREGSDWM-CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT 183
D Q+ D + +L + + C +C + K PCGHTFC +C R N+
Sbjct: 2 DHQITTASDFTTTSIPSLYQLDTLLRCHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPN 61
Query: 184 CPIC 187
CP+C
Sbjct: 62 CPLC 65
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 150 CCVCMERNKGAA-FIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195
CC+C++ GAA +PC H FC C R R TCP+C + ++
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQSLI 59
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 150 CCVCMERNKGAA-FIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195
CC+C++ GAA +PC H FC C R R TCP+C + ++
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQSLI 59
>sp|Q557E7|CBLA_DICDI E3 ubiquitin-protein ligase cblA OS=Dictyostelium discoideum
GN=cblA-1 PE=1 SV=1
Length = 665
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 149 MCCVCMERNKGAAFIPCGH-TFCRVCSRDLWLNRGTCPICNRSIIEILDIF 198
+C VCM+ F+ CGH + C +CS L CPIC I +++IF
Sbjct: 617 LCTVCMDNEINTVFLECGHLSCCSLCSVKL----KKCPICRSRITRVINIF 663
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 121 TDGGDWQMKKDGDVEGGEVLTLRE-GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWL 179
TD DW E ++ L+E S C +C E K C HTFC C R+ +
Sbjct: 14 TDPSDW--------EPTKLPNLKELDSLQRCYICKEFLKAPVITSCNHTFCSHCIREYLI 65
Query: 180 NRGTCPIC 187
CP+C
Sbjct: 66 VNSHCPLC 73
>sp|Q6R7C4|IAP4_OSHVF Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF106 PE=4 SV=1
Length = 465
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 138 EVLTLREGSDWMCCVCMERNKGAAFIPCGHTF-CRVCSRDLWLN---RGTCPICNRSIIE 193
EV + GS C C ER AFIPCGH F C +C+ +++ + + CP+C + +
Sbjct: 396 EVENPKRGS---CKACYERKADIAFIPCGHVFSCNICTMEMFASYKKKKRCPMCRVHVEK 452
Query: 194 ILDIF 198
+ IF
Sbjct: 453 VQKIF 457
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPIC 187
D++C +CM+ K A CGH+FC +C N+ CP C
Sbjct: 44 DFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCC 84
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 142 LREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR--GTCPICNRSIIE 193
LR+G+ C +C+E PC H CR C W + G CPIC R+I++
Sbjct: 1032 LRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPIC-RTILK 1084
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWL---NRGTCPICNRSI 191
C +C++ + I CGH FCR C+ D+ NR CP+C +
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPF 60
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWL---NRGTCPICNRSI 191
C +C++ + I CGH FCR C+ D+ NR CP+C +
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPF 60
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 101 VPKKNAAGTAVKTLMMLIEETDGGDWQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGA 160
P NA G K + L Q + + E + L+L + +D+ C +CM
Sbjct: 410 APDLNAPGKIPKKDLSL---------QRSPNSETEESQGLSL-DVTDFECALCMRLLFEP 459
Query: 161 AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195
PCGHTFC C + CP+C + E+L
Sbjct: 460 VTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSELL 494
>sp|Q4WDD7|BRE1_ASPFU E3 ubiquitin-protein ligase bre1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bre1
PE=3 SV=2
Length = 725
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 107 AGTAVKTLMMLIEETDGG--DWQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIP 164
A T +++L + + +T +W+ K G+ E LR S +C VC K A
Sbjct: 631 AETEIESLKVTLADTKKSLENWKNKSLGN-SSSEYEMLR--SLALCTVCRRNFKNTAIKT 687
Query: 165 CGHTFCRVCSRDLWLNRG-TCPICNRS 190
CGH FC+ C + +R CP CNRS
Sbjct: 688 CGHVFCKECVEERLTSRSRKCPNCNRS 714
>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus
GN=Birc3 PE=1 SV=2
Length = 600
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 149 MCCVCMERNKGAAFIPCGH-TFCRVCSRDLWLNRGTCPICNRSI 191
MC VCM+R FIPCGH C+ C+ L CPIC +I
Sbjct: 552 MCKVCMDREVSIVFIPCGHLVVCKDCAPSL----RKCPICRGTI 591
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT--CPICNRSIIE 193
C +C+E K + CGH FCR C +W + + CP C SI +
Sbjct: 146 CPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESITD 191
>sp|Q9UPQ4|TRI35_HUMAN Tripartite motif-containing protein 35 OS=Homo sapiens GN=TRIM35
PE=1 SV=2
Length = 493
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 128 MKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR--GTCP 185
