BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036559
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + P RLFKA D+ NL+PKIAPQ IK +IL+GDGG GT+K + F
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G Y K +ID++D+ N + YT EGD L EK Y+ K+V S +GGSI K
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 121 HVNDDKLVNE 130
H + + E
Sbjct: 121 HTKGNVEIKE 130
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + P RLFKA D+ NL+PKIAPQ IK +IL GDGG GT+K + F
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G Y K +ID++D+ N + YT EGD L EK Y+ K+V S +GGSI K
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 121 HVNDDKLVNE 130
H + + E
Sbjct: 121 HTKGNVEIKE 130
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 1 MGVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFA 59
MGV E E S + +LFKA D+ NL+PKIAPQ +K +IL+GDGG GT+K + F
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 60 GGGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEE 119
G Y K +I ++D+ N T Y+ EGD L + EK Y+ K+V + +GG+I K +
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 120 IHVNDDKLVNE 130
H D + E
Sbjct: 121 YHTKGDVEIKE 131
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 1 MGVLRVEKEVPSAVAPSRLFKAL-NDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFA 59
MGV + E S +AP++L+KAL D+ ++PK A +TI+S++I++G+GG GT+K L F
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPK-AVETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 60 GGGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEE 119
GG+ + +I+A+DEANL Y+ G GL EK ++ K+V+ NGGSI K +
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 120 IHVNDDKLVNE 130
I D NE
Sbjct: 120 IETKGDAQPNE 130
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +RLFKA + D NL PK+APQ I S++ ++G+GG GT+K + F
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV + NGGSI K +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 121 HVNDDKLV 128
H D V
Sbjct: 121 HTKGDHEV 128
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +RLFKA + D NL PK+APQ I S++ ++G+GG GT+K + F
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV + +GGSI K +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HVNDDKLV 128
H D V
Sbjct: 121 HTKGDHEV 128
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +RLFKA + D NL+PK+APQ I S++ ++G+GG GT+K + F
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV + +GGSI K +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HVNDDKLV 128
H D V
Sbjct: 121 HTKGDHEV 128
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +RLFKA + D NL PK+APQ I S++ ++G+GG GT+K + F
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV + +GGSI K +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HVNDDKLV 128
H D V
Sbjct: 121 HTKGDHEV 128
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +RLFKA + D NL PK+APQ I S++ ++G+GG GT+K + F
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV + +GGSI K +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HVNDDKLV 128
H D V
Sbjct: 121 HTKGDHEV 128
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +RLFKA + D NL PK+APQ I S++ + G+GG GT+K + F
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV + +GGSI K +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HVNDDKLV 128
H D V
Sbjct: 121 HTKGDHEV 128
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +RLFKA + D L P++APQ I S++ + G+GG GT+K + F
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV +G+GGSI K +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 121 HVNDDKLV 128
H D V
Sbjct: 121 HTKGDHEV 128
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Query: 2 GVLRVEKEVPSAVAPSRLFKAL-NDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S +AP+RL+KAL D+ ++PK A + I+SI+ ++G+GG GT+K L
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPK-AVEAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
GG+ + +I+A+DEANL Y+ G GL EK ++ K+V+ NGGSI K +I
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 121 HVNDDKLVNE 130
D NE
Sbjct: 120 ETKGDAQPNE 129
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 2 GVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E PSAVA ++LFKAL DS +++PK+ Q I+S++I++G+GG GTVK + +
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
GG +IDA+DEA+ Y+ G GL + EK ++ K++ +GGSI K +
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 121 HVNDDKL 127
H D L
Sbjct: 120 HTKGDVL 126
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 1 MGVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFA 59
M + KE S +AP RLFKAL + H +L K P KS +I++GDGGVGTV + F
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 60 GGGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEE 119
G + D +D AN KYT +EGD L EK VY++K+ ++ GGS K
Sbjct: 67 DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKL-EAVGGGSKGKITVT 125
Query: 120 IHVNDDKLVNE 130
H VNE
Sbjct: 126 YHPKPGCTVNE 136
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 2 GVLRVEKEVPSAVAPSRLFKA-LNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E S + +R+FKA + D L+PK+APQ I S++ ++G+GG GT+K + F
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++ K R+D +D N Y+ EG + EK +IKIV + +GG + K +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 121 H 121
H
Sbjct: