Query 036555
Match_columns 198
No_of_seqs 197 out of 1555
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.4 4.3E-14 1.5E-18 94.7 3.5 55 144-198 7-70 (71)
2 2xeu_A Ring finger protein 4; 99.4 8E-14 2.7E-18 91.4 3.2 53 146-198 2-63 (64)
3 2csy_A Zinc finger protein 183 99.4 2.4E-13 8.3E-18 93.7 4.8 49 145-193 13-61 (81)
4 2djb_A Polycomb group ring fin 99.4 2.4E-13 8.2E-18 91.8 4.5 51 144-194 12-63 (72)
5 2ecy_A TNF receptor-associated 99.4 1.9E-13 6.6E-18 90.6 3.7 54 144-198 12-66 (66)
6 2vje_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 91.8 2.1 53 146-198 7-62 (64)
7 2d8t_A Dactylidin, ring finger 99.4 1.7E-13 5.9E-18 92.2 3.0 49 145-193 13-61 (71)
8 4ayc_A E3 ubiquitin-protein li 99.4 2E-13 6.7E-18 103.6 3.3 48 146-193 52-99 (138)
9 2ysl_A Tripartite motif-contai 99.4 5.2E-13 1.8E-17 89.9 4.5 50 144-193 17-69 (73)
10 1chc_A Equine herpes virus-1 r 99.4 4E-13 1.4E-17 89.4 3.8 52 146-197 4-56 (68)
11 2ea6_A Ring finger protein 4; 99.4 3.3E-13 1.1E-17 89.6 3.4 50 144-193 12-68 (69)
12 2vje_B MDM4 protein; proto-onc 99.4 1.8E-13 6E-18 90.5 2.0 52 147-198 7-61 (63)
13 1t1h_A Gspef-atpub14, armadill 99.4 4.6E-13 1.6E-17 91.5 4.1 49 144-192 5-54 (78)
14 2yur_A Retinoblastoma-binding 99.3 5.4E-13 1.8E-17 90.6 3.9 49 144-192 12-63 (74)
15 3ztg_A E3 ubiquitin-protein li 99.3 7.8E-13 2.7E-17 93.1 4.3 48 144-191 10-60 (92)
16 2ecn_A Ring finger protein 141 99.3 2.5E-13 8.7E-18 90.9 1.3 53 145-198 13-65 (70)
17 2ecw_A Tripartite motif-contai 99.3 1.7E-12 5.7E-17 89.5 5.5 49 144-192 16-70 (85)
18 4ic3_A E3 ubiquitin-protein li 99.3 3.9E-13 1.3E-17 91.5 2.1 48 147-198 24-72 (74)
19 2kiz_A E3 ubiquitin-protein li 99.3 1.6E-12 5.4E-17 86.7 4.8 51 146-196 13-66 (69)
20 2ysj_A Tripartite motif-contai 99.3 1.9E-12 6.5E-17 84.9 5.0 44 144-187 17-63 (63)
21 2ecm_A Ring finger and CHY zin 99.3 1.3E-12 4.6E-17 83.1 4.1 47 146-192 4-54 (55)
22 1iym_A EL5; ring-H2 finger, ub 99.3 1E-12 3.5E-17 83.8 3.4 47 145-191 3-53 (55)
23 3lrq_A E3 ubiquitin-protein li 99.3 1.3E-12 4.4E-17 93.9 4.1 47 146-192 21-69 (100)
24 2ct2_A Tripartite motif protei 99.3 1.9E-12 6.6E-17 90.0 4.7 49 144-192 12-67 (88)
25 2ecv_A Tripartite motif-contai 99.3 1.9E-12 6.4E-17 89.2 4.3 49 144-192 16-70 (85)
26 2kr4_A Ubiquitin conjugation f 99.3 2.7E-12 9.2E-17 89.7 5.1 50 144-193 11-60 (85)
27 2ep4_A Ring finger protein 24; 99.3 1.3E-12 4.5E-17 88.3 3.2 52 145-196 13-67 (74)
28 3fl2_A E3 ubiquitin-protein li 99.3 1.8E-12 6.1E-17 96.3 4.2 48 146-193 51-99 (124)
29 2egp_A Tripartite motif-contai 99.3 4.4E-13 1.5E-17 91.6 0.7 49 144-192 9-64 (79)
30 2ecg_A Baculoviral IAP repeat- 99.3 3.4E-12 1.2E-16 86.9 4.9 47 148-198 26-73 (75)
31 2l0b_A E3 ubiquitin-protein li 99.3 1.8E-12 6.3E-17 91.5 3.7 48 146-193 39-89 (91)
32 2kre_A Ubiquitin conjugation f 99.3 3.1E-12 1.1E-16 92.1 4.8 50 144-193 26-75 (100)
33 2ckl_A Polycomb group ring fin 99.3 2.7E-12 9.1E-17 93.2 3.8 49 145-193 13-62 (108)
34 2ect_A Ring finger protein 126 99.3 2.2E-12 7.6E-17 88.0 3.2 49 145-193 13-64 (78)
35 2y43_A E3 ubiquitin-protein li 99.2 4E-12 1.4E-16 90.8 4.3 48 146-193 21-69 (99)
36 2ea5_A Cell growth regulator w 99.2 2.5E-12 8.4E-17 86.3 2.9 49 146-198 14-63 (68)
37 1x4j_A Ring finger protein 38; 99.2 2.3E-12 7.8E-17 87.5 2.8 48 146-193 22-72 (75)
38 1wgm_A Ubiquitin conjugation f 99.2 7.1E-12 2.4E-16 89.9 5.2 50 144-193 19-69 (98)
39 3hct_A TNF receptor-associated 99.2 5.1E-12 1.7E-16 93.2 3.7 51 143-193 14-65 (118)
40 2ecj_A Tripartite motif-contai 99.2 6.1E-12 2.1E-16 80.8 3.5 44 144-187 12-58 (58)
41 1g25_A CDK-activating kinase a 99.2 5.1E-12 1.7E-16 83.4 3.2 48 146-193 2-55 (65)
42 1z6u_A NP95-like ring finger p 99.2 9.3E-12 3.2E-16 95.8 4.2 50 144-193 75-125 (150)
43 1e4u_A Transcriptional repress 99.2 9.6E-12 3.3E-16 85.7 3.5 52 144-195 8-64 (78)
44 4ap4_A E3 ubiquitin ligase RNF 99.2 8.5E-12 2.9E-16 92.6 3.1 48 146-193 6-60 (133)
45 2yho_A E3 ubiquitin-protein li 99.2 5.7E-12 1.9E-16 86.9 1.9 48 147-198 18-66 (79)
46 1jm7_A BRCA1, breast cancer ty 99.2 9.4E-12 3.2E-16 90.3 2.8 47 147-193 21-70 (112)
47 3l11_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 93.8 0.2 48 146-193 14-62 (115)
48 1v87_A Deltex protein 2; ring- 99.2 1.3E-11 4.3E-16 90.2 3.3 47 147-193 25-94 (114)
49 2ckl_B Ubiquitin ligase protei 99.1 2E-11 6.7E-16 94.9 4.1 47 146-192 53-101 (165)
50 3knv_A TNF receptor-associated 99.1 1.1E-11 3.7E-16 94.5 2.4 50 142-191 26-76 (141)
51 1rmd_A RAG1; V(D)J recombinati 99.1 2.8E-11 9.7E-16 88.7 4.2 48 146-193 22-70 (116)
52 2ecl_A Ring-box protein 2; RNF 99.1 2.8E-11 9.7E-16 83.6 3.7 48 146-193 14-76 (81)
53 4ap4_A E3 ubiquitin ligase RNF 99.1 2.5E-11 8.4E-16 90.1 2.9 54 145-198 70-132 (133)
54 1bor_A Transcription factor PM 99.1 8.7E-12 3E-16 80.2 0.2 44 146-192 5-48 (56)
55 2yu4_A E3 SUMO-protein ligase 99.1 5.8E-11 2E-15 84.3 3.2 46 145-190 5-59 (94)
56 2c2l_A CHIP, carboxy terminus 99.1 7.4E-11 2.5E-15 97.8 4.1 50 144-193 205-255 (281)
57 1jm7_B BARD1, BRCA1-associated 99.0 2.4E-11 8E-16 89.5 0.5 45 146-192 21-66 (117)
58 3t6p_A Baculoviral IAP repeat- 99.0 4.4E-11 1.5E-15 103.6 2.1 51 144-198 292-343 (345)
59 2y1n_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 101.9 4.8 51 147-197 332-383 (389)
60 3hcs_A TNF receptor-associated 99.0 1.1E-10 3.6E-15 91.1 3.6 52 142-193 13-65 (170)
61 3dpl_R Ring-box protein 1; ubi 99.0 1.7E-10 5.7E-15 83.9 4.2 47 146-192 36-100 (106)
62 2f42_A STIP1 homology and U-bo 99.0 2.9E-10 9.8E-15 89.9 4.3 50 144-193 103-153 (179)
63 3htk_C E3 SUMO-protein ligase 98.8 2.8E-09 9.7E-14 88.6 4.0 50 143-192 177-231 (267)
64 4a0k_B E3 ubiquitin-protein li 98.8 1.1E-09 3.6E-14 81.0 0.3 47 146-192 47-111 (117)
65 2d8s_A Cellular modulator of i 98.7 5.9E-09 2E-13 71.9 3.5 49 145-193 13-70 (80)
66 2bay_A PRE-mRNA splicing facto 98.7 1.1E-08 3.8E-13 66.9 3.1 47 147-193 3-50 (61)
67 1wim_A KIAA0161 protein; ring 98.6 2.1E-08 7E-13 70.7 2.4 45 146-190 4-61 (94)
68 2ct0_A Non-SMC element 1 homol 98.4 2.2E-07 7.7E-12 63.0 4.5 48 146-193 14-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.2 1.2E-06 4E-11 62.4 4.0 46 149-194 3-50 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.0 3.5E-06 1.2E-10 54.7 3.2 46 147-192 6-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.9 2E-06 6.8E-11 74.0 1.5 49 146-194 307-374 (381)
72 3nw0_A Non-structural maintena 96.6 0.0013 4.4E-08 53.9 3.8 48 146-193 179-229 (238)
73 2ko5_A Ring finger protein Z; 96.4 0.00097 3.3E-08 46.7 1.5 52 144-197 25-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0022 7.7E-08 44.9 2.2 33 146-178 2-37 (101)
75 2cs3_A Protein C14ORF4, MY039 94.9 0.0097 3.3E-07 40.4 1.7 36 145-180 13-52 (93)
76 3m62_A Ubiquitin conjugation f 92.0 0.13 4.6E-06 49.5 4.5 50 144-193 888-938 (968)
77 3i2d_A E3 SUMO-protein ligase 79.5 1.7 5.9E-05 37.5 4.1 46 146-191 248-298 (371)
78 4fo9_A E3 SUMO-protein ligase 78.4 2 6.7E-05 37.0 4.2 47 146-192 214-265 (360)
79 2lri_C Autoimmune regulator; Z 77.2 1.8 6.3E-05 27.8 2.9 45 146-190 11-59 (66)
80 1wil_A KIAA1045 protein; ring 73.4 2.8 9.5E-05 28.6 3.0 33 144-177 12-47 (89)
81 1weo_A Cellulose synthase, cat 70.4 4.4 0.00015 27.8 3.5 46 147-192 16-69 (93)
82 1z60_A TFIIH basal transcripti 70.4 2 6.9E-05 27.2 1.7 40 148-187 16-58 (59)
83 1m3v_A FLIN4, fusion of the LI 69.1 2.6 8.9E-05 30.0 2.3 47 147-193 32-81 (122)
84 2fiy_A Protein FDHE homolog; F 61.6 0.77 2.6E-05 38.7 -2.1 46 145-190 180-231 (309)
85 2l5u_A Chromodomain-helicase-D 57.6 5.6 0.00019 24.9 2.0 45 146-190 10-58 (61)
86 2d8v_A Zinc finger FYVE domain 56.1 6.4 0.00022 25.4 2.1 33 146-179 7-40 (67)
87 2xjy_A Rhombotin-2; oncoprotei 55.5 6.2 0.00021 28.0 2.2 47 146-192 28-77 (131)
88 1rut_X Flinc4, fusion protein 55.5 4 0.00014 31.2 1.2 47 146-192 31-80 (188)
89 2fqh_A Hypothetical protein TA 55.3 3.6 0.00012 28.6 0.8 13 19-31 14-28 (109)
90 2k16_A Transcription initiatio 51.5 3 0.0001 27.1 -0.1 47 147-193 18-71 (75)
91 2xqn_T Testin, TESS; metal-bin 50.4 9.6 0.00033 26.8 2.5 45 146-192 29-74 (126)
92 2rgt_A Fusion of LIM/homeobox 50.0 13 0.00044 27.7 3.3 45 146-192 32-76 (169)
93 2o35_A Hypothetical protein DU 49.1 6.5 0.00022 27.5 1.3 13 168-180 42-54 (105)
94 3fyb_A Protein of unknown func 48.8 6.6 0.00023 27.4 1.3 13 168-180 41-53 (104)
95 3mjh_B Early endosome antigen 48.0 3 0.0001 23.4 -0.4 14 147-160 5-18 (34)
96 2lbm_A Transcriptional regulat 47.6 16 0.00056 27.0 3.4 45 146-190 62-117 (142)
97 1mm2_A MI2-beta; PHD, zinc fin 42.3 3.6 0.00012 25.8 -0.8 46 146-191 8-57 (61)
98 2jtn_A LIM domain-binding prot 41.2 12 0.0004 28.4 1.8 45 146-192 86-130 (182)
99 1joc_A EEA1, early endosomal a 41.2 9.8 0.00034 27.4 1.3 29 148-176 70-102 (125)
100 1zbd_B Rabphilin-3A; G protein 40.5 9.9 0.00034 27.9 1.3 31 146-176 54-89 (134)
101 2jmo_A Parkin; IBR, E3 ligase, 39.4 2.2 7.5E-05 28.4 -2.3 16 164-179 55-70 (80)
102 2l1n_A Uncharacterized protein 39.1 8.5 0.00029 27.6 0.7 13 11-23 80-92 (120)
103 1wfk_A Zinc finger, FYVE domai 37.9 14 0.00048 24.9 1.6 31 146-176 8-42 (88)
104 1z2q_A LM5-1; membrane protein 36.9 15 0.00051 24.4 1.6 30 147-176 21-54 (84)
105 1f62_A Transcription factor WS 36.1 9.2 0.00031 22.7 0.4 41 149-189 2-49 (51)
106 1vfy_A Phosphatidylinositol-3- 35.8 19 0.00064 23.2 1.9 29 147-175 11-43 (73)
107 2yw8_A RUN and FYVE domain-con 34.7 16 0.00054 24.1 1.4 29 148-176 20-52 (82)
108 3t7l_A Zinc finger FYVE domain 34.2 15 0.00053 24.7 1.4 30 148-177 21-54 (90)
109 2puy_A PHD finger protein 21A; 34.0 3.4 0.00012 25.8 -2.0 46 146-191 4-53 (60)