M++ DV G + +E + +C VC + + A + CGH FCR C W + TCP
Sbjct: 1 MERSPDVSPGPSRSFKE--ELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCP 58
Query: 186 ICN 188
+C
Sbjct: 59 VCK 61
>sp|Q5RBG2|TRI35_PONAB Tripartite motif-containing protein 35 OS=Pongo abelii GN=TRIM35
PE=2 SV=1
Length = 492
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 128 MKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR--GTCP 185
M++ DV G + +E + +C VC + + A + CGH FCR C W + TCP
Sbjct: 1 MERSPDVSPGPSRSFKE--ELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCP 58
Query: 186 ICN 188
+C
Sbjct: 59 VCK 61
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSII 192
+C +C+ER K +PC HTFC C ++ +CP+C ++ I
Sbjct: 22 ICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSI 68
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSII 192
+C +C+ER K +PC HTFC C ++ +CP+C ++ I
Sbjct: 22 ICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSI 68
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSII 192
+C +C+ER K +PC HTFC C ++ +CP+C ++ I
Sbjct: 22 ICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSI 68
>sp|Q6R797|Y118_OSHVF Putative RING finger protein ORF118 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF118 PE=4 SV=1
Length = 222
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 33/99 (33%)
Query: 90 ERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGDWQMKKDGDVEGGEVLTLREGSDWM 149
ER ++S GLV TL M+I+ TD ++T D
Sbjct: 49 EREVKSLRGLVC-----------TLKMMIKNTD----------------IITY----DEE 77
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICN 188
CC+CM +N +PC H CR C R CP+CN
Sbjct: 78 CCICMAKNNRKEALPCQHNVCRDCYYKPM--RNNCPVCN 114
>sp|Q5ACW2|CWC24_CANAL Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC24 PE=3 SV=1
Length = 216
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 128 MKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLW--LNRGTCP 185
+KKD ++ G + + +E + C +C K CGH FC+ C D + +GTC
Sbjct: 134 IKKDWEIGGQKEVKEKEDIPFKCVLCKSDYKSPIKTECGHIFCKACFLDRYKAKKKGTCF 193
Query: 186 ICNR 189
IC++
Sbjct: 194 ICHK 197
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSII 192
+C +C+ER K +PC HTFC C ++ +CP+C ++ I
Sbjct: 22 ICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSI 68
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT---CPICNR 189
C VC+E K PCGH FC C + W+ +G CP C +
Sbjct: 13 CSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQCRK 55
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSII 192
+C +C+ER K +PC HTFC C ++ +CP+C ++ I
Sbjct: 22 ICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSI 68
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSII 192
+C +C+ER K +PC HTFC C ++ +CP+C ++ I
Sbjct: 22 ICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQTSI 68
>sp|Q5U5Q3|MEX3C_HUMAN RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens
GN=MEX3C PE=1 SV=3
Length = 659
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 150 CCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRG-TCPICNRSIIEILDI 197
C +C E AA +PCGH FC C+ + R +CP+C ++ + + I
Sbjct: 608 CVICFENEVIAALVPCGHNLFCMECANKICEKRTPSCPVCQTAVTQAIQI 657
>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus GN=Mex3b PE=2 SV=2
Length = 601
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 142 LREGSDWMCCVCMERNKGAAFIPCGHT-FCRVCS-RDLWLNRGTCPICNRSIIEILDIF 198
LR C VC E AA +PCGH FC C+ R + CP+C+ ++ + + IF
Sbjct: 542 LRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIF 600
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191
CC+CM+ + +PC H+FC+ C D W +R +CP+C R +
Sbjct: 155 CCICMD-GRVDLILPCAHSFCQKC-IDKWSDRHRSCPVCRRQV 195
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 127 QMKKDGDVEGGEVLTLREGSDWMCCVCMER-NKGAAFIPCGHTFCRVCSRDLWLNRGT-- 183
Q + + D++ +L L E C VC+ER + A +PC HTFCR C + +R
Sbjct: 34 QARTEEDMDESSLLDLLE-----CSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELR 88
Query: 184 CPIC 187
CP C
Sbjct: 89 CPEC 92
>sp|Q05A36|MEX3C_MOUSE RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Mus musculus
GN=Mex3c PE=2 SV=2
Length = 652
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 150 CCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRG-TCPICNRSIIEILDI 197
