Query 036556
Match_columns 257
No_of_seqs 115 out of 582
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 3.6E-63 7.7E-68 488.1 28.6 231 20-257 8-243 (647)
2 PRK14696 tynA tyramine oxidase 100.0 9.8E-63 2.1E-67 489.1 30.3 234 18-257 80-317 (721)
3 PLN02566 amine oxidase (copper 100.0 3.9E-62 8.4E-67 480.7 29.1 242 6-257 2-246 (646)
4 COG3733 TynA Cu2+-containing a 100.0 3.9E-58 8.4E-63 434.1 22.8 233 19-257 23-260 (654)
5 KOG1186 Copper amine oxidase [ 100.0 7.2E-42 1.6E-46 331.5 15.8 241 12-257 14-257 (670)
6 PF02728 Cu_amine_oxidN3: Copp 100.0 2.5E-30 5.4E-35 201.6 9.4 99 119-217 1-101 (101)
7 PF02727 Cu_amine_oxidN2: Copp 99.9 4.1E-24 8.9E-29 162.1 4.1 85 26-112 1-85 (86)
8 PF02728 Cu_amine_oxidN3: Copp 72.8 1 2.2E-05 34.6 -0.3 80 30-112 2-93 (101)
9 PF04270 Strep_his_triad: Stre 63.3 4.2 9.1E-05 28.1 1.2 19 27-45 34-52 (53)
10 COG4765 Uncharacterized protei 53.7 8.5 0.00019 32.2 1.7 35 153-192 111-145 (164)
11 PRK11504 tynA tyramine oxidase 40.8 35 0.00076 35.1 4.1 79 118-209 16-97 (647)
12 TIGR03853 matur_matur probable 39.4 73 0.0016 23.7 4.6 43 29-77 16-58 (77)
13 PF11148 DUF2922: Protein of u 36.3 48 0.001 23.5 3.2 23 25-47 20-42 (69)
14 PF10678 DUF2492: Protein of u 34.2 97 0.0021 23.1 4.6 42 29-76 18-59 (78)
15 PRK11546 zraP zinc resistance 33.1 44 0.00095 27.7 2.9 23 26-48 39-61 (143)
16 PF09923 DUF2155: Uncharacteri 30.3 48 0.001 25.3 2.5 24 169-192 59-83 (90)
17 PF13956 Ibs_toxin: Toxin Ibs, 26.2 38 0.00082 18.3 0.9 15 5-19 2-16 (19)
18 KOG1553 Predicted alpha/beta h 25.1 2.1E+02 0.0045 27.7 6.2 76 83-164 242-324 (517)
19 PF08149 BING4CT: BING4CT (NUC 21.2 71 0.0015 23.9 1.9 60 96-157 20-80 (80)
20 PF12162 STAT1_TAZ2bind: STAT1 20.9 1E+02 0.0022 17.6 2.0 16 118-133 7-22 (23)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=3.6e-63 Score=488.10 Aligned_cols=231 Identities=28% Similarity=0.458 Sum_probs=211.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEe--CCcEEE
Q 036556 20 IPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARI--DHQTHE 97 (257)
Q Consensus 20 ~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~--~~~~~E 97 (257)
+...+.|||||||++||++|++|||++++.+ ..++|++|+|+||+|++|++|++++ .++|+|+|++++ ++.+||
T Consensus 8 ~~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~EP~K~~v~~~~~g~---~~~R~a~v~~~~~~~~~~~e 83 (647)
T PRK11504 8 TAAAVSHPLDPLTAAEIEAAVAILRAEGLLG-ESTRFVSIELAEPPKAEVLAFDPGD---PIDRRAFVVLYDRATGKTYE 83 (647)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhccccC-CceEEEEeeccCCCHHHHHhhhcCC---CCCcEEEEEEEECCCCcEEE
Confidence 3444579999999999999999999998743 5799999999999999999999876 247999999997 688999
Q ss_pred EEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCC-CCceEEecccCCCCCCC-CCCccEEEE
Q 036556 98 IIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLK-LEEVECGSFTLGWFGEE-RKNKRIVKM 175 (257)
Q Consensus 98 ~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~-~~~V~~dpw~~G~~~~~-~~~~Rl~q~ 175 (257)
++|||++++|++|+.+++ +||+++.+|+.+||++|++||.|+++|+||||+ +++|+||||++||++.. +.++|++||
T Consensus 84 ~vVdL~~~~V~~~~~~~~-~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~Rl~~~ 162 (647)
T PRK11504 84 AVVSLTAGEVVSWEEIPG-VQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEERGRRLARG 162 (647)
T ss_pred EEEECCCCEEEEEEECCC-ccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcCCceEEEE
Confidence 999999999999999876 599999999999999999999999999999995 78999999999999875 347999999
Q ss_pred EEEEEc-CCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCCceEEeC
Q 036556 176 MCYYLD-GTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVG 254 (257)
Q Consensus 176 ~~y~r~-~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGpSF~V~G 254 (257)
+||+|. +++|+||||||||+++||+++|||++|+|.|..|+|... +||+++++. ++|+|+|||+|+|||||||+|+|
T Consensus 163 ~~~~r~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v~g 240 (647)
T PRK11504 163 LAFVRADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTVDG 240 (647)
T ss_pred EEEEecCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEEcC
Confidence 999995 889999999999999999999999999999888888776 599999874 79999999999999999999999