110 1x4u_A Zinc finger, FYVE domai 33.9 16 0.00056 24.1 1.4 30 147-176 14-47 (84)
111 1wd2_A Ariadne-1 protein homol 33.7 4.1 0.00014 25.6 -1.6 32 148-179 7-46 (60)
112 1xwh_A Autoimmune regulator; P 33.5 4 0.00014 26.0 -1.7 45 146-190 7-55 (66)
113 1y02_A CARP2, FYVE-ring finger 33.3 16 0.00055 26.2 1.4 41 147-187 19-63 (120)
114 1dvp_A HRS, hepatocyte growth 32.8 16 0.00056 28.6 1.5 32 145-176 159-194 (220)
115 2gmg_A Hypothetical protein PF 32.1 7.5 0.00026 27.5 -0.6 25 162-191 70-94 (105)
116 3zyq_A Hepatocyte growth facto 31.5 18 0.00062 28.6 1.5 33 144-176 161-197 (226)
117 2zet_C Melanophilin; complex, 30.6 17 0.00059 27.2 1.2 29 146-174 67-100 (153)
118 1fp0_A KAP-1 corepressor; PHD 30.4 11 0.00037 25.7 0.0 45 146-190 24-72 (88)
119 3ql9_A Transcriptional regulat 30.4 43 0.0015 24.3 3.3 46 146-191 56-112 (129)
120 2cup_A Skeletal muscle LIM-pro 29.9 12 0.0004 25.1 0.1 45 146-192 32-77 (101)
121 2yql_A PHD finger protein 21A; 29.6 3.3 0.00011 25.5 -2.5 43 146-188 8-54 (56)
122 1x62_A C-terminal LIM domain p 27.7 35 0.0012 21.7 2.3 25 149-173 17-41 (79)
123 1x61_A Thyroid receptor intera 26.5 79 0.0027 19.3 3.8 35 146-180 32-67 (72)
124 3mpx_A FYVE, rhogef and PH dom 26.1 14 0.00049 31.5 0.0 31 147-177 375-409 (434)
125 2dar_A PDZ and LIM domain prot 25.9 27 0.00093 22.9 1.4 30 148-177 52-82 (90)
126 2pv0_B DNA (cytosine-5)-methyl 25.9 39 0.0013 29.2 2.7 44 147-190 93-148 (386)
127 2lv9_A Histone-lysine N-methyl 25.9 12 0.00042 25.7 -0.4 43 147-190 28-76 (98)
128 2l43_A N-teminal domain from h 25.7 20 0.00069 24.1 0.7 48 144-191 22-76 (88)
129 1x64_A Alpha-actinin-2 associa 25.0 48 0.0016 21.6 2.6 9 168-176 73-81 (89)
130 1wyh_A SLIM 2, skeletal muscle 24.0 46 0.0016 20.5 2.2 33 146-178 32-65 (72)
131 3a1b_A DNA (cytosine-5)-methyl 23.9 39 0.0013 25.5 2.1 41 147-190 79-134 (159)
132 2ku3_A Bromodomain-containing 23.9 14 0.00046 24.0 -0.4 47 144-190 13-66 (71)
133 2d8x_A Protein pinch; LIM doma 23.6 36 0.0012 21.0 1.6 34 146-179 30-64 (70)
134 2jrp_A Putative cytoplasmic pr 23.3 2.4 8.2E-05 28.6 -4.3 9 149-157 4-12 (81)
135 2ysm_A Myeloid/lymphoid or mix 23.3 20 0.0007 24.8 0.4 33 146-178 6-41 (111)
136 1nyp_A Pinch protein; LIM doma 22.7 39 0.0013 20.5 1.6 30 148-177 32-62 (66)
137 2d8z_A Four and A half LIM dom 21.8 47 0.0016 20.3 1.9 33 146-178 30-63 (70)
138 1wev_A Riken cDNA 1110020M19; 20.3 9.1 0.00031 25.8 -1.9 46 147-192 16-74 (88)
139 1wig_A KIAA1808 protein; LIM d 20.2 45 0.0015 20.9 1.6 34 146-179 30-65 (73)
140 3nvw_A Xanthine dehydrogenase/ 20.2 44 0.0015 25.2 1.8 25 4-28 19-49 (164)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=4.3e-14 Score=94.71 Aligned_cols=55 Identities=33% Similarity=0.727 Sum_probs=48.6
Q ss_pred CCCCcccccccccCcce-------EEcCCCCcchHhhHHHHHhcCCCCCCCccccc--cccccC
Q 036555 144 EGSDWMCCVCMERNKGA-------AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII--EILDIF 198 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~-------~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~--~~l~iy 198 (198)
..+.+.|+||++.+.++ +.++|||.||..|+.+|+.....||+||+.+. ++.+||
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 34567899999999887 89999999999999999999999999999986 466666
No 2
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=8e-14 Score=91.36 Aligned_cols=53 Identities=34% Similarity=0.741 Sum_probs=47.1
Q ss_pred CCcccccccccCcce-------EEcCCCCcchHhhHHHHHhcCCCCCCCccccc--cccccC
Q 036555 146 SDWMCCVCMERNKGA-------AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII--EILDIF 198 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-------~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~--~~l~iy 198 (198)
+.+.|+||++.+.++ +.++|||.||..|+.+|+.....||+||+.+. ++.+||
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 356899999999876 88999999999999999999889999999986 567776
No 3
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=93.71 Aligned_cols=49 Identities=20% Similarity=0.588 Sum_probs=45.2
Q ss_pred CCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
...+.|+||++.+.+++.++|||.||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 3567999999999999999999999999999999988899999999864
No 4
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=91.75 Aligned_cols=51 Identities=27% Similarity=0.593 Sum_probs=45.7
Q ss_pred CCCCcccccccccCcceEEc-CCCCcchHhhHHHHHhcCCCCCCCccccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNRGTCPICNRSIIEI 194 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~ 194 (198)
..+.+.|+||++.+.+++.+ +|||.||..||..|+.....||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34567999999999999887 9999999999999999888999999998653
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=90.61 Aligned_cols=54 Identities=26% Similarity=0.594 Sum_probs=46.3
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHh-cCCCCCCCccccccccccC
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWL-NRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~-~~~~CP~Cr~~i~~~l~iy 198 (198)
..+.+.|+||++.+.+++.++|||.||..|+..|+. ....||+||+.+... .||
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~if 66 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD-KVF 66 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT-TCC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh-hcC
Confidence 456789999999999999999999999999999995 455999999998653 344
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.37 E-value=1.1e-13 Score=91.76 Aligned_cols=53 Identities=26% Similarity=0.627 Sum_probs=48.9
Q ss_pred CCcccccccccCcceEEc--CCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 146 SDWMCCVCMERNKGAAFI--PCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~l--pCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
++..|.||++.+.+++++ ||||. ||..|+..|+.....||+||+++..+++||
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 345799999999999987 99999 899999999988889999999999999987
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-13 Score=92.22 Aligned_cols=49 Identities=24% Similarity=0.626 Sum_probs=45.1
Q ss_pred CCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.+.+.|+||++.+.+++.++|||.||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3567899999999999999999999999999999988899999999864
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.37 E-value=2e-13 Score=103.57 Aligned_cols=48 Identities=29% Similarity=0.748 Sum_probs=44.4
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+++.|+||++.+.+|+.+||||+||..||..|+.....||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 356899999999999999999999999999999988899999999864
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.2e-13 Score=89.93 Aligned_cols=50 Identities=26% Similarity=0.665 Sum_probs=44.2
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHh---cCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWL---NRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~---~~~~CP~Cr~~i~~ 193 (198)
..+.+.|+||++.+.+++.++|||.||..|+..|+. ....||+||+.+..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456789999999999999999999999999999996 34499999998854
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.35 E-value=4e-13 Score=89.38 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=45.9
Q ss_pred CCcccccccccCcce-EEcCCCCcchHhhHHHHHhcCCCCCCCcccccccccc
Q 036555 146 SDWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILDI 197 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~i 197 (198)
....|+||++.+.++ +.++|||.||..|+..|+.....||+||+.+..++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 355899999999986 8899999999999999999889999999998776543
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.3e-13 Score=89.64 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=44.8
Q ss_pred CCCCcccccccccCcce-------EEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGA-------AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~-------~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
..+.+.|+||++.+.++ +.++|||.||..|+..|+.....||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999887 889999999999999999998899999998754
No 12
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.35 E-value=1.8e-13 Score=90.53 Aligned_cols=52 Identities=31% Similarity=0.707 Sum_probs=48.0
Q ss_pred CcccccccccCcceEEc--CCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 147 DWMCCVCMERNKGAAFI--PCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~l--pCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
...|.||++.+.+++++ ||||. ||..|+..|+.....||+||+++..+++||
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 45799999999999877 99998 999999999988789999999999999988
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.35 E-value=4.6e-13 Score=91.49 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=44.6
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhc-CCCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN-RGTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~ 192 (198)
..+.+.|+||++.+.+|+.++|||+||..||..|+.. ..+||+||..+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3467899999999999999999999999999999986 669999999985
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=5.4e-13 Score=90.61 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=43.9
Q ss_pred CCCCcccccccccCcceEEcC-CCCcchHhhHHHHHhcC--CCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNR--GTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~--~~CP~Cr~~i~ 192 (198)
