Query 036556
Match_columns 257
No_of_seqs 115 out of 582
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sxx_A Peroxisomal primary ami 100.0 3.6E-63 1.2E-67 489.6 27.2 235 18-257 15-259 (692)
2 3loy_A Copper amine oxidase; T 100.0 1.3E-61 4.3E-66 475.7 29.3 228 25-257 1-245 (633)
3 1ksi_A Copper amine oxidase; P 100.0 2E-60 6.9E-65 469.5 28.3 232 25-257 2-233 (642)
4 1spu_A Copper amine oxidase; o 100.0 9E-57 3.1E-61 449.6 30.1 234 18-257 86-323 (727)
5 1w6g_A Phenylethylamine oxidas 100.0 2.5E-56 8.7E-61 439.8 22.4 224 22-257 4-236 (646)
6 1w7c_A Lysyl oxidase; AMNE oxi 100.0 8.9E-41 3.1E-45 333.0 22.7 224 22-256 15-299 (747)
7 1tu5_A Copper amine oxidase, l 100.0 1.7E-40 5.7E-45 331.4 19.7 226 23-257 38-313 (746)
8 3pgb_A Putative uncharacterize 99.9 3.1E-24 1.1E-28 214.3 26.0 228 21-257 61-347 (797)
9 3hi7_A Amiloride-sensitive ami 99.9 8.5E-23 2.9E-27 203.3 24.8 221 25-257 10-297 (731)
10 3dp5_A OMCF, cytochrome C fami 43.2 20 0.00068 25.7 3.4 25 24-48 73-99 (99)
11 2cs7_A Pneumococcal histidine 40.2 11 0.00039 25.2 1.4 18 27-44 37-54 (55)
12 2rod_B NOXA, noxaa; MCL-1, apo 33.9 2.4 8.3E-05 23.6 -2.3 20 136-159 4-23 (27)
13 1cc5_A Cytochrome C5; electron 32.8 27 0.00091 24.2 2.5 16 30-45 67-82 (83)
14 3cu4_A Cytochrome C family pro 32.6 39 0.0013 22.8 3.4 24 24-47 59-84 (85)
15 2d0s_A Cytochrome C, cytochrom 31.7 28 0.00096 23.3 2.4 21 25-45 57-77 (79)
16 1a56_A C-551, ferricytochrome 29.8 31 0.001 23.2 2.4 23 24-46 58-80 (81)
17 1ayg_A Cytochrome C-552; elect 27.9 47 0.0016 22.2 3.1 20 25-45 59-78 (80)
18 2exv_A Cytochrome C-551; alpha 26.6 47 0.0016 22.1 2.9 20 25-45 61-80 (82)
19 1gks_A Cytochrome C551; haloph 25.8 40 0.0014 22.7 2.4 22 25-46 55-77 (78)
20 1cch_A Cytochrome C551; electr 22.0 66 0.0022 21.3 2.9 20 25-45 61-80 (82)
21 3ph2_B Cytochrome C6; photosyn 21.5 71 0.0024 21.2 3.0 22 25-46 59-81 (86)
22 1kx2_A Mono-heme C-type cytoch 20.6 45 0.0015 22.6 1.8 17 29-45 63-79 (81)
No 1
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=3.6e-63 Score=489.59 Aligned_cols=235 Identities=21% Similarity=0.351 Sum_probs=213.7
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEe--CCcE
Q 036556 18 FLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARI--DHQT 95 (257)
Q Consensus 18 ~~~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~--~~~~ 95 (257)
+..+....|||||||++||++|++||+++++. .+++|++|+|+||+|++|++|+++. .++|+|+|+|+++. ++++
T Consensus 15 ~~~~~~~~HPLDpLs~~Ei~~a~~iv~~~~~~--~~~~F~~i~L~EP~K~~v~~~~~~~-~~~p~R~a~v~~~~~~~~~~ 91 (692)
T 3sxx_A 15 SAAPARPAHPLDPLSTAEIKAATNTVKSYFAG--KKISFNTVTLREPARKAYIQWKEQG-GPLPPRLAYYVILEAGKPGV 91 (692)
T ss_dssp CCSCCCCSSTTSCCCHHHHHHHHHHHHHHTTT--SCEEEEEEEEECCCHHHHHHHHHSC-CCCCCCEEEEEEEETTCSSE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCC--CCcEEEEEECCCCCHHHHHHHHhcC-CCCCCeEEEEEEEECCCCCE
Confidence 34455567999999999999999999998874 6799999999999999999999874 46789999999998 6899
Q ss_pred EEEEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCC---CCceEEecccCCCCCCCCCCccE
Q 036556 96 HEIIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLK---LEEVECGSFTLGWFGEERKNKRI 172 (257)
Q Consensus 96 ~E~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~---~~~V~~dpw~~G~~~~~~~~~Rl 172 (257)
+|++|||++++|++|+.+++. ||+++.|||.++|++|++||+|+++|++|||+ +++|+||||++||++..+.++|+
T Consensus 92 ~e~vVdl~~~~v~~~~~~~~~-~p~~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~~~~~~V~~dpw~~G~~~~~~~~~Rl 170 (692)
T 3sxx_A 92 KEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRL 170 (692)
T ss_dssp EEEEEETTTTEEEEEEEETTC-CCCCCHHHHHTHHHHHHHCHHHHHHHHHTTCCGGGGGGEEEEEEECCCCTTTTTSSCE
T ss_pred EEEEEECCCCeEEEEEECCCC-cCCcCHHHHHHHHHHHHhCHHHHHHHHHcCCCccccceEEEccccccccCCCCCCceE
Confidence 999999999999999999874 89999999999999999999999999999993 55699999999998875568999
Q ss_pred EEEEEEEEc-CCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcc-eecCCCCCCCCCCCCCC--CCCCC-CCCCCeeeCCCC
Q 036556 173 VKMMCYYLD-GTLNADMRPIEGITMTVDPDEMKIIQFRDRIT-VLVPKGDGTEYRESKLK--PPFRP-SLKRTTVVQPDR 247 (257)
Q Consensus 173 ~q~~~y~r~-~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~-~p~p~~~~~~Y~~~~~~--~~~R~-dlKPl~I~QPeG 247 (257)
+||+||+|. +++|+|||||| |+++||+++|||++|++.+. .|+|+..++||+|+++. +++|+ |+||++|+||||
T Consensus 171 ~~~~~y~r~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~~~p~~~~~~~~Y~p~~~~~~~~~r~~d~kP~~i~QPeG 249 (692)
T 3sxx_A 171 QQALVYYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 249 (692)
T ss_dssp EEEEEEECSSTTSCGGGCBCS-CEEEEETTTTEEEEEECCSSCCCCCCSCCCCCSHHHHHHHHSSCCCCCCCCEEECTTC
T ss_pred EEEEEEEecCCCCCcccccce-eEEEEECCCCEEEEEecCCCCCCCCCCCCCCCChHHccccCCCCCCCCCCceecCCCC
Confidence 999999997 58999999999 99999999999999998765 67777777899998864 47899 999999999999
Q ss_pred CceEEeCccC
Q 036556 248 PSFNIVGSQI 257 (257)
Q Consensus 248 pSF~V~G~~V 257 (257)
|||+|+||.|
T Consensus 250 ~sF~v~g~~V 259 (692)
T 3sxx_A 250 VSFKMTGNVM 259 (692)
T ss_dssp CSCEEETTEE
T ss_pred CcEEEcCCeE
Confidence 9999999975
No 2
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=1.3e-61 Score=475.74 Aligned_cols=228 Identities=20% Similarity=0.239 Sum_probs=204.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcC--C--CCCCCCeEEEEEEeCCcEEEEEE
Q 036556 25 YHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNE--T--TTNPPRQAFVVARIDHQTHEIIV 100 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~--~--~~~p~R~A~v~~~~~~~~~E~vV 100 (257)
.|||||||++||++|++||+++++. .++++|++|+|+||+|++|++||+++ + .++|+|+|+|+++.+++++|++|
T Consensus 1 ~HPLdpLs~~Ei~~a~~iv~~~~~~-~~~~~F~~i~L~EP~K~~v~~~l~~~~~g~~~~~p~R~a~v~~~~~~~~~e~vV 79 (633)
T 3loy_A 1 VHPYDPISDAELQLTSQLIKDATKG-PERPHFIQIDRLDPPKKDMIRYLEAERTGKPLPHISRMTYVYYYIGLDFYKALV 79 (633)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHCCS-SSCEEEEEEEECCCCHHHHHHHHHHHHHTCCCCCCCCEEEEEEEETTEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccC-CCCcEEEEEECCCCCHHHHHHHHhhhhcCCCCCCCCcEEEEEEEeCCCEEEEEE
Confidence 4999999999999999999998874 25799999999999999999998753 1 35778999998877889999999
Q ss_pred eCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCC-CCceEEecccCCCCCCCCCCccEEEEEEEE
Q 036556 101 DLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLK-LEEVECGSFTLGWFGEERKNKRIVKMMCYY 179 (257)
Q Consensus 101 dL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~-~~~V~~dpw~~G~~~~~~~~~Rl~q~~~y~ 179 (257)
||++++|++|+.+++.+||+++.|||.+||++|++||+|+++|+||||+ +++|+||||+||+++ ++++|++||+||+
T Consensus 80 dl~~~~v~~~~~~~~~~~p~~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~~~V~~dpw~~G~d~--~~~~Rl~q~~~y~ 157 (633)
T 3loy_A 80 NVSYGHIITNQKQPKGVIGPLIAEDIQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDS--KEDRMLIQCYMYL 157 (633)
T ss_dssp ETTTTEEEEEEECCTTCCCCCCHHHHHHHHHHHTTSHHHHHHHHTTCCCTTEEEEEEEEECCCSS--CCCSCEEEEEEEE
T ss_pred ECCCCeEEEEEecCCCccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCceEEEeccccccCC--CCCcEEEEEEEEE
Confidence 9999999999999876799999999999999999999999999999994 688999999999865 4689999999999
Q ss_pred E---cCCCCCCcCCCCCcEEEEeCCCcEEEEEeCC--cce-------ecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCC
Q 036556 180 L---DGTLNADMRPIEGITMTVDPDEMKIIQFRDR--ITV-------LVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDR 247 (257)
Q Consensus 180 r---~~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~--~~~-------p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeG 247 (257)
| ++++|+|||||| |+++||+++|||++|++. |.. |+++..++||+|+++. ++|+|+||++|+||||
T Consensus 158 r~~~~~~~N~Ya~Pl~-~~~vvD~~~~~vi~id~~~~g~~~~~~~~~p~~~~~~~~Y~p~~~~-~~r~d~kp~~i~QPeG 235 (633)
T 3loy_A 158 ASAAHPESNHYSLPLK-FSPVFECLTKKFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNG-ETIVPLKPLIVQQPEG 235 (633)
T ss_dssp EETTCTTCCGGGSBCS-EEEEEETTTCCEEEEEECCCSSSSCCCSCCCCCCCCCCCCSTTTSC-CCCCCCCCCEEECTTC
T ss_pred ecCCCCCccccccccc-eEEEEECCCCEEEEEEecCcCcccccccccCCCCCCCCCcChhHcc-cccCCCCCcceeCCCC
Confidence 9 468999999999 889999999999999974 211 3445567899999874 5999999999999999
Q ss_pred CceEEeCccC
Q 036556 248 PSFNIVGSQI 257 (257)
Q Consensus 248 pSF~V~G~~V 257 (257)
|||+|+||+|
T Consensus 236 ~sF~v~g~~V 245 (633)
T 3loy_A 236 PSFNVDGHKI 245 (633)
T ss_dssp CSEEEETTEE
T ss_pred CCEEEcCCcc
Confidence 9999999975
No 3
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=2e-60 Score=469.48 Aligned_cols=232 Identities=46% Similarity=0.811 Sum_probs=212.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEeCCcEEEEEEeCCC
Q 036556 25 YHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSL 104 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~~~~~~E~vVdL~~ 104 (257)
.|||||||++||++|++||+++++.+++.++|++|+|+||+|++|++||+..++++|+|+|+|+++.+++++|++|||++
T Consensus 2 ~HPldpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~l~~~~~~~P~R~A~vv~~~~~~~~E~vV~L~~ 81 (642)
T 1ksi_A 2 QHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEILINLRI 81 (642)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHHSCTTTCCEEEEEEEECCCCHHHHHHHHHCGGGCCCCCEEEEEEEETTEEEEEEEETTT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCHHHHHHHHhhcCCCCCCcEEEEEEEeCCeEEEEEEECCC
Confidence 59999999999999999999998754467899999999999999999985433457899999999999999999999999
Q ss_pred CcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCCCCceEEecccCCCCCCCCCCccEEEEEEEEEcCCC
Q 036556 105 QEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLKLEEVECGSFTLGWFGEERKNKRIVKMMCYYLDGTL 184 (257)
Q Consensus 105 ~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~~~~V~~dpw~~G~~~~~~~~~Rl~q~~~y~r~~~~ 184 (257)
+++++++..+..+||+++.+|+.+++++|++||.|+++|+++||+++.|+||||++|++|.. +++|++|++||++++++
T Consensus 82 ~~v~~~~~~~~~g~p~~~~~E~~~~e~~~~~~p~~~~~~~~~gl~~~~v~~~pw~~g~~~~~-~~~Rl~~~~~~~~~~~~ 160 (642)
T 1ksi_A 82 RSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEE-KNVRTVRLDCFMKESTV 160 (642)
T ss_dssp TEEEEEEECCSSCBCCCCHHHHHHHTTGGGGCHHHHHHHHHTTCCGGGEEEEEECCCCCSCS-CCCCEEEEEEEECSSCS
T ss_pred CcEEEEEeccCCCcCCCCHHHHHHHHHHhhcCHHHHHHHHhcCCCccceEEecccccCCCCC-CCcEEEEEEEEEecCCC
Confidence 99988665554459999999999999999999999999999999988899999999998874 47999999999998889
Q ss_pred CCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCCceEEeCccC
Q 036556 185 NADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIVGSQI 257 (257)
Q Consensus 185 N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGpSF~V~G~~V 257 (257)
|+|+||||||+++||++++||++|+|.+.+++|...+++|+++++.+++|+++||++|+|||||||+|+||+|
T Consensus 161 n~Ya~Pl~Gl~~vvD~~~~~V~~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkP~~i~QPeG~sF~V~G~~V 233 (642)
T 1ksi_A 161 NIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSV 233 (642)
T ss_dssp CGGGSEECSEEEEEETTTTEEEEEEECCCCCCCCCTTCCCCSTTCCSCCCCCCCCBEEECTTCCSCEEETTEE
T ss_pred cccccccCceEEEEECCCCEEEEEEccCCccCCCCCCCCccccccCCCCCCCCCCceecCCCCCCEEEeCcEE
Confidence 9999999999999999999999999988788887777799999876778999999999999999999999975
No 4
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=9e-57 Score=449.56 Aligned_cols=234 Identities=23% Similarity=0.375 Sum_probs=208.1
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEeCCcEEE
Q 036556 18 FLIPSHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHE 97 (257)
Q Consensus 18 ~~~~~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~~~~~~E 97 (257)
+++.....|||||||++||++|++||++++..+ ++++|++|+|+||+|++|++|+...++++|+|+|+|+++.+++++|
T Consensus 86 T~~~~~~~HPLdpLs~~Ei~~a~~il~~~~~~~-~~~~F~~i~L~eP~K~~vl~~~~~~~~~~p~R~A~vv~~~~~~~~e 164 (727)
T 1spu_A 86 TFQVEKRPHPLNALTADEIKQAVEIVKASADFK-PNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADVIMLDGKHIIE 164 (727)
T ss_dssp TEECCSSCCTTCCCCHHHHHHHHHHHHTSTTCC-TTCEEEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEETTEEEE
T ss_pred EEeecccCCCCCcCCHHHHHHHHHHHHhcccCC-CCcEEEEEEecCCCHHHHHhHHhcCCCCCCCeEEEEEEEeCCeEEE
Confidence 345556789999999999999999999886543 5789999999999999999997543345689999999999999999
Q ss_pred EEEeCCCCcEeEeeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCC-CCCceEEecccCCCCCCC---CCCccEE
Q 036556 98 IIVDLSLQEITSKKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGL-KLEEVECGSFTLGWFGEE---RKNKRIV 173 (257)
Q Consensus 98 ~vVdL~~~~v~~~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl-~~~~V~~dpw~~G~~~~~---~~~~Rl~ 173 (257)
++|||++++|++|+.+++ +||+++.+|+.++|++|++||.|+++|+++|| ++++|+||||++||++.. ++++|++
T Consensus 165 ~vV~l~~~~v~~~~~~~~-~~~~~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~~~~v~~dpw~~g~~~~~~~~~~~~R~~ 243 (727)
T 1spu_A 165 AVVDLQNNKLLSWQPIKD-AHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLL 243 (727)
T ss_dssp EEEETTTTEEEEEEEETT-CCCCCCHHHHHHHHHHHHHCHHHHHHHHHTTCSCTTSEEEEEECCCCCTTTTCCCSSSCEE
T ss_pred EEEeCCCCceEEEEeCCC-cCCCCCHHHHHHHHHHHHhCHHHHHHHHHhCCCccceEEEccccccccCCCCCCCCCcEEE
Confidence 999999999999999986 49999999999999999999999999999999 588999999999998743 2479999
Q ss_pred EEEEEEEcCCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCCceEEe
Q 036556 174 KMMCYYLDGTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIV 253 (257)
Q Consensus 174 q~~~y~r~~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGpSF~V~ 253 (257)
|++||++.+++|+|+|||+||++++|++++||++|++.+.+++|.. ..+|++++ ++|+++||++|+|||||||+|+
T Consensus 244 ~~~~~~~~~~~n~Ya~Pl~g~~~vvD~~~~~V~~i~~~~~~~~p~~-~~~y~~~~---~~r~~lkP~~i~QPeG~sF~v~ 319 (727)
T 1spu_A 244 KVISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMT-ARPFDGRD---RVAPAVKPMQIIEPEGKNYTIT 319 (727)
T ss_dssp EEEEEECCSSSCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCCS-CCCSSSTT---EECCCCCCCEEECTTCCSEEEE
T ss_pred EEEEEEECCCCCccccCccceEEEEecccCEEEEEEcCCccccCCC-CCCccccc---cccCCCCCccccCCCCCCEEEC
Confidence 9999996677899999999999999999999999998876667754 34799865 5799999999999999999999
Q ss_pred CccC
Q 036556 254 GSQI 257 (257)
Q Consensus 254 G~~V 257 (257)
||+|
T Consensus 320 g~~V 323 (727)
T 1spu_A 320 GDMI 323 (727)
T ss_dssp TTEE
T ss_pred CCcc
Confidence 9975
No 5
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=2.5e-56 Score=439.83 Aligned_cols=224 Identities=21% Similarity=0.327 Sum_probs=200.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEe--CCcEEEEE
Q 036556 22 SHQYHPLDSLTPSEFTQIRSIVTKAYPKSTHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARI--DHQTHEII 99 (257)
Q Consensus 22 ~~~~HPLdpLs~~EI~~a~~iv~~~~~~~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~--~~~~~E~v 99 (257)
....|||||||++||++|++||+++++.+ ++++|++|+|+||+|++ + .++|+|+|+|++++ ++.++|++
T Consensus 4 ~~~~HPldpLs~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~eP~K~~------g--~~~P~R~A~vv~~~~~~~~~~E~v 74 (646)
T 1w6g_A 4 IQTASPFRLASAGEISEVQGILRTAGLLG-PEKRIAYLGVLDPARGA------G--SEAEDRRFRVFIHDVSGARPQEVT 74 (646)
T ss_dssp ---CCTTCCCCHHHHHHHHHHHHHTTCCC-TTEEEEEEEECCCCSCC------S--SSCCCCEEEEEEEETTSCCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcccCC-CCcEEEEEEccCCchhh------C--CCCCCeEEEEEEEECCCCcEEEEE
Confidence 34579999999999999999999988743 58999999999999999 2 34689999999998 68999999
Q ss_pred EeCCCCcEeE---eeecCCCCCCCCCHHHHHHHHHHHhhChHHHHHHHHcCCC-CCceEEecccCCCCCCC-CCCccEEE
Q 036556 100 VDLSLQEITS---KKTYNGYGYPLLTEEEQEDANKLASTYPLFVASISKRGLK-LEEVECGSFTLGWFGEE-RKNKRIVK 174 (257)
Q Consensus 100 VdL~~~~v~~---~~~~~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~~gl~-~~~V~~dpw~~G~~~~~-~~~~Rl~q 174 (257)
|||++++|++ |+.+++ +||+++.+|+.+++++|+++|.|+++|++|||+ ++.|+| ||++||+++. +.++|++|
T Consensus 75 V~L~~~~v~~~~~~~~~~~-~~~~~~~~E~~~~e~~~~~~p~~~~~i~~~gl~~~~~v~~-pw~~g~~~~~~~~~~Rl~~ 152 (646)
T 1w6g_A 75 VSVTNGTVISAVELDTAAT-GELPVLEEEFEVVEQLLATDERWLKALAARNLDVSKVRVA-PLSAGVFEYAEERGRRILR 152 (646)
T ss_dssp EETTTTEEEEEEECCHHHH-CBCCCCHHHHHHHHHHHTTCHHHHHHHHHTTCCGGGEEEE-EEECCCCSCGGGTTSCEEE
T ss_pred EECCCCeEEecccceeCCC-ccCCCCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCeeEE-eecccccCCccCCCcEEEE
Confidence 9999999998 888886 599999999999999999999999999999995 677999 9999988765 45899999
Q ss_pred EEEEEEc-CCCCCCcCCCCCcEEEEeCCCcEEEEEeCCcceecCCCCCCCCCCCCCCCCCCCCCCCCeeeCCCCCceEEe
Q 036556 175 MMCYYLD-GTLNADMRPIEGITMTVDPDEMKIIQFRDRITVLVPKGDGTEYRESKLKPPFRPSLKRTTVVQPDRPSFNIV 253 (257)
Q Consensus 175 ~~~y~r~-~~~N~Ya~Pl~gl~~vvD~~~~kVi~I~d~~~~p~p~~~~~~Y~~~~~~~~~R~dlKPl~I~QPeGpSF~V~ 253 (257)
++||+|+ +++|+|+|||+||+++||++++||++|++.+..+.|. ..+||+++++.+++|+++|||+|+|||||||+|+
T Consensus 153 ~~~~~r~~~~~n~Ya~Pl~gl~~vvD~~~~~Vi~v~~~~~~~~p~-~~~~y~~~~~~~~~r~~lkP~~i~QPeGpsF~V~ 231 (646)
T 1w6g_A 153 GLAFVQDFPEDSAWAHPVDGLVAYVDVVSKEVTRVIDTGVFPVPA-EHGNYTDPELTGPLRTTQKPISITQPEGPSFTVT 231 (646)
T ss_dssp EEEEECSSTTCCGGGSBCTTEEEEEETTTTEEEEEEECCCCCCCC-SCCCTTCHHHHCSCCCCCCCCCCCCTTCCSCEEE
T ss_pred EEEEEecCCCCCccccccCceEEEEECCCCEEEEEEeCCccCCCC-CCCccchhhcCCCcCCCCCCceecCCCCCceEEe
Confidence 9999997 6889999999999999999999999999987666664 4569999876557899999999999999999999
Q ss_pred -CccC
Q 036556 254 -GSQI 257 (257)
Q Consensus 254 -G~~V 257 (257)
||+|
T Consensus 232 ~G~~V 236 (646)
T 1w6g_A 232 GGNHI 236 (646)
T ss_dssp TTTEE
T ss_pred CCCEE
Confidence 9975
No 6
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=8.9e-41 Score=333.01 Aligned_cols=224 Identities=13% Similarity=0.168 Sum_probs=177.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCC-C--CCe---EEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEeC---
Q 036556 22 SHQYHPLDSLTPSEFTQIRSIVTKAYPKS-T--HNL---TFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARID--- 92 (257)
Q Consensus 22 ~~~~HPLdpLs~~EI~~a~~iv~~~~~~~-~--~~~---~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~~--- 92 (257)
...+|||||||++||++|+++|+++..+. . ..+ .|.+|+|.||+|++||+||+++ +++|+|+|+|+++++
T Consensus 15 ~~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~~Ld~~-g~~P~R~A~vv~~~~~~~ 93 (747)
T 1w7c_A 15 APKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDED-GDLPPRNARTVVYFGEGE 93 (747)
T ss_dssp CSSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHHHHHSC-CCCCCCEEEEEEEECSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHhHhhCC-CCCCCceEEEEEEeCCCC
Confidence 34579999999999999999999883232 1 223 5669999999999999999987 467899999999873
Q ss_pred -CcEEEEEEe-CCCCcEeEeeecC---CC---CCC----CCCHHHHHHHHHHHhhChHHHHHH------HHcC-CCCCce
Q 036556 93 -HQTHEIIVD-LSLQEITSKKTYN---GY---GYP----LLTEEEQEDANKLASTYPLFVASI------SKRG-LKLEEV 153 (257)
Q Consensus 93 -~~~~E~vVd-L~~~~v~~~~~~~---~~---~~p----~~~~~E~~~~e~~~~~~p~v~~a~------~~~g-l~~~~V 153 (257)
+.++|++|| |+++++++++.+. +. .|| +++.+|+.+++++|+ .++++| +++| ++...