Q ss_pred ccC
Q 036556 255 SQI 257 (257)
Q Consensus 255 ~~V 257 (257)
|.|
T Consensus 241 ~~V 243 (647)
T PRK11504 241 NEV 243 (647)
T ss_pred CEE
Confidence 975
No 2
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=9.8e-63 Score=489.10 Aligned_cols=234 Identities=24% Similarity=0.390 Sum_probs=211.8
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEeCCcEEE
Q 036556 18 FLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHE 97 (257)
Q Consensus 18 ~~~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~~~~~~E 97 (257)
+++...+.|||||||++||++|++|||++++.+ .+++|++|+|+||+|++|++|+++..+..|+|+|+|+++.++++||
T Consensus 80 ~~~~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e 158 (721)
T PRK14696 80 TFQVEKRPHPLNALTADEIKQAVEIVKASADFK-PNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIE 158 (721)
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHhccccC-CceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEE
Confidence 677777789999999999999999999987522 4799999999999999999999853223378999999998888999
Q ss_pred EEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCC-CCCceEEecccCCCCCCCC---CCccEE
Q 036556 98 IIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGL-KLEEVECGSFTLGWFGEER---KNKRIV 173 (257)
Q Consensus 98 ~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl-~~~~V~~dpw~~G~~~~~~---~~~Rl~ 173 (257)
++|||++++|++|+.+++ +||+++.+||.+||++|++||+|+++|++||| ++++|+||||++|||+..+ +++|++
T Consensus 159 ~vVdL~~~~v~~~~~~~~-~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~~~Rl~ 237 (721)
T PRK14696 159 AVVDLQNNKVLSWQPIKD-AHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGLKQDARLL 237 (721)
T ss_pred EEEECCCCEEEEEEeCCC-ccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCccccCceEE
Confidence 999999999999999886 59999999999999999999999999999999 6889999999999998753 479999
Q ss_pred EEEEEEEcCCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCCceEEe
Q 036556 174 KMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIV 253 (257)
Q Consensus 174 q~~~y~r~~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGpSF~V~ 253 (257)
||+||++++++|+||||||||+++||+++|||++|+|.+..+.|... +||++++ ++|+++|||+|+|||||||+|+
T Consensus 238 ~~~~y~~~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~-~~Y~~~~---~~r~~lKPl~i~QPeG~sF~v~ 313 (721)
T PRK14696 238 KVVSYLDVGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA-RPYDGRD---RVAPAVKPLQIIEPEGKNYTIT 313 (721)
T ss_pred EEEEEEcCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-cCCCccc---cccCCCCCceeeCCCCCCEEEc
Confidence 99999998999999999999999999999999999998875555543 5999976 4899999999999999999999
Q ss_pred CccC
Q 036556 254 GSQI 257 (257)
Q Consensus 254 G~~V 257 (257)
||+|
T Consensus 314 G~~V 317 (721)
T PRK14696 314 GDTI 317 (721)
T ss_pred CCeE
Confidence 9975
No 3
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=3.9e-62 Score=480.72 Aligned_cols=242 Identities=42% Similarity=0.712 Sum_probs=208.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCC--CCCCCC
Q 036556 6 KTFLFALLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNET--TTNPPR 83 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~--~~~p~R 83 (257)
+..||.+++-+.......+.|||||||++||++|++|||++++...+.++|++|+|+||+|++|++|+++++ .+.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~HPLdpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R 81 (646)
T PLN02566 2 NIPILALVFILQCCFVASLYHPLDPLNPQEINKIRLIVQKSHLGNLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPR 81 (646)
T ss_pred CchHHhHhhhhhcceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCc
Confidence 334454444333222233369999999999999999999998632246999999999999999999998773 234689
Q ss_pred eEEEEEEeCCcEEEEEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCCCCceEEecccCCCC
Q 036556 84 QAFVVARIDHQTHEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWF 163 (257)
Q Consensus 84 ~A~v~~~~~~~~~E~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~~~~V~~dpw~~G~~ 163 (257)
+|+|++..++++||++|||++++|++|+.+++.|||+++.+|+.+||++|++||.|+++|++|||+.++|+||||++||+