C +C E AA +PCGH FC C+ + R +CP+C ++ + + I
Sbjct: 601 CVICFENEVIAALVPCGHNLFCMECANKICEKRTPSCPVCQTAVTQAIQI 650
>sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis GN=mex3b PE=2 SV=1
Length = 507
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 150 CCVCMERNKGAAFIPCGHT-FCRVCS-RDLWLNRGTCPICNRSIIEILDIF 198
C +C E AA +PCGH FC C+ R N+ CP+C+ + + + IF
Sbjct: 456 CSICFESEVIAALVPCGHNLFCMECANRICEKNQPQCPVCHAGVTQAIRIF 506
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 150 CCVCMER-NKGAAFIPCGHTFCRVCSRDLWLNRGT--CPICNRSIIE 193
C VC+ER + A +PC HTFCR C + +RG CP C R+++E
Sbjct: 12 CPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPEC-RTLVE 57
>sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bre1 PE=3 SV=1
Length = 760
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 10/157 (6%)
Query: 37 LTIMPRQEEEEEEPEEQERGTHVRMHMRNAAASVTAAGAGTTINMNLAMALAAERNLRSG 96
L M +Q E +E H + A + G IN ++ + + L S
Sbjct: 600 LANMEKQVSETKEALNSMMNKHHATQQQLAENGIVIEGLKGQINELKTLSTSKDATLAST 659
Query: 97 DGLVVPKKNAAGTAVKTLMMLIEETDGG--DWQMKKDGDVEGGEVLTLREGSDWMCCVCM 154
A T ++ L + +T +W+ K G+ E LR + +C VC
Sbjct: 660 SSAC----RQAETEIEGLKATLADTKKSLDNWKNKSLGN-SSSEYEMLRTLA--LCTVCR 712
Query: 155 ERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRS 190
K A CGH FC+ C + +R CP CNRS
Sbjct: 713 RNFKNTAIKTCGHVFCKDCVEERLTSRSRKCPNCNRS 749
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLN-RGTCPICNRSIIE 193
C +C+ R + +PCGH+FC C +D W + +CP C + E
Sbjct: 13 CSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPFPE 57
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195
SD+ C +CM PCGH+FC+ C + CP+C S+ E L
Sbjct: 475 SDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYL 524
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT--CPICNRSIIE 193
C +C+E K + CGH FCR C W + + CP C SI +
Sbjct: 145 CPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESITD 190
>sp|Q6ZN04|MEX3B_HUMAN RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1
Length = 569
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 142 LREGSDWMCCVCMERNKGAAFIPCGHT-FCRVCS-RDLWLNRGTCPICNRSIIEILDIF 198
LR C VC E AA +PCGH FC C+ R + CP+C+ ++ + + IF
Sbjct: 510 LRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIF 568
>sp|Q5M929|RN135_RAT E3 ubiquitin-protein ligase RNF135 OS=Rattus norvegicus GN=Rnf135
PE=2 SV=1
Length = 415
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR--------GTCPICNR 189
D C +C +PCGH+FC C +DLW+++ CPIC +
Sbjct: 18 DLSCIICQGLLDWPTTLPCGHSFCLQCLKDLWVSKRAGVDSCPWACPICRK 68
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGT---CPIC 187
C +C+E K PCGH FC C + W +G+ CP C
Sbjct: 13 CSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQC 53
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 119 EETDGGDWQMKKDGDVEGGEVLTLR------EGSDWMCCVCMERNKGAAFIPCGHTFCRV 172
E+T + K+D + G+ L + SD C +CM PCGHTFC
Sbjct: 389 EDTGMPNKASKQDPPTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLK 448
Query: 173 CSRDLWLNRGTCPICNRSIIEIL 195
C + CP+C + + L
Sbjct: 449 CLERCLDHNAKCPLCKDGLSQCL 471
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 150 CCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDI 197
C +C+ K A +PC H C C+ +L CPIC + I E++ I
Sbjct: 321 CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKI 369
>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1
SV=1
Length = 1314
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILD 196
+C +C A F PCGH C+ C +N C C +I+ + D
Sbjct: 1253 LCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVSVED 1300
>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123
PE=1 SV=1
Length = 1318
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 149 MCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILD 196
+C +C A F PCGH C+ C +N C C +I+ + D
Sbjct: 1257 LCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVED 1304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,464,493
Number of Sequences: 539616
Number of extensions: 3101402
Number of successful extensions: 18394
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 401
Number of HSP's that attempted gapping in prelim test: 17796
Number of HSP's gapped (non-prelim): 904
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)