BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036557
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDAT---FNEGLTLHEFAKMALPEKIME-IVDPSI 58
++S DV+ +G++LLE+ +R D ++ + L ++ K L EK +E +VD +
Sbjct: 210 GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDL 269
Query: 59 LMELMANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVV 107
+G K EE + +I+ +LC+ SP ER +M VV
Sbjct: 270 --------------QGNYKDEE-VEQLIQVALLCTQSSPMERPKMSEVV 303
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDAT---FNEGLTLHEFAKMALPEKIME-IVDPSI 58
++S DV+ +G++LLE+ +R D ++ + L ++ K L EK +E +VD +
Sbjct: 218 GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDL 277
Query: 59 LMELMANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVV 107
+G K EE + +I+ +LC+ SP ER +M VV
Sbjct: 278 --------------QGNYKDEE-VEQLIQVALLCTQSSPMERPKMSEVV 311
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRPTD 29
GS S DV+S+GI+L E+ RR+P D
Sbjct: 178 GSNYSEKCDVFSWGIILWEVITRRKPFD 205
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRPTD 29
GS S DV+S+GI+L E+ RR+P D
Sbjct: 177 GSNYSEKCDVFSWGIILWEVITRRKPFD 204
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 192 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 244
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 245 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 295
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 197 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 249
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 250 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 300
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 199 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 251
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 252 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 302
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 195 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 247
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 248 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 298
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 192 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 244
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 245 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 295
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 195 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 247
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 248 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 298
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 192 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 244
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 245 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 295
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 198 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 250
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 251 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 301
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 196 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 248
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 249 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 299
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 195 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 247
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 248 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 298
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 193 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 245
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 246 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 296
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 210 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 262
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R++ G
Sbjct: 263 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMAG 313
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 190 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 242
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R+ G
Sbjct: 243 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMAG 293
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 223 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 275
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLG 119
+ NN +P G C + I C + +R R + ++ R+ G
Sbjct: 276 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMAG 326
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRR--RPTDATFNEGLTLHEFAKMALPEKIMEIVDPSIL 59
G+ S+ D++S G+ L+EM + R RP A F L ++ P K+ V S+
Sbjct: 180 GTHYSVQSDIWSMGLSLVEMAVGRYPRPPMAIFE----LLDYIVNEPPPKLPSAVF-SLE 234
Query: 60 MELMANNCMIPEDRGRAKTEECL-NAIIK---------TGVLCST 94
+ N C+I RA ++ + +A IK G LCST
Sbjct: 235 FQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEVDFAGWLCST 279
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 4 EASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSI--LME 61
++ + D+YSFG++L E + RR E + LP + DPS + E
Sbjct: 228 QSYIMADMYSFGLILWE--VARRCVSGGIVE--------EYQLPYHDLVPSDPSYEDMRE 277
Query: 62 LMANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRES 116
++ + P R ++ECL + K C +P R+ V L ES
Sbjct: 278 IVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES 332
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 191 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 243
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRES 116
+ NN +P G C + I C + +R R + ++ R++
Sbjct: 244 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN 291
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 3 SEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDPSILMEL 62
S+ S+ DV+SFG++L E+F + + EF +M +K +++ L+EL
Sbjct: 210 SKFSVASDVWSFGVVLYELFTYIEKSKS------PPAEFMRMIGNDKQGQMI-VFHLIEL 262
Query: 63 MANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRES 116
+ NN +P G C + I C + +R R + ++ R++
Sbjct: 263 LKNNGRLPRPDG------CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN 310
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 29/113 (25%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVD------ 55
G+ S+ D++S G+ L+EM + R P + MA+ E + IV+
Sbjct: 196 GTHYSVQSDIWSMGLSLVEMAVGRYPIGSG---------SGSMAIFELLDYIVNEPPPKL 246
Query: 56 PSILMEL----MANNCMIPEDRGRAKTEECL-NAIIK---------TGVLCST 94
PS + L N C+I RA ++ + +A IK G LCST
Sbjct: 247 PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEVDFAGWLCST 299
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRPTDATFNEGLTLHEFAKMALPEKIMEIVDP----- 56
G+ S+ D++S G+ L+EM + R P + + A L + I+ P
Sbjct: 177 GTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEDSRPPMAIFELLDYIVNEPPPKLPSG 236
Query: 57 --SILMELMANNCMIPEDRGRAKTEECL-NAIIK---------TGVLCST 94
S+ + N C+I RA ++ + +A IK G LCST
Sbjct: 237 VFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEVDFAGWLCST 286
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 211 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 264
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 265 CWHPKAEMRPSFSELVSRI 283
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 238 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 291
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 292 CWHPKAEMRPSFSELVSRI 310
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 216 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 269
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 270 CWHPKAEMRPSFSELVSRI 288
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 219 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 272
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 273 CWHPKAEMRPSFSELVSRI 291
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 214 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 267
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 268 CWHPKAEMRPSFSELVSRI 286
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MGSEASMTGDVYSFGILLLEMFIRRRP 27
+G + + + D +SFG+LL EM I + P
Sbjct: 191 LGQKYNHSVDWWSFGVLLYEMLIGQSP 217
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MGSEASMTGDVYSFGILLLEMFIRRRP 27
+G + + + D +SFG+LL EM I + P
Sbjct: 192 LGQKYNHSVDWWSFGVLLYEMLIGQSP 218
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 218 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 271
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 272 CWHPKAEMRPSFSELVSRI 290
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 219 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 272
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 273 CWHPKAEMRPSFSELVSRI 291
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 219 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 272
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 273 CWHPKAEMRPSFSELVSRI 291
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 218 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 271
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 272 CWHPKAEMRPSFSELVSRI 290
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 237 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 290
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 291 CWHPKAEMRPSFSELVSRI 309
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 217 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 270
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 271 CWHPKAEMRPSFSELVSRI 289
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 224 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 277
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 278 CWHPKAEMRPSFSELVSRI 296
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 219 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 272
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 273 CWHPKAEMRPSFSELVSRI 291
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 217 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 270
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 271 CWHPKAEMRPSFSELVSRI 289
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 220 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 273
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 274 CWHPKAEMRPSFSELVSRI 292
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 220 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 273
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 274 CWHPKAEMRPSFSELVSRI 292
>pdb|3KAW|A Chain A, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
pdb|3KAW|B Chain B, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
pdb|3KAW|C Chain C, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
pdb|3KAW|D Chain D, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
pdb|3KAW|E Chain E, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
pdb|3KAW|F Chain F, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
pdb|3KAW|G Chain G, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
pdb|3KAW|H Chain H, Crystal Structure Of Pa2107 Protein From Pseudomonas
Aeruginosa, Northeast Structural Genomics Consortium