T Consensus 82 ~a~v~~~~~~~~~e~vVdl~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~ 161 (646)
T PLN02566 82 RAKVVVRAGGETYELIVDLATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWY 161 (646)
T ss_pred EEEEEEecCCCEEEEEEECCCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccC
Confidence 99988766788999999999999999999987679999999999999999999999999999999878899999999999
Q ss_pred CCCCCCccEEEEEEEEEcCCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeee
Q 036556 164 GEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVV 243 (257)
Q Consensus 164 ~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~ 243 (257)
+.. +++|++||+||+|++++|+||||||||+++||+++|||++|+|.+..|+|...+. ++|+|+|||+|+
T Consensus 162 ~~~-~~~R~~q~~~y~r~~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~ 231 (646)
T PLN02566 162 GET-VTKRALKISCFYRGGSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFP 231 (646)
T ss_pred CCC-CCcEEEEEEEEEcCCCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCcccc
Confidence 884 5799999999999999999999999999999999999999999865677655431 479999999999
Q ss_pred CCC-CCceEEeCccC
Q 036556 244 QPD-RPSFNIVGSQI 257 (257)
Q Consensus 244 QPe-GpSF~V~G~~V 257 (257)
||| ||||+|+||+|
T Consensus 232 QPegG~sF~v~G~~V 246 (646)
T PLN02566 232 CNVSDSGFTILGHRV 246 (646)
T ss_pred CCCCCCcEEEcCCEE
Confidence 999 59999999975
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-58 Score=434.09 Aligned_cols=233 Identities=28% Similarity=0.427 Sum_probs=212.7
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEe--CCcEE
Q 036556 19 LIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARI--DHQTH 96 (257)
Q Consensus 19 ~~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~--~~~~~ 96 (257)
.+....+|||||||++||++|++|||+...+. +++.|..|+|.||+|+++++|.... .++.|.|+++++. ...++
T Consensus 23 vt~k~~shPLdpLt~~Eik~aVEivr~e~~~~-~~~~F~~VtL~eP~K~~v~~f~~~~--~~ieR~a~~~~~~~~~~~i~ 99 (654)
T COG3733 23 VTAKERSHPLDPLTADEIKQAVEIVRAEADFK-KNFAFTEVTLLEPDKQEVLAFRLEN--KPIERKALAVVYELDGKGIY 99 (654)
T ss_pred ccccccCCCCCccCHHHHHHHHHHHHhhcccC-CceeeEEEEecCCchHHHHHHHhcC--CCcchhhhhheeeccCCceE
Confidence 34444579999999999999999999998875 6899999999999999999998643 3688999999987 79999
Q ss_pred EEEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCC-CCCceEEecccCCCCCCC-CCCccEEE
Q 036556 97 EIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGL-KLEEVECGSFTLGWFGEE-RKNKRIVK 174 (257)
Q Consensus 97 E~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl-~~~~V~~dpw~~G~~~~~-~~~~Rl~q 174 (257)
|++|||++.+|.+|+.++.. ||+++.+||..+|+++++||+|++||+|||| |+++|+||||++|+++++ ..++|+++
T Consensus 100 EavV~L~~nkv~~~q~i~~a-~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~~grr~~~ 178 (654)
T COG3733 100 EAVVDLDNNKVLSWQPIKDA-HPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGLKGRRRAL 178 (654)
T ss_pred EEEEEcccceeeeeEecccc-CCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCccccccceeEE
Confidence 99999999999999999875 9999999999999999999999999999999 699999999999999754 56899999
Q ss_pred EEEEEEc-CCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCCceEEe
Q 036556 175 MMCYYLD-GTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIV 253 (257)
Q Consensus 175 ~~~y~r~-~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGpSF~V~ 253 (257)
.+||+|. .++|+|+|||+||+++||++++||++|+|++.+|+|++ ..||.++.+ ++.+.++|||+|.||||.||+++
T Consensus 179 ~~m~yr~~e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~-~~ny~~e~i-~~~~~~~KpiqI~QPeg~sf~i~ 256 (654)
T COG3733 179 KVMWYRDVEDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMK-RANYGRERI-GKALGPVKPIQIIQPEGKSFTIT 256 (654)
T ss_pred EEEEEEecCCCCcccccccceeeEEEcccCeEEEecCCCccccccc-ccCcCHHHh-hhhcCCCCCceeecCCCceEEEe
Confidence 9999996 88999999999999999999999999999999999984 569999876 35677799999999999999999
Q ss_pred CccC
Q 036556 254 GSQI 257 (257)
Q Consensus 254 G~~V 257 (257)
|++|
T Consensus 257 G~~i 260 (654)
T COG3733 257 GDEI 260 (654)
T ss_pred cCEE
Confidence 9875
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.2e-42 Score=331.46 Aligned_cols=241 Identities=37% Similarity=0.547 Sum_probs=214.4
Q ss_pred HHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCC-CCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEE
Q 036556 12 LLLHISFLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKS-THNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVAR 90 (257)
Q Consensus 12 ~~~~~~~~~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~-~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~ 90 (257)
+-..+++++.+.+.|||||||+.||..++.||+..++++ .....|++|.|.||.|+-++.|+.++..++|+|||+++.+
T Consensus 14 ~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA~vVaR 93 (670)
T KOG1186|consen 14 LGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRALVVER 93 (670)
T ss_pred cccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCcceeEEEee
Confidence 444455899999999999999999999999999988653 4567899999999999999999985445578999999999
Q ss_pred eCCcEEEEEEeCCCCcEeEeeec-CCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCCCCceEEecccCCCCCCCCCC
Q 036556 91 IDHQTHEIIVDLSLQEITSKKTY-NGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKN 169 (257)
Q Consensus 91 ~~~~~~E~vVdL~~~~v~~~~~~-~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~~~~V~~dpw~~G~~~~~~~~ 169 (257)
.+++++|++|||+++++++.... .+.+.|+++.+|+.++++.+++.+.|...+.+||++++.|.|.+|+.||||+.+.+
T Consensus 94 ~gg~t~e~~vdlst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~~g 173 (670)
T KOG1186|consen 94 HGGPTPEARVDLSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHPVG 173 (670)
T ss_pred cCCCceEEEEecchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCCcc
Confidence 99999999999999999997765 56679999999999999999999999999999999999999999999999987555
Q ss_pred -ccEEEEEEEEEcCCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCC
Q 036556 170 -KRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRP 248 (257)
Q Consensus 170 -~Rl~q~~~y~r~~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGp 248 (257)
+|+++..||+++...|+|.+||+|+++++|+++|||++++|++.+|+|...+++|+-+... .-|||+..+||||
T Consensus 174 ~~Rlik~~~f~~~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p-----~~~pLq~isPeGP 248 (670)
T KOG1186|consen 174 LERLIKHMAFYRAGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLP-----GFKPLQPISPEGP 248 (670)
T ss_pred hhhhhhhcccccCCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCC-----CCccccccCCCCC
Confidence 8999999999998899999999999999999999999999999899999888888765432 3444777779999
Q ss_pred ceEEeCccC
Q 036556 249 SFNIVGSQI 257 (257)
Q Consensus 249 SF~V~G~~V 257 (257)
||+|+||.|
T Consensus 249 ~FrVeG~~V 257 (670)
T KOG1186|consen 249 GFRVEGHLV 257 (670)
T ss_pred ceEEEEEEE
Confidence 999999865
No 6
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.97 E-value=2.5e-30 Score=201.62 Aligned_cols=99 Identities=35% Similarity=0.609 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHhhChHHHHHHHHcCC-CCCceEEecccCCCCCCCCCCccEEEEEEEEEcCCCCCCcCCCCCcEEE
Q 036556 119 PLLTEEEQEDANKLASTYPLFVASISKRGL-KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMT 197 (257)
Q Consensus 119 p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl-~~~~V~~dpw~~G~~~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~gl~~v 197 (257)
|+++.+||.+++++|++||.|+++|++||| |++.|+||||++|++|..++++|++|++||+|...+|+|||||+||+++
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~~~ 80 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLEPL 80 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceEEE
Confidence 789999999999999999999999999999 5889999999999999855599999999999986559999999999999
Q ss_pred EeCCCcEEEEEeCCc-ceecC
Q 036556 198 VDPDEMKIIQFRDRI-TVLVP 217 (257)
Q Consensus 198 vD~~~~kVi~I~d~~-~~p~p 217 (257)
||++++||++|+|++ .+|+|
T Consensus 81 vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 81 VDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EETTTTEEEEEEEEEEEETT-
T ss_pred EECCCCEEEEEEeCCceeeCC
Confidence 999999999999988 46654
No 7
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.89 E-value=4.1e-24 Score=162.06 Aligned_cols=85 Identities=34% Similarity=0.456 Sum_probs=71.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEeCCcEEEEEEeCCCC
Q 036556 26 HPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQ 105 (257)
Q Consensus 26 HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~~~~~~E~vVdL~~~ 105 (257)
|||||||++||++|+++|++++...+.+++|++|+|+||+|++|++|. .. ++.|+|+|+|+++++++.+|++|||++|
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~~~~~~~F~~I~L~EP~K~~vl~~~-~~-~~~p~R~A~vv~~~~~~~~e~vVdl~~~ 78 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPLAGEKNRFRSIELQEPPKAEVLAFE-RG-GPPPPRRARVVVYDGGQSYEAVVDLTSG 78 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGTTTTSEEEEEEEEE---HHHHHHHH-CC-TTTS-EEEEEEEEETSSSSEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCHHHHhccc-cC-CcCCCeEEEEEEEECCeeeeEEEECcCC
Confidence 999999999999999999999833336899999999999999999993 33 3458999999999976669999999999
Q ss_pred cEeEeee
Q 036556 106 EITSKKT 112 (257)
Q Consensus 106 ~v~~~~~ 112 (257)
+|++|+.
T Consensus 79 ~V~~~~~ 85 (86)
T PF02727_consen 79 KVVSWKE 85 (86)
T ss_dssp ECSCEEE
T ss_pred ccccCcc
Confidence 9999974
No 8
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=72.82 E-value=1 Score=34.63 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcC-CCC-CCCCeEEEEEEeC--C-------cE-EE
Q 036556 30 SLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNE-TTT-NPPRQAFVVARID--H-------QT-HE 97 (257)
Q Consensus 30 pLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~-~~~-~p~R~A~v~~~~~--~-------~~-~E 97 (257)
|+|.+|+.++.+++++..... ..+ ....+.++.+-.+..|--+. +.. .-.|...+.+|.. + -- .+
T Consensus 2 pi~~~E~~~~~~~~~~~p~~~-~al--~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~ 78 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEFQ-AAL--KKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLE 78 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHHH-HHH--HHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEE
T ss_pred CcCHHHHHHHHHHHHHCHHHH-HHH--HHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceE
Confidence 689999999999999542210 000 01123334444444453332 111 2458888887751 1 12 78
Q ss_pred EEEeCCCCcEeEeee
Q 036556 98 IIVDLSLQEITSKKT 112 (257)
Q Consensus 98 ~vVdL~~~~v~~~~~ 112 (257)
++||+.+.+|++|..
T Consensus 79 ~~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 79 PLVDLDSMEVIRIED 93 (101)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEECCCCEEEEEEe
Confidence 999999999999863
No 9
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=63.34 E-value=4.2 Score=28.07 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 036556 27 PLDSLTPSEFTQIRSIVTK 45 (257)
Q Consensus 27 PLdpLs~~EI~~a~~iv~~ 45 (257)
|...||+.|+++|.+.+++
T Consensus 34 ~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 34 PKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EGGGS-HHHHHHHHHHHH-
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 7889999999999998875
No 10
>COG4765 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.71 E-value=8.5 Score=32.23 Aligned_cols=35 Identities=34% Similarity=0.343 Sum_probs=27.4
Q ss_pred eEEecccCCCCCCCCCCccEEEEEEEEEcCCCCCCcCCCC
Q 036556 153 VECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIE 192 (257)
Q Consensus 153 V~~dpw~~G~~~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~ 192 (257)
|.+|-...| ++-+|+.+||||.-++.=|...|||=
T Consensus 111 v~Vde~~ld-----r~~r~if~GWM~asSpgLna~EHPIY 145 (164)
T COG4765 111 VTVDEITLD-----RKIRRIFTGWMFASSPGLNAVEHPIY 145 (164)
T ss_pred EEEEEEecc-----chHhhheeeeeeccCCCcccccchHH
Confidence 667755544 34599999999998888899999963
No 11
>PRK11504 tynA tyramine oxidase; Provisional
Probab=40.84 E-value=35 Score=35.06 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHhhChHHHHHHH--HcCC-CCCceEEecccCCCCCCCCCCccEEEEEEEEEcCCCCCCcCCCCCc
Q 036556 118 YPLLTEEEQEDANKLASTYPLFVASIS--KRGL-KLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGI 194 (257)
Q Consensus 118 ~p~~~~~E~~~~e~~~~~~p~v~~a~~--~~gl-~~~~V~~dpw~~G~~~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~gl 194 (257)
.-|+|.+|+..+.++++++..+-+.+. -.+| ++.+-....|-.|- .-.|...+.+| +...|.+ .
T Consensus 16 LdpLt~~Ei~~a~~iv~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~g~-----~~~R~a~v~~~--~~~~~~~------~ 82 (647)
T PRK11504 16 LDPLTAAEIEAAVAILRAEGLLGESTRFVSIELAEPPKAEVLAFDPGD-----PIDRRAFVVLY--DRATGKT------Y 82 (647)
T ss_pred CCCCCHHHHHHHHHHHHhccccCCceEEEEeeccCCCHHHHHhhhcCC-----CCCcEEEEEEE--ECCCCcE------E
Confidence 457999999999999998865433332 1344 34443345565441 12566664444 4333322 6
Q ss_pred EEEEeCCCcEEEEEe
Q 036556 195 TMTVDPDEMKIIQFR 209 (257)
Q Consensus 195 ~~vvD~~~~kVi~I~ 209 (257)
.++||+.+++|++..
T Consensus 83 e~vVdL~~~~V~~~~ 97 (647)
T PRK11504 83 EAVVSLTAGEVVSWE 97 (647)
T ss_pred EEEEECCCCEEEEEE
Confidence 789999999998865
No 12
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=39.37 E-value=73 Score=23.67 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCC
Q 036556 29 DSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNET 77 (257)
Q Consensus 29 dpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~ 77 (257)
.|+|.+|++++ +.+.+. .+.||++-..++=.-+++++||...+
T Consensus 16 ~~~t~~~L~~~---i~~~FG---~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 16 EPYTRESLKAA---IEQKFG---EDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred CCcCHHHHHHH---HHHHhC---CCceEeecccccCCHHHHHHHHHHCC
Confidence 36788888877 345553 35799999999999999999997763
No 13
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=36.28 E-value=48 Score=23.53 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC
Q 036556 25 YHPLDSLTPSEFTQIRSIVTKAY 47 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~~~ 47 (257)
.+|-++||.+|+++|.+.+-+..
T Consensus 20 ~~pk~~lt~~~V~~~m~~ii~~~ 42 (69)
T PF11148_consen 20 PNPKEDLTEAEVKAAMQAIIAKK 42 (69)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Confidence 68999999999999999888764
No 14
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=34.21 E-value=97 Score=23.06 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcC
Q 036556 29 DSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNE 76 (257)
Q Consensus 29 dpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~ 76 (257)
.|.|.+|+++| +.+.+. .+.||++-..++=.-+++++||...
T Consensus 18 ~~~t~~~L~~a---i~~~FG---~~arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 18 NPYTKEELKAA---IIEKFG---EDARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred CCcCHHHHHHH---HHHHhC---CCceEEecCCCCCCHHHHHHHHHHc
Confidence 36788888887 455553 3579999999999999999999765
No 15
>PRK11546 zraP zinc resistance protein; Provisional
Probab=33.09 E-value=44 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC
Q 036556 26 HPLDSLTPSEFTQIRSIVTKAYP 48 (257)
Q Consensus 26 HPLdpLs~~EI~~a~~iv~~~~~ 48 (257)
.+..+||+|...++.+|.++.+.
T Consensus 39 ~~~~~LT~EQQa~~q~I~~~f~~ 61 (143)
T PRK11546 39 QNAAPLTTEQQAAWQKIHNDFYA 61 (143)
T ss_pred cccccCCHHHHHHHHHHHHHHHH
Confidence 58899999999999999887653
No 16
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=30.31 E-value=48 Score=25.25 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=20.2
Q ss_pred Ccc-EEEEEEEEEcCCCCCCcCCCC
Q 036556 169 NKR-IVKMMCYYLDGTLNADMRPIE 192 (257)
Q Consensus 169 ~~R-l~q~~~y~r~~~~N~Ya~Pl~ 192 (257)
+.+ +.+++||...|.-|.+-||+=
T Consensus 59 ~~~~iF~GWMfassPal~~~eHP~Y 83 (90)
T PF09923_consen 59 GKREIFSGWMFASSPALNALEHPRY 83 (90)
T ss_pred CccccEeeeEEecCcccccccCccc
Confidence 444 999999998888899999963
No 17
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=26.15 E-value=38 Score=18.28 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHhhc
Q 036556 5 SKTFLFALLLHISFL 19 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (257)
||++|..+.++++|+
T Consensus 2 Mk~vIIlvvLLliSf 16 (19)
T PF13956_consen 2 MKLVIILVVLLLISF 16 (19)
T ss_pred ceehHHHHHHHhccc
Confidence 566666444444443
No 18
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=25.07 E-value=2.1e+02 Score=27.71 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=47.1
Q ss_pred CeEEEEEEe-CCcEEEEEE-eCC--CC-cEeEeeecCCCC--CCCCCHHHHHHHHHHHhhChHHHHHHHHcCCCCCceEE
Q 036556 83 RQAFVVARI-DHQTHEIIV-DLS--LQ-EITSKKTYNGYG--YPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVEC 155 (257)
Q Consensus 83 R~A~v~~~~-~~~~~E~vV-dL~--~~-~v~~~~~~~~~~--~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~~~~V~~ 155 (257)
-+-.|+++. +..+||.-| +-+ .| +|.-|..-...+ --|.-..|..+ .|.-||=||..+|...+++..
T Consensus 242 gq~LvIC~EGNAGFYEvG~m~tP~~lgYsvLGwNhPGFagSTG~P~p~n~~nA------~DaVvQfAI~~Lgf~~edIil 315 (517)
T KOG1553|consen 242 GQDLVICFEGNAGFYEVGVMNTPAQLGYSVLGWNHPGFAGSTGLPYPVNTLNA------ADAVVQFAIQVLGFRQEDIIL 315 (517)
T ss_pred CceEEEEecCCccceEeeeecChHHhCceeeccCCCCccccCCCCCcccchHH------HHHHHHHHHHHcCCCccceEE
Confidence 356677777 477888655 321 12 477776422111 11222334433 345567799999998888999
Q ss_pred ecccCCCCC
Q 036556 156 GSFTLGWFG 164 (257)
Q Consensus 156 dpw~~G~~~ 164 (257)
..|++|-|.
T Consensus 316 ygWSIGGF~ 324 (517)
T KOG1553|consen 316 YGWSIGGFP 324 (517)
T ss_pred EEeecCCch
Confidence 999999775
No 19
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=21.15 E-value=71 Score=23.91 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=38.5
Q ss_pred EEEEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHH-HHHhhChHHHHHHHHcCCCCCceEEec
Q 036556 96 HEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDAN-KLASTYPLFVASISKRGLKLEEVECGS 157 (257)
Q Consensus 96 ~E~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e-~~~~~~p~v~~a~~~~gl~~~~V~~dp 157 (257)
||-+..+...+=.+.-.+||.|-|.++.-|..-.| +--++.-+|+..|.| |+.+.+..||
T Consensus 20 fEDvLgvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeK--ippd~I~LdP 80 (80)
T PF08149_consen 20 FEDVLGVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEK--IPPDMITLDP 80 (80)
T ss_pred hHHeeEeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHh--CCccceecCc
Confidence 55555555444333345788888999887755555 334467788888888 5566676665
No 20
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=20.88 E-value=1e+02 Score=17.63 Aligned_cols=16 Identities=0% Similarity=0.279 Sum_probs=10.6
Q ss_pred CCCCCHHHHHHHHHHH
Q 036556 118 YPLLTEEEQEDANKLA 133 (257)
Q Consensus 118 ~p~~~~~E~~~~e~~~ 133 (257)
--|++.|||.++++.+
T Consensus 7 mmPMSPddy~~l~~~V 22 (23)
T PF12162_consen 7 MMPMSPDDYDELERMV 22 (23)
T ss_dssp ---S-HHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhh
Confidence 4578899999998876
Done!