BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036556
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 147/237 (62%), Gaps = 1/237 (0%)
Query: 21 PSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTN 80
P H HPLD LT EF +++IV YP S + L F Y+GL++ K VL + + T +
Sbjct: 3 PLHVQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVS 62
Query: 81 PPRQAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFV 140
PR+ FVVA I+ QTHEI+++L ++ I S +NGYG+P+L+ +EQ A KL YP F+
Sbjct: 63 IPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFI 122
Query: 141 ASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
S+ KRGL L E+ C SFT+GWFGEE KN R V++ C+ + T+N +RPI GIT+ D
Sbjct: 123 DSVKKRGLNLSEIVCSSFTMGWFGEE-KNVRTVRLDCFMKESTVNIYVRPITGITIVADL 181
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
D MKI+++ DR VP + TEY+ SK PPF P T QP P F I G +
Sbjct: 182 DLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSV 238
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPLD LT EF +++IV YP S + L F Y+GL++ K VL + + T + PR+
Sbjct: 3 HPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKI 62
Query: 86 FVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISK 145
FVVA I+ QTHEI+++L ++ I S +NGYG+P+L+ +EQ A KL YP F+ S+ K
Sbjct: 63 FVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKK 122
Query: 146 RGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKI 205
RGL L E+ C SFT+GWFGEE KN R V++ C+ + T+N +RPI GIT+ D D MKI
Sbjct: 123 RGLNLSEIVCSSFTMGWFGEE-KNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKI 181
Query: 206 IQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
+++ DR VP + TEY+ SK PPF P T QP P F I G +
Sbjct: 182 VEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSV 233
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L K+ V ++ + PR+A
Sbjct: 94 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 152
Query: 86 FVVARIDHQTHEIIVDLSLQEITS-KKTYNGYGYPLLTEEEQEDANKLASTYPLFVASIS 144
V+ E +VDL ++ S + + +G LL ++ + + F A++
Sbjct: 153 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 210
Query: 145 KRGL-KLEEVECGSFTLGWF-GEE--RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
KRG+ ++V T+G+F G++ +++ R++K++ Y G N PIE + VD
Sbjct: 211 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
++ KI++ + V VP R + P++K +++P+ ++ I G I
Sbjct: 271 EQKKIVKIEEGPVVPVP----MTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMI 323
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L K+ V ++ + PR+A
Sbjct: 94 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 152
Query: 86 FVVARIDHQTHEIIVDLSLQEITS-KKTYNGYGYPLLTEEEQEDANKLASTYPLFVASIS 144
V+ E +VDL ++ S + + +G LL ++ + + F A++
Sbjct: 153 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 210
Query: 145 KRGL-KLEEVECGSFTLGWF-GEE--RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
KRG+ ++V T+G+F G++ +++ R++K++ Y G N PIE + VD
Sbjct: 211 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
++ KI++ + V VP R + P++K +++P+ ++ I G I
Sbjct: 271 EQKKIVKIEEGPVVPVP----MTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMI 323
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L K+ V ++ + PR+A
Sbjct: 89 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 147
Query: 86 FVVARIDHQTHEIIVDLSLQEITS-KKTYNGYGYPLLTEEEQEDANKLASTYPLFVASIS 144
V+ E +VDL ++ S + + +G LL ++ + + F A++
Sbjct: 148 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 205
Query: 145 KRGL-KLEEVECGSFTLGWF-GEE--RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
KRG+ ++V T+G+F G++ +++ R++K++ Y G N PIE + VD
Sbjct: 206 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
++ KI++ + V VP R + P++K +++P+ ++ I G I
Sbjct: 266 EQKKIVKIEEGPVVPVP----MTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMI 318
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L K+ V ++ + PR+A
Sbjct: 89 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 147
Query: 86 FVVARIDHQTHEIIVDLSLQEITS-KKTYNGYGYPLLTEEEQEDANKLASTYPLFVASIS 144
V+ E +VDL ++ S + + +G LL ++ + + F A++
Sbjct: 148 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 205
Query: 145 KRGL-KLEEVECGSFTLGWF-GEE--RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
KRG+ ++V T+G+F G++ +++ R++K++ Y G N PIE + VD
Sbjct: 206 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
++ KI++ + V VP R + P++K +++P+ ++ I G I
Sbjct: 266 EQKKIVKIEEGPVVPVP----MTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMI 318
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L K+ V ++ + PR+A
Sbjct: 94 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 152
Query: 86 FVVARIDHQTHEIIVDLSLQEITS-KKTYNGYGYPLLTEEEQEDANKLASTYPLFVASIS 144
V+ E +VDL ++ S + + +G LL ++ + + F A++
Sbjct: 153 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 210
Query: 145 KRGL-KLEEVECGSFTLGWF-GEE--RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
KRG+ ++V T+G+F G++ +++ R++K++ Y G N PIE + VD
Sbjct: 211 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
++ KI++ + V VP R + P++K +++P+ ++ I G I
Sbjct: 271 EQKKIVKIEEGPVVPVP----MTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMI 323
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L K+ V ++ + PR+A
Sbjct: 89 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 147
Query: 86 FVVARIDHQTHEIIVDLSLQEITS-KKTYNGYGYPLLTEEEQEDANKLASTYPLFVASIS 144