..+.+.|+||++.+.+|+.++ |||.||..||..|+... ..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345779999999999999999 99999999999999865 59999999864
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.33 E-value=7.8e-13 Score=93.11 Aligned_cols=48 Identities=31% Similarity=0.833 Sum_probs=43.5
Q ss_pred CCCCcccccccccCcceEEcC-CCCcchHhhHHHHHhcC--CCCCCCcccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNR--GTCPICNRSI 191 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~--~~CP~Cr~~i 191 (198)
..+.+.|+||++.+.+|+.++ |||+||..||..|+... ..||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 456789999999999999999 99999999999999754 4999999987
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-13 Score=90.90 Aligned_cols=53 Identities=26% Similarity=0.742 Sum_probs=46.7
Q ss_pred CCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 145 GSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
.+...|+||++.+.+ +.++|||.||..|+..|+.....||+||+.+.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 456789999999999 89999999999999999998889999999998655443
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=1.7e-12 Score=89.48 Aligned_cols=49 Identities=29% Similarity=0.714 Sum_probs=44.6
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhc------CCCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN------RGTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~------~~~CP~Cr~~i~ 192 (198)
..+.+.|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4467899999999999999999999999999999987 559999999985
No 18
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.32 E-value=3.9e-13 Score=91.52 Aligned_cols=48 Identities=35% Similarity=0.951 Sum_probs=45.0
Q ss_pred CcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 147 DWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
.+.|+||++.+.+++++||||. ||..|+..| ..||+||+.+...++||
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECB
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEe
Confidence 4579999999999999999999 999999988 88999999999999987
No 19
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=86.73 Aligned_cols=51 Identities=27% Similarity=0.663 Sum_probs=44.4
Q ss_pred CCcccccccccCc---ceEEcCCCCcchHhhHHHHHhcCCCCCCCccccccccc
Q 036555 146 SDWMCCVCMERNK---GAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILD 196 (198)
Q Consensus 146 ~~~~C~IC~~~~~---~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~ 196 (198)
....|+||++.+. .++.++|+|.||..|+..|+....+||+||+.+...++
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4568999999874 45789999999999999999999999999999876553
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=84.92 Aligned_cols=44 Identities=27% Similarity=0.721 Sum_probs=39.6
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhc---CCCCCCC
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN---RGTCPIC 187 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~---~~~CP~C 187 (198)
..+.+.|+||++.+.+++.++|||.||..||.+|+.. ...||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999999999999999999999999984 4489998
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=1.3e-12 Score=83.12 Aligned_cols=47 Identities=28% Similarity=0.700 Sum_probs=42.3
Q ss_pred CCcccccccccCcc----eEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKG----AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~----~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
....|+||++.+.+ ++.++|+|.||..|+.+|+.....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999999865 788999999999999999999899999999874
No 22
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.30 E-value=1e-12 Score=83.76 Aligned_cols=47 Identities=32% Similarity=0.793 Sum_probs=41.8
Q ss_pred CCCcccccccccCcc---eEEcC-CCCcchHhhHHHHHhcCCCCCCCcccc
Q 036555 145 GSDWMCCVCMERNKG---AAFIP-CGHTFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~---~~~lp-CgH~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
.+...|+||++.+.. ++.++ |||.||..|+.+|+....+||+||+.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 346689999999987 67787 999999999999999988999999876
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=93.86 Aligned_cols=47 Identities=26% Similarity=0.684 Sum_probs=43.3
Q ss_pred CCcccccccccCcceEE-cCCCCcchHhhHHHHHhcC-CCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAF-IPCGHTFCRVCSRDLWLNR-GTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~-lpCgH~FC~~Ci~~~~~~~-~~CP~Cr~~i~ 192 (198)
+.+.|+||++.+.+|+. ++|||.||..||..|+... ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45689999999999999 9999999999999999988 59999999985
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=90.00 Aligned_cols=49 Identities=31% Similarity=0.705 Sum_probs=44.1
Q ss_pred CCCCcccccccccCcc----eEEcCCCCcchHhhHHHHHhcC---CCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNKG----AAFIPCGHTFCRVCSRDLWLNR---GTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~----~~~lpCgH~FC~~Ci~~~~~~~---~~CP~Cr~~i~ 192 (198)
..+.+.|+||++.+.+ ++.++|||.||..|+..|+... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 4467799999999998 9999999999999999999876 69999999874
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=89.19 Aligned_cols=49 Identities=27% Similarity=0.690 Sum_probs=44.7
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhc------CCCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN------RGTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~------~~~CP~Cr~~i~ 192 (198)
..+.+.|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4567899999999999999999999999999999987 669999999886
No 26
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=2.7e-12 Score=89.72 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=46.2
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
..+.+.|+||++.+.+|+.++|||+||+.||..|+....+||+|+.++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 44688999999999999999999999999999999988899999998864
No 27
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=88.31 Aligned_cols=52 Identities=31% Similarity=0.721 Sum_probs=44.5
Q ss_pred CCCcccccccccCcce---EEcCCCCcchHhhHHHHHhcCCCCCCCccccccccc
Q 036555 145 GSDWMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIEILD 196 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~ 196 (198)
.....|+||++.+..+ +.++|+|.||..|+.+|+.....||+||+.+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3466899999998765 445999999999999999998999999999877544
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=96.33 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=43.6
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4568999999999999999999999999999998555 99999999865
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=4.4e-13 Score=91.56 Aligned_cols=49 Identities=27% Similarity=0.669 Sum_probs=44.2
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhc-------CCCCCCCccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN-------RGTCPICNRSII 192 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~-------~~~CP~Cr~~i~ 192 (198)
..+.+.|+||++.+.+++.++|||.||..|+..|+.. ...||+||..+.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4567899999999999999999999999999999886 459999999985
No 30
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=86.91 Aligned_cols=47 Identities=38% Similarity=0.987 Sum_probs=43.4
Q ss_pred cccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 148 WMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 148 ~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
..|+||++.+.+++++||||. ||..|+... ..||+||..+...++||
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEe
Confidence 479999999999999999999 999999653 78999999999999998
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=91.47 Aligned_cols=48 Identities=27% Similarity=0.634 Sum_probs=43.1
Q ss_pred CCcccccccccCcc---eEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKG---AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~---~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
....|+||++.+.. ++.++|+|.||..||..|+....+||+||+.+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999999877 6789999999999999999988899999998864
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=3.1e-12 Score=92.14 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=46.2
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
..+.+.|+||++.+.+|+.++|||+||+.||..|+....+||+|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45689999999999999999999999999999999988899999999863
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.26 E-value=2.7e-12 Score=93.17 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=45.0
Q ss_pred CCCcccccccccCcceEEc-CCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.+.+.|+||++.+.+|+.+ +|||.||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4577999999999999997 999999999999999988899999999864
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.26 E-value=2.2e-12 Score=88.04 Aligned_cols=49 Identities=31% Similarity=0.680 Sum_probs=43.0
Q ss_pred CCCcccccccccCcce---EEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 145 GSDWMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.....|+||++.+..+ +.++|+|.||..||.+|+.....||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3567899999998754 667999999999999999988899999999865
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=4e-12 Score=90.78 Aligned_cols=48 Identities=29% Similarity=0.736 Sum_probs=43.9
