Query 036555
Match_columns 198
No_of_seqs 197 out of 1555
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13920 zf-C3HC4_3: Zinc fing 99.3 2.1E-12 4.6E-17 82.3 3.0 48 147-194 2-50 (50)
2 PLN03208 E3 ubiquitin-protein 99.3 5.3E-12 1.2E-16 101.3 4.7 55 144-198 15-87 (193)
3 KOG0320 Predicted E3 ubiquitin 99.2 5.1E-12 1.1E-16 99.4 2.9 54 145-198 129-186 (187)
4 PF15227 zf-C3HC4_4: zinc fing 99.2 8.6E-12 1.9E-16 76.8 3.2 38 150-187 1-42 (42)
5 KOG0823 Predicted E3 ubiquitin 99.2 9.6E-12 2.1E-16 101.6 3.0 55 144-198 44-103 (230)
6 KOG0317 Predicted E3 ubiquitin 99.1 3.4E-11 7.3E-16 101.2 3.9 54 140-193 232-285 (293)
7 PF13639 zf-RING_2: Ring finge 99.1 3.2E-11 7E-16 74.8 2.4 40 149-188 2-44 (44)
8 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.8E-11 1E-15 72.2 2.9 38 150-187 1-39 (39)
9 PHA02929 N1R/p28-like protein; 99.1 1.3E-10 2.8E-15 96.6 4.2 51 146-196 173-231 (238)
10 smart00504 Ubox Modified RING 99.0 3.2E-10 7E-15 75.1 4.1 46 147-192 1-46 (63)
11 KOG4172 Predicted E3 ubiquitin 98.9 1.6E-10 3.4E-15 73.9 0.4 51 148-198 8-60 (62)
12 PF00097 zf-C3HC4: Zinc finger 98.9 9.1E-10 2E-14 67.0 3.1 38 150-187 1-41 (41)
13 TIGR00599 rad18 DNA repair pro 98.9 1.1E-09 2.3E-14 97.3 3.2 50 144-193 23-72 (397)
14 cd00162 RING RING-finger (Real 98.8 2.6E-09 5.5E-14 65.1 3.3 43 149-191 1-45 (45)
15 KOG0978 E3 ubiquitin ligase in 98.8 7.4E-10 1.6E-14 103.4 0.4 56 143-198 639-697 (698)
16 KOG0287 Postreplication repair 98.8 1.4E-09 3.1E-14 93.3 1.6 49 145-193 21-69 (442)
17 PHA02926 zinc finger-like prot 98.8 3.5E-09 7.6E-14 86.4 3.3 52 144-195 167-233 (242)
18 PF14634 zf-RING_5: zinc-RING 98.8 6E-09 1.3E-13 64.6 3.0 41 149-189 1-44 (44)
19 smart00184 RING Ring finger. E 98.7 1E-08 2.2E-13 60.2 3.6 38 150-187 1-39 (39)
20 PF13445 zf-RING_UBOX: RING-ty 98.7 5.8E-09 1.3E-13 64.4 2.5 35 150-185 1-43 (43)
21 COG5432 RAD18 RING-finger-cont 98.7 4.6E-09 1E-13 88.6 1.8 50 144-193 22-71 (391)
22 PF12678 zf-rbx1: RING-H2 zinc 98.7 1.3E-08 2.7E-13 70.1 3.4 40 149-188 21-73 (73)
23 KOG4265 Predicted E3 ubiquitin 98.6 1.6E-08 3.5E-13 87.5 3.2 53 146-198 289-342 (349)
24 KOG4628 Predicted E3 ubiquitin 98.6 2.2E-08 4.7E-13 87.2 3.7 46 148-193 230-279 (348)
25 KOG2164 Predicted E3 ubiquitin 98.6 1.5E-08 3.2E-13 91.2 2.6 52 147-198 186-244 (513)
26 PF04564 U-box: U-box domain; 98.6 2.4E-08 5.1E-13 68.6 2.8 48 146-193 3-51 (73)
27 COG5243 HRD1 HRD ubiquitin lig 98.5 4E-08 8.8E-13 85.4 3.0 48 144-191 284-344 (491)
28 COG5574 PEX10 RING-finger-cont 98.5 5.7E-08 1.2E-12 81.0 3.5 50 143-192 211-262 (271)
29 COG5540 RING-finger-containing 98.5 7.3E-08 1.6E-12 81.8 2.8 47 146-192 322-372 (374)
30 KOG2177 Predicted E3 ubiquitin 98.4 7.8E-08 1.7E-12 79.9 1.5 45 144-188 10-54 (386)
31 KOG4275 Predicted E3 ubiquitin 98.3 1.2E-07 2.6E-12 80.1 0.7 48 147-198 300-348 (350)
32 KOG0802 E3 ubiquitin ligase [P 98.3 3.5E-07 7.6E-12 84.8 2.3 47 145-191 289-340 (543)
33 PF12861 zf-Apc11: Anaphase-pr 98.3 8.9E-07 1.9E-11 62.2 3.4 46 147-192 21-82 (85)
34 PF14835 zf-RING_6: zf-RING of 98.1 6.6E-07 1.4E-11 59.5 -0.2 44 146-191 6-50 (65)
35 KOG0311 Predicted E3 ubiquitin 98.0 5.2E-07 1.1E-11 78.1 -1.4 49 145-193 41-91 (381)
36 KOG4159 Predicted E3 ubiquitin 98.0 2.3E-06 5E-11 76.2 2.1 49 145-193 82-130 (398)
37 COG5152 Uncharacterized conser 97.9 3.6E-06 7.7E-11 67.8 1.0 48 146-193 195-242 (259)
38 KOG4692 Predicted E3 ubiquitin 97.8 1E-05 2.3E-10 70.2 2.3 50 145-194 420-469 (489)
39 KOG2660 Locus-specific chromos 97.8 6.6E-06 1.4E-10 70.8 0.7 50 146-195 14-64 (331)
40 KOG1571 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 69.9 1.9 50 146-198 304-353 (355)
41 KOG1785 Tyrosine kinase negati 97.6 2.1E-05 4.5E-10 69.4 1.7 47 148-194 370-418 (563)
42 KOG1039 Predicted E3 ubiquitin 97.6 2.8E-05 6E-10 68.1 2.1 51 144-194 158-223 (344)
43 KOG1813 Predicted E3 ubiquitin 97.6 1.7E-05 3.6E-10 67.4 0.6 49 147-195 241-289 (313)
44 KOG2879 Predicted E3 ubiquitin 97.6 5.2E-05 1.1E-09 63.8 3.1 49 144-192 236-287 (298)
45 KOG0804 Cytoplasmic Zn-finger 97.5 3.3E-05 7.2E-10 68.9 1.5 48 143-192 171-222 (493)
46 KOG0297 TNF receptor-associate 97.5 3.7E-05 8E-10 68.7 1.8 51 144-194 18-69 (391)
47 KOG0828 Predicted E3 ubiquitin 97.5 5.6E-05 1.2E-09 68.2 1.9 49 145-193 569-635 (636)
48 PF11789 zf-Nse: Zinc-finger o 97.4 0.00012 2.7E-09 47.8 2.5 41 146-186 10-53 (57)
49 PF11793 FANCL_C: FANCL C-term 97.4 3.4E-05 7.3E-10 52.6 -0.4 46 147-192 2-66 (70)
50 smart00744 RINGv The RING-vari 97.3 0.00026 5.7E-09 44.8 3.2 40 149-188 1-49 (49)
51 COG5194 APC11 Component of SCF 97.3 0.00018 3.9E-09 49.8 2.6 29 164-192 53-81 (88)
52 KOG0825 PHD Zn-finger protein 97.2 7.2E-05 1.6E-09 70.7 -0.0 50 146-195 122-174 (1134)
53 KOG1734 Predicted RING-contain 97.0 0.00028 6E-09 59.5 1.0 47 146-192 223-281 (328)
54 PF14570 zf-RING_4: RING/Ubox 96.9 0.00049 1.1E-08 43.3 1.7 42 150-191 1-47 (48)
55 KOG1002 Nucleotide excision re 96.9 0.00035 7.5E-09 63.8 1.1 47 145-191 534-585 (791)
56 KOG3039 Uncharacterized conser 96.8 0.00081 1.7E-08 56.0 2.7 49 145-193 219-271 (303)
57 KOG2930 SCF ubiquitin ligase, 96.8 0.00079 1.7E-08 48.8 2.0 27 164-190 80-106 (114)
58 COG5219 Uncharacterized conser 96.8 0.00045 9.7E-09 66.8 0.9 48 145-192 1467-1523(1525)
59 PF14447 Prok-RING_4: Prokaryo 96.7 0.00069 1.5E-08 43.7 1.1 44 147-192 7-50 (55)
60 COG5222 Uncharacterized conser 96.6 0.00096 2.1E-08 57.1 1.9 42 148-189 275-318 (427)
61 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0018 4E-08 54.8 3.5 49 144-193 110-162 (260)
62 KOG1493 Anaphase-promoting com 96.5 0.00048 1E-08 47.3 -0.4 44 149-192 22-81 (84)
63 KOG1814 Predicted E3 ubiquitin 96.4 0.0019 4.2E-08 57.3 2.1 36 144-179 181-219 (445)
64 KOG0826 Predicted E3 ubiquitin 96.3 0.0021 4.5E-08 55.6 1.8 53 146-198 299-354 (357)
65 COG5236 Uncharacterized conser 96.3 0.0037 8E-08 54.6 3.3 48 147-194 61-110 (493)
66 KOG1100 Predicted E3 ubiquitin 96.2 0.0017 3.7E-08 53.3 0.9 46 149-198 160-206 (207)
67 PF05290 Baculo_IE-1: Baculovi 95.9 0.0057 1.2E-07 46.4 2.4 47 147-193 80-133 (140)
68 KOG1001 Helicase-like transcri 95.8 0.0039 8.5E-08 59.4 1.5 45 148-193 455-501 (674)
69 KOG1941 Acetylcholine receptor 95.7 0.0041 8.9E-08 55.0 0.9 47 146-192 364-416 (518)
70 KOG3002 Zn finger protein [Gen 95.5 0.0086 1.9E-07 51.7 2.4 45 146-194 47-93 (299)
71 PF03854 zf-P11: P-11 zinc fin 95.1 0.0066 1.4E-07 37.9 0.2 45 149-195 4-49 (50)
72 KOG3970 Predicted E3 ubiquitin 95.1 0.033 7.3E-07 46.0 4.3 45 148-192 51-105 (299)
73 KOG3579 Predicted E3 ubiquitin 95.0 0.012 2.6E-07 50.2 1.5 48 144-191 265-327 (352)
74 KOG2932 E3 ubiquitin ligase in 94.9 0.012 2.5E-07 50.8 1.1 45 148-194 91-136 (389)
75 COG5220 TFB3 Cdk activating ki 94.8 0.011 2.3E-07 49.4 0.7 47 147-193 10-65 (314)
76 COG5175 MOT2 Transcriptional r 94.7 0.019 4.2E-07 50.0 2.2 47 147-193 14-65 (480)
77 PF10367 Vps39_2: Vacuolar sor 94.5 0.014 3.1E-07 42.0 0.7 32 144-175 75-108 (109)
78 KOG1428 Inhibitor of type V ad 94.3 0.032 7E-07 56.7 2.8 49 145-193 3484-3545(3738)
79 KOG1952 Transcription factor N 94.2 0.056 1.2E-06 52.2 4.2 47 146-192 190-247 (950)
80 PHA03096 p28-like protein; Pro 94.1 0.027 5.8E-07 48.4 1.8 41 148-188 179-230 (284)
81 KOG4445 Uncharacterized conser 94.1 0.016 3.5E-07 49.7 0.3 46 147-192 115-186 (368)
82 KOG2114 Vacuolar assembly/sort 93.9 0.023 5.1E-07 54.7 1.0 46 147-195 840-886 (933)
83 KOG2817 Predicted E3 ubiquitin 93.1 0.22 4.8E-06 44.3 5.7 53 146-198 333-393 (394)
84 PF02891 zf-MIZ: MIZ/SP-RING z 92.8 0.15 3.2E-06 32.2 3.2 43 148-190 3-50 (50)
85 PHA02862 5L protein; Provision 92.7 0.12 2.6E-06 39.9 3.1 43 149-192 4-53 (156)
86 KOG4362 Transcriptional regula 92.5 0.028 6E-07 53.3 -0.7 47 146-192 20-69 (684)
87 PF10272 Tmpp129: Putative tra 92.0 0.13 2.8E-06 45.5 2.9 28 165-192 311-351 (358)
88 KOG1940 Zn-finger protein [Gen 91.9 0.061 1.3E-06 45.9 0.7 43 147-189 158-204 (276)
89 PHA02825 LAP/PHD finger-like p 91.6 0.23 5E-06 38.9 3.6 46 146-192 7-59 (162)
90 KOG4185 Predicted E3 ubiquitin 91.6 0.099 2.1E-06 44.7 1.7 34 158-191 20-54 (296)
91 PF08746 zf-RING-like: RING-li 90.5 0.28 6.1E-06 30.0 2.5 38 150-187 1-43 (43)
92 KOG3161 Predicted E3 ubiquitin 90.1 0.13 2.8E-06 48.5 1.0 38 146-185 10-51 (861)
93 PF05883 Baculo_RING: Baculovi 89.6 0.3 6.4E-06 37.3 2.5 39 147-185 26-73 (134)
94 PF12906 RINGv: RING-variant d 89.1 0.18 4E-06 31.4 0.9 38 150-187 1-47 (47)
95 KOG2113 Predicted RNA binding 89.0 0.33 7.2E-06 42.1 2.7 54 142-197 338-392 (394)
96 KOG3268 Predicted E3 ubiquitin 88.8 0.29 6.4E-06 39.2 2.1 46 147-192 165-228 (234)
97 KOG3039 Uncharacterized conser 86.3 0.5 1.1E-05 39.7 2.1 35 146-180 42-76 (303)
98 KOG1645 RING-finger-containing 86.2 0.48 1E-05 42.5 2.1 32 161-192 23-56 (463)
99 KOG0298 DEAD box-containing he 85.6 0.26 5.6E-06 49.8 0.1 49 144-192 1150-1199(1394)
100 KOG3899 Uncharacterized conser 82.7 0.77 1.7E-05 39.6 1.7 28 165-192 325-365 (381)
101 KOG1815 Predicted E3 ubiquitin 82.6 0.88 1.9E-05 41.4 2.2 35 146-180 69-104 (444)
102 KOG2034 Vacuolar sorting prote 81.5 0.9 1.9E-05 44.4 1.9 36 144-179 814-851 (911)
103 KOG3113 Uncharacterized conser 81.0 2.1 4.5E-05 36.2 3.6 48 144-193 108-159 (293)
104 KOG1812 Predicted E3 ubiquitin 79.8 0.93 2E-05 40.6 1.4 33 147-179 146-182 (384)
105 KOG3053 Uncharacterized conser 79.1 1.3 2.9E-05 37.4 2.0 50 146-195 19-85 (293)
106 PF04216 FdhE: Protein involve 77.5 0.45 9.8E-06 40.8 -1.3 50 146-195 171-225 (290)