T Consensus 94 ~~~~~E~vV~PL~~~~v~~~~~~~~~~~~g~~~~p~~~r~~~~~E~~~~e~~~~---~~~~~~~~~~l~~~~g~~~~~~- 169 (747)
T 1w7c_A 94 EGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLN---KNLNTTIMRDVLEGLIGVPYED- 169 (747)
T ss_dssp SCEEEEEEEESSSCCTTCEEEECCTTCTTCCSEEEGGGCCCCHHHHHHHHHHHH---HHHTSHHHHHHHHHHHSSCGGG-
T ss_pred CCceEEEEEcCCCCCcEEEEEeccccCCCCcccCCcccCCCCHHHHHHHHHHHH---HHHHHHhhccchhhcCCcccce-
Confidence 789999999 9999998888873 32 357 999999999999999 777777 6688 74333
Q ss_pred EEecccCCCC--CCCCCCccEEEEEEEEEcCCCCCCcCCCCCcEEEEeCC-----CcEEEEEeCCc--------------
Q 036556 154 ECGSFTLGWF--GEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPD-----EMKIIQFRDRI-------------- 212 (257)
Q Consensus 154 ~~dpw~~G~~--~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~gl~~vvD~~-----~~kVi~I~d~~-------------- 212 (257)
|++|++|.. +. ++++|++|++||.....+|+|+|||+ |+++||++ ++||++|++.+
T Consensus 170 -l~~w~~~~~~~~~-~~g~R~~~~~~~r~~~~~n~Y~~Plg-~~~~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~ 246 (747)
T 1w7c_A 170 -MGCHSAAPQLHDP-ATGATVDYGTCNINTENDAENLVPTG-FFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQ 246 (747)
T ss_dssp -EEEEECSSCEECT-TTCCEEEEEEEEECCSSSCGGGCEEE-EEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHH
T ss_pred -eeeecccCCcCCC-CCCceEEEEEEEEecCCCCcccccee-eEEEEeCCCCCcccCEEEEEEECCcccCchhhhhhhhc
Confidence 899988754 33 45799999999754333899999995 99999997 68999998553
Q ss_pred ---ce---ecCCCCCCCC---CCCCCC-C--CCCCCCCCCeeeCCCCCceEEeCcc
Q 036556 213 ---TV---LVPKGDGTEY---RESKLK-P--PFRPSLKRTTVVQPDRPSFNIVGSQ 256 (257)
Q Consensus 213 ---~~---p~p~~~~~~Y---~~~~~~-~--~~R~dlKPl~I~QPeGpSF~V~G~~ 256 (257)
.+ ++| ..+| .++... + +.|+++||++|+|||||||+|+||+
T Consensus 247 ~~g~v~~~~~p---~~~~~~~~~~~~~~g~~~~r~~lkp~~i~QPeG~sF~v~g~~ 299 (747)
T 1w7c_A 247 KDDFVTLPKID---VDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPEGRRWAYDGDE 299 (747)
T ss_dssp STTCCCCCCCC---TTCCGGGCCSCCTTSCCCTTTTSCCCCCCCTTCCCCEEETTT
T ss_pred ccCcccccccC---CCCCcccchhhcccCCCCcccCCCCCcccCCCCCCEEEeCCc
Confidence 11 222 2343 333422 2 5799999999999999999999997
No 7
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=1.7e-40 Score=331.36 Aligned_cols=226 Identities=18% Similarity=0.197 Sum_probs=158.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCC---C------CCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEeC-
Q 036556 23 HQYHPLDSLTPSEFTQIRSIVTKAYPK---S------THNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARID- 92 (257)
Q Consensus 23 ~~~HPLdpLs~~EI~~a~~iv~~~~~~---~------~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~~- 92 (257)
..+|||||||++||++++++|+++..+ + .++..| +|+|.||+|++||+||+++ +++|+|+|+|+++++
T Consensus 38 ~~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~-~IeL~~P~K~~vL~~Ld~~-~~~P~R~A~vv~~~~~ 115 (746)
T 1tu5_A 38 DQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVF-SVELQLPPKAAALAHLDRG-SPPPAREALAIVFFGG 115 (746)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEE-EEEEECCCHHHHHHHHHHC-CCCCCCEEEEEEEECS
T ss_pred CCCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEE-EEECCCCCHHHhhhhhcCC-CCCCCccEEEEEEeCC
Confidence 457999999999999999999987521 1 124455 8999999999999999987 567899999999874
Q ss_pred ---CcEEEEEEe-CCCCcEeEeeec--C--CCCCC----CCCHHHHHHHHHHHhhChHHHHHHHHcCC-CCCc--eEEec
Q 036556 93 ---HQTHEIIVD-LSLQEITSKKTY--N--GYGYP----LLTEEEQEDANKLASTYPLFVASISKRGL-KLEE--VECGS 157 (257)
Q Consensus 93 ---~~~~E~vVd-L~~~~v~~~~~~--~--~~~~p----~~~~~E~~~~e~~~~~~p~v~~a~~~~gl-~~~~--V~~dp 157 (257)
+.++|++|| |+++++ ++.+ + +..+| +++.+|+.+++++|+++|.++++|.++|+ +... ++|++
T Consensus 116 ~~~~~v~E~vV~PL~~~~~--~~~~~~~~~~~~~p~~~r~i~~~E~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 193 (746)
T 1tu5_A 116 QPQPNVTELVVGPLPQPSY--MRDVTVERHGGPLPYYRRPVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGGQKLLT 193 (746)
T ss_dssp SSSCEEEEEEEESSSSCCE--EEECHHHHHSSCEEGGGSCCCHHHHHHHHHHHHHTTGGGGHHHHHHHHCTTTTCCCEEE
T ss_pred CCCCceEEEEecCCCCCcE--EEEcccCCCCCcCCcccCCCCHHHHHHHHHHHHHCHHHHHHHHHhcCCCcccCCEEEeC
Confidence 779999999 999986 4444 2 23477 99999999999999999999999999776 3222 88999
Q ss_pred ccCCCCCCCCCCccEEEEEEEEEcCCCCCCcCCCCCcEEEEeCC-----CcEEEEEeCCcc----------------e-e
Q 036556 158 FTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPD-----EMKIIQFRDRIT----------------V-L 215 (257)
Q Consensus 158 w~~G~~~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~gl~~vvD~~-----~~kVi~I~d~~~----------------~-p 215 (257)
|..|..|. ++++|++|++||.....+|+|+|||+ |+++||++ ++||++|++.+. . +
T Consensus 194 ~~~~p~~~-~~g~R~~~~~~~r~~~~~n~Y~~Plg-~~~~vD~~~~D~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~ 271 (746)
T 1tu5_A 194 MNSAPRGV-QSGDRSTWFGIYYNITKGGPYLHPVG-LELLVDHKALDPADWTVQKVFFQGRYYENLAQLEEQFEAGQVNV 271 (746)
T ss_dssp ECCSSCSS-STTCCEEEEEEEECCSSSCGGGSEEE-EEEEEECCSSSGGGCEEEEEEETTEEESSHHHHHHHHHTTCCCC
T ss_pred ccccCCcC-CCCcEEEEEEEEEecCCCCcccccee-eEEEEeCCCCCcccCEEEEEEECCCccCchhhhhcccccCCccc
Confidence 97665443 35799999999754333899999995 99999997 699999995541 0 1
Q ss_pred cCCCCCCCCCCCC--CCCC-CCCCCCCCeeeCCCCCceEEeCccC
Q 036556 216 VPKGDGTEYRESK--LKPP-FRPSLKRTTVVQPDRPSFNIVGSQI 257 (257)
Q Consensus 216 ~p~~~~~~Y~~~~--~~~~-~R~dlKPl~I~QPeGpSF~V~G~~V 257 (257)
++. .++|++++ .+.. .|.++ |++|+|||||||+|+||+|
T Consensus 272 ~~~--p~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v~g~~V 313 (746)
T 1tu5_A 272 VVI--PDDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSVQGNRV 313 (746)
T ss_dssp CCC--CC-----------------------------CEEEETTEE
T ss_pred ccC--ccccCcccccccccccCCCC-CcceeCCCCCCEEecCCcc
Confidence 111 12477765 3322 36666 9999999999999999975
No 8
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=99.93 E-value=3.1e-24 Score=214.26 Aligned_cols=228 Identities=13% Similarity=0.114 Sum_probs=158.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCC---------CCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEe
Q 036556 21 PSHQYHPLDSLTPSEFTQIRSIVTKAYPK---------STHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARI 91 (257)
Q Consensus 21 ~~~~~HPLdpLs~~EI~~a~~iv~~~~~~---------~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~ 91 (257)
.++...+|++||++|++++++.|.++..+ ..++..| .|+|..|+|+++|+||+++ +++|+|.|+|++++
T Consensus 61 ~ap~~~vfadLs~~E~~aV~~~L~~~~~l~Lt~~~~a~~~dN~i~-~iEl~~P~K~~vL~~LD~~-~~~P~R~A~vvi~f 138 (797)
T 3pgb_A 61 KAPKENVWYGLTDDETADVAKWLFGRPELNLTTTENAGEWDNTIA-LIELHRPNKSEAIPYLDGS-GPAPTRHAHVRLNN 138 (797)
T ss_dssp CCSSCCSSSCCCHHHHHHHHHHHHTCTTTCCCCTTTCCSSSEEEE-EEEEECCCHHHHHHHHHC----CCCCEEEEEEEE
T ss_pred cCCCCCcccccCHHHHHHHHHHHhcCCCCCCcccccCCccCCeEE-EEEeeCCCHHHHHHhhcCC-CCCCCeeEEEEEEc
Confidence 44457999999999999999999987533 2467788 8999999999999999998 57899999999998
Q ss_pred C----CcEEEEEEe-CCCCcEeEeeec------------CCCCCCCCCHHHHHHHHHHHhhChHHHHHHHH---cCCCCC
Q 036556 92 D----HQTHEIIVD-LSLQEITSKKTY------------NGYGYPLLTEEEQEDANKLASTYPLFVASISK---RGLKLE 151 (257)
Q Consensus 92 ~----~~~~E~vVd-L~~~~v~~~~~~------------~~~~~p~~~~~E~~~~e~~~~~~p~v~~a~~~---~gl~~~ 151 (257)
+ +.+.|.+|. |+.+.-..++.+ +.. .++++..|...+.++++.-......+-. .|.+.+
T Consensus 139 G~~~~P~v~Ey~VGPLP~p~~t~~~~l~~~y~~~~~g~~~~~-~r~~~~~e~~~l~~~~~~~~~~~~~l~~~t~~~~~~~ 217 (797)
T 3pgb_A 139 RATTDPYFADILVGPLPVSNATTWEPLEFPYTRKTQGQVRNV-EPDGETVYSEWLFKISASIADITLDLWNGTALGLEND 217 (797)
T ss_dssp CSSSSCEEEEEEEESSSCSTTCEEEECCTTCSSCSTTEEECS-CCCTTHHHHTTHHHHHHHTHHHHHHHHSCCCSSSTTC
T ss_pred CCCCCCceEEEEEcCCCCCCcceeEEccccccCCCCCCCCcc-cCcchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Confidence 3 689999999 887632223332 222 4566778888888877754333333322 233223
Q ss_pred c-eEEecccCCCCCCCCCCccEEEEEEEEEcCC---CCCCcCCCCCcEEEEeCCCc-----EEEEEeC------------
Q 036556 152 E-VECGSFTLGWFGEERKNKRIVKMMCYYLDGT---LNADMRPIEGITMTVDPDEM-----KIIQFRD------------ 210 (257)
Q Consensus 152 ~-V~~dpw~~G~~~~~~~~~Rl~q~~~y~r~~~---~N~Ya~Pl~gl~~vvD~~~~-----kVi~I~d------------ 210 (257)
. .+.+.-+.|. ++|+|..| ++|+|+.. +++|.||++ |.+++|+... +|.+|.-
T Consensus 218 ~L~~~~~~P~g~----~sg~r~~W-~~~~~~~~g~~d~~~lhP~g-l~~lvDh~~~Dps~W~v~~v~Yng~~y~s~eel~ 291 (797)
T 3pgb_A 218 TLDIWGIDPLWQ----DDGRIIRW-DMFWNMADDEFDSETLLPLG-LYLKSDVTGRDPSQWKLLGWMYNDIFYETTEEFR 291 (797)
T ss_dssp CEEEEECSSCBC----STTCCEEE-EEEEECCCTTCCCGGGCEEE-EEEEEECCSSCGGGCEEEEEEETTEEESSHHHHH
T ss_pred eEeeeccCCCCc----CCCCEEEe-eeeeccCCCccccceeeccc-eEEEEecCCCChhHcEEEEEEECCEecCCHHHHH
Confidence 3 3344445554 46788888 77788732 579999999 9999999965 9999871
Q ss_pred ----Ccc-eecCCCCCCCCCCCCCC--CCCCCCCCCCeeeCCCCCceEEe--CccC
Q 036556 211 ----RIT-VLVPKGDGTEYRESKLK--PPFRPSLKRTTVVQPDRPSFNIV--GSQI 257 (257)
Q Consensus 211 ----~~~-~p~p~~~~~~Y~~~~~~--~~~R~dlKPl~I~QPeGpSF~V~--G~~V 257 (257)
.|. ..+.......|...... .+.|+++||++|+|||||||+|+ ||.|
T Consensus 292 ~~y~~g~~~~~~~~~~g~ws~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V 347 (797)
T 3pgb_A 292 KAYWSPGFVKLKPNVDGAWAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYV 347 (797)
T ss_dssp HHHTSTTCCCCCCCCCCGGGCCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEE
T ss_pred HHHhCCCeeecCCCCCCcccccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEE
Confidence 222 12221112244321112 35688999999999999999998 5654
No 9
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=99.91 E-value=8.5e-23 Score=203.30 Aligned_cols=221 Identities=16% Similarity=0.148 Sum_probs=155.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCC---------CCCCeEEEEEecCCCChHhHHhhhhcCCCCCCCCeEEEEEEeC---
Q 036556 25 YHPLDSLTPSEFTQIRSIVTKAYPK---------STHNLTFQYVGLEERTKQTVLSWLRNETTTNPPRQAFVVARID--- 92 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~~~~~---------~~~~~~F~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~v~~~~~--- 92 (257)
+-+|++||++|++++++.|.++..+ ..++..| .|+|..|+|+++|+||+++ +++|+|.|+|+++++
T Consensus 10 ~~vf~dLs~~E~~~V~~~L~~~~~l~Lt~~~~a~~~dN~i~-~iEl~~P~K~~vL~~LD~~-~~~P~R~A~vvi~fG~~~ 87 (731)
T 3hi7_A 10 AGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVF-LIEMLLPKKYHVLRFLDKG-ERHPVREARAVIFFGDQE 87 (731)
T ss_dssp GGGGCCCCHHHHHHHHHHHHTCGGGCBCCTTSSCSSSEEEE-EEEEECCCHHHHHHHHHHC-CCCCCCEEEEEEEECSSS
T ss_pred CCccccCCHHHHHHHHHHHhcCCCCCCcccccCCccCCeEE-EEEecCCCchhhhhhhcCC-CCCCCcceEEEEEcCCCC
Confidence 3569999999999999999977422 2467788 8999999999999999998 578999999999983
Q ss_pred -CcEEEEEEe-CCCCcEeEeeecC-CC-C-----CCCCCHHHHHHHHHHHhh-----ChHHHHHHHHcCCC--CCc--eE
Q 036556 93 -HQTHEIIVD-LSLQEITSKKTYN-GY-G-----YPLLTEEEQEDANKLAST-----YPLFVASISKRGLK--LEE--VE 154 (257)
Q Consensus 93 -~~~~E~vVd-L~~~~v~~~~~~~-~~-~-----~p~~~~~E~~~~e~~~~~-----~p~v~~a~~~~gl~--~~~--V~ 154 (257)
+.+.|.+|. |+.+.- ++.+. .. + .++++..|+..+.+.+.+ .+.+++.+- ..++ .++ ..
T Consensus 88 ~P~v~Ey~VGPLP~p~~--~~~l~~~~~~~~p~~~R~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~cL~~ 164 (731)
T 3hi7_A 88 HPNVTEFAVGPLPGPCY--MRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTG-FSFQDCHDRCLAF 164 (731)
T ss_dssp SCEEEEEEEECSSSCCE--EEEESCCTTCCCHHHHSCCCHHHHHHHHHHHHHHTGGGHHHHHHHHS-CBSSSCSSSBEEE
T ss_pred CCeeEEEEEcCCCCCCe--eeecccCCCCcCCcccCCCcHHHHHHHHHHHHHHHhHHHHHHHHHhC-ceecCCCCCEEee
Confidence 679999999 887652 33332 11 1 267888888888877773 334444431 2222 222 33
Q ss_pred EecccCCCCCCCCCCccEEEEEEEEEcCCCCCCcCCCCCcEEEEeCCCc-----EEEEEeC----------------Ccc
Q 036556 155 CGSFTLGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDPDEM-----KIIQFRD----------------RIT 213 (257)
Q Consensus 155 ~dpw~~G~~~~~~~~~Rl~q~~~y~r~~~~N~Ya~Pl~gl~~vvD~~~~-----kVi~I~d----------------~~~ 213 (257)
.+.-|.|. +.|+|..| +.|+|+.+ .+|.||++ |.+++|+... +|.+|.- .|.
T Consensus 165 ~~~~P~~~----~sg~r~~W-~~~~~~~~-g~~l~P~g-l~~~vDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~~g~ 237 (731)
T 3hi7_A 165 TDVAPRGV----ASGQRRSW-LIIQRYVE-GYFLHPTG-LELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGE 237 (731)
T ss_dssp EECSSCSS----STTCCEEE-EEEEECST-TGGGCEEE-EEEEEECCSSSGGGCEEEEEEETTEECSSHHHHHHHHHTTC
T ss_pred ecCCCCcc----CCCCEEEe-hheeccCC-Cceeeccc-eEEEEecCCCChHHcEEEEEEECCEecCCHHHHHHHHhCCC
Confidence 44445554 46899999 67888875 68999999 9999999876 9999971 122
Q ss_pred ---eecC--CCCC-----C----CCCCCCCCC--CCCCCCCCCeeeCCCCCceEEeCccC
Q 036556 214 ---VLVP--KGDG-----T----EYRESKLKP--PFRPSLKRTTVVQPDRPSFNIVGSQI 257 (257)
Q Consensus 214 ---~p~p--~~~~-----~----~Y~~~~~~~--~~R~dlKPl~I~QPeGpSF~V~G~~V 257 (257)
+.++ ..++ . .|..-..++ ..++++||++|+|||||||+|+||+|
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V~g~~V 297 (731)
T 3hi7_A 238 VDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAV 297 (731)
T ss_dssp CCCCCCCCCC----------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEEETTEE
T ss_pred eeEeccCCCCCcccccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEEeCCEE
Confidence 1111 1111 0 121111122 45789999999999999999999975
No 10
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=43.21 E-value=20 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCCCCC--CCCHHHHHHHHHHHHhhCC
Q 036556 24 QYHPLD--SLTPSEFTQIRSIVTKAYP 48 (257)
Q Consensus 24 ~~HPLd--pLs~~EI~~a~~iv~~~~~ 48 (257)
..-++. .||.+||.+.+.+|++.+|
T Consensus 73 ~MP~~~~~~Lsd~ei~~l~~Yi~~~~p 99 (99)
T 3dp5_A 73 GMPAFGEAMIPPADALKIGEYVVASFP 99 (99)
T ss_dssp TSCCCCTTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCc
Confidence 345676 4999999999999998764
No 11
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=40.24 E-value=11 Score=25.15 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 036556 27 PLDSLTPSEFTQIRSIVT 44 (257)
Q Consensus 27 PLdpLs~~EI~~a~~iv~ 44 (257)
|-+.||+.|+++|..++.
T Consensus 37 pk~~Ls~~el~~A~~yl~ 54 (55)
T 2cs7_A 37 PKNELSASELAAAEAFLS 54 (55)
T ss_dssp EGGGSCHHHHHHHHHHHH
T ss_pred EhHHCCHHHHHHHHHHhc
Confidence 778999999999998875
No 12
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=33.88 E-value=2.4 Score=23.60 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=15.0
Q ss_pred ChHHHHHHHHcCCCCCceEEeccc
Q 036556 136 YPLFVASISKRGLKLEEVECGSFT 159 (257)
Q Consensus 136 ~p~v~~a~~~~gl~~~~V~~dpw~ 159 (257)
-|+|.+.++|.| ++|+|. |+
T Consensus 4 ppefaaqlrkig---dkvyct-ws 23 (27)
T 2rod_B 4 PPEFAAQLRKIG---DKVYCT-WS 23 (27)
T ss_dssp CTHHHHHHHHHH---HHHHHH-HH
T ss_pred ChHHHHHHHHhC---CeeEEe-ec
Confidence 478888888876 677775 65
No 13
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=32.79 E-value=27 Score=24.15 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHh
Q 036556 30 SLTPSEFTQIRSIVTK 45 (257)
Q Consensus 30 pLs~~EI~~a~~iv~~ 45 (257)
.||.+||.+++.+|++
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4999999999999985
No 14
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=32.56 E-value=39 Score=22.81 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=19.6
Q ss_pred CCCCCC--CCCHHHHHHHHHHHHhhC
Q 036556 24 QYHPLD--SLTPSEFTQIRSIVTKAY 47 (257)
Q Consensus 24 ~~HPLd--pLs~~EI~~a~~iv~~~~ 47 (257)
..-++. .||.+||.+.+++|++..
T Consensus 59 ~Mp~~~~~~ls~~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 59 GMPAFGEAMIPPADALKIGEYVVASF 84 (85)
T ss_dssp TSCCCCTTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 356676 599999999999998754
No 15
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=31.72 E-value=28 Score=23.28 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=17.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 036556 25 YHPLDSLTPSEFTQIRSIVTK 45 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~ 45 (257)
.-++..||.+||.+.+++|++
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHh
Confidence 345679999999999999875
No 16
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=29.81 E-value=31 Score=23.19 Aligned_cols=23 Identities=4% Similarity=0.099 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhh
Q 036556 24 QYHPLDSLTPSEFTQIRSIVTKA 46 (257)
Q Consensus 24 ~~HPLdpLs~~EI~~a~~iv~~~ 46 (257)
..-++..||.+||.+.+++|+..
T Consensus 58 ~Mp~~~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 58 PMPPNVNVSDADAKALADWILTL 80 (81)
T ss_dssp CBCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC
Confidence 34566889999999999999863
No 17
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=27.86 E-value=47 Score=22.21 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 036556 25 YHPLDSLTPSEFTQIRSIVTK 45 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~ 45 (257)
.-++ .||.+||.+.+++|+.
T Consensus 59 Mp~~-~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 59 MPPQ-NVTDAEAKQLAQWILS 78 (80)
T ss_dssp BCCC-CCCHHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHh
Confidence 3455 8999999999999986
No 18
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=26.61 E-value=47 Score=22.07 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 036556 25 YHPLDSLTPSEFTQIRSIVTK 45 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~ 45 (257)
.-++ .||.+||.+.+++|++
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 61 MPPN-AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp BCCC-CCCHHHHHHHHHHHHT
T ss_pred CCCC-CCCHHHHHHHHHHHHh
Confidence 4456 8999999999999985
No 19
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=25.84 E-value=40 Score=22.66 Aligned_cols=22 Identities=0% Similarity=0.010 Sum_probs=17.6
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhh
Q 036556 25 YHPL-DSLTPSEFTQIRSIVTKA 46 (257)
Q Consensus 25 ~HPL-dpLs~~EI~~a~~iv~~~ 46 (257)
.-++ +.||.+||.+.+++|+++
T Consensus 55 Mp~~~~~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 55 MPAYDGRADREDLVKAIEYMLST 77 (78)
T ss_dssp BCCCBTTBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhh
Confidence 3455 469999999999999863
No 20
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=22.01 E-value=66 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q 036556 25 YHPLDSLTPSEFTQIRSIVTK 45 (257)
Q Consensus 25 ~HPLdpLs~~EI~~a~~iv~~ 45 (257)
.-++ .||.+||.+.+++|+.
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 61 MPPN-PVTEEEAKILAEWVLS 80 (82)
T ss_dssp CCCC-SCCHHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHh
Confidence 3445 8999999999999986
No 21
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=21.49 E-value=71 Score=21.19 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.9
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhh
Q 036556 25 YHPL-DSLTPSEFTQIRSIVTKA 46 (257)
Q Consensus 25 ~HPL-dpLs~~EI~~a~~iv~~~ 46 (257)
.-++ ..||.+||.+.+.+|+..
T Consensus 59 Mp~~~~~ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 59 MPAFKGRLTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCCHHHHHHHHHHHHHh
Confidence 3455 579999999999999864
No 22
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=20.61 E-value=45 Score=22.56 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHh
Q 036556 29 DSLTPSEFTQIRSIVTK 45 (257)
Q Consensus 29 dpLs~~EI~~a~~iv~~ 45 (257)
..||.+||.+++++|++
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37999999999999875
Done!