Q ss_pred CCcccccccccCcceEEc-CCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+.+.|+||++.+.+++.+ +|||.||..|+..|+.....||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456899999999999888 899999999999999988899999998863
No 36
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.5e-12 Score=86.31 Aligned_cols=49 Identities=27% Similarity=0.717 Sum_probs=45.0
Q ss_pred CCcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
+...|.||++.+.+++++||||. ||..|+... ..||+||..|..+++||
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALS 63 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEee
Confidence 46689999999999999999999 999999853 79999999999999988
No 37
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=87.48 Aligned_cols=48 Identities=29% Similarity=0.650 Sum_probs=42.9
Q ss_pred CCcccccccccCcce---EEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGA---AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~---~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+...|+||++.+..+ +.++|+|.||..|+..|+.....||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 456899999998876 778999999999999999998999999998754
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.24 E-value=7.1e-12 Score=89.94 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCCCcccccccccCcceEEcCCC-CcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCG-HTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCg-H~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
..+++.|+||++.+.+||.++|| |+||+.||..|+....+||+|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45688999999999999999999 999999999999988899999999863
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.22 E-value=5.1e-12 Score=93.21 Aligned_cols=51 Identities=31% Similarity=0.752 Sum_probs=46.0
Q ss_pred cCCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 143 REGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 143 ~~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
...+.+.|+||++.+.+|+.++|||.||..|+..|+.... .||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4556789999999999999999999999999999998766 99999999864
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.1e-12 Score=80.81 Aligned_cols=44 Identities=36% Similarity=0.929 Sum_probs=38.7
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHh---cCCCCCCC
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWL---NRGTCPIC 187 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~---~~~~CP~C 187 (198)
..+.+.|+||++.+.+++.++|||.||..|+..|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 446779999999999999999999999999999965 34599998
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=5.1e-12 Score=83.41 Aligned_cols=48 Identities=29% Similarity=0.740 Sum_probs=40.5
Q ss_pred CCcccccccc-cCcce----EEcCCCCcchHhhHHHHHhcC-CCCCCCcccccc
Q 036555 146 SDWMCCVCME-RNKGA----AFIPCGHTFCRVCSRDLWLNR-GTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~-~~~~~----~~lpCgH~FC~~Ci~~~~~~~-~~CP~Cr~~i~~ 193 (198)
+++.|+||++ .+.++ +.++|||.||..|+.+|+... ..||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3568999999 78777 578999999999999997654 489999999853
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.19 E-value=9.3e-12 Score=95.84 Aligned_cols=50 Identities=22% Similarity=0.567 Sum_probs=44.9
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
..+.+.|+||++.+.+|+.++|||+||..||..|+.... .||+||..+..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 345679999999999999999999999999999998765 89999999864
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=9.6e-12 Score=85.66 Aligned_cols=52 Identities=31% Similarity=0.730 Sum_probs=41.8
Q ss_pred CCCCcccccccccCc--ceEEcC--CCCcchHhhHHHHHhc-CCCCCCCcccccccc
Q 036555 144 EGSDWMCCVCMERNK--GAAFIP--CGHTFCRVCSRDLWLN-RGTCPICNRSIIEIL 195 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~--~~~~lp--CgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~~~l 195 (198)
..+++.|+||++.+. +++++| |||.||..|+..++.. ...||.||+++....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 346779999999884 456666 9999999999998854 459999999987543
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=8.5e-12 Score=92.64 Aligned_cols=48 Identities=35% Similarity=0.794 Sum_probs=44.5
Q ss_pred CCcccccccccCcce-------EEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGA-------AFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-------~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
+.+.|+||++.+.++ +.++|||.||..||.+|+....+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 567999999999988 999999999999999999998999999999863
No 45
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.17 E-value=5.7e-12 Score=86.92 Aligned_cols=48 Identities=33% Similarity=0.993 Sum_probs=44.1
Q ss_pred CcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 147 DWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
...|+||++.+.+++++||||. ||..|+..+ ..||+||..+..+++||
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECB
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEE
Confidence 3479999999999999999999 999999876 48999999999998887
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=9.4e-12 Score=90.33 Aligned_cols=47 Identities=30% Similarity=0.749 Sum_probs=42.3
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHHHhcCC---CCCCCcccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG---TCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~---~CP~Cr~~i~~ 193 (198)
.+.|+||++.+.+++.++|||.||..|+..|+.... .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 457999999999999999999999999999998654 89999998763
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=3.1e-12 Score=93.76 Aligned_cols=48 Identities=31% Similarity=0.750 Sum_probs=43.1
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhc-CCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN-RGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~~ 193 (198)
+++.|+||++.+.+|+.++|||+||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 46789999999999999999999999999999876 4599999998753
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.16 E-value=1.3e-11 Score=90.17 Aligned_cols=47 Identities=28% Similarity=0.614 Sum_probs=39.5
Q ss_pred CcccccccccCcceE------------------EcCCCCcchHhhHHHHHh-----cCCCCCCCcccccc
Q 036555 147 DWMCCVCMERNKGAA------------------FIPCGHTFCRVCSRDLWL-----NRGTCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~------------------~lpCgH~FC~~Ci~~~~~-----~~~~CP~Cr~~i~~ 193 (198)
+..|+||++.+..+. .++|+|.||..||..|+. ...+||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 347999999986543 789999999999999994 35599999998854
No 49
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.15 E-value=2e-11 Score=94.94 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=42.8
Q ss_pred CCcccccccccCcceEEc-CCCCcchHhhHHHHHhc-CCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLN-RGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~ 192 (198)
+.+.|+||++.+.+++.+ +|||.||..|+..|+.. ...||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 466899999999999887 99999999999999997 669999999984
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.14 E-value=1.1e-11 Score=94.52 Aligned_cols=50 Identities=18% Similarity=0.567 Sum_probs=44.7
Q ss_pred ccCCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccc
Q 036555 142 LREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSI 191 (198)
Q Consensus 142 ~~~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i 191 (198)
....+.+.|+||++.+.+|+.++|||.||..||..|+.... .||+||.++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34557889999999999999999999999999999998765 999999964
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.13 E-value=2.8e-11 Score=88.70 Aligned_cols=48 Identities=23% Similarity=0.534 Sum_probs=43.8
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhc-CCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLN-RGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~~ 193 (198)
+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 46789999999999999999999999999999987 5699999999864
No 52
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=83.58 Aligned_cols=48 Identities=19% Similarity=0.506 Sum_probs=40.0
Q ss_pred CCcccccccccCcc--------------eEEc-CCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKG--------------AAFI-PCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~--------------~~~l-pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
++..|+||++.+.+ ++.+ +|+|.||..||.+|+....+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34579999998865 3444 599999999999999999999999998753
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.5e-11 Score=90.11 Aligned_cols=54 Identities=33% Similarity=0.744 Sum_probs=47.8
Q ss_pred CCCcccccccccCcce-------EEcCCCCcchHhhHHHHHhcCCCCCCCccccc--cccccC
Q 036555 145 GSDWMCCVCMERNKGA-------AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII--EILDIF 198 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~-------~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~--~~l~iy 198 (198)
.+...|+||++.+.++ +.++|||.||..|+.+|+....+||+||.++. ++++||
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 3567899999998876 88999999999999999999999999999986 466776
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=8.7e-12 Score=80.25 Aligned_cols=44 Identities=30% Similarity=0.661 Sum_probs=39.2
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||+.+.