107 COG5183 SSM4 Protein involved 75.5 2.5 5.4E-05 41.3 2.9 45 147-191 12-65 (1175)
108 KOG4451 Uncharacterized conser 73.0 8 0.00017 32.3 4.9 25 167-191 249-273 (286)
109 KOG3842 Adaptor protein Pellin 71.6 3 6.4E-05 36.5 2.2 45 147-192 341-414 (429)
110 KOG2068 MOT2 transcription fac 70.2 2.8 6.2E-05 36.6 1.8 45 148-192 250-298 (327)
111 COG5109 Uncharacterized conser 70.2 3.3 7.2E-05 36.1 2.2 54 145-198 334-395 (396)
112 KOG0309 Conserved WD40 repeat- 68.7 3.1 6.7E-05 40.4 1.8 25 162-186 1045-1069(1081)
113 PRK03564 formate dehydrogenase 67.0 2.2 4.7E-05 37.2 0.5 45 146-190 186-235 (309)
114 COG3813 Uncharacterized protei 65.8 4.4 9.5E-05 27.7 1.7 25 166-192 28-52 (84)
115 TIGR01562 FdhE formate dehydro 62.2 2.1 4.5E-05 37.3 -0.6 45 146-190 183-233 (305)
116 KOG0825 PHD Zn-finger protein 60.4 6.3 0.00014 38.5 2.2 46 148-193 97-155 (1134)
117 PF11494 Ta0938: Ta0938; Inte 58.3 3.9 8.5E-05 29.5 0.4 14 18-31 10-25 (105)
118 PF06844 DUF1244: Protein of u 57.6 6.6 0.00014 26.3 1.4 13 168-180 11-23 (68)
119 PF06906 DUF1272: Protein of u 57.4 8.5 0.00018 24.9 1.8 43 149-193 7-53 (57)
120 PF10235 Cript: Microtubule-as 57.0 4.2 9.1E-05 29.0 0.4 38 148-194 45-82 (90)
121 PF07191 zinc-ribbons_6: zinc- 57.0 0.84 1.8E-05 31.0 -3.0 41 148-193 2-42 (70)
122 KOG1812 Predicted E3 ubiquitin 56.9 5.9 0.00013 35.5 1.4 42 145-186 304-350 (384)
123 KOG2807 RNA polymerase II tran 56.5 9 0.0002 33.6 2.4 43 147-189 330-375 (378)
124 PF07975 C1_4: TFIIH C1-like d 55.2 6.8 0.00015 24.9 1.1 25 164-188 26-50 (51)
125 PF05605 zf-Di19: Drought indu 54.5 4.7 0.0001 25.5 0.3 39 147-192 2-42 (54)
126 PF14569 zf-UDP: Zinc-binding 53.8 16 0.00035 25.3 2.8 47 147-193 9-63 (80)
127 KOG0824 Predicted E3 ubiquitin 53.8 3.9 8.4E-05 35.4 -0.3 48 146-193 104-152 (324)
128 PF13240 zinc_ribbon_2: zinc-r 53.2 1.6 3.4E-05 23.0 -1.7 9 182-190 14-22 (23)
129 KOG0269 WD40 repeat-containing 52.4 15 0.00032 35.7 3.3 39 148-186 780-820 (839)
130 KOG2113 Predicted RNA binding 51.8 5.5 0.00012 34.8 0.3 54 143-196 132-187 (394)
131 PF04710 Pellino: Pellino; In 51.7 4.9 0.00011 36.1 0.0 29 161-192 305-339 (416)
132 PF04423 Rad50_zn_hook: Rad50 51.0 5.6 0.00012 25.1 0.2 11 183-193 22-32 (54)
133 PF04710 Pellino: Pellino; In 51.0 5.1 0.00011 36.0 0.0 47 147-193 328-402 (416)
134 KOG0827 Predicted E3 ubiquitin 50.8 1.7 3.8E-05 38.8 -2.9 45 149-193 198-246 (465)
135 TIGR01911 HesB_rel_seleno HesB 47.1 6.7 0.00014 27.8 0.1 18 17-34 29-46 (92)
136 PF10146 zf-C4H2: Zinc finger- 47.0 13 0.00028 31.0 1.8 24 168-191 195-218 (230)
137 TIGR00622 ssl1 transcription f 46.1 18 0.00039 26.8 2.3 40 149-188 57-110 (112)
138 PF14353 CpXC: CpXC protein 46.0 19 0.0004 26.8 2.4 45 148-192 2-49 (128)
139 PF10571 UPF0547: Uncharacteri 44.1 4.8 0.0001 21.8 -0.8 11 180-190 13-23 (26)
140 PF14446 Prok-RING_1: Prokaryo 43.9 20 0.00043 23.1 1.9 39 148-190 6-50 (54)
141 KOG4185 Predicted E3 ubiquitin 43.7 4.4 9.5E-05 34.5 -1.5 43 148-190 208-265 (296)
142 PF15147 DUF4578: Domain of un 41.9 11 0.00024 27.9 0.6 11 25-35 6-16 (127)
143 PF10497 zf-4CXXC_R1: Zinc-fin 41.0 18 0.00038 26.4 1.5 24 166-189 37-69 (105)
144 PF08853 DUF1823: Domain of un 40.2 11 0.00024 28.0 0.3 13 11-23 78-90 (116)
145 PLN02189 cellulose synthase 38.9 23 0.0005 35.7 2.4 46 147-192 34-87 (1040)
146 KOG3799 Rab3 effector RIM1 and 38.8 9.3 0.0002 29.3 -0.2 44 144-190 62-116 (169)
147 cd04894 ACT_ACR-like_1 ACT dom 37.8 18 0.00038 24.2 1.0 12 8-19 54-65 (69)
148 COG4647 AcxC Acetone carboxyla 37.4 18 0.00039 27.6 1.1 21 152-172 62-82 (165)
149 PF09723 Zn-ribbon_8: Zinc rib 36.9 6.3 0.00014 23.7 -1.1 30 164-194 10-40 (42)
150 KOG4718 Non-SMC (structural ma 36.1 23 0.00049 29.3 1.6 47 144-190 178-225 (235)
151 KOG1356 Putative transcription 35.1 20 0.00044 35.2 1.3 33 146-178 228-262 (889)
152 PLN02436 cellulose synthase A 34.2 27 0.00058 35.4 2.1 46 147-192 36-89 (1094)
153 KOG1526 NADP-dependent isocitr 33.8 21 0.00044 31.3 1.1 20 1-20 24-43 (422)
154 COG4306 Uncharacterized protei 33.6 23 0.00049 26.9 1.1 23 168-193 29-51 (160)
155 PF13248 zf-ribbon_3: zinc-rib 33.5 5.8 0.00012 21.3 -1.5 7 183-189 18-24 (26)
156 COG3492 Uncharacterized protei 33.5 25 0.00053 25.2 1.2 13 168-180 42-54 (104)
157 KOG1609 Protein involved in mR 33.5 58 0.0013 27.5 3.8 47 146-192 77-134 (323)
158 cd00350 rubredoxin_like Rubred 33.4 22 0.00048 20.0 0.9 14 182-195 18-31 (33)
159 KOG1829 Uncharacterized conser 31.8 13 0.00028 35.1 -0.5 22 164-188 536-557 (580)
160 PF09297 zf-NADH-PPase: NADH p 30.7 4.8 0.0001 22.6 -2.3 23 167-189 3-29 (32)
161 smart00132 LIM Zinc-binding do 29.9 45 0.00097 18.4 1.8 34 150-191 2-37 (39)
162 PLN02248 cellulose synthase-li 29.8 36 0.00078 34.7 2.1 31 162-192 145-177 (1135)
163 KOG2169 Zn-finger transcriptio 29.7 38 0.00083 32.4 2.3 50 143-192 302-356 (636)
164 smart00647 IBR In Between Ring 29.3 9 0.00019 24.3 -1.5 14 164-177 45-58 (64)
165 PF10083 DUF2321: Uncharacteri 27.7 34 0.00075 26.8 1.3 24 167-193 28-51 (158)
166 PF01363 FYVE: FYVE zinc finge 27.6 19 0.0004 23.6 -0.2 31 147-177 9-43 (69)
167 cd00065 FYVE FYVE domain; Zinc 27.1 39 0.00085 21.0 1.3 31 149-179 4-38 (57)
168 PF02318 FYVE_2: FYVE-type zin 26.2 34 0.00074 25.2 1.0 43 146-189 53-102 (118)
169 COG2816 NPY1 NTP pyrophosphohy 26.0 16 0.00035 31.3 -0.9 26 166-191 110-139 (279)
170 TIGR03193 4hydroxCoAred 4-hydr 25.7 49 0.0011 25.7 1.8 25 4-28 15-45 (148)
171 PLN00096 isocitrate dehydrogen 25.6 36 0.00078 30.7 1.2 22 1-22 4-25 (393)
172 KOG0801 Predicted E3 ubiquitin 24.4 24 0.00053 28.0 -0.1 25 146-170 176-203 (205)
173 smart00064 FYVE Protein presen 23.9 53 0.0011 21.3 1.5 32 148-179 11-46 (68)
174 smart00249 PHD PHD zinc finger 23.5 32 0.00069 19.8 0.4 27 150-176 2-31 (47)
175 KOG2789 Putative Zn-finger pro 22.7 1E+02 0.0022 28.0 3.4 32 146-177 73-106 (482)
176 COG2080 CoxS Aerobic-type carb 22.4 61 0.0013 25.4 1.8 25 4-28 17-47 (156)
177 smart00734 ZnF_Rad18 Rad18-lik 20.9 44 0.00095 17.9 0.5 9 183-191 3-11 (26)
178 KOG2066 Vacuolar assembly/sort 20.7 41 0.00088 33.0 0.6 40 147-187 784-830 (846)
179 PF13901 DUF4206: Domain of un 20.7 45 0.00098 27.0 0.8 38 146-188 151-196 (202)
180 COG0068 HypF Hydrogenase matur 20.5 58 0.0013 31.7 1.6 48 144-191 98-183 (750)
181 PLN02638 cellulose synthase A 20.3 82 0.0018 32.1 2.6 46 147-192 17-70 (1079)
182 PF14369 zf-RING_3: zinc-finge 20.1 17 0.00038 21.0 -1.3 26 168-193 3-33 (35)
No 1
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.28 E-value=2.1e-12 Score=82.35 Aligned_cols=48 Identities=35% Similarity=0.961 Sum_probs=42.7
Q ss_pred CcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEI 194 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~ 194 (198)
+..|.||++...+.+++||||. ||..|+.+|+.....||+||++|.++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4579999999999999999999 99999999999888999999998764
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.26 E-value=5.3e-12 Score=101.28 Aligned_cols=55 Identities=27% Similarity=0.827 Sum_probs=46.4
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhc----------------CCCCCCCcccccc--ccccC
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN----------------RGTCPICNRSIIE--ILDIF 198 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~----------------~~~CP~Cr~~i~~--~l~iy 198 (198)
..+++.|+||++.+.++++++|||.||..||..|+.. ...||+||..+.. +++||
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3457899999999999999999999999999999752 2389999999864 56655
No 3
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.1e-12 Score=99.42 Aligned_cols=54 Identities=28% Similarity=0.787 Sum_probs=47.2
Q ss_pred CCCcccccccccCcce--EEcCCCCcchHhhHHHHHhcCCCCCCCccccc--cccccC
Q 036555 145 GSDWMCCVCMERNKGA--AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII--EILDIF 198 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~--~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~--~~l~iy 198 (198)
+..+.|+|||+.+... +.+.|||.||..||+..+++...||+|++.|. ++++||
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3558999999998765 55899999999999999999999999998875 688888
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.22 E-value=8.6e-12 Score=76.84 Aligned_cols=38 Identities=42% Similarity=1.206 Sum_probs=31.3
Q ss_pred cccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCC
Q 036555 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPIC 187 (198)
Q Consensus 150 C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~C 187 (198)
|+||++.+.+|+.++|||+||..||.+++.... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998653 68887
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.6e-12 Score=101.65 Aligned_cols=55 Identities=25% Similarity=0.777 Sum_probs=48.7
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC---CCCCCccccc--cccccC
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSII--EILDIF 198 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~---~CP~Cr~~i~--~~l~iy 198 (198)
....+.|.||++.-++||++.|||.||+.||.+|+..+. .||+|+..+. ++++||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 357899999999999999999999999999999998544 8899999875 578887
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.4e-11 Score=101.20 Aligned_cols=54 Identities=26% Similarity=0.734 Sum_probs=48.7
Q ss_pred ccccCCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 140 LTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 140 ~~~~~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
......+...|.+|++...+|..+||||.||..||..|...+..||+||..+..
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 334566788999999999999999999999999999999999999999999864
No 7
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.12 E-value=3.2e-11 Score=74.78 Aligned_cols=40 Identities=33% Similarity=0.947 Sum_probs=35.6
Q ss_pred ccccccccCc---ceEEcCCCCcchHhhHHHHHhcCCCCCCCc
Q 036555 149 MCCVCMERNK---GAAFIPCGHTFCRVCSRDLWLNRGTCPICN 188 (198)
Q Consensus 149 ~C~IC~~~~~---~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr 188 (198)
.|+||++.+. ..+.++|+|.||..|+.+|+....+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999885 458889999999999999999999999997
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.11 E-value=4.8e-11 Score=72.19 Aligned_cols=38 Identities=32% Similarity=1.065 Sum_probs=33.9
Q ss_pred cccccccCcce-EEcCCCCcchHhhHHHHHhcCCCCCCC
Q 036555 150 CCVCMERNKGA-AFIPCGHTFCRVCSRDLWLNRGTCPIC 187 (198)
Q Consensus 150 C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~~~~~~CP~C 187 (198)
|+||++.+.++ ++++|||.||..|+.+|+.....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 789999999999999999997899987
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.06 E-value=1.3e-10 Score=96.64 Aligned_cols=51 Identities=29% Similarity=0.752 Sum_probs=43.7
Q ss_pred CCcccccccccCcc--------eEEcCCCCcchHhhHHHHHhcCCCCCCCccccccccc
Q 036555 146 SDWMCCVCMERNKG--------AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILD 196 (198)
Q Consensus 146 ~~~~C~IC~~~~~~--------~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~ 196 (198)
.+..|+||++.+.+ ++.++|+|.||..|+.+|+....+||+||..+..+++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 45689999998654 2566899999999999999988899999999987654
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.02 E-value=3.2e-10 Score=75.11 Aligned_cols=46 Identities=24% Similarity=0.562 Sum_probs=42.9
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
++.|+||.+.+.+|+.++|||+||..||.+|+.....||+|+.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 3579999999999999999999999999999998889999999884
No 11
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.6e-10 Score=73.90 Aligned_cols=51 Identities=29% Similarity=0.778 Sum_probs=46.6
Q ss_pred cccccccccCcceEEcCCCCc-chHhhHHHHHh-cCCCCCCCccccccccccC
Q 036555 148 WMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWL-NRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~-~~~~CP~Cr~~i~~~l~iy 198 (198)
..|.||++...+.++.-|||. +|+.|-.+.++ .+..||+||++|.++++.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 579999999999999999998 99999999888 5569999999999999876
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.92 E-value=9.1e-10 Score=67.00 Aligned_cols=38 Identities=39% Similarity=1.106 Sum_probs=34.6
Q ss_pred cccccccCcceE-EcCCCCcchHhhHHHHHh--cCCCCCCC
Q 036555 150 CCVCMERNKGAA-FIPCGHTFCRVCSRDLWL--NRGTCPIC 187 (198)
Q Consensus 150 C~IC~~~~~~~~-~lpCgH~FC~~Ci~~~~~--~~~~CP~C 187 (198)
|+||++.+.+++ +++|||.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 999999999999999999 33499987
No 13
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.1e-09 Score=97.26 Aligned_cols=50 Identities=28% Similarity=0.676 Sum_probs=45.4
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+...+.|+||++.+..|++++|||.||..|+..|+.....||+|+..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 45678999999999999999999999999999999887899999998753
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.84 E-value=2.6e-09 Score=65.07 Aligned_cols=43 Identities=35% Similarity=0.966 Sum_probs=36.4
Q ss_pred ccccccccCcceEEcC-CCCcchHhhHHHHHhc-CCCCCCCcccc
Q 036555 149 MCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLN-RGTCPICNRSI 191 (198)
Q Consensus 149 ~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~-~~~CP~Cr~~i 191 (198)
.|+||++.+..++.++ |||.||..|+..|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4899999996665555 9999999999999987 56899998764
No 15
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.4e-10 Score=103.40 Aligned_cols=56 Identities=32% Similarity=0.694 Sum_probs=50.8
Q ss_pred cCCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccc--ccccccC
Q 036555 143 REGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI--IEILDIF 198 (198)
Q Consensus 143 ~~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i--~~~l~iy 198 (198)
.+.+.+.|++|..++++.+.+.|||.||..|+...+..+. +||.|+++| .++++||
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 3567889999999999999999999999999999988766 999999999 4799988
No 16
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.81 E-value=1.4e-09 Score=93.31 Aligned_cols=49 Identities=31% Similarity=0.752 Sum_probs=45.2
Q ss_pred CCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
..-+.|-||.+.|..|+.+||+|+||..||...+..+..||.|+.++.+
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 3456899999999999999999999999999999999999999998864
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.79 E-value=3.5e-09 Score=86.37 Aligned_cols=52 Identities=27% Similarity=0.601 Sum_probs=41.4
Q ss_pred CCCCcccccccccCcc---------eEEcCCCCcchHhhHHHHHhcC------CCCCCCcccccccc
Q 036555 144 EGSDWMCCVCMERNKG---------AAFIPCGHTFCRVCSRDLWLNR------GTCPICNRSIIEIL 195 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~---------~~~lpCgH~FC~~Ci~~~~~~~------~~CP~Cr~~i~~~l 195 (198)
...+..|+||++.... +++.+|+|.||..||..|...+ ..||+||..+..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3456799999987532 3677999999999999999853 26999999987543
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.76 E-value=6e-09 Score=64.63 Aligned_cols=41 Identities=34% Similarity=0.951 Sum_probs=35.0
Q ss_pred ccccccccC---cceEEcCCCCcchHhhHHHHHhcCCCCCCCcc
Q 036555 149 MCCVCMERN---KGAAFIPCGHTFCRVCSRDLWLNRGTCPICNR 189 (198)
Q Consensus 149 ~C~IC~~~~---~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~ 189 (198)
.|+||++.+ ..+.+++|||.||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 389999998 35689999999999999999855569999985
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.75 E-value=1e-08 Score=60.23 Aligned_cols=38 Identities=50% Similarity=1.221 Sum_probs=34.2
Q ss_pred cccccccCcceEEcCCCCcchHhhHHHHHh-cCCCCCCC
Q 036555 150 CCVCMERNKGAAFIPCGHTFCRVCSRDLWL-NRGTCPIC 187 (198)
Q Consensus 150 C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~-~~~~CP~C 187 (198)
|+||++....++.++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988999999999999999999998 44589987
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.75 E-value=5.8e-09 Score=64.43 Aligned_cols=35 Identities=37% Similarity=0.985 Sum_probs=22.4
Q ss_pred cccccccCcc----eEEcCCCCcchHhhHHHHHhcCC----CCC
Q 036555 150 CCVCMERNKG----AAFIPCGHTFCRVCSRDLWLNRG----TCP 185 (198)
Q Consensus 150 C~IC~~~~~~----~~~lpCgH~FC~~Ci~~~~~~~~----~CP 185 (198)
|+||.+ +.+ |+.|+|||+||..|+.+++.... +||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 89999999999999999998542 665
No 21
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.71 E-value=4.6e-09 Score=88.56 Aligned_cols=50 Identities=32% Similarity=0.618 Sum_probs=45.7
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+...+.|-||-+++..|+.++|||+||+.||...+..+..||+||.+..+
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 44567999999999999999999999999999999999999999998754
No 22
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.70 E-value=1.3e-08 Score=70.05 Aligned_cols=40 Identities=33% Similarity=0.818 Sum_probs=33.8
Q ss_pred ccccccccCcc-------------eEEcCCCCcchHhhHHHHHhcCCCCCCCc
Q 036555 149 MCCVCMERNKG-------------AAFIPCGHTFCRVCSRDLWLNRGTCPICN 188 (198)
Q Consensus 149 ~C~IC~~~~~~-------------~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr 188 (198)
.|.||++.+.+ .+..+|||.||..||.+|+....+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 59999998832 14568999999999999999999999997
No 23
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.6e-08 Score=87.51 Aligned_cols=53 Identities=32% Similarity=0.920 Sum_probs=49.4
Q ss_pred CCcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
+...|.||+...++.+++||.|. .|..|.+........||+||.+|.+.+.||
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 45689999999999999999998 999999999888889999999999999886
No 24
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.2e-08 Score=87.20 Aligned_cols=46 Identities=28% Similarity=0.731 Sum_probs=40.3
Q ss_pred cccccccccCcce---EEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 148 WMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 148 ~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
..|.||+|.|... ..|||.|.||..||..|+.... .||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4899999999864 6689999999999999998775 69999987754
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.5e-08 Score=91.18 Aligned_cols=52 Identities=35% Similarity=0.865 Sum_probs=45.3
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-----CCCCCcccccc--ccccC
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-----TCPICNRSIIE--ILDIF 198 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-----~CP~Cr~~i~~--~l~iy 198 (198)
+..||||++...-|+.+.|||.||..||..+|.... .||+|+..|.- ++.||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 789999999999999999999999999999987652 99999998864 55553
No 26
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.62 E-value=2.4e-08 Score=68.61 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=39.8
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhc-CCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN-RGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~~ 193 (198)
+.+.|+|+.+.+.+|+.+++||+|++.+|..|+.. ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 46799999999999999999999999999999998 6799999998865
No 27
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4e-08 Score=85.40 Aligned_cols=48 Identities=33% Similarity=0.798 Sum_probs=41.6
Q ss_pred CCCCcccccccccCc-------------ceEEcCCCCcchHhhHHHHHhcCCCCCCCcccc
Q 036555 144 EGSDWMCCVCMERNK-------------GAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~-------------~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
...+..|.|||+... .|..+||||.||..|++.|+...++||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 346789999999743 247899999999999999999999999999984
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.7e-08 Score=81.02 Aligned_cols=50 Identities=28% Similarity=0.698 Sum_probs=43.0
Q ss_pred cCCCCcccccccccCcceEEcCCCCcchHhhHHH-HHhcCC-CCCCCccccc
Q 036555 143 REGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRD-LWLNRG-TCPICNRSII 192 (198)
Q Consensus 143 ~~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~-~~~~~~-~CP~Cr~~i~ 192 (198)
....++.|.||++....++.++|||.||..||.. |-..+. .||+||+...
T Consensus 211 ip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 211 IPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 3467899999999999999999999999999999 655555 5999998753
No 29
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.3e-08 Score=81.83 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=40.4
Q ss_pred CCcccccccccCcce---EEcCCCCcchHhhHHHHHh-cCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWL-NRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~-~~~~CP~Cr~~i~ 192 (198)
..-.|.|||+.+... +.+||.|.||..|+.+|+. .+..||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 346899999988643 7889999999999999998 5669999999874
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.8e-08 Score=79.88 Aligned_cols=45 Identities=33% Similarity=0.989 Sum_probs=40.4
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICN 188 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr 188 (198)
..+.+.|+||++.+..|..++|+|+||..|+..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccC
Confidence 446789999999999999999999999999999988444999999
No 31
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-07 Score=80.10 Aligned_cols=48 Identities=33% Similarity=1.052 Sum_probs=44.8
Q ss_pred CcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 147 DWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
...|.|||+...+.+||+|||. -|..|-.++ ..||+||+.|..+.+||
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhhh
Confidence 6789999999999999999997 899998887 58999999999999998
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.5e-07 Score=84.79 Aligned_cols=47 Identities=34% Similarity=0.820 Sum_probs=42.8
Q ss_pred CCCcccccccccCcc-----eEEcCCCCcchHhhHHHHHhcCCCCCCCcccc
Q 036555 145 GSDWMCCVCMERNKG-----AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~-----~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
..+..|+||++.+.. +..++|+|.||..|+..|+....+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346799999999988 79999999999999999999999999999954
No 33
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.26 E-value=8.9e-07 Score=62.24 Aligned_cols=46 Identities=26% Similarity=0.641 Sum_probs=36.4
Q ss_pred CcccccccccCcc------------e-EEcCCCCcchHhhHHHHHhcC---CCCCCCccccc
Q 036555 147 DWMCCVCMERNKG------------A-AFIPCGHTFCRVCSRDLWLNR---GTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~------------~-~~lpCgH~FC~~Ci~~~~~~~---~~CP~Cr~~i~ 192 (198)
+..|.||...|.. | +.-.|+|.|+..||.+|+... +.||+||+++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5578888877762 1 444799999999999999853 59999998863
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.07 E-value=6.6e-07 Score=59.46 Aligned_cols=44 Identities=30% Similarity=0.714 Sum_probs=24.6
Q ss_pred CCcccccccccCcceEE-cCCCCcchHhhHHHHHhcCCCCCCCcccc
Q 036555 146 SDWMCCVCMERNKGAAF-IPCGHTFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~-lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
+-+.|++|.+.+..|+. ..|.|.||+.|+..-+. ..||+|+.+.
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 35689999999999974 67999999999977544 4699999885
No 35
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.2e-07 Score=78.06 Aligned_cols=49 Identities=22% Similarity=0.597 Sum_probs=41.9
Q ss_pred CCCcccccccccCcceEEcC-CCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
..++.|+||++.++....++ |.|.||..||...+...+ .||.||+.+..
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 45679999999999887766 999999999998887555 99999998754
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.3e-06 Score=76.22 Aligned_cols=49 Identities=33% Similarity=0.868 Sum_probs=44.9
Q ss_pred CCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
..++.|.||+..+..|+.+||||.||..||.+.+.....||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4688999999999999999999999999999988877799999999875
No 37
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.90 E-value=3.6e-06 Score=67.77 Aligned_cols=48 Identities=21% Similarity=0.760 Sum_probs=43.1
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
-.+.|.||...|..|+++.|||.||..|...-+.....|-+|.+....
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 357999999999999999999999999999888888899999887654
No 38
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1e-05 Score=70.23 Aligned_cols=50 Identities=28% Similarity=0.716 Sum_probs=46.3
Q ss_pred CCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccccc
Q 036555 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEI 194 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~ 194 (198)
.++..|+||+-...++++.||+|.-|+.||.+.+.+.+.|-.|+..+.++
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 57789999999999999999999999999999999999999999887653
No 39
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.78 E-value=6.6e-06 Score=70.77 Aligned_cols=50 Identities=28% Similarity=0.549 Sum_probs=44.6
Q ss_pred CCcccccccccCcceEEcC-CCCcchHhhHHHHHhcCCCCCCCcccccccc
Q 036555 146 SDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l 195 (198)
....|.+|-..+.++..+. |-|+||..||.+.+.....||.|+..+.+..