Target Par198
Length = 140
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 70 PEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCHTRESFLGRR 121
PE+R R + C+ A + LC TES E+ + G A LC L RR
Sbjct: 33 PEERCRLAAQACIRACERYLALC-TESSREQRQHAGDCADLCRLAALLLERR 83
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 10 DVYSFGILLLEMFIRRRPTDA---TFNEGLTLHEFAKMALPEKIMEIVDPSILMELMANN 66
DV+SFG+LL E+ R P TF+ + L + ++ PE P L E+M
Sbjct: 278 DVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYC-----PDPLYEVML-K 331
Query: 67 CMIPEDRGRAKTEECLNAI 85
C P+ R E ++ I
Sbjct: 332 CWHPKAEMRPSFSELVSRI 350
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 10 DVYSFGILLLEMFIRRRPTDATF-NEGLTLHEFAKMALPE-KIMEIVDPSILMELMANNC 67
DVYSFG++L E+ R + E + L E+A + ++ +IVDP++
Sbjct: 223 DVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNL--------- 273
Query: 68 MIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKL 110
D+ R E L T V C S +R M V+ KL
Sbjct: 274 ---ADKIRP---ESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 10 DVYSFGILLLEMFIRRRPTDATF-NEGLTLHEFAKMALPE-KIMEIVDPSILMELMANNC 67
DVYSFG++L E+ R + E + L E+A + ++ +IVDP++
Sbjct: 223 DVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNL--------- 273
Query: 68 MIPEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKL 110
D+ R E L T V C S +R M V+ KL
Sbjct: 274 ---ADKIRP---ESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310
>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 121
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 44 MALPEKIMEIVDPSILMELMANNCMIPEDRGRAKTEECLNAIIKTGVLCSTESPFERME- 102
M P+ + + D S ELM + +R A+ + + A+IK + +P ER E
Sbjct: 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAI---PNTPLERSEV 57
Query: 103 MRGVVAKLC 111
+R VV + C
Sbjct: 58 IRAVVVRTC 66
>pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|B Chain B, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|C Chain C, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|D Chain D, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|4G9P|A Chain A, Structure Of The Gcpe-Mecpp (Ispg) Complex From Thermus
Thermophilus
Length = 406
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 2 GSEASMTGDVYSFGILLL-------EMFIRRRPTDATFNEGLTLHE-FAKM-------AL 46
G E + GD + G LLL E + R T G E FA+M
Sbjct: 79 GVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGRHKDEHFAEMIRIAMDLGK 138
Query: 47 PEKI---MEIVDPSILMELMANNCMIPEDRGRAKTEECLNAIIKTGV 90
P +I +DP++L ELM N PE ++ E L A++++ V
Sbjct: 139 PVRIGANWGSLDPALLTELMDRNASRPEP--KSAHEVVLEALVESAV 183
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRP 27
G+ S+ D++S G+ L+EM + R P
Sbjct: 204 GTHYSVQSDIWSMGLSLVEMAVGRYP 229
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRP 27
G+ S+ D++S G+ L+EM + R P
Sbjct: 177 GTHYSVQSDIWSMGLSLVEMAVGRYP 202
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRP 27
G+ S+ D++S G+ L+EM + R P
Sbjct: 177 GTHYSVQSDIWSMGLSLVEMAVGRYP 202
>pdb|1V5Y|A Chain A, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Y|B Chain B, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Z|A Chain A, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Z|B Chain B, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
Length = 217
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 35 GLTLHEFAKMALPEKIMEIVDPSILMELMAN 65
G LH A++ + ME +DP +L E+ A+
Sbjct: 147 GNALHTLARLNIDSTTMEGIDPELLSEIFAD 177
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRP 27
G+ S+ D++S G+ L+EM + R P
Sbjct: 177 GTHYSVQSDIWSMGLSLVEMAVGRYP 202
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRP 27
G+ S+ D++S G+ L+EM + R P
Sbjct: 177 GTHYSVQSDIWSMGLSLVEMAVGRYP 202
>pdb|1VFR|A Chain A, The Major Nad(P)h:fmn Oxidoreductase From Vibrio Fischeri
pdb|1VFR|B Chain B, The Major Nad(P)h:fmn Oxidoreductase From Vibrio Fischeri
Length = 218
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 35 GLTLHEFAKMALPEKIMEIVDPSILMELMAN 65
G LH A++ + ME +DP +L E+ A+
Sbjct: 148 GNALHTLARLNIDSTTMEGIDPELLSEIFAD 178
>pdb|3KAV|A Chain A, Crystal Structure Of The Mutant (L80m) Pa2107 Protein From
Pseudomonas Aeruginosa, Northeast Structural Genomics
Consortium Target Par198
pdb|3KAV|B Chain B, Crystal Structure Of The Mutant (L80m) Pa2107 Protein From
Pseudomonas Aeruginosa, Northeast Structural Genomics
Consortium Target Par198
pdb|3KAV|C Chain C, Crystal Structure Of The Mutant (L80m) Pa2107 Protein From
Pseudomonas Aeruginosa, Northeast Structural Genomics
Consortium Target Par198
pdb|3KAV|D Chain D, Crystal Structure Of The Mutant (L80m) Pa2107 Protein From
Pseudomonas Aeruginosa, Northeast Structural Genomics
Consortium Target Par198
Length = 140
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 70 PEDRGRAKTEECLNAIIKTGVLCSTESPFERMEMRGVVAKLCH 112
PE+R R + C+ A + LC TES E+ + G A LC
Sbjct: 33 PEERCRLAAQACIRACERYLALC-TESSREQRQHAGDCADLCR 74
>pdb|3T66|A Chain A, Crystal Structure Of Nickel Abc Transporter From Bacillus
Halodurans
Length = 496
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 34 EGLTLHEFAKMALPEKIMEIVDPSI 58
+G TLH K PE I E+V+P++
Sbjct: 118 DGYTLHITTKEPFPEFISELVNPNV 142
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 2 GSEASMTGDVYSFGILLLEMFIRRRP 27
G+ S+ D++S G+ L+EM + R P
Sbjct: 239 GTHYSVQSDIWSMGLSLVEMAVGRYP 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,210,818
Number of Sequences: 62578
Number of extensions: 111063
Number of successful extensions: 529
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 60
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)