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 4678999999999999999999999999977 3458999999875
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=5.8e-11 Score=84.29 Aligned_cols=46 Identities=26% Similarity=0.505 Sum_probs=41.0
Q ss_pred CCCcccccccccCcceEEcC-CCCcchHhhHHHHHhcC------CCCCC--Cccc
Q 036555 145 GSDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNR------GTCPI--CNRS 190 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~------~~CP~--Cr~~ 190 (198)
...+.|+||++.+.+||.++ |||+||..||..|+... .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46789999999999999996 99999999999999864 39999 9855
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=7.4e-11 Score=97.83 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
....+.|+||++.+.+||.++|||+||..||..|+...+ +||+|+.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 346789999999999999999999999999999998654 59999999863
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=2.4e-11 Score=89.46 Aligned_cols=45 Identities=24% Similarity=0.590 Sum_probs=41.2
Q ss_pred CCcccccccccCcceEEc-CCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+.+.|+||++.+.+|+.+ +|||+||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 356899999999999999 9999999999999987 78999999884
No 58
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.04 E-value=4.4e-11 Score=103.63 Aligned_cols=51 Identities=37% Similarity=0.904 Sum_probs=47.4
Q ss_pred CCCCcccccccccCcceEEcCCCCc-chHhhHHHHHhcCCCCCCCccccccccccC
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHT-FCRVCSRDLWLNRGTCPICNRSIIEILDIF 198 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~-FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~iy 198 (198)
..+...|+||++.+.+++++||||. ||..|+..| ..||+||.++..+++||
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEee
Confidence 4567899999999999999999999 999999887 78999999999999998
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.04 E-value=1.3e-10 Score=101.86 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=45.3
Q ss_pred CcccccccccCcceEEcCCCCcchHhhHHHHHh-cCCCCCCCcccccccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWL-NRGTCPICNRSIIEILDI 197 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~-~~~~CP~Cr~~i~~~l~i 197 (198)
...|+||++.+.+++.+||||.||..|+..|+. ....||+||..+.....|
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 468999999999999999999999999999998 567999999999765443
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=91.12 Aligned_cols=52 Identities=31% Similarity=0.723 Sum_probs=46.3
Q ss_pred ccCCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 142 LREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 142 ~~~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
..+.+.+.|+||++.+.+|+.++|||+||..|+.+|+.... .||+||..+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34567889999999999999999999999999999998655 99999999864
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.02 E-value=1.7e-10 Score=83.94 Aligned_cols=47 Identities=26% Similarity=0.436 Sum_probs=40.9
Q ss_pred CCcccccccccCcce------------------EEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGA------------------AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~------------------~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
++..|+||++.+..+ +.++|+|.||..||..|+..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999988754 55799999999999999999899999999853
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=2.9e-10 Score=89.94 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCCCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC-CCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG-TCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~-~CP~Cr~~i~~ 193 (198)
....+.|+||++.+.+||.++|||+||..||..|+...+ +||+|+.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 346789999999999999999999999999999998744 69999999864
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.8e-09 Score=88.57 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=43.9
Q ss_pred cCCCCcccccccccCcceEEc-CCCCcchHhhHHHHHhcCC--CCCC--Cccccc
Q 036555 143 REGSDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNRG--TCPI--CNRSII 192 (198)
Q Consensus 143 ~~~~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~~--~CP~--Cr~~i~ 192 (198)
.....+.|+||++.+.+||.. .|||+||..||..|+...+ .||+ |++.+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 456788999999999999985 9999999999999998643 8999 999874
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.75 E-value=1.1e-09 Score=80.99 Aligned_cols=47 Identities=26% Similarity=0.436 Sum_probs=0.9
Q ss_pred CCcccccccccCcce------------------EEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGA------------------AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~------------------~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
.+..|+||++.+.++ +.++|+|.||..||..|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 345899999998753 23589999999999999999899999999853
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=5.9e-09 Score=71.93 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=40.7
Q ss_pred CCCcccccccccCc--ceEEcCCC-----CcchHhhHHHHHhcCC--CCCCCcccccc
Q 036555 145 GSDWMCCVCMERNK--GAAFIPCG-----HTFCRVCSRDLWLNRG--TCPICNRSIIE 193 (198)
Q Consensus 145 ~~~~~C~IC~~~~~--~~~~lpCg-----H~FC~~Ci~~~~~~~~--~CP~Cr~~i~~ 193 (198)
.+...|.||++.+. +++++||. |.||..||.+|+.... +||+||..+.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34568999998774 46788996 9999999999998764 99999999853
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.66 E-value=1.1e-08 Score=66.94 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=43.0
Q ss_pred CcccccccccCcceEEc-CCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 147 DWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.+.|+||++.+.+|+.+ ++||+|++.||.+|+...++||+.+.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 46899999999999999 899999999999999988899999999853
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=2.1e-08 Score=70.74 Aligned_cols=45 Identities=20% Similarity=0.523 Sum_probs=37.2
Q ss_pred CCcccccccccCcceEE---cCCCCcchHhhHHHHHhcC--------CCCCC--Cccc
Q 036555 146 SDWMCCVCMERNKGAAF---IPCGHTFCRVCSRDLWLNR--------GTCPI--CNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~---lpCgH~FC~~Ci~~~~~~~--------~~CP~--Cr~~ 190 (198)
+.+.|+||++.+..+.. .+|||.||..|+..++... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46789999999887643 3799999999999988741 28999 9988
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2.2e-07 Score=63.01 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=40.0
Q ss_pred CCcccccccccCcceEEc-CCCCcchHhhHHHHHhcC--CCCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFI-PCGHTFCRVCSRDLWLNR--GTCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~l-pCgH~FC~~Ci~~~~~~~--~~CP~Cr~~i~~ 193 (198)
....|.||++.+.....- .|+|.|+..||.+|+..+ .+||+||..+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345899999998755433 799999999999999987 699999988753
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.19 E-value=1.2e-06 Score=62.38 Aligned_cols=46 Identities=30% Similarity=0.597 Sum_probs=38.2
Q ss_pred ccccccccCcc-eEEcCCCCcchHhhHHHHHhc-CCCCCCCccccccc
Q 036555 149 MCCVCMERNKG-AAFIPCGHTFCRVCSRDLWLN-RGTCPICNRSIIEI 194 (198)
Q Consensus 149 ~C~IC~~~~~~-~~~lpCgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~~~ 194 (198)
.|++|--.+.. ...+||.|.||+.|+..|.+. .+.||.|+.++..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 68888777664 477899999999999999864 56999999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.01 E-value=3.5e-06 Score=54.72 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=37.6
Q ss_pred CcccccccccCcceEEcCCC--C---cchHhhHHHHHhc--CCCCCCCccccc
Q 036555 147 DWMCCVCMERNKGAAFIPCG--H---TFCRVCSRDLWLN--RGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lpCg--H---~FC~~Ci~~~~~~--~~~CP~Cr~~i~ 192 (198)
...|.||++...++.++||. | .||..|+.+|+.. ..+||+|+..|.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45799999887777778965 4 6999999999975 459999998864
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.95 E-value=2e-06 Score=74.03 Aligned_cols=49 Identities=18% Similarity=0.510 Sum_probs=38.9
Q ss_pred CCcccccccccCcc-e-------EEcCCCCcchHhhHHHHHhcC-----------CCCCCCccccccc
Q 036555 146 SDWMCCVCMERNKG-A-------AFIPCGHTFCRVCSRDLWLNR-----------GTCPICNRSIIEI 194 (198)
Q Consensus 146 ~~~~C~IC~~~~~~-~-------~~lpCgH~FC~~Ci~~~~~~~-----------~~CP~Cr~~i~~~ 194 (198)
....|+||+..+.+ . ...+|+|.||..|+.+|+... +.||.||++|..-
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 35589999998876 1 124799999999999999752 3799999998653
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.64 E-value=0.0013 Score=53.86 Aligned_cols=48 Identities=19% Similarity=0.417 Sum_probs=39.6
Q ss_pred CCcccccccccCcceEEcC-CCCcchHhhHHHHHhcCC--CCCCCcccccc
Q 036555 146 SDWMCCVCMERNKGAAFIP-CGHTFCRVCSRDLWLNRG--TCPICNRSIIE 193 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lp-CgH~FC~~Ci~~~~~~~~--~CP~Cr~~i~~ 193 (198)
....|.||.+.......=+ |+|.||..|+..|+..+. .||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3568999999888665544 999999999999998655 99999988653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.43 E-value=0.00097 Score=46.67 Aligned_cols=52 Identities=29% Similarity=0.577 Sum_probs=42.4
Q ss_pred CCCCcccccccccCcceEEcCCC-CcchHhhHHHHHhcCCCCCCCcccccccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCG-HTFCRVCSRDLWLNRGTCPICNRSIIEILDI 197 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCg-H~FC~~Ci~~~~~~~~~CP~Cr~~i~~~l~i 197 (198)
.-..+.|..|.-..+. ++.|. |.+|..|+..++.....||+|..++...|.+
T Consensus 25 ~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3456789999877775 55676 7899999999999999999999999876653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.16 E-value=0.0022 Score=44.93 Aligned_cols=33 Identities=18% Similarity=0.586 Sum_probs=27.1
Q ss_pred CCccccccccc-CcceEE--cCCCCcchHhhHHHHH
Q 036555 146 SDWMCCVCMER-NKGAAF--IPCGHTFCRVCSRDLW 178 (198)
Q Consensus 146 ~~~~C~IC~~~-~~~~~~--lpCgH~FC~~Ci~~~~ 178 (198)
+++.|.||.+. +..++. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 35689999976 567766 8999999999999843
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.94 E-value=0.0097 Score=40.42 Aligned_cols=36 Identities=33% Similarity=0.791 Sum_probs=30.3
Q ss_pred CCCcccccccccCcceEEcCC----CCcchHhhHHHHHhc
Q 036555 145 GSDWMCCVCMERNKGAAFIPC----GHTFCRVCSRDLWLN 180 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lpC----gH~FC~~Ci~~~~~~ 180 (198)
...+.|.+|.+++.+.-|+.| .|.||..|.+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 467899999999999877766 588999999888764
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.97 E-value=0.13 Score=49.53 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=45.4
Q ss_pred CCCCcccccccccCcceEEcCCC-CcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 144 EGSDWMCCVCMERNKGAAFIPCG-HTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lpCg-H~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
.-+.+.|||-.+.+.+||.+|-| ++|-+..|.+|+..+.+||+=|.++..
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 45688999999999999999998 589999999999988899999998864
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=79.50 E-value=1.7 Score=37.51 Aligned_cols=46 Identities=26% Similarity=0.425 Sum_probs=33.4
Q ss_pred CCcccccccccCcceEE-cCCCCc--chHhhHHHHHhcCC--CCCCCcccc
Q 036555 146 SDWMCCVCMERNKGAAF-IPCGHT--FCRVCSRDLWLNRG--TCPICNRSI 191 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~-lpCgH~--FC~~Ci~~~~~~~~--~CP~Cr~~i 191 (198)
-.+.||+-..++..|+. ..|.|. |-..-+..+..... .||+|.+.+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 35799999999998855 569998 44444444444333 999999886
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=78.44 E-value=2 Score=36.98 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCcccccccccCcceEE-cCCCCc--chHhhHHHHHhcCC--CCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAF-IPCGHT--FCRVCSRDLWLNRG--TCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~-lpCgH~--FC~~Ci~~~~~~~~--~CP~Cr~~i~ 192 (198)
-.+.|||-..++..|+. ..|.|. |-..-+..+..... .||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 35689999999998855 569999 55554445444433 9999998874
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=77.18 E-value=1.8 Score=27.84 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=29.6
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCCccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPICNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr~~ 190 (198)
....|.||.+.-.-..--.|...||..|+...+.... .||.|...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4457999986433111124777899999976555432 89999754
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.44 E-value=2.8 Score=28.59 Aligned_cols=33 Identities=30% Similarity=0.612 Sum_probs=23.7
Q ss_pred CCCCcccccccccCcceEEcC---CCCcchHhhHHHH
Q 036555 144 EGSDWMCCVCMERNKGAAFIP---CGHTFCRVCSRDL 177 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~~~lp---CgH~FC~~Ci~~~ 177 (198)
+..+..|.||-..- ...++| |+-.||..|+.++
T Consensus 12 ~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 34677999997333 333555 6788999999997
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.44 E-value=4.4 Score=27.84 Aligned_cols=46 Identities=26% Similarity=0.665 Sum_probs=32.5
Q ss_pred CcccccccccCc----ceEEcC---CCCcchHhhHHHHHhc-CCCCCCCccccc
Q 036555 147 DWMCCVCMERNK----GAAFIP---CGHTFCRVCSRDLWLN-RGTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~----~~~~lp---CgH~FC~~Ci~~~~~~-~~~CP~Cr~~i~ 192 (198)
...|.||-+..- ..+|+. |+-..|..|+.--.+. ...||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 458999988643 125555 5556899999765554 449999998875
No 82
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=70.43 E-value=2 Score=27.18 Aligned_cols=40 Identities=25% Similarity=0.554 Sum_probs=28.4
Q ss_pred cccccccccCcceE---EcCCCCcchHhhHHHHHhcCCCCCCC
Q 036555 148 WMCCVCMERNKGAA---FIPCGHTFCRVCSRDLWLNRGTCPIC 187 (198)
Q Consensus 148 ~~C~IC~~~~~~~~---~lpCgH~FC~~Ci~~~~~~~~~CP~C 187 (198)
..|-.|+..+.+.. -..|++.||..|-.=....=..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35989998886543 23588999999964433334499988
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=69.05 E-value=2.6 Score=29.96 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=36.3
Q ss_pred CcccccccccCc---ceEEcCCCCcchHhhHHHHHhcCCCCCCCcccccc
Q 036555 147 DWMCCVCMERNK---GAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~---~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~~ 193 (198)
-+.|..|...+. ...+..=+..||..|..+.+.....|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 368889988885 23455567779999999887755589999998864
No 84
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=61.60 E-value=0.77 Score=38.72 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=35.7
Q ss_pred CCCcccccccccCcceEEcC----CC--CcchHhhHHHHHhcCCCCCCCccc
Q 036555 145 GSDWMCCVCMERNKGAAFIP----CG--HTFCRVCSRDLWLNRGTCPICNRS 190 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~~~lp----Cg--H~FC~~Ci~~~~~~~~~CP~Cr~~ 190 (198)
+....||||-....-.++.. =| +.+|..|-..|...+..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45679999998776554432 34 348999999999888899999876
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=57.55 E-value=5.6 Score=24.91 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=27.8
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCCccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPICNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr~~ 190 (198)
++..|.||...-.-..--.|...||..|+..-+.... .||.|...
T Consensus 10 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4568999987421111114666799999976433221 89999653
No 86
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.12 E-value=6.4 Score=25.44 Aligned_cols=33 Identities=27% Similarity=0.615 Sum_probs=24.1
Q ss_pred CCcccccccccCcceEEcCC-CCcchHhhHHHHHh
Q 036555 146 SDWMCCVCMERNKGAAFIPC-GHTFCRVCSRDLWL 179 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpC-gH~FC~~Ci~~~~~ 179 (198)
+..-|.||.+.- .-.-+.| +-.||..|..+...
T Consensus 7 e~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 7 GLPWCCICNEDA-TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCSSCTTTCSCC-CEEETTTTSEEECSSHHHHHTT
T ss_pred CCCeeEEeCCCC-eEEecCCCCceehHHHHHHHcc
Confidence 345799999873 2345678 67799999988753
No 87
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=55.54 E-value=6.2 Score=27.98 Aligned_cols=47 Identities=23% Similarity=0.448 Sum_probs=35.9
Q ss_pred CCcccccccccCc---ceEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNK---GAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~---~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+-+.|..|...+. ...+..=+..||..|..+.+.....|..|..+|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 5678999988875 2445556677999999887664448999999885
No 88
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=55.52 E-value=4 Score=31.24 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=35.6
Q ss_pred CCcccccccccCcc---eEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKG---AAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~---~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+-+.|..|...+.. ..+..=+..||..|..+.+.....|..|...|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 45788899888764 455556777999999887654337999999885
No 89
>2fqh_A Hypothetical protein TA0938; structural genomics, Zn-binding,, ontario centre for structural proteomics, OCSP, unknown function; NMR {Thermoplasma acidophilum}
Probab=55.31 E-value=3.6 Score=28.63 Aligned_cols=13 Identities=46% Similarity=1.291 Sum_probs=9.3
Q ss_pred ccccccc--ccCCCC
Q 036555 19 RLKGMGC--CGSMWS 31 (198)
Q Consensus 19 ~~~~~~c--c~~~w~ 31 (198)
|=|--|| ||++|+
T Consensus 14 G~k~tGCALCG~tWg 28 (109)
T 2fqh_A 14 GSKSKGCALCGATWG 28 (109)
T ss_dssp CSGGGSCSSCCCSCC
T ss_pred cccccceeeeCCchH
Confidence 3344588 999996
No 90
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=51.47 E-value=3 Score=27.14 Aligned_cols=47 Identities=23% Similarity=0.581 Sum_probs=31.0
Q ss_pred CcccccccccCcceEEc---CCCCcchHhhHHHHHhc----CCCCCCCcccccc
Q 036555 147 DWMCCVCMERNKGAAFI---PCGHTFCRVCSRDLWLN----RGTCPICNRSIIE 193 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~l---pCgH~FC~~Ci~~~~~~----~~~CP~Cr~~i~~ 193 (198)
...|.||........++ .|...||..|+...... .-.||.|...+.+
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 45799998765443344 36666999998643332 2289999877654
No 91
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=50.42 E-value=9.6 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=34.4
Q ss_pred CCcccccccccCcce-EEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+-+.|..|...+... ....=|..||..|..+.+ ...|..|..+|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCC
Confidence 457889998887764 444567779999987753 468999999987
No 92
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=49.95 E-value=13 Score=27.71 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=34.4
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+-+.|..|...+....+..=|..||..|..+.+. ..|..|...|.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--CBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc--ccccccccccC
Confidence 5578999988877655555667799999877643 68999988875
No 93
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=49.08 E-value=6.5 Score=27.51 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=11.1
Q ss_pred cchHhhHHHHHhc
Q 036555 168 TFCRVCSRDLWLN 180 (198)
Q Consensus 168 ~FC~~Ci~~~~~~ 180 (198)
.||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999874
No 94
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.84 E-value=6.6 Score=27.43 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=11.1
Q ss_pred cchHhhHHHHHhc
Q 036555 168 TFCRVCSRDLWLN 180 (198)
Q Consensus 168 ~FC~~Ci~~~~~~ 180 (198)
.||+.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999873
No 95
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=48.01 E-value=3 Score=23.38 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=10.1
Q ss_pred CcccccccccCcce
Q 036555 147 DWMCCVCMERNKGA 160 (198)
Q Consensus 147 ~~~C~IC~~~~~~~ 160 (198)
.+.||+|+..+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46788888777654
No 96
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=47.60 E-value=16 Score=27.04 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=29.3
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHh---------cCC--CCCCCccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWL---------NRG--TCPICNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~---------~~~--~CP~Cr~~ 190 (198)
.+..|.||.+--.-..--.|-..||..|+...+. ... .||.|+..
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3457999986544222225667799999986542 122 89999843
No 97
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=42.27 E-value=3.6 Score=25.83 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=27.1
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCCcccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPICNRSI 191 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr~~i 191 (198)
++..|.||...-.-..--.|...||..|+..-+.... .||.|....