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 4568999999999996665 9999999999999999899999999987754
No 40
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.2e-05 Score=69.93 Aligned_cols=50 Identities=32% Similarity=0.805 Sum_probs=40.3
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
....|.||.+.+.+.+++||||+-| |..-.... ..||+||..|..++++|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l-~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL-PQCPVCRQRIRLVRKRY 353 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhC-CCCchhHHHHHHHHHHh
Confidence 4568999999999999999999855 55433222 46999999999988887
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.64 E-value=2.1e-05 Score=69.37 Aligned_cols=47 Identities=32% Similarity=0.743 Sum_probs=41.6
Q ss_pred cccccccccCcceEEcCCCCcchHhhHHHHHhcC--CCCCCCccccccc
Q 036555 148 WMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR--GTCPICNRSIIEI 194 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~--~~CP~Cr~~i~~~ 194 (198)
..|.||-+.-++...-||||..|..|+..|...+ .+||+||..|...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 4799999999999899999999999999998654 4999999998653
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.8e-05 Score=68.11 Aligned_cols=51 Identities=31% Similarity=0.698 Sum_probs=41.5
Q ss_pred CCCCcccccccccCcceE-----E---cCCCCcchHhhHHHHHh--c-----CCCCCCCccccccc
Q 036555 144 EGSDWMCCVCMERNKGAA-----F---IPCGHTFCRVCSRDLWL--N-----RGTCPICNRSIIEI 194 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~-----~---lpCgH~FC~~Ci~~~~~--~-----~~~CP~Cr~~i~~~ 194 (198)
...+..|.||++...... + .+|.|.||..||..|.. . ...||.||.....+
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 356789999999887765 4 67999999999999983 3 34999999887654
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=1.7e-05 Score=67.41 Aligned_cols=49 Identities=22% Similarity=0.643 Sum_probs=43.7
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l 195 (198)
.+.|-||...|..||++.|+|.||..|...-+.....|.+|.+.+..++
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 4579999999999999999999999999988888789999998876543
No 44
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=5.2e-05 Score=63.83 Aligned_cols=49 Identities=35% Similarity=0.648 Sum_probs=41.1
Q ss_pred CCCCcccccccccCcceEEc-CCCCcchHhhHHHHHhcC--CCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNR--GTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~--~~CP~Cr~~i~ 192 (198)
...+.+|++|.+....|..+ +|+|.||+.|+......+ .+||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45678999999999999655 599999999998877654 49999998765
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.53 E-value=3.3e-05 Score=68.87 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=39.3
Q ss_pred cCCCCcccccccccCcce----EEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 143 REGSDWMCCVCMERNKGA----AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 143 ~~~~~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
...+-.+|+||++++..- +.+.|.|.|+..|+..|+. .+||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 455677999999998754 4668999999999999965 68999996544
No 46
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.53 E-value=3.7e-05 Score=68.71 Aligned_cols=51 Identities=25% Similarity=0.720 Sum_probs=45.3
Q ss_pred CCCCcccccccccCcceEE-cCCCCcchHhhHHHHHhcCCCCCCCccccccc
Q 036555 144 EGSDWMCCVCMERNKGAAF-IPCGHTFCRVCSRDLWLNRGTCPICNRSIIEI 194 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~-lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~ 194 (198)
..+++.|++|+..+.+|+. +.|||.||..|+..|......||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 4567899999999999988 49999999999999999988999998877543
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=5.6e-05 Score=68.21 Aligned_cols=49 Identities=24% Similarity=0.555 Sum_probs=39.5
Q ss_pred CCCcccccccccCc-----------------ceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 145 GSDWMCCVCMERNK-----------------GAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~-----------------~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
.....|+|||.... +-.++||.|.|+..|+..|+...+ .||+||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45678999998653 125679999999999999999555 99999998753
No 48
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.39 E-value=0.00012 Score=47.79 Aligned_cols=41 Identities=22% Similarity=0.478 Sum_probs=29.2
Q ss_pred CCcccccccccCcceEEc-CCCCcchHhhHHHHHhcCC--CCCC
Q 036555 146 SDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNRG--TCPI 186 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~~--~CP~ 186 (198)
-.+.|||.+..+.+|+.- .|+|+|....|..++.... .||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457899999999999774 8999999999999994333 9998
No 49
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.37 E-value=3.4e-05 Score=52.55 Aligned_cols=46 Identities=26% Similarity=0.723 Sum_probs=23.5
Q ss_pred CcccccccccCc-c---eEE----cCCCCcchHhhHHHHHhcC-----------CCCCCCccccc
Q 036555 147 DWMCCVCMERNK-G---AAF----IPCGHTFCRVCSRDLWLNR-----------GTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~-~---~~~----lpCgH~FC~~Ci~~~~~~~-----------~~CP~Cr~~i~ 192 (198)
+..|.||+.... + +.. ..|++.||..|+.+|+... +.||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999998754 2 211 2699999999999998731 17999999875
No 50
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.32 E-value=0.00026 Score=44.80 Aligned_cols=40 Identities=25% Similarity=0.676 Sum_probs=31.9
Q ss_pred ccccccc--cCcceEEcCCC-----CcchHhhHHHHHhcCC--CCCCCc
Q 036555 149 MCCVCME--RNKGAAFIPCG-----HTFCRVCSRDLWLNRG--TCPICN 188 (198)
Q Consensus 149 ~C~IC~~--~~~~~~~lpCg-----H~FC~~Ci~~~~~~~~--~CP~Cr 188 (198)
.|-||++ ...++...||. |.|+..|+.+|+.... +||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 34456788985 7799999999997654 999994
No 51
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.31 E-value=0.00018 Score=49.76 Aligned_cols=29 Identities=24% Similarity=0.637 Sum_probs=26.9
Q ss_pred CCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 164 PCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 164 pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
-|.|.|+..||.+|+..++.||++|+.+.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 59999999999999999999999998863
No 52
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.23 E-value=7.2e-05 Score=70.73 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=41.7
Q ss_pred CCcccccccccCcce---EEcCCCCcchHhhHHHHHhcCCCCCCCcccccccc
Q 036555 146 SDWMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l 195 (198)
....|++|+..+.+. ...+|+|.||..|+..|-....+||+||..|.+++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 345788998776654 34579999999999999999999999999998764
No 53
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00028 Score=59.47 Aligned_cols=47 Identities=30% Similarity=0.712 Sum_probs=37.9
Q ss_pred CCcccccccccCc----------ceEEcCCCCcchHhhHHHHHhc--CCCCCCCccccc
Q 036555 146 SDWMCCVCMERNK----------GAAFIPCGHTFCRVCSRDLWLN--RGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~----------~~~~lpCgH~FC~~Ci~~~~~~--~~~CP~Cr~~i~ 192 (198)
++..|.||-..+. +...+.|+|.|+..||+.|..- .++||.|+..++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 5678999987654 3367899999999999999764 449999988764
No 54
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.94 E-value=0.00049 Score=43.31 Aligned_cols=42 Identities=36% Similarity=0.911 Sum_probs=21.4
Q ss_pred cccccccCcc--eEEcC--CCCcchHhhHHHHHh-cCCCCCCCcccc
Q 036555 150 CCVCMERNKG--AAFIP--CGHTFCRVCSRDLWL-NRGTCPICNRSI 191 (198)
Q Consensus 150 C~IC~~~~~~--~~~lp--CgH~FC~~Ci~~~~~-~~~~CP~Cr~~i 191 (198)
|++|.+.+.. ..+.| |++.+|..|....+. ..+.||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6788887732 24555 788899999999887 466999999876
No 55
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.90 E-value=0.00035 Score=63.81 Aligned_cols=47 Identities=26% Similarity=0.687 Sum_probs=40.1
Q ss_pred CCCcccccccccCcceEEcCCCCcchHhhHHHHHhcC-----CCCCCCcccc
Q 036555 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNR-----GTCPICNRSI 191 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~-----~~CP~Cr~~i 191 (198)
.+...|.+|.+.-.+++...|.|.||..|+.++...- .+||.|-..+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3566899999999999999999999999998887632 3999997665
No 56
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00081 Score=56.04 Aligned_cols=49 Identities=16% Similarity=0.419 Sum_probs=44.2
Q ss_pred CCCcccccccccCcce----EEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGA----AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
...+.|+||.+.+.+. ++.||||+||..|+.+++..+..||+|..++.+
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 3678999999999875 777999999999999999999999999999875
No 57
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00079 Score=48.82 Aligned_cols=27 Identities=30% Similarity=0.666 Sum_probs=25.6
Q ss_pred CCCCcchHhhHHHHHhcCCCCCCCccc
Q 036555 164 PCGHTFCRVCSRDLWLNRGTCPICNRS 190 (198)
Q Consensus 164 pCgH~FC~~Ci~~~~~~~~~CP~Cr~~ 190 (198)
-|.|.|+..||.+|++.+..||+|++.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999999999999999876
No 58
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.79 E-value=0.00045 Score=66.80 Aligned_cols=48 Identities=19% Similarity=0.547 Sum_probs=37.1
Q ss_pred CCCcccccccccCc-------ceEEcCCCCcchHhhHHHHHhcCC--CCCCCccccc
Q 036555 145 GSDWMCCVCMERNK-------GAAFIPCGHTFCRVCSRDLWLNRG--TCPICNRSII 192 (198)
Q Consensus 145 ~~~~~C~IC~~~~~-------~~~~lpCgH~FC~~Ci~~~~~~~~--~CP~Cr~~i~ 192 (198)
.....|+||+.... ....-.|.|.||..|+.+|++... +||+||..|.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45668999997654 112234999999999999999655 9999998764
No 59
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.71 E-value=0.00069 Score=43.68 Aligned_cols=44 Identities=25% Similarity=0.670 Sum_probs=35.8
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
...|..|...-...+++||||..|..|..-... +.||+|.++|.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY--ngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGERY--NGCPFCGTPFE 50 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhhc--cCCCCCCCccc
Confidence 346888888878889999999999999765433 58999999875
No 60
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.65 E-value=0.00096 Score=57.09 Aligned_cols=42 Identities=36% Similarity=0.786 Sum_probs=36.8
Q ss_pred cccccccccCcceEEcC-CCCcchHhhHHHHHh-cCCCCCCCcc
Q 036555 148 WMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWL-NRGTCPICNR 189 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~-~~~~CP~Cr~ 189 (198)
+.|+.|...+.+++.+| |+|.||..||...+. .+..||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 89999999999999886 899999999987665 5569999965
No 61
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.62 E-value=0.0018 Score=54.75 Aligned_cols=49 Identities=24% Similarity=0.627 Sum_probs=39.7
Q ss_pred CCCCcccccccccCcc----eEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKG----AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~----~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
....+.|||....+.. .++.||||+|+..++.++- ....||+|..+|..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence 4467899999988854 2566999999999999984 35589999999864
No 62
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.00048 Score=47.26 Aligned_cols=44 Identities=25% Similarity=0.580 Sum_probs=33.0
Q ss_pred ccccccccCcc------------eEEc-CCCCcchHhhHHHHHhcC---CCCCCCccccc
Q 036555 149 MCCVCMERNKG------------AAFI-PCGHTFCRVCSRDLWLNR---GTCPICNRSII 192 (198)
Q Consensus 149 ~C~IC~~~~~~------------~~~l-pCgH~FC~~Ci~~~~~~~---~~CP~Cr~~i~ 192 (198)
.|.||.-.|.. |.++ -|.|.|+..||.+|+... ..||+||..+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 68888766653 1222 499999999999999743 39999998753
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0019 Score=57.31 Aligned_cols=36 Identities=39% Similarity=1.094 Sum_probs=30.6
Q ss_pred CCCCcccccccccCcc---eEEcCCCCcchHhhHHHHHh
Q 036555 144 EGSDWMCCVCMERNKG---AAFIPCGHTFCRVCSRDLWL 179 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~---~~~lpCgH~FC~~Ci~~~~~ 179 (198)
...-+.|.||++.... -+++||+|.||..|+...+.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 3456799999998876 38999999999999988765
No 64
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0021 Score=55.61 Aligned_cols=53 Identities=23% Similarity=0.620 Sum_probs=43.0
Q ss_pred CCcccccccccCcceEEcC-CCCcchHhhHHHHHhcCCCCCCCcccc--ccccccC
Q 036555 146 SDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNRGTCPICNRSI--IEILDIF 198 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~~~CP~Cr~~i--~~~l~iy 198 (198)
....|+||+....+|..+. -|-+||+.|+-..+.+.+.||+=..++ ..++++|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 4568999999998885555 599999999999999999999876654 4566655
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.29 E-value=0.0037 Score=54.57 Aligned_cols=48 Identities=27% Similarity=0.738 Sum_probs=40.1
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHH--HhcCCCCCCCccccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDL--WLNRGTCPICNRSIIEI 194 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~--~~~~~~CP~Cr~~i~~~ 194 (198)
...|.||.+...-..++||+|..|..|..+. ++..+.||+||..-..+
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 3479999999999999999999999998654 55777999999875543
No 66
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0017 Score=53.27 Aligned_cols=46 Identities=30% Similarity=0.830 Sum_probs=38.4
Q ss_pred ccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 149 MCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 149 ~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
.|-+|.+.-...+++||.|. +|..|-... ..||+|+.+....+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence 39999999999999999998 999997542 57999998887766554
No 67
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.90 E-value=0.0057 Score=46.45 Aligned_cols=47 Identities=30% Similarity=0.858 Sum_probs=41.0
Q ss_pred CcccccccccCcceEEcC----CCCcchHhhHHHHHhcCC---CCCCCcccccc
Q 036555 147 DWMCCVCMERNKGAAFIP----CGHTFCRVCSRDLWLNRG---TCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lp----CgH~FC~~Ci~~~~~~~~---~CP~Cr~~i~~ 193 (198)
-.+|.||.+...+..|+. ||-..|..|...+|+... .||+|+.+|..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 468999999999988874 999999999999998654 99999999864
No 68
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.81 E-value=0.0039 Score=59.36 Aligned_cols=45 Identities=27% Similarity=0.744 Sum_probs=39.4
Q ss_pred cccccccccCcceEEcCCCCcchHhhHHHHHhcCC--CCCCCcccccc
Q 036555 148 WMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG--TCPICNRSIIE 193 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~--~CP~Cr~~i~~ 193 (198)
..|.||++ ...++.++|+|.||..|+...+.... .||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 88889999999999999999887555 79999987753
No 69
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.66 E-value=0.0041 Score=55.04 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=37.6
Q ss_pred CCcccccccccCc----ceEEcCCCCcchHhhHHHHHhcCC--CCCCCccccc
Q 036555 146 SDWMCCVCMERNK----GAAFIPCGHTFCRVCSRDLWLNRG--TCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~----~~~~lpCgH~FC~~Ci~~~~~~~~--~CP~Cr~~i~ 192 (198)
-.+.|..|-+.+- .--.+||.|.||..|+.+++.+.. +||.||+-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4578999987653 225689999999999999998665 9999996554
No 70
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.52 E-value=0.0086 Score=51.75 Aligned_cols=45 Identities=31% Similarity=0.718 Sum_probs=36.3
Q ss_pred CCcccccccccCcceEEcCC--CCcchHhhHHHHHhcCCCCCCCccccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPC--GHTFCRVCSRDLWLNRGTCPICNRSIIEI 194 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpC--gH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~ 194 (198)
+-+.||||.+.+..|++ .| ||..|..|-.+. ...||.||.+|..+
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHlaCssC~~~~---~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHLACSSCRTKV---SNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcEehhhhhhhh---cccCCccccccccH
Confidence 45689999999999866 55 799999997643 46999999998743
No 71
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.07 E-value=0.0066 Score=37.92 Aligned_cols=45 Identities=29% Similarity=0.693 Sum_probs=26.8
Q ss_pred ccccccccCcceEEcCCC-CcchHhhHHHHHhcCCCCCCCcccccccc
Q 036555 149 MCCVCMERNKGAAFIPCG-HTFCRVCSRDLWLNRGTCPICNRSIIEIL 195 (198)
Q Consensus 149 ~C~IC~~~~~~~~~lpCg-H~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l 195 (198)
.|.-|.-..+ -++.|. |..|..|+..++.....||+|..++...+
T Consensus 4 nCKsCWf~~k--~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANK--GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--S--SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCC--CeeeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 4666654444 366787 66899999999999999999999987655
No 72
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.033 Score=46.02 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=36.6
Q ss_pred cccccccccCc--ceEEcCCCCcchHhhHHHHHhcCC--------CCCCCccccc
Q 036555 148 WMCCVCMERNK--GAAFIPCGHTFCRVCSRDLWLNRG--------TCPICNRSII 192 (198)
Q Consensus 148 ~~C~IC~~~~~--~~~~lpCgH~FC~~Ci~~~~~~~~--------~CP~Cr~~i~ 192 (198)
-.|.+|...+. +.+.+-|.|.|+..|+.+|-.+-. .||.|...|.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 36999988776 458889999999999999977422 9999988763
No 73
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.012 Score=50.16 Aligned_cols=48 Identities=31% Similarity=0.830 Sum_probs=39.0
Q ss_pred CCCCcccccccccCcceEEcCC----CCcchHhhHHHHHhcCC-----------CCCCCcccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPC----GHTFCRVCSRDLWLNRG-----------TCPICNRSI 191 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpC----gH~FC~~Ci~~~~~~~~-----------~CP~Cr~~i 191 (198)
....+.|.+|.+++.+.-|+.| .|.||..|..+.++... +||+-...+
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 3466899999999999999888 48899999999888543 777766554
No 74
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.012 Score=50.79 Aligned_cols=45 Identities=31% Similarity=0.747 Sum_probs=31.6
Q ss_pred cccccccccCc-ceEEcCCCCcchHhhHHHHHhcCCCCCCCccccccc
Q 036555 148 WMCCVCMERNK-GAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEI 194 (198)
Q Consensus 148 ~~C~IC~~~~~-~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~ 194 (198)
..|.-|--... -..++||.|.||++|... ...+.||.|.-.+..+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 35666744332 346789999999999743 3467999997766544
No 75
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.78 E-value=0.011 Score=49.36 Aligned_cols=47 Identities=28% Similarity=0.686 Sum_probs=35.5
Q ss_pred Ccccccccc-cCcce----EEcC-CCCcchHhhHHHHHhcCC-CCC--CCcccccc
Q 036555 147 DWMCCVCME-RNKGA----AFIP-CGHTFCRVCSRDLWLNRG-TCP--ICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~-~~~~~----~~lp-CgH~FC~~Ci~~~~~~~~-~CP--~Cr~~i~~ 193 (198)
+..||||.. ++-+| ..-| |.|.+|-+|+.+.+.... .|| .|.+.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 458999975 44444 2225 999999999999998766 999 89876643
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.74 E-value=0.019 Score=50.05 Aligned_cols=47 Identities=32% Similarity=0.871 Sum_probs=33.9
Q ss_pred CcccccccccCc--ceEEc--CCCCcchHhhHHHHHhc-CCCCCCCcccccc
Q 036555 147 DWMCCVCMERNK--GAAFI--PCGHTFCRVCSRDLWLN-RGTCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~--~~~~l--pCgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~~ 193 (198)
+..|++|++.+. +.-|. |||...|..|......+ .+.||-||..+.+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 335999999765 33444 57777888888766553 3599999998765
No 77
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.50 E-value=0.014 Score=41.96 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=26.0
Q ss_pred CCCCcccccccccCcce--EEcCCCCcchHhhHH
Q 036555 144 EGSDWMCCVCMERNKGA--AFIPCGHTFCRVCSR 175 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~--~~lpCgH~FC~~Ci~ 175 (198)
......|++|...+.+. ++.||||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34566899999988766 567999999999975
No 78
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.26 E-value=0.032 Score=56.71 Aligned_cols=49 Identities=35% Similarity=0.723 Sum_probs=38.5
Q ss_pred CCCcccccccccCc---ceEEcCCCCcchHhhHHHHHhcCC----------CCCCCcccccc
Q 036555 145 GSDWMCCVCMERNK---GAAFIPCGHTFCRVCSRDLWLNRG----------TCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~---~~~~lpCgH~FC~~Ci~~~~~~~~----------~CP~Cr~~i~~ 193 (198)
..+..|-||+..-- ..+.+.|+|.|+..|..+.+.++- .||+|..+|..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45678999986543 238899999999999988877543 99999988754
No 79
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.24 E-value=0.056 Score=52.17 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=36.1
Q ss_pred CCcccccccccCcce--EE--cCCCCcchHhhHHHHHhcCC-------CCCCCccccc
Q 036555 146 SDWMCCVCMERNKGA--AF--IPCGHTFCRVCSRDLWLNRG-------TCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~--~~--lpCgH~FC~~Ci~~~~~~~~-------~CP~Cr~~i~ 192 (198)
..+.|-||++..... +. ..|.|+|+..||.+|-.+.. .||.|.....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 456899999987643 22 35999999999999987532 8999985443
No 80
>PHA03096 p28-like protein; Provisional
Probab=94.12 E-value=0.027 Score=48.37 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=30.1
Q ss_pred cccccccccCcce--------EEcCCCCcchHhhHHHHHhcCC---CCCCCc
Q 036555 148 WMCCVCMERNKGA--------AFIPCGHTFCRVCSRDLWLNRG---TCPICN 188 (198)
Q Consensus 148 ~~C~IC~~~~~~~--------~~lpCgH~FC~~Ci~~~~~~~~---~CP~Cr 188 (198)
-.|.||++..... ++-.|.|.||..|+..|...+. .||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 4799999865432 4456999999999999987544 454444
No 81
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.05 E-value=0.016 Score=49.70 Aligned_cols=46 Identities=20% Similarity=0.566 Sum_probs=35.2
Q ss_pred CcccccccccCcce---EEcCCCCcchHhhHHHHHhc-----------------------CCCCCCCccccc
Q 036555 147 DWMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWLN-----------------------RGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~~-----------------------~~~CP~Cr~~i~ 192 (198)
.-.|.||+--|.+. +.++|.|.|+..|+.+.+.. ...||+||..|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34799999877653 67789999999999776541 118999999875
No 82
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=0.023 Score=54.68 Aligned_cols=46 Identities=20% Similarity=0.516 Sum_probs=36.7
Q ss_pred CcccccccccCcce-EEcCCCCcchHhhHHHHHhcCCCCCCCcccccccc
Q 036555 147 DWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEIL 195 (198)
Q Consensus 147 ~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l 195 (198)
...|..|-..+.-| |...|||.||..|+. .+...||.|+..+..++
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~~m 886 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRGVM 886 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhhhhH
Confidence 35899999988877 677899999999998 34459999988654443
No 83
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.22 Score=44.32 Aligned_cols=53 Identities=23% Similarity=0.488 Sum_probs=40.0
Q ss_pred CCcccccccccCc---ceEEcCCCCcchHhhHHHHHhcCC---CCCCCcccc--ccccccC
Q 036555 146 SDWMCCVCMERNK---GAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSI--IEILDIF 198 (198)
Q Consensus 146 ~~~~C~IC~~~~~---~~~~lpCgH~FC~~Ci~~~~~~~~---~CP~Cr~~i--~~~l~iy 198 (198)
..+.|||=.+.-. .|+.+.|||+.+..-+.++..+.. +||.|.... .+..+||
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~ 393 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLY 393 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhccccc
Confidence 5678998665443 469999999999999999988765 999997654 3344444
No 84
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.81 E-value=0.15 Score=32.24 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=21.0
Q ss_pred cccccccccCcceEEc-CCCCcchHhh--HHHHHhcCC--CCCCCccc
Q 036555 148 WMCCVCMERNKGAAFI-PCGHTFCRVC--SRDLWLNRG--TCPICNRS 190 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~l-pCgH~FC~~C--i~~~~~~~~--~CP~Cr~~ 190 (198)
+.|+|...++..|+.- .|.|.-|..- ......... .||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5799999999988664 5999855432 222222223 89999864
No 85
>PHA02862 5L protein; Provisional
Probab=92.71 E-value=0.12 Score=39.93 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=34.4
Q ss_pred ccccccccCcceEEcCCCCc-----chHhhHHHHHhcCC--CCCCCccccc
Q 036555 149 MCCVCMERNKGAAFIPCGHT-----FCRVCSRDLWLNRG--TCPICNRSII 192 (198)
Q Consensus 149 ~C~IC~~~~~~~~~lpCgH~-----FC~~Ci~~~~~~~~--~CP~Cr~~i~ 192 (198)
.|=||.+.-.+. ..||.-. .|..|+.+|+...+ .|++|+.++.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 699999886554 4687754 79999999997554 9999998874
No 86
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.51 E-value=0.028 Score=53.27 Aligned_cols=47 Identities=26% Similarity=0.689 Sum_probs=39.1
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhc---CCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN---RGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~---~~~CP~Cr~~i~ 192 (198)
-.+.|+||...+..++.+.|.|.||..|+...+.. ...||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 35689999999999999999999999999776653 339999986654
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.00 E-value=0.13 Score=45.52 Aligned_cols=28 Identities=25% Similarity=0.780 Sum_probs=21.9
Q ss_pred CCCcchHhhHHHHHhcCC-------------CCCCCccccc
Q 036555 165 CGHTFCRVCSRDLWLNRG-------------TCPICNRSII 192 (198)
Q Consensus 165 CgH~FC~~Ci~~~~~~~~-------------~CP~Cr~~i~ 192 (198)
|....|..|+-+|+..++ .||.||+.|.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 334469999999987544 9999999873
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.88 E-value=0.061 Score=45.90 Aligned_cols=43 Identities=30% Similarity=0.734 Sum_probs=35.9
Q ss_pred CcccccccccCc----ceEEcCCCCcchHhhHHHHHhcCCCCCCCcc
Q 036555 147 DWMCCVCMERNK----GAAFIPCGHTFCRVCSRDLWLNRGTCPICNR 189 (198)
Q Consensus 147 ~~~C~IC~~~~~----~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~ 189 (198)
...||||.+.+. .+..++|||..+..|........-+||+|-+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 345999987653 4678899999999999998887789999988
No 89
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.65 E-value=0.23 Score=38.95 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=35.2
Q ss_pred CCcccccccccCcceEEcCCCCc-----chHhhHHHHHhcCC--CCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHT-----FCRVCSRDLWLNRG--TCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~-----FC~~Ci~~~~~~~~--~CP~Cr~~i~ 192 (198)
.+..|-||.+.... ...||.-. .|..|+.+|+..++ .|++|+.++.
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45689999987643 34576653 59999999998655 9999998863
No 90
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=0.099 Score=44.67 Aligned_cols=34 Identities=32% Similarity=0.811 Sum_probs=27.7
Q ss_pred cceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccc
Q 036555 158 KGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191 (198)
Q Consensus 158 ~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i 191 (198)
..|..+.|||+||..|+...+.+.. .||.||.+.
T Consensus 20 ~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 20 HIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 3455666999999999998887655 889999883
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.55 E-value=0.28 Score=29.97 Aligned_cols=38 Identities=24% Similarity=0.596 Sum_probs=22.9
Q ss_pred cccccccCcceEEcC---CCCcchHhhHHHHHhcCC--CCCCC
Q 036555 150 CCVCMERNKGAAFIP---CGHTFCRVCSRDLWLNRG--TCPIC 187 (198)
Q Consensus 150 C~IC~~~~~~~~~lp---CgH~FC~~Ci~~~~~~~~--~CP~C 187 (198)
|.+|.+.....+.=+ |+-.++..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777776665544 887899999999998766 79987
No 92
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.13 Score=48.52 Aligned_cols=38 Identities=29% Similarity=0.748 Sum_probs=30.0
Q ss_pred CCcccccccccCc----ceEEcCCCCcchHhhHHHHHhcCCCCC
Q 036555 146 SDWMCCVCMERNK----GAAFIPCGHTFCRVCSRDLWLNRGTCP 185 (198)
Q Consensus 146 ~~~~C~IC~~~~~----~~~~lpCgH~FC~~Ci~~~~~~~~~CP 185 (198)
..+.|.||+..|. .|+++-|||+.|..|+..... .+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 4567999987775 468889999999999987644 4666
No 93
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.59 E-value=0.3 Score=37.32 Aligned_cols=39 Identities=26% Similarity=0.635 Sum_probs=29.1
Q ss_pred CcccccccccCcc---eEEcCCCCc------chHhhHHHHHhcCCCCC
Q 036555 147 DWMCCVCMERNKG---AAFIPCGHT------FCRVCSRDLWLNRGTCP 185 (198)
Q Consensus 147 ~~~C~IC~~~~~~---~~~lpCgH~------FC~~Ci~~~~~~~~~CP 185 (198)
...|.||++...+ .+.++||-+ ||..|+.+|..+...=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDP 73 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDP 73 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCC
Confidence 5689999998766 366778754 99999999955444333
No 94
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=89.09 E-value=0.18 Score=31.38 Aligned_cols=38 Identities=26% Similarity=0.697 Sum_probs=24.5
Q ss_pred cccccccCcc--eEEcCCCCc-----chHhhHHHHHhcC--CCCCCC
Q 036555 150 CCVCMERNKG--AAFIPCGHT-----FCRVCSRDLWLNR--GTCPIC 187 (198)
Q Consensus 150 C~IC~~~~~~--~~~lpCgH~-----FC~~Ci~~~~~~~--~~CP~C 187 (198)
|-||++.... +...||.-. .|..|+.+|+... .+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5688776543 467787643 6999999999854 378877
No 95
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.05 E-value=0.33 Score=42.11 Aligned_cols=54 Identities=7% Similarity=-0.152 Sum_probs=44.4
Q ss_pred ccCCCCcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCcccccccccc
Q 036555 142 LREGSDWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDI 197 (198)
Q Consensus 142 ~~~~~~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~i 197 (198)
...-..+.|.+|-.-....+..+|+|. ||..|.. .....+||.|.......++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence 344566789999998888899999997 9999986 44556999999888877776
No 96
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=0.29 Score=39.17 Aligned_cols=46 Identities=30% Similarity=0.711 Sum_probs=34.3
Q ss_pred CcccccccccCcce-------EEcCCCCcchHhhHHHHHhc----C-------CCCCCCccccc
Q 036555 147 DWMCCVCMERNKGA-------AFIPCGHTFCRVCSRDLWLN----R-------GTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~~-------~~lpCgH~FC~~Ci~~~~~~----~-------~~CP~Cr~~i~ 192 (198)
...|.||+-..-+. -.+.||..|+.-|+..|+.. + +.||.|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34688887654332 33579999999999999873 1 18999998875
No 97
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.32 E-value=0.5 Score=39.74 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN 180 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~ 180 (198)
....|++|+..+.+|+..|=||.||..||.+.+..
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 45578899999999999999999999999987764
No 98
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=0.48 Score=42.45 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=25.9
Q ss_pred EEcCCCCcchHhhHHHHHhcCC--CCCCCccccc
Q 036555 161 AFIPCGHTFCRVCSRDLWLNRG--TCPICNRSII 192 (198)
Q Consensus 161 ~~lpCgH~FC~~Ci~~~~~~~~--~CP~Cr~~i~ 192 (198)
+.+.|||.|-..||++|+.... .||.|...-.
T Consensus 23 vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 23 VSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred eeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 5678999999999999996322 9999976543
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.61 E-value=0.26 Score=49.79 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=40.9
Q ss_pred CCCCcccccccccCc-ceEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNK-GAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~-~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+.....|.||.+... ......|||.+|..|...|...+..||.|.....
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 345568999999888 4566689999999999999999999999975543
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.72 E-value=0.77 Score=39.56 Aligned_cols=28 Identities=29% Similarity=0.996 Sum_probs=22.1
Q ss_pred CCCcchHhhHHHHHhcCC-------------CCCCCccccc
Q 036555 165 CGHTFCRVCSRDLWLNRG-------------TCPICNRSII 192 (198)
Q Consensus 165 CgH~FC~~Ci~~~~~~~~-------------~CP~Cr~~i~ 192 (198)
|....|..|+.+|+..+. +||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 455679999999887543 9999999873
No 101
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=0.88 Score=41.41 Aligned_cols=35 Identities=31% Similarity=0.707 Sum_probs=30.1
Q ss_pred CCcccccccccCcc-eEEcCCCCcchHhhHHHHHhc
Q 036555 146 SDWMCCVCMERNKG-AAFIPCGHTFCRVCSRDLWLN 180 (198)
Q Consensus 146 ~~~~C~IC~~~~~~-~~~lpCgH~FC~~Ci~~~~~~ 180 (198)
....|.||.+.+.. .+.+.|||.||..|+...+..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999999985 778899999999999887764
No 102
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.54 E-value=0.9 Score=44.39 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=27.8
Q ss_pred CCCCcccccccccCcce--EEcCCCCcchHhhHHHHHh
Q 036555 144 EGSDWMCCVCMERNKGA--AFIPCGHTFCRVCSRDLWL 179 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~--~~lpCgH~FC~~Ci~~~~~ 179 (198)
.+....|.+|...+-.. ++.||||.|+..|+.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 45566899998766543 5669999999999977654
No 103
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.98 E-value=2.1 Score=36.22 Aligned_cols=48 Identities=21% Similarity=0.485 Sum_probs=36.5
Q ss_pred CCCCcccccccccCcc----eEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKG----AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~----~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
....+.|+|---.+.. .++.+|||+|-..-+.+.- ...|++|.+.+..
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred ccceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccc
Confidence 3467899986554443 3667999999999888764 4699999999864
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.76 E-value=0.93 Score=40.59 Aligned_cols=33 Identities=27% Similarity=0.780 Sum_probs=24.5
Q ss_pred Cccccccc-ccCcce---EEcCCCCcchHhhHHHHHh
Q 036555 147 DWMCCVCM-ERNKGA---AFIPCGHTFCRVCSRDLWL 179 (198)
Q Consensus 147 ~~~C~IC~-~~~~~~---~~lpCgH~FC~~Ci~~~~~ 179 (198)
...|.||+ +..... ....|+|.||..|+.+.+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 45899999 433321 3456999999999998776
No 105
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.11 E-value=1.3 Score=37.39 Aligned_cols=50 Identities=18% Similarity=0.531 Sum_probs=36.2
Q ss_pred CCcccccccccCcce----EEcCCCCc-----chHhhHHHHHhcCC--------CCCCCcccccccc
Q 036555 146 SDWMCCVCMERNKGA----AFIPCGHT-----FCRVCSRDLWLNRG--------TCPICNRSIIEIL 195 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~----~~lpCgH~-----FC~~Ci~~~~~~~~--------~CP~Cr~~i~~~l 195 (198)
.+..|-||+..-++. -+-||... .|..|+..|+..+. .||.|+..+.-++
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 455789999877664 33476532 89999999987433 8999998865443
No 106
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=77.52 E-value=0.45 Score=40.75 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCcccccccccCcceEEcCC---C--CcchHhhHHHHHhcCCCCCCCcccccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPC---G--HTFCRVCSRDLWLNRGTCPICNRSIIEIL 195 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpC---g--H~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l 195 (198)
....||||-....-.++..= | |.+|..|-..|...+..||.|...-...+
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l 225 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKL 225 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EE
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcce
Confidence 44689999987766555544 3 45899999999998899999987755433
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.55 E-value=2.5 Score=41.27 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=36.3
Q ss_pred Cccccccccc--CcceEEcCCCCc-----chHhhHHHHHhcCC--CCCCCcccc
Q 036555 147 DWMCCVCMER--NKGAAFIPCGHT-----FCRVCSRDLWLNRG--TCPICNRSI 191 (198)
Q Consensus 147 ~~~C~IC~~~--~~~~~~lpCgH~-----FC~~Ci~~~~~~~~--~CP~Cr~~i 191 (198)
+..|-||... ..+|.+.||..+ .|..|+.+|+.-.+ +|-+|..++
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 4589999754 457899998875 79999999998544 999998776
No 108
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=73.05 E-value=8 Score=32.27 Aligned_cols=25 Identities=24% Similarity=0.715 Sum_probs=21.1
Q ss_pred CcchHhhHHHHHhcCCCCCCCcccc
Q 036555 167 HTFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 167 H~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
...|..|-.....+...||+|.+.-
T Consensus 249 MK~ClsChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 249 MKVCLSCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred chHHHHHHHHHhcCCCCCcchhhcc
Confidence 3479999999999999999998654
No 109
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=71.65 E-value=3 Score=36.46 Aligned_cols=45 Identities=29% Similarity=0.791 Sum_probs=28.6
Q ss_pred CcccccccccCc--------------c-----eEEcCCCCcchHhhHHHHHhc----------CCCCCCCccccc
Q 036555 147 DWMCCVCMERNK--------------G-----AAFIPCGHTFCRVCSRDLWLN----------RGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~--------------~-----~~~lpCgH~FC~~Ci~~~~~~----------~~~CP~Cr~~i~ 192 (198)
...|++|+..-. + -.|.||||. |..=...+|.+ +..||+|-..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 568999986422 1 167799995 44444444442 228999987764
No 110
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=70.25 E-value=2.8 Score=36.59 Aligned_cols=45 Identities=29% Similarity=0.791 Sum_probs=36.2
Q ss_pred cccccccccCc--ceEEc--CCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 148 WMCCVCMERNK--GAAFI--PCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 148 ~~C~IC~~~~~--~~~~l--pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
..|+||.+... +..++ ||++..|..|+.........||.||+++.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 58999998763 22344 58888999999999888889999998764
No 111
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=70.16 E-value=3.3 Score=36.11 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=38.3
Q ss_pred CCCcccccccccCc---ceEEcCCCCcchHhhHHHHHhcCC---CCCCCccc--cccccccC
Q 036555 145 GSDWMCCVCMERNK---GAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRS--IIEILDIF 198 (198)
Q Consensus 145 ~~~~~C~IC~~~~~---~~~~lpCgH~FC~~Ci~~~~~~~~---~CP~Cr~~--i~~~l~iy 198 (198)
-.-+.|||=-+.-. .|+.+.|||..-..-+.....+.. .||.|... ...++++|
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvr 395 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVR 395 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhccc
Confidence 34578987655432 469999999999999888877655 99999654 23445443
No 112
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.72 E-value=3.1 Score=40.35 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.9
Q ss_pred EcCCCCcchHhhHHHHHhcCCCCCC
Q 036555 162 FIPCGHTFCRVCSRDLWLNRGTCPI 186 (198)
Q Consensus 162 ~lpCgH~FC~~Ci~~~~~~~~~CP~ 186 (198)
-..|+|..+..|..+|+.....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 3479999999999999999888873
No 113
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=66.99 E-value=2.2 Score=37.16 Aligned_cols=45 Identities=24% Similarity=0.545 Sum_probs=33.6
Q ss_pred CCcccccccccCcceEE-c--CCC--CcchHhhHHHHHhcCCCCCCCccc
Q 036555 146 SDWMCCVCMERNKGAAF-I--PCG--HTFCRVCSRDLWLNRGTCPICNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~-l--pCg--H~FC~~Ci~~~~~~~~~CP~Cr~~ 190 (198)
....||||-....-.+. + .=| |.+|..|-..|...+..||.|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 46789999987654332 1 233 348999999999998999999863
No 114
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.84 E-value=4.4 Score=27.69 Aligned_cols=25 Identities=32% Similarity=0.858 Sum_probs=19.7
Q ss_pred CCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 166 GHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 166 gH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
-|+||..|....+. ..||-|.-.+.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhh
Confidence 37899999987654 79999987664
No 115
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=62.18 E-value=2.1 Score=37.25 Aligned_cols=45 Identities=22% Similarity=0.470 Sum_probs=33.5
Q ss_pred CCcccccccccCcceEEcC----CC--CcchHhhHHHHHhcCCCCCCCccc
Q 036555 146 SDWMCCVCMERNKGAAFIP----CG--HTFCRVCSRDLWLNRGTCPICNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lp----Cg--H~FC~~Ci~~~~~~~~~CP~Cr~~ 190 (198)
....||||-....-.++.. =| |.+|..|-.+|...+..||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3458999998765433222 33 348999999999998999999865
No 116
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.36 E-value=6.3 Score=38.51 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=30.8
Q ss_pred cccccccccCcce-------EEcCCCCcchHhhHHHHHhcC------CCCCCCcccccc
Q 036555 148 WMCCVCMERNKGA-------AFIPCGHTFCRVCSRDLWLNR------GTCPICNRSIIE 193 (198)
Q Consensus 148 ~~C~IC~~~~~~~-------~~lpCgH~FC~~Ci~~~~~~~------~~CP~Cr~~i~~ 193 (198)
..|.+|...+.++ .+-.|+|.||..||..|...- -.|++|..-|..
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3566666555542 223499999999999987531 278888776543
No 117
>PF11494 Ta0938: Ta0938; InterPro: IPR021585 Ta0938 is a protein of unknown function however the structure has been determined. The protein has a novel fold and a putative Zn-binding motif. The structure has two different parts, one region contains a beta sheet flanked by two alpha helices and the other contains a bundle of loops which contain all cysteines in the protein. ; PDB: 2FQH_A.
Probab=58.25 E-value=3.9 Score=29.46 Aligned_cols=14 Identities=50% Similarity=1.296 Sum_probs=4.9
Q ss_pred hccccccc--ccCCCC
Q 036555 18 LRLKGMGC--CGSMWS 31 (198)
Q Consensus 18 l~~~~~~c--c~~~w~ 31 (198)
-|-|-+|| ||.+|+
T Consensus 10 ag~ke~~CalCG~tWg 25 (105)
T PF11494_consen 10 AGTKEMGCALCGATWG 25 (105)
T ss_dssp --SGGGS-SS---S--
T ss_pred cccccccccccCCcHH
Confidence 35677899 999997
No 118
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=57.58 E-value=6.6 Score=26.29 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=9.1
Q ss_pred cchHhhHHHHHhc
Q 036555 168 TFCRVCSRDLWLN 180 (198)
Q Consensus 168 ~FC~~Ci~~~~~~ 180 (198)
.||+.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 119
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=57.40 E-value=8.5 Score=24.94 Aligned_cols=43 Identities=26% Similarity=0.703 Sum_probs=28.2
Q ss_pred ccccccccCcceE--EcCCCC--cchHhhHHHHHhcCCCCCCCcccccc
Q 036555 149 MCCVCMERNKGAA--FIPCGH--TFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 149 ~C~IC~~~~~~~~--~lpCgH--~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.|-.|-..+.... ..=|.+ +||..|....+ ...||-|.-.|..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 4666655543221 222654 59999999887 4789999877643
No 120
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=57.04 E-value=4.2 Score=28.96 Aligned_cols=38 Identities=24% Similarity=0.842 Sum_probs=28.5
Q ss_pred cccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccccc
Q 036555 148 WMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEI 194 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~ 194 (198)
..|-||-..... =||.||..|... .+.|.+|.+.|.+.
T Consensus 45 ~~C~~CK~~v~q-----~g~~YCq~CAYk----kGiCamCGKki~dt 82 (90)
T PF10235_consen 45 SKCKICKTKVHQ-----PGAKYCQTCAYK----KGICAMCGKKILDT 82 (90)
T ss_pred cccccccccccc-----CCCccChhhhcc----cCcccccCCeeccc
Confidence 479999765443 378899999755 37999999998653
No 121
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=57.00 E-value=0.84 Score=30.97 Aligned_cols=41 Identities=24% Similarity=0.618 Sum_probs=21.0
Q ss_pred cccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 148 WMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+.||.|...+.... +|.+|..|.... .....||-|..++..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~-~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDY-KKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EE-EEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC----CEEECccccccc-eecccCCCcccHHHH
Confidence 46888887755322 677788886542 333488888887653
No 122
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.91 E-value=5.9 Score=35.49 Aligned_cols=42 Identities=29% Similarity=0.537 Sum_probs=28.5
Q ss_pred CCCcccccccccCc---c--eEEcCCCCcchHhhHHHHHhcCCCCCC
Q 036555 145 GSDWMCCVCMERNK---G--AAFIPCGHTFCRVCSRDLWLNRGTCPI 186 (198)
Q Consensus 145 ~~~~~C~IC~~~~~---~--~~~lpCgH~FC~~Ci~~~~~~~~~CP~ 186 (198)
.....|+.|..... . -+.-.|||.||+.|...|......|..
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~ 350 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYE 350 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccC
Confidence 34567888875543 2 133349999999999888776665543
No 123
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=56.55 E-value=9 Score=33.63 Aligned_cols=43 Identities=21% Similarity=0.537 Sum_probs=29.8
Q ss_pred CcccccccccCcce---EEcCCCCcchHhhHHHHHhcCCCCCCCcc
Q 036555 147 DWMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWLNRGTCPICNR 189 (198)
Q Consensus 147 ~~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~ 189 (198)
...|-.|.+..... .--.|.+.||..|-.-....-..||.|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 44599996655443 23369999999997555444559999963
No 124
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=55.21 E-value=6.8 Score=24.88 Aligned_cols=25 Identities=28% Similarity=0.707 Sum_probs=13.9
Q ss_pred CCCCcchHhhHHHHHhcCCCCCCCc
Q 036555 164 PCGHTFCRVCSRDLWLNRGTCPICN 188 (198)
Q Consensus 164 pCgH~FC~~Ci~~~~~~~~~CP~Cr 188 (198)
.|++.||..|-.=....-..||.|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 5889999999543333334999984
No 125
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=54.48 E-value=4.7 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.529 Sum_probs=22.1
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHHHhc--CCCCCCCccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN--RGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~--~~~CP~Cr~~i~ 192 (198)
.+.||.|...+.... +...|...-... ...||+|...+.