V+ E +VDL ++ S + + +G LL ++ + + F A++
Sbjct: 148 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 205
Query: 145 KRGL-KLEEVECGSFTLGWF-GEE--RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
KRG+ ++V T+G+F G++ +++ R++K++ Y G N PIE + VD
Sbjct: 206 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257
++ KI++ + V VP R + P++K +++P+ ++ I G I
Sbjct: 266 EQKKIVKIEEGPVVPVP----MTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMI 318
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 229 SFTVTGGN 236
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 229 SFTVTGGN 236
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 229 SFTVTGGN 236
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 229 SFTVTGGN 236
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 108 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 167
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 168 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 226
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 227 SFTVTGGN 234
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 229 SFTVTGGN 236
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 229 SFTVTGGN 236
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 131 KLASTYPLFVASISKRGLKLEEVECGSFTLGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248
P++G+ VD ++ + D VP G Y + +L P R + K ++ QP+ P
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVGSQ 256
SF + G
Sbjct: 229 SFTVTGGN 236
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 21/248 (8%)
Query: 21 PSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L E ++ + W + +
Sbjct: 1 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 57
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 58 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 116
Query: 139 FVASISKRGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 117 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 176
Query: 196 MTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDR 247
VD +E K+I I + + ++++ + P RP V QP+
Sbjct: 177 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 232
Query: 248 PSFNIVGS 255
SF + G+
Sbjct: 233 VSFKMTGN 240
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 21/248 (8%)
Query: 21 PSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L E ++ + W + +
Sbjct: 2 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 58
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 59 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 117
Query: 139 FVASISKRGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 118 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 177
Query: 196 MTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDR 247
VD +E K+I I + + ++++ + P RP V QP+
Sbjct: 178 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 233
Query: 248 PSFNIVGS 255
SF + G+
Sbjct: 234 VSFKMTGN 241
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 21/248 (8%)
Query: 21 PSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L E ++ + W + +
Sbjct: 1 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 57
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 58 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 116
Query: 139 FVASISKRGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 117 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 176
Query: 196 MTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDR 247
VD +E K+I I + + ++++ + P RP V QP+
Sbjct: 177 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 232
Query: 248 PSFNIVGS 255
SF + G+
Sbjct: 233 VSFKMTGN 240
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 21/248 (8%)
Query: 21 PSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L E ++ + W + +
Sbjct: 4 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 60
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 61 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 119
Query: 139 FVASISKRGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 120 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 179
Query: 196 MTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDR 247
VD +E K+I I + + ++++ + P RP V QP+
Sbjct: 180 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 235
Query: 248 PSFNIVGS 255
SF + G+
Sbjct: 236 VSFKMTGN 243
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 21/243 (8%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPLD L+ +E + V + + ++F V L E ++ + W + + PPR A
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLA 79
Query: 86 FVVARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASI 143
+ V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 80 YYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQC 138
Query: 144 SKRGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
G+ ++ +V C +T+G+ KR+ + + YY ++ VD
Sbjct: 139 VLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDT 198
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDRPSFNI 252
+E K+I I + + ++++ + P RP V QP+ SF +
Sbjct: 199 EEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKM 254
Query: 253 VGS 255
G+
Sbjct: 255 TGN 257
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 21/243 (8%)
Query: 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQA 85
HPLD L+ +E + V + + ++F V L E ++ + W + + PPR A