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4557999986322111113666799999874333211 799997543
No 98
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=41.19 E-value=12 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=32.7
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+-+.|..|...+....+..=|..||..|..+.+ ...|..|+..|.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccC
Confidence 457888898877665454456669999987653 368888988875
No 99
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.16 E-value=9.8 Score=27.41 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=21.6
Q ss_pred cccccccccCcce----EEcCCCCcchHhhHHH
Q 036555 148 WMCCVCMERNKGA----AFIPCGHTFCRVCSRD 176 (198)
Q Consensus 148 ~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~ 176 (198)
..|.+|...|.-. --..||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4799999887632 2246999999999754
No 100
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.48 E-value=9.9 Score=27.87 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCcccccccccCc-----ceEEcCCCCcchHhhHHH
Q 036555 146 SDWMCCVCMERNK-----GAAFIPCGHTFCRVCSRD 176 (198)
Q Consensus 146 ~~~~C~IC~~~~~-----~~~~lpCgH~FC~~Ci~~ 176 (198)
+...|.+|...|. ..+-..|.|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 4568999998873 224456999999988643
No 101
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.44 E-value=2.2 Score=28.40 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=13.2
Q ss_pred CCCCcchHhhHHHHHh
Q 036555 164 PCGHTFCRVCSRDLWL 179 (198)
Q Consensus 164 pCgH~FC~~Ci~~~~~ 179 (198)
.|+|.||..|...|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5899999999988743
No 102
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=39.08 E-value=8.5 Score=27.65 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=11.6
Q ss_pred HHHHHHHhccccc
Q 036555 11 WQNLKQRLRLKGM 23 (198)
Q Consensus 11 ~~~~~~~l~~~~~ 23 (198)
.+.|||.|||||.
T Consensus 80 KQlLKe~LgFkGY 92 (120)
T 2l1n_A 80 KQLLKEELGFAGY 92 (120)
T ss_dssp TTHHHHTTCCCCC
T ss_pred HHHHHHhcCCCce
Confidence 5789999999996
No 103
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.94 E-value=14 Score=24.88 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=21.6
Q ss_pred CCcccccccccCcce----EEcCCCCcchHhhHHH
Q 036555 146 SDWMCCVCMERNKGA----AFIPCGHTFCRVCSRD 176 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~ 176 (198)
+...|.+|...|.-- --..||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 344799998877632 2246999999988743
No 104
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=36.87 E-value=15 Score=24.40 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=22.2
Q ss_pred CcccccccccCcce----EEcCCCCcchHhhHHH
Q 036555 147 DWMCCVCMERNKGA----AFIPCGHTFCRVCSRD 176 (198)
Q Consensus 147 ~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~ 176 (198)
...|.+|...|.-- --..||+.||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45799999887632 2246999999999754
No 105
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.08 E-value=9.2 Score=22.70 Aligned_cols=41 Identities=27% Similarity=0.697 Sum_probs=24.6
Q ss_pred ccccccccCcceEEc---CCCCcchHhhHHHHHhcCC----CCCCCcc
Q 036555 149 MCCVCMERNKGAAFI---PCGHTFCRVCSRDLWLNRG----TCPICNR 189 (198)
Q Consensus 149 ~C~IC~~~~~~~~~l---pCgH~FC~~Ci~~~~~~~~----~CP~Cr~ 189 (198)
.|.||...-....++ .|...||..|+..-+.... .||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477887554322222 4666799999964333221 7998864
No 106
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.75 E-value=19 Score=23.19 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=21.4
Q ss_pred CcccccccccCcce----EEcCCCCcchHhhHH
Q 036555 147 DWMCCVCMERNKGA----AFIPCGHTFCRVCSR 175 (198)
Q Consensus 147 ~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~ 175 (198)
+..|.+|...|.-- --..||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 34799999887632 224699999999974
No 107
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=34.73 E-value=16 Score=24.15 Aligned_cols=29 Identities=31% Similarity=0.699 Sum_probs=21.5
Q ss_pred cccccccccCcce----EEcCCCCcchHhhHHH
Q 036555 148 WMCCVCMERNKGA----AFIPCGHTFCRVCSRD 176 (198)
Q Consensus 148 ~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~ 176 (198)
..|.+|...|.-- --..||..||..|...
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4799999887632 2246999999999754
No 108
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.25 E-value=15 Score=24.71 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=21.9
Q ss_pred cccccccccCcce----EEcCCCCcchHhhHHHH
Q 036555 148 WMCCVCMERNKGA----AFIPCGHTFCRVCSRDL 177 (198)
Q Consensus 148 ~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~ 177 (198)
..|.+|...|.-- --..||+.||..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4699999877521 23479999999997543
No 109
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=33.97 E-value=3.4 Score=25.75 Aligned_cols=46 Identities=17% Similarity=0.418 Sum_probs=24.9
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCCcccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPICNRSI 191 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr~~i 191 (198)
++..|.||...-.-..--.|...|+..|+..-+.... .||.|....
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 3457888876421111113566688888764322211 677776544
No 110
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.85 E-value=16 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=21.6
Q ss_pred CcccccccccCcce----EEcCCCCcchHhhHHH
Q 036555 147 DWMCCVCMERNKGA----AFIPCGHTFCRVCSRD 176 (198)
Q Consensus 147 ~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~ 176 (198)
...|.+|...|.-- --..||..||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34799999887532 2246999999999743
No 111
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.67 E-value=4.1 Score=25.63 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred cccccccccCcce-----EEc-C--CCCcchHhhHHHHHh
Q 036555 148 WMCCVCMERNKGA-----AFI-P--CGHTFCRVCSRDLWL 179 (198)
Q Consensus 148 ~~C~IC~~~~~~~-----~~l-p--CgH~FC~~Ci~~~~~ 179 (198)
-.||-|....... +.- . |++.||..|...|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 3677776655432 222 2 888899999877654
No 112
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.48 E-value=4 Score=25.99 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=25.9
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCCccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPICNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr~~ 190 (198)
++..|.||...-.-..--.|...||..|+..-+.... .||.|...
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 5668999986432111114666688888864322211 78888654
No 113
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.30 E-value=16 Score=26.24 Aligned_cols=41 Identities=22% Similarity=0.571 Sum_probs=25.0
Q ss_pred CcccccccccCcce----EEcCCCCcchHhhHHHHHhcCCCCCCC
Q 036555 147 DWMCCVCMERNKGA----AFIPCGHTFCRVCSRDLWLNRGTCPIC 187 (198)
Q Consensus 147 ~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~~~~~~~CP~C 187 (198)
...|..|...|.-. --..||..||..|..........|-.|
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 34799998887632 234799999999976543333345444
No 114
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.82 E-value=16 Score=28.57 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCCcccccccccCcce----EEcCCCCcchHhhHHH
Q 036555 145 GSDWMCCVCMERNKGA----AFIPCGHTFCRVCSRD 176 (198)
Q Consensus 145 ~~~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~ 176 (198)
.....|.+|...|.-- --..||+.||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3457999999887521 2246999999999754
No 115
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.09 E-value=7.5 Score=27.46 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=15.8
Q ss_pred EcCCCCcchHhhHHHHHhcCCCCCCCcccc
Q 036555 162 FIPCGHTFCRVCSRDLWLNRGTCPICNRSI 191 (198)
Q Consensus 162 ~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i 191 (198)
-..||+.|. .-+.....||.|+..-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 347899881 1223335999998653
No 116
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.46 E-value=18 Score=28.57 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCCCcccccccccCcce----EEcCCCCcchHhhHHH
Q 036555 144 EGSDWMCCVCMERNKGA----AFIPCGHTFCRVCSRD 176 (198)
Q Consensus 144 ~~~~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~ 176 (198)
......|.+|...|.-- --..||+.||..|...
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 34456899999877632 2347999999999754
No 117
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.55 E-value=17 Score=27.19 Aligned_cols=29 Identities=21% Similarity=0.686 Sum_probs=21.9
Q ss_pred CCcccccccccCc-----ceEEcCCCCcchHhhH
Q 036555 146 SDWMCCVCMERNK-----GAAFIPCGHTFCRVCS 174 (198)
Q Consensus 146 ~~~~C~IC~~~~~-----~~~~lpCgH~FC~~Ci 174 (198)
+...|.+|...|. ..+-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4568999998763 2245579999999996
No 118
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.40 E-value=11 Score=25.68 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=27.8
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCCccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPICNRS 190 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr~~ 190 (198)
+...|.||...-.-..--.|--.|+..|+..-+.... .||.|...
T Consensus 24 n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 5568999986532111113555699999866443322 89999743
No 119
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.39 E-value=43 Score=24.29 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=28.7
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHH------h----cCC-CCCCCcccc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLW------L----NRG-TCPICNRSI 191 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~------~----~~~-~CP~Cr~~i 191 (198)
.+..|.||.+--.-.---.|-..||..|+...+ . ... .|+.|+..-
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 344699998643311112477789999998642 1 122 999997553
No 120
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.87 E-value=12 Score=25.14 Aligned_cols=45 Identities=16% Similarity=0.467 Sum_probs=33.0
Q ss_pred CCcccccccccCcce-EEcCCCCcchHhhHHHHHhcCCCCCCCccccc
Q 036555 146 SDWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLWLNRGTCPICNRSII 192 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~~~~~~CP~Cr~~i~ 192 (198)
+-+.|..|...+... ....=+..||..|..+. ....|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 457888998887654 33445667999998553 3469999999987
No 121
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.58 E-value=3.3 Score=25.46 Aligned_cols=43 Identities=19% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCcccccccccCcceEEcCCCCcchHhhHHHHHhcCC----CCCCCc
Q 036555 146 SDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRG----TCPICN 188 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~~lpCgH~FC~~Ci~~~~~~~~----~CP~Cr 188 (198)
++..|.||...-.-..--.|...||..|+..-+.... .||.|.