T Consensus 2 ~f~CP~C~~~~~~~~-------L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-------LVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHHH-------HHHHHHhHCcCCCCCccCCCchhhhh
Confidence 578999988444322 233333333222 238999987654
No 126
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=53.80 E-value=16 Score=25.30 Aligned_cols=47 Identities=23% Similarity=0.638 Sum_probs=18.4
Q ss_pred CcccccccccCc----ceEEcC---CCCcchHhhHHHHHh-cCCCCCCCcccccc
Q 036555 147 DWMCCVCMERNK----GAAFIP---CGHTFCRVCSRDLWL-NRGTCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~----~~~~lp---CgH~FC~~Ci~~~~~-~~~~CP~Cr~~i~~ 193 (198)
.-.|.||-+..- ..+|+. |+-..|+.|..--.+ ..+.||.|+..+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 347999987653 225555 455579999864444 34499999987753
No 127
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.79 E-value=3.9 Score=35.42 Aligned_cols=48 Identities=27% Similarity=0.653 Sum_probs=39.5
Q ss_pred CCcccccccccCcceEEcC-CCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
....|-||...+.-+.... |+|.||+.|...|......||.|+..+..
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 4557999999888776655 99999999999999888899988876544
No 128
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=53.25 E-value=1.6 Score=22.99 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=4.1
Q ss_pred CCCCCCccc
Q 036555 182 GTCPICNRS 190 (198)
Q Consensus 182 ~~CP~Cr~~ 190 (198)
.-||.|.++
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 345555443
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.36 E-value=15 Score=35.75 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=31.0
Q ss_pred cccccccccCcceEEc--CCCCcchHhhHHHHHhcCCCCCC
Q 036555 148 WMCCVCMERNKGAAFI--PCGHTFCRVCSRDLWLNRGTCPI 186 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~l--pCgH~FC~~Ci~~~~~~~~~CP~ 186 (198)
..|.+|-.......+- -|+|..|..|+..|+.....||.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 3688887777766444 39999999999999998887766
No 130
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=51.82 E-value=5.5 Score=34.81 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=39.8
Q ss_pred cCCCCcccccccccCcceEEcCCCCc-chHhhHHHH-HhcCCCCCCCccccccccc
Q 036555 143 REGSDWMCCVCMERNKGAAFIPCGHT-FCRVCSRDL-WLNRGTCPICNRSIIEILD 196 (198)
Q Consensus 143 ~~~~~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~-~~~~~~CP~Cr~~i~~~l~ 196 (198)
.......|.+|++.-......+|+|. ||..|..+. ++....|++|-..+....+
T Consensus 132 ~~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~ 187 (394)
T KOG2113|consen 132 PKGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQ 187 (394)
T ss_pred cccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhc
Confidence 34567789999988888888899996 999997665 3444469999776655443
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.71 E-value=4.9 Score=36.10 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=0.0
Q ss_pred EEcCCCCcchHhhHHHHHh------cCCCCCCCccccc
Q 036555 161 AFIPCGHTFCRVCSRDLWL------NRGTCPICNRSII 192 (198)
Q Consensus 161 ~~lpCgH~FC~~Ci~~~~~------~~~~CP~Cr~~i~ 192 (198)
+.+.|||++-+. .|.. ....||+|+..-.
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccCC
Confidence 778999987664 3432 1349999987643
No 132
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=50.99 E-value=5.6 Score=25.13 Aligned_cols=11 Identities=45% Similarity=1.241 Sum_probs=5.9
Q ss_pred CCCCCcccccc
Q 036555 183 TCPICNRSIIE 193 (198)
Q Consensus 183 ~CP~Cr~~i~~ 193 (198)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999988864
No 133
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=50.96 E-value=5.1 Score=35.98 Aligned_cols=47 Identities=23% Similarity=0.544 Sum_probs=0.0
Q ss_pred CcccccccccCc--------------c-----eEEcCCCCcchHhhHHHHHh---------cCCCCCCCcccccc
Q 036555 147 DWMCCVCMERNK--------------G-----AAFIPCGHTFCRVCSRDLWL---------NRGTCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~--------------~-----~~~lpCgH~FC~~Ci~~~~~---------~~~~CP~Cr~~i~~ 193 (198)
...|++|...-. + -+|.||||..-.+...-|.. .+..||+|-.+|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999986321 1 17789999754444443432 12389999988863
No 134
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=1.7 Score=38.81 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=37.9
Q ss_pred ccccccccCcce----EEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 149 MCCVCMERNKGA----AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 149 ~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.|.||...++.- ..+-|||.++..|+.+|+.....||.|+..+..
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 689998877643 456799999999999999998899999988754
No 135
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=47.07 E-value=6.7 Score=27.80 Aligned_cols=18 Identities=39% Similarity=0.995 Sum_probs=16.1
Q ss_pred HhcccccccccCCCCcCC
Q 036555 17 RLRLKGMGCCGSMWSFRT 34 (198)
Q Consensus 17 ~l~~~~~~cc~~~w~~~~ 34 (198)
|+++++.||+|-.+.+..
T Consensus 29 Ri~v~~gGCsG~~Y~~~l 46 (92)
T TIGR01911 29 RIHFAGMGCMGPMFNLIA 46 (92)
T ss_pred EEEEeCCCccCcccceEe
Confidence 678899999999999886
No 136
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=46.96 E-value=13 Score=31.02 Aligned_cols=24 Identities=25% Similarity=0.782 Sum_probs=20.8
Q ss_pred cchHhhHHHHHhcCCCCCCCcccc
Q 036555 168 TFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 168 ~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
.-|..|-.....+...||+|.+.-
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred chhHhHHHHHhcCCCCCccccccc
Confidence 379999999999999999997653
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.12 E-value=18 Score=26.80 Aligned_cols=40 Identities=23% Similarity=0.494 Sum_probs=29.8
Q ss_pred ccccccccCcceE--------------EcCCCCcchHhhHHHHHhcCCCCCCCc
Q 036555 149 MCCVCMERNKGAA--------------FIPCGHTFCRVCSRDLWLNRGTCPICN 188 (198)
Q Consensus 149 ~C~IC~~~~~~~~--------------~lpCgH~FC~~Ci~~~~~~~~~CP~Cr 188 (198)
.|--|+..|..+. -..|.+.||..|-.-+...-..||.|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 5889988776431 246999999999766655556999995
No 138
>PF14353 CpXC: CpXC protein
Probab=45.96 E-value=19 Score=26.75 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=24.6
Q ss_pred cccccccccCcceEEcCCCCcchHhhHHHHHhc---CCCCCCCccccc
Q 036555 148 WMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN---RGTCPICNRSII 192 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~---~~~CP~Cr~~i~ 192 (198)
..||.|...+.-.+...-.-..-..=..+.+.. ..+||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 468888887765544322222223333333322 229999988763
No 139
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=44.15 E-value=4.8 Score=21.83 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=5.0
Q ss_pred cCCCCCCCccc
Q 036555 180 NRGTCPICNRS 190 (198)
Q Consensus 180 ~~~~CP~Cr~~ 190 (198)
....||.|...
T Consensus 13 ~~~~Cp~CG~~ 23 (26)
T PF10571_consen 13 SAKFCPHCGYD 23 (26)
T ss_pred hcCcCCCCCCC
Confidence 33445555443
No 140
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.87 E-value=20 Score=23.06 Aligned_cols=39 Identities=28% Similarity=0.636 Sum_probs=27.4
Q ss_pred cccccccccCc--ce-EEc-CCCCcchHhhHHHHHhcCCCCCC--Cccc
Q 036555 148 WMCCVCMERNK--GA-AFI-PCGHTFCRVCSRDLWLNRGTCPI--CNRS 190 (198)
Q Consensus 148 ~~C~IC~~~~~--~~-~~l-pCgH~FC~~Ci~~~~~~~~~CP~--Cr~~ 190 (198)
..|++|-+.+. +. ++= -||-.+++.|.... ..|-. |...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~----g~C~~~~c~~~ 50 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA----GGCINYSCGTG 50 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhC----CceEeccCCCC
Confidence 47999999994 33 333 49999999998664 56655 5443
No 141
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.68 E-value=4.4 Score=34.51 Aligned_cols=43 Identities=30% Similarity=0.776 Sum_probs=34.1
Q ss_pred cccccccccCcc------eEEcC--------CCCcchHhhHHHHHhcCC-CCCCCccc
Q 036555 148 WMCCVCMERNKG------AAFIP--------CGHTFCRVCSRDLWLNRG-TCPICNRS 190 (198)
Q Consensus 148 ~~C~IC~~~~~~------~~~lp--------CgH~FC~~Ci~~~~~~~~-~CP~Cr~~ 190 (198)
..|.||...+.. |.++. |||+.|..|+...+.... .||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 469999877762 34555 999999999999887665 99999864
No 142
>PF15147 DUF4578: Domain of unknown function (DUF4578)
Probab=41.87 E-value=11 Score=27.92 Aligned_cols=11 Identities=45% Similarity=1.356 Sum_probs=9.8
Q ss_pred cccCCCCcCCc
Q 036555 25 CCGSMWSFRTQ 35 (198)
Q Consensus 25 cc~~~w~~~~~ 35 (198)
|||-+|+..++
T Consensus 6 CCggSWScPst 16 (127)
T PF15147_consen 6 CCGGSWSCPST 16 (127)
T ss_pred ccCCCcCCchh
Confidence 99999998776
No 143
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.01 E-value=18 Score=26.41 Aligned_cols=24 Identities=29% Similarity=0.767 Sum_probs=17.3
Q ss_pred CCcchHhhHHHHHhcC--------C-CCCCCcc
Q 036555 166 GHTFCRVCSRDLWLNR--------G-TCPICNR 189 (198)
Q Consensus 166 gH~FC~~Ci~~~~~~~--------~-~CP~Cr~ 189 (198)
.-.||..|+...+... . .||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 5559999987766532 1 8999975
No 144
>PF08853 DUF1823: Domain of unknown function (DUF1823); InterPro: IPR014952 These proteins are functionally uncharacterised. ; PDB: 2L1N_A.
Probab=40.19 E-value=11 Score=27.97 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=7.0
Q ss_pred HHHHHHHhccccc
Q 036555 11 WQNLKQRLRLKGM 23 (198)
Q Consensus 11 ~~~~~~~l~~~~~ 23 (198)
.+.||+.|||||-
T Consensus 78 KQlLKe~LgFkGY 90 (116)
T PF08853_consen 78 KQLLKEQLGFKGY 90 (116)
T ss_dssp TTHHHHTT-----
T ss_pred HHHHHHhcCCCce
Confidence 5789999999996
No 145
>PLN02189 cellulose synthase
Probab=38.91 E-value=23 Score=35.74 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=31.8
Q ss_pred CcccccccccCc----ceEEcC---CCCcchHhhHHHHHh-cCCCCCCCccccc
Q 036555 147 DWMCCVCMERNK----GAAFIP---CGHTFCRVCSRDLWL-NRGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~----~~~~lp---CgH~FC~~Ci~~~~~-~~~~CP~Cr~~i~ 192 (198)
...|.||-+..- .-.++. |+-..|..|.+--.+ ..+.||.|+..+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 348999998753 225555 555589999954433 3349999998876
No 146
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.79 E-value=9.3 Score=29.35 Aligned_cols=44 Identities=30% Similarity=0.769 Sum_probs=24.6
Q ss_pred CCCCcccccccccCcceEEcCCCCc-------chHhhHHHHHhcCC----CCCCCccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHT-------FCRVCSRDLWLNRG----TCPICNRS 190 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~-------FC~~Ci~~~~~~~~----~CP~Cr~~ 190 (198)
...+..|-||..... .--|||. ||..|--+.....+ .|-+|++.
T Consensus 62 v~ddatC~IC~KTKF---ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKF---ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhccc---ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 456778999985432 2247774 45555433322211 67777654
No 147
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.79 E-value=18 Score=24.18 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=10.1
Q ss_pred hhhHHHHHHHhc
Q 036555 8 RRVWQNLKQRLR 19 (198)
Q Consensus 8 ~~~~~~~~~~l~ 19 (198)
..+|..||+||.
T Consensus 54 ~~rW~lLK~RL~ 65 (69)
T cd04894 54 KVRWDLLKNRLM 65 (69)
T ss_pred cccHHHHHHHHH
Confidence 467999999995
No 148
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.42 E-value=18 Score=27.59 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=17.5
Q ss_pred cccccCcceEEcCCCCcchHh
Q 036555 152 VCMERNKGAAFIPCGHTFCRV 172 (198)
Q Consensus 152 IC~~~~~~~~~lpCgH~FC~~ 172 (198)
||.......+.-.|||.||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 788888877788899999864
No 149
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=36.93 E-value=6.3 Score=23.69 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=15.1
Q ss_pred CCCCcchHhhHHHHHhcCCCCCCCcc-ccccc
Q 036555 164 PCGHTFCRVCSRDLWLNRGTCPICNR-SIIEI 194 (198)
Q Consensus 164 pCgH~FC~~Ci~~~~~~~~~CP~Cr~-~i~~~ 194 (198)
.|||.|-...-..- .....||.|+. .+..+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~ 40 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRV 40 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEe
Confidence 46666543321111 12348999988 44443
No 150
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=36.05 E-value=23 Score=29.30 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=36.0
Q ss_pred CCCCcccccccccCcceEE-cCCCCcchHhhHHHHHhcCCCCCCCccc
Q 036555 144 EGSDWMCCVCMERNKGAAF-IPCGHTFCRVCSRDLWLNRGTCPICNRS 190 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~-lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~ 190 (198)
..+-..|.+|.......+. =.|+-.++..|+...+.....||.|+--
T Consensus 178 ~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 178 ADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcc
Confidence 3455689999988876543 2355568999999999998899999543
No 151
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.11 E-value=20 Score=35.24 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=26.1
Q ss_pred CCcccccccccCcce--EEcCCCCcchHhhHHHHH
Q 036555 146 SDWMCCVCMERNKGA--AFIPCGHTFCRVCSRDLW 178 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~--~~lpCgH~FC~~Ci~~~~ 178 (198)
....|-.|..-..+. +-..|++.+|..|+..|.
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 445799998877764 445699999999999984
No 152
>PLN02436 cellulose synthase A
Probab=34.18 E-value=27 Score=35.42 Aligned_cols=46 Identities=22% Similarity=0.569 Sum_probs=31.5
Q ss_pred CcccccccccCcc----eEEcC---CCCcchHhhHHHHHh-cCCCCCCCccccc
Q 036555 147 DWMCCVCMERNKG----AAFIP---CGHTFCRVCSRDLWL-NRGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~----~~~lp---CgH~FC~~Ci~~~~~-~~~~CP~Cr~~i~ 192 (198)
...|.||-+..-. -.|+. |+-..|..|.+--.+ ..+.||.|+..+.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999987532 25555 555589999954433 3349999998876
No 153
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=33.83 E-value=21 Score=31.34 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=18.9
Q ss_pred CCcccchhhhHHHHHHHhcc
Q 036555 1 MNGIERRRRVWQNLKQRLRL 20 (198)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~ 20 (198)
|||.+++|--|+.+|++|=|
T Consensus 24 mdGDEmTRiIW~~Ik~KLIl 43 (422)
T KOG1526|consen 24 MDGDEMTRIIWKLIKEKLIL 43 (422)
T ss_pred ecccHHHHHHHHHHHhhccc
Confidence 89999999889999999987
No 154
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.63 E-value=23 Score=26.94 Aligned_cols=23 Identities=39% Similarity=0.911 Sum_probs=17.2
Q ss_pred cchHhhHHHHHhcCCCCCCCcccccc
Q 036555 168 TFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 168 ~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.||.+|-..-+ ..||+|.++|..