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLA 79
Query: 86 FVVARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASI 143
+ V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 80 YYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQC 138
Query: 144 SKRGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDP 200
G+ ++ +V C +T+G+ KR+ + + YY ++ VD
Sbjct: 139 VLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDT 198
Query: 201 DEMKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDRPSFNI 252
+E K+I I + + ++++ + P RP V QP+ SF +
Sbjct: 199 EEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKM 254
Query: 253 VGS 255
G+
Sbjct: 255 TGN 257
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 95/241 (39%), Gaps = 21/241 (8%)
Query: 28 LDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFV 87
LD L+ +E + V + + ++F V L E ++ + W + + PPR A+
Sbjct: 13 LDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLAYY 69
Query: 88 VARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISK 145
V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 70 VILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCVL 128
Query: 146 RGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDE 202
G+ ++ +V C +T+G+ KR+ + + YY ++ VD +E
Sbjct: 129 SGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEE 188
Query: 203 MKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDRPSFNIVG 254
K+I I + + ++++ + P RP V QP+ SF + G
Sbjct: 189 KKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTG 244
Query: 255 S 255
+
Sbjct: 245 N 245
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 95/241 (39%), Gaps = 21/241 (8%)
Query: 28 LDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFV 87
LD L+ +E + V + + ++F V L E ++ + W + + PPR A+
Sbjct: 13 LDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLAYY 69
Query: 88 VARIDHQ--THEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISK 145
V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 70 VILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCVL 128
Query: 146 RGL---KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDE 202
G+ ++ +V C +T+G+ KR+ + + YY ++ VD +E
Sbjct: 129 SGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEE 188
Query: 203 MKIIQFRDRITVLVPKGDGTEYRESKLKP--------PFRPSLKRTTVVQPDRPSFNIVG 254
K+I I + + ++++ + P RP V QP+ SF + G
Sbjct: 189 KKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTG 244
Query: 255 S 255
+
Sbjct: 245 N 245
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 70 LSWLRNETTTNPPRQAFVV----ARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEE 125
L++LR T NPP +V A + I++D L+ I ++KT + YG+ L +
Sbjct: 209 LAFLRRVKTCNPPDAGPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQ 268
Query: 126 QEDANKLASTYPLFVASISKRGLKLEEVECGS 157
+ + Y ++ LE V CG+
Sbjct: 269 RNYMVQTEDQYGFIHEAL------LEAVGCGN 294
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 70 LSWLRNETTTNPPRQAFVV----ARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEE 125
L++LR T NPP +V A + I++D L+ I +KT + YG+ L +
Sbjct: 207 LAFLRRVKTCNPPDAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQ 266
Query: 126 QEDANKLASTYPLFVASISKRGLKLEEVECGS 157
+ + Y ++ LE V CG+
Sbjct: 267 RNYMVQTEDQYSFIHEAL------LEAVGCGN 292
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 70 LSWLRNETTTNPPRQAFVV----ARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEE 125
L++LR T NPP +V A + I++D L+ I +KT + YG+ L +
Sbjct: 204 LAFLRRVKTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQ 263
Query: 126 QEDANKLASTYPLFVASISKRGLKLEEVECGSFTLG 161
+ + Y ++ LE V CG+ G
Sbjct: 264 RNYMVQTEDQYIFIHDAL------LEAVTCGNTEEG 293
>pdb|3DGV|A Chain A, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|B Chain B, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3DGV|C Chain C, Crystal Structure Of Thrombin Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3OSL|A Chain A, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
pdb|3OSL|C Chain C, Structure Of Bovine Thrombin-Activatable Fibrinolysis
Inhibitor In Complex With Tick Carboxypeptidase
Inhibitor
Length = 401
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 24/87 (27%)
Query: 136 YPLFVASISKRGLKLEE---VECGSFTLGW----------------FGEERKNKRIVKMM 176
YPL+V +SK+ + + ++CG W +G+E+ + ++K M
Sbjct: 134 YPLYVLKVSKKEQRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHM 193
Query: 177 CYYLDGTLNADMRPIEGITMTVDPDEM 203
+Y+ +N D G T D M
Sbjct: 194 DFYIMPVVNVD-----GYDYTWKKDRM 215
>pdb|3D4U|A Chain A, Bovine Thrombin-Activatable Fibrinolysis Inhibitor (Tafia)
In Complex With Tick-Derived Carboxypeptidase Inhibitor
Length = 309
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 26/88 (29%)
Query: 136 YPLFVASISKRGLKLEE---VECG---------SFTLGWF--------GEERKNKRIVKM 175
YPL+V +SK+ + + ++CG +F L WF G+E+ + ++K
Sbjct: 42 YPLYVLKVSKKEQRAKNAMWIDCGIHAREWISPAFCL-WFVGSVTYYYGKEKMHTNLLKH 100
Query: 176 MCYYLDGTLNADMRPIEGITMTVDPDEM 203
M +Y+ +N D G T D M
Sbjct: 101 MDFYIMPVVNVD-----GYDYTWKKDRM 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,435,959
Number of Sequences: 62578
Number of extensions: 297235
Number of successful extensions: 689
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 31
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)