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4567999987532111124666688888864332211 677664
No 122
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.69 E-value=35 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=10.8
Q ss_pred ccccccccCcceEEcCCCCcchHhh
Q 036555 149 MCCVCMERNKGAAFIPCGHTFCRVC 173 (198)
Q Consensus 149 ~C~IC~~~~~~~~~lpCgH~FC~~C 173 (198)
.|..|.......++..-+..||..|
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~C 41 (79)
T 1x62_A 17 MCDKCGTGIVGVFVKLRDRHRHPEC 41 (79)
T ss_dssp CCSSSCCCCCSSCEECSSCEECTTT
T ss_pred ccccCCCCccCcEEEECcceeCcCc
Confidence 4555555444333333343444443
No 123
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.46 E-value=79 Score=19.34 Aligned_cols=35 Identities=14% Similarity=0.438 Sum_probs=25.3
Q ss_pred CCcccccccccCcce-EEcCCCCcchHhhHHHHHhc
Q 036555 146 SDWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLWLN 180 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~~~ 180 (198)
+-+.|..|...+... .+..=+..||..|..+.+..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 457888888877654 44556778999999887653
No 124
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.06 E-value=14 Score=31.55 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=0.0
Q ss_pred CcccccccccCcce----EEcCCCCcchHhhHHHH
Q 036555 147 DWMCCVCMERNKGA----AFIPCGHTFCRVCSRDL 177 (198)
Q Consensus 147 ~~~C~IC~~~~~~~----~~lpCgH~FC~~Ci~~~ 177 (198)
...|.+|...|.-. .-..||+.||..|....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 45799999877522 22469999999998654
No 125
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.90 E-value=27 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.472 Sum_probs=13.5
Q ss_pred cccccccccCcce-EEcCCCCcchHhhHHHH
Q 036555 148 WMCCVCMERNKGA-AFIPCGHTFCRVCSRDL 177 (198)
Q Consensus 148 ~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~ 177 (198)
+.|..|...+... .+..=+..||..|..+.
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 4555555444332 22233444555555444
No 126
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.87 E-value=39 Score=29.20 Aligned_cols=44 Identities=20% Similarity=0.459 Sum_probs=28.2
Q ss_pred CcccccccccCcceEEc--CCCCcchHhhHHHHHhc---------CC-CCCCCccc
Q 036555 147 DWMCCVCMERNKGAAFI--PCGHTFCRVCSRDLWLN---------RG-TCPICNRS 190 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~l--pCgH~FC~~Ci~~~~~~---------~~-~CP~Cr~~ 190 (198)
+.-|.+|-+--.--.-- .|...||..||...+.. .+ .|=+|.-.
T Consensus 93 ~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 44688887644211111 67788999999887632 22 78888644
No 127
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.87 E-value=12 Score=25.65 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=26.6
Q ss_pred CcccccccccCcceEEcC---CCCcchHhhHHHHHhcC---CCCCCCccc
Q 036555 147 DWMCCVCMERNKGAAFIP---CGHTFCRVCSRDLWLNR---GTCPICNRS 190 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~lp---CgH~FC~~Ci~~~~~~~---~~CP~Cr~~ 190 (198)
...| ||.....+..++- |...|+..|+..-.... -.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3456 8876665544554 55668999985432221 299999743
No 128
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=25.67 E-value=20 Score=24.07 Aligned_cols=48 Identities=21% Similarity=0.543 Sum_probs=29.8
Q ss_pred CCCCcccccccccC--cceEEc---CCCCcchHhhHHHHHhcCC--CCCCCcccc
Q 036555 144 EGSDWMCCVCMERN--KGAAFI---PCGHTFCRVCSRDLWLNRG--TCPICNRSI 191 (198)
Q Consensus 144 ~~~~~~C~IC~~~~--~~~~~l---pCgH~FC~~Ci~~~~~~~~--~CP~Cr~~i 191 (198)
..++..|.||.... ....++ .|.-.|+..|+..-..... .||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34567899998764 222333 3666699999864322222 888886553
No 129
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.98 E-value=48 Score=21.57 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=4.0
Q ss_pred cchHhhHHH
Q 036555 168 TFCRVCSRD 176 (198)
Q Consensus 168 ~FC~~Ci~~ 176 (198)
.||..|..+
T Consensus 73 ~yC~~~y~~ 81 (89)
T 1x64_A 73 LYCETHARA 81 (89)
T ss_dssp EECHHHHHH
T ss_pred EECHHHHHH
Confidence 344444443
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.00 E-value=46 Score=20.47 Aligned_cols=33 Identities=15% Similarity=0.415 Sum_probs=19.5
Q ss_pred CCcccccccccCcce-EEcCCCCcchHhhHHHHH
Q 036555 146 SDWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLW 178 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~ 178 (198)
+-+.|..|...+... ....=+..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 346777777666543 333345567777776553
No 131
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.94 E-value=39 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.591 Sum_probs=26.4
Q ss_pred CcccccccccCcceEEc-----CCCCcchHhhHHHHHhcCC----------CCCCCccc
Q 036555 147 DWMCCVCMERNKGAAFI-----PCGHTFCRVCSRDLWLNRG----------TCPICNRS 190 (198)
Q Consensus 147 ~~~C~IC~~~~~~~~~l-----pCgH~FC~~Ci~~~~~~~~----------~CP~Cr~~ 190 (198)
+.-|.||-+-- .++ .|...||..||...+.... .|=+|.-.
T Consensus 79 ~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 34688887533 233 4667799999987765321 68787643
No 132
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=23.88 E-value=14 Score=23.97 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=28.0
Q ss_pred CCCCcccccccccC--c-ceEEc--CCCCcchHhhHHHHHhcCC--CCCCCccc
Q 036555 144 EGSDWMCCVCMERN--K-GAAFI--PCGHTFCRVCSRDLWLNRG--TCPICNRS 190 (198)
Q Consensus 144 ~~~~~~C~IC~~~~--~-~~~~l--pCgH~FC~~Ci~~~~~~~~--~CP~Cr~~ 190 (198)
..+...|.||...- . +..++ .|.-.|+..|+..-..... .||.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567899998653 1 22222 4667799999864322222 78877543
No 133
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.60 E-value=36 Score=20.95 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCcccccccccCcceE-EcCCCCcchHhhHHHHHh
Q 036555 146 SDWMCCVCMERNKGAA-FIPCGHTFCRVCSRDLWL 179 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~~-~lpCgH~FC~~Ci~~~~~ 179 (198)
+-+.|..|...+.... ...=+..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 4467777776666542 223556688888776654
No 134
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.34 E-value=2.4 Score=28.63 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=4.6
Q ss_pred ccccccccC
Q 036555 149 MCCVCMERN 157 (198)
Q Consensus 149 ~C~IC~~~~ 157 (198)
.||.|...+
T Consensus 4 ~CP~C~~~l 12 (81)
T 2jrp_A 4 TCPVCHHAL 12 (81)
T ss_dssp CCSSSCSCC
T ss_pred CCCCCCCcc
Confidence 455555443
No 135
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.34 E-value=20 Score=24.79 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCcccccccccCcc---eEEcCCCCcchHhhHHHHH
Q 036555 146 SDWMCCVCMERNKG---AAFIPCGHTFCRVCSRDLW 178 (198)
Q Consensus 146 ~~~~C~IC~~~~~~---~~~lpCgH~FC~~Ci~~~~ 178 (198)
++..|.||.+.-.. ..-..|...||..|+....
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 56689999765432 1223588889999986544
No 136
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.65 E-value=39 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.535 Sum_probs=14.2
Q ss_pred cccccccccCcce-EEcCCCCcchHhhHHHH
Q 036555 148 WMCCVCMERNKGA-AFIPCGHTFCRVCSRDL 177 (198)
Q Consensus 148 ~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~ 177 (198)
+.|..|...+... .+..=+..||..|..+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 4555555544432 22233444566665443
No 137
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.78 E-value=47 Score=20.30 Aligned_cols=33 Identities=21% Similarity=0.526 Sum_probs=20.8
Q ss_pred CCcccccccccCcce-EEcCCCCcchHhhHHHHH
Q 036555 146 SDWMCCVCMERNKGA-AFIPCGHTFCRVCSRDLW 178 (198)
Q Consensus 146 ~~~~C~IC~~~~~~~-~~lpCgH~FC~~Ci~~~~ 178 (198)
+-+.|..|...+... ....=+..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 446777887766543 333445668888876654
No 138
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.31 E-value=9.1 Score=25.82 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=28.0
Q ss_pred CcccccccccCc---ceEEc--CCCCcchHhhHHHHHh------cC--CCCCCCccccc
Q 036555 147 DWMCCVCMERNK---GAAFI--PCGHTFCRVCSRDLWL------NR--GTCPICNRSII 192 (198)
Q Consensus 147 ~~~C~IC~~~~~---~~~~l--pCgH~FC~~Ci~~~~~------~~--~~CP~Cr~~i~ 192 (198)
...|.||...-. +.+++ .|...||..|+..-+. .. =.|+.|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 457999987643 23332 3666788888864332 11 17888866543
No 139
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.20 E-value=45 Score=20.90 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=20.0
Q ss_pred CCcccccccccCc-c-eEEcCCCCcchHhhHHHHHh
Q 036555 146 SDWMCCVCMERNK-G-AAFIPCGHTFCRVCSRDLWL 179 (198)
Q Consensus 146 ~~~~C~IC~~~~~-~-~~~lpCgH~FC~~Ci~~~~~ 179 (198)
+-+.|..|...+. . .....=+..||..|......
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 3467777777665 2 23333445677777766543
No 140
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=20.18 E-value=44 Score=25.24 Aligned_cols=25 Identities=32% Similarity=0.858 Sum_probs=19.2
Q ss_pred ccchhhhHHHHHHHhccccc--cc----ccC
Q 036555 4 IERRRRVWQNLKQRLRLKGM--GC----CGS 28 (198)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~--~c----c~~ 28 (198)
++++.++-.-|+++|+|.|. || ||+
T Consensus 19 ~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGA 49 (164)
T 3nvw_A 19 ADPETTLLAYLRRKLGLRGTKLGCGEGGCGA 49 (164)
T ss_dssp CCTTCBHHHHHHHTSCCTTSCCSCSSSSSCT
T ss_pred CCCCCCHHHHHHHHcCCCCcCCCcCCCCCCC
Confidence 44556667789999999887 77 776
Done!