T Consensus 29 afcskcgeati---~qcp~csasirg 51 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIRG 51 (160)
T ss_pred HHHhhhchHHH---hcCCccCCcccc
Confidence 39999976543 269999999853
No 155
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.54 E-value=5.8 Score=21.28 Aligned_cols=7 Identities=43% Similarity=1.208 Sum_probs=3.3
Q ss_pred CCCCCcc
Q 036555 183 TCPICNR 189 (198)
Q Consensus 183 ~CP~Cr~ 189 (198)
-||.|.+
T Consensus 18 fC~~CG~ 24 (26)
T PF13248_consen 18 FCPNCGA 24 (26)
T ss_pred cChhhCC
Confidence 4454443
No 156
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.51 E-value=25 Score=25.17 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=11.2
Q ss_pred cchHhhHHHHHhc
Q 036555 168 TFCRVCSRDLWLN 180 (198)
Q Consensus 168 ~FC~~Ci~~~~~~ 180 (198)
.||+.|+..|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 157
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=33.50 E-value=58 Score=27.48 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=34.4
Q ss_pred CCcccccccccCcc----eEEcCCCCc-----chHhhHHHHHh--cCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKG----AAFIPCGHT-----FCRVCSRDLWL--NRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~----~~~lpCgH~-----FC~~Ci~~~~~--~~~~CP~Cr~~i~ 192 (198)
....|-||...... +...||.-. .|..|+..|+. +...|.+|...+.
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 35689999985543 456777643 69999999998 4449999977543
No 158
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.38 E-value=22 Score=20.05 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=9.5
Q ss_pred CCCCCCcccccccc
Q 036555 182 GTCPICNRSIIEIL 195 (198)
Q Consensus 182 ~~CP~Cr~~i~~~l 195 (198)
..||+|..+-..+.
T Consensus 18 ~~CP~Cg~~~~~F~ 31 (33)
T cd00350 18 WVCPVCGAPKDKFE 31 (33)
T ss_pred CcCcCCCCcHHHcE
Confidence 48999987655443
No 159
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=31.84 E-value=13 Score=35.15 Aligned_cols=22 Identities=32% Similarity=0.782 Sum_probs=16.7
Q ss_pred CCCCcchHhhHHHHHhcCCCCCCCc
Q 036555 164 PCGHTFCRVCSRDLWLNRGTCPICN 188 (198)
Q Consensus 164 pCgH~FC~~Ci~~~~~~~~~CP~Cr 188 (198)
-|++.||..|+... ...||.|-
T Consensus 536 ~C~avfH~~C~~r~---s~~CPrC~ 557 (580)
T KOG1829|consen 536 TCLAVFHKKCLRRK---SPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHhcc---CCCCCchH
Confidence 59999999997653 23599993
No 160
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=30.69 E-value=4.8 Score=22.65 Aligned_cols=23 Identities=35% Similarity=0.866 Sum_probs=9.6
Q ss_pred CcchHhhHHHHHhcCC----CCCCCcc
Q 036555 167 HTFCRVCSRDLWLNRG----TCPICNR 189 (198)
Q Consensus 167 H~FC~~Ci~~~~~~~~----~CP~Cr~ 189 (198)
|.||..|-........ .||.|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 5566666544433222 6666654
No 161
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=29.87 E-value=45 Score=18.36 Aligned_cols=34 Identities=21% Similarity=0.603 Sum_probs=17.3
Q ss_pred cccccccCcc--eEEcCCCCcchHhhHHHHHhcCCCCCCCcccc
Q 036555 150 CCVCMERNKG--AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 150 C~IC~~~~~~--~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
|..|...+.. .++..=+..|+..| ..|..|+.+|
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 5666665554 22222334455555 3566666654
No 162
>PLN02248 cellulose synthase-like protein
Probab=29.77 E-value=36 Score=34.71 Aligned_cols=31 Identities=35% Similarity=0.877 Sum_probs=26.0
Q ss_pred EcC--CCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 162 FIP--CGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 162 ~lp--CgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
.+| |++..|+.|....++....||.|+.++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 145 LLPCECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred CCcccccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 445 6677899999999999889999988873
No 163
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=29.71 E-value=38 Score=32.44 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=30.3
Q ss_pred cCCCCcccccccccCcce-EEcCCCCcchHhhHHHHHhcCC----CCCCCccccc
Q 036555 143 REGSDWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLWLNRG----TCPICNRSII 192 (198)
Q Consensus 143 ~~~~~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr~~i~ 192 (198)
...-.+.|+|+..+..-| .-..|.|.-|..-..-.-.+.. .||+|.+.+.
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 344567899987776654 3345777655554322222222 9999988753
No 164
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.27 E-value=9 Score=24.33 Aligned_cols=14 Identities=36% Similarity=0.961 Sum_probs=12.1
Q ss_pred CCCCcchHhhHHHH
Q 036555 164 PCGHTFCRVCSRDL 177 (198)
Q Consensus 164 pCgH~FC~~Ci~~~ 177 (198)
.|+|.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 58999999998776
No 165
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.70 E-value=34 Score=26.81 Aligned_cols=24 Identities=29% Similarity=0.773 Sum_probs=18.9
Q ss_pred CcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 167 HTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 167 H~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+.||..|-.+.+. .||.|..+|..
T Consensus 28 ~~fC~kCG~~tI~---~Cp~C~~~IrG 51 (158)
T PF10083_consen 28 EKFCSKCGAKTIT---SCPNCSTPIRG 51 (158)
T ss_pred HHHHHHhhHHHHH---HCcCCCCCCCC
Confidence 4599999877643 69999999854
No 166
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=27.60 E-value=19 Score=23.56 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=15.5
Q ss_pred CcccccccccCcce----EEcCCCCcchHhhHHHH
Q 036555 147 DWMCCVCMERNKGA----AFIPCGHTFCRVCSRDL 177 (198)
Q Consensus 147 ~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~ 177 (198)
...|.+|...|.-- .-..||+.||..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 34799999988421 22369999999998543
No 167
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.14 E-value=39 Score=20.95 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=21.3
Q ss_pred ccccccccCcce----EEcCCCCcchHhhHHHHHh
Q 036555 149 MCCVCMERNKGA----AFIPCGHTFCRVCSRDLWL 179 (198)
Q Consensus 149 ~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~~~ 179 (198)
.|.+|...|..- .-..||+.||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 588887665532 2236999999999865543
No 168
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=26.19 E-value=34 Score=25.16 Aligned_cols=43 Identities=21% Similarity=0.618 Sum_probs=26.1
Q ss_pred CCcccccccccCc-----ceEEcCCCCcchHhhHHHHHhcCC--CCCCCcc
Q 036555 146 SDWMCCVCMERNK-----GAAFIPCGHTFCRVCSRDLWLNRG--TCPICNR 189 (198)
Q Consensus 146 ~~~~C~IC~~~~~-----~~~~lpCgH~FC~~Ci~~~~~~~~--~CP~Cr~ 189 (198)
+...|.+|...|. ..+-..|.|.+|..|-.. ..+.. .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 4558999987653 235567999999999644 11112 6777754
No 169
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=25.97 E-value=16 Score=31.35 Aligned_cols=26 Identities=31% Similarity=0.887 Sum_probs=12.9
Q ss_pred CCcchHhhHHHHHhcCC----CCCCCcccc
Q 036555 166 GHTFCRVCSRDLWLNRG----TCPICNRSI 191 (198)
Q Consensus 166 gH~FC~~Ci~~~~~~~~----~CP~Cr~~i 191 (198)
.|.||..|-.+...... .||.|+..+
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCcc
Confidence 34455555544433222 666666543
No 170
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=25.67 E-value=49 Score=25.69 Aligned_cols=25 Identities=28% Similarity=0.713 Sum_probs=19.8
Q ss_pred ccchhhhHHHHHHHhccccc--cc----ccC
Q 036555 4 IERRRRVWQNLKQRLRLKGM--GC----CGS 28 (198)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~--~c----c~~ 28 (198)
++.+.++-..|+++|+++|. || ||+
T Consensus 15 ~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGA 45 (148)
T TIGR03193 15 VADNMLLVDYLRDTVGLTGTKQGCDGGECGA 45 (148)
T ss_pred cCCCCcHHHHHHHhcCCCCCCCCCCCCCCCC
Confidence 44556677899999999987 77 777
No 171
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=25.57 E-value=36 Score=30.67 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=19.5
Q ss_pred CCcccchhhhHHHHHHHhcccc
Q 036555 1 MNGIERRRRVWQNLKQRLRLKG 22 (198)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~ 22 (198)
|||.+++|-.|+-+|++|-|--
T Consensus 4 ~~gdemtr~~~~~i~~~li~p~ 25 (393)
T PLN00096 4 VAGEEMTRYTMDLILAKWIEPH 25 (393)
T ss_pred ecchHHHHHHHHHHHHhhccce
Confidence 7999999999999999987743
No 172
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=24 Score=27.98 Aligned_cols=25 Identities=24% Similarity=0.600 Sum_probs=17.0
Q ss_pred CCcccccccccCcce---EEcCCCCcch
Q 036555 146 SDWMCCVCMERNKGA---AFIPCGHTFC 170 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~---~~lpCgH~FC 170 (198)
..-+|.||++.+... ..|||-..|+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEee
Confidence 345799999887643 6678865544
No 173
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=22.71 E-value=1e+02 Score=28.01 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=24.1
Q ss_pred CCcccccccccCcce--EEcCCCCcchHhhHHHH
Q 036555 146 SDWMCCVCMERNKGA--AFIPCGHTFCRVCSRDL 177 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~--~~lpCgH~FC~~Ci~~~ 177 (198)
....|+||+-.+... ...-|.-..|..|..++
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecc
Confidence 346899999887764 33458888999998765
No 176
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=22.38 E-value=61 Score=25.43 Aligned_cols=25 Identities=36% Similarity=0.889 Sum_probs=19.8
Q ss_pred ccchhhhHHHHHHHhccccc--cc----ccC
Q 036555 4 IERRRRVWQNLKQRLRLKGM--GC----CGS 28 (198)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~--~c----c~~ 28 (198)
++++..+=..|++.|+|.|. || ||+
T Consensus 17 ~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGA 47 (156)
T COG2080 17 VDPRTPLLDVLRDELGLTGTKKGCGHGQCGA 47 (156)
T ss_pred eCCCChHHHHHHHhcCCCCcCCCCCCccCCc
Confidence 45666677899999999998 88 665
No 177
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.91 E-value=44 Score=17.89 Aligned_cols=9 Identities=44% Similarity=1.427 Sum_probs=5.6
Q ss_pred CCCCCcccc
Q 036555 183 TCPICNRSI 191 (198)
Q Consensus 183 ~CP~Cr~~i 191 (198)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 467776655
No 178
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.72 E-value=41 Score=33.00 Aligned_cols=40 Identities=28% Similarity=0.574 Sum_probs=27.6
Q ss_pred CcccccccccCc-------ceEEcCCCCcchHhhHHHHHhcCCCCCCC
Q 036555 147 DWMCCVCMERNK-------GAAFIPCGHTFCRVCSRDLWLNRGTCPIC 187 (198)
Q Consensus 147 ~~~C~IC~~~~~-------~~~~lpCgH~FC~~Ci~~~~~~~~~CP~C 187 (198)
+..|..|.+... ..+...|||.|+..|+..-..... |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 348999987654 336678999999999965544333 5444
No 179
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=20.72 E-value=45 Score=27.01 Aligned_cols=38 Identities=24% Similarity=0.687 Sum_probs=24.5
Q ss_pred CCccccccccc-----Ccc-eE--EcCCCCcchHhhHHHHHhcCCCCCCCc
Q 036555 146 SDWMCCVCMER-----NKG-AA--FIPCGHTFCRVCSRDLWLNRGTCPICN 188 (198)
Q Consensus 146 ~~~~C~IC~~~-----~~~-~~--~lpCgH~FC~~Ci~~~~~~~~~CP~Cr 188 (198)
..+.|-+|... |.. .+ --.|+..||..|..+ ..||.|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 34678888753 111 11 125888899999863 6799994
No 180
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=58 Score=31.66 Aligned_cols=48 Identities=23% Similarity=0.559 Sum_probs=30.8
Q ss_pred CCCCcccccccccCcce----------EEcCCCCcc--------------------hHhhHHHHHh--------cCCCCC
Q 036555 144 EGSDWMCCVCMERNKGA----------AFIPCGHTF--------------------CRVCSRDLWL--------NRGTCP 185 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~----------~~lpCgH~F--------------------C~~Ci~~~~~--------~~~~CP 185 (198)
+.+--.|.-|++.+.+| .-+.||..| |..|..+... +...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 34556899998877665 223466666 8888876533 112899
Q ss_pred CCcccc
Q 036555 186 ICNRSI 191 (198)
Q Consensus 186 ~Cr~~i 191 (198)
.|.-.+
T Consensus 178 ~CGP~~ 183 (750)
T COG0068 178 KCGPHL 183 (750)
T ss_pred ccCCCe
Confidence 996543
No 181
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.30 E-value=82 Score=32.13 Aligned_cols=46 Identities=22% Similarity=0.592 Sum_probs=30.9
Q ss_pred CcccccccccCcc----eEEcC---CCCcchHhhHHHHH-hcCCCCCCCccccc
Q 036555 147 DWMCCVCMERNKG----AAFIP---CGHTFCRVCSRDLW-LNRGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~----~~~lp---CgH~FC~~Ci~~~~-~~~~~CP~Cr~~i~ 192 (198)
.-.|.||-+..-- -.|+. |+-..|+.|.+==. ...+.||.|+..+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3489999887532 24444 55558999994332 23449999998875
No 182
>PF14369 zf-RING_3: zinc-finger
Probab=20.06 E-value=17 Score=21.01 Aligned_cols=26 Identities=27% Similarity=0.860 Sum_probs=14.1
Q ss_pred cchHhhHHHHHh----cCC-CCCCCcccccc
Q 036555 168 TFCRVCSRDLWL----NRG-TCPICNRSIIE 193 (198)
Q Consensus 168 ~FC~~Ci~~~~~----~~~-~CP~Cr~~i~~ 193 (198)
.+|+.|-..+.. ... .||.|..-|.+
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~gFvE 33 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHGGFVE 33 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCCcEeE
Confidence 356666543332 112 48888766654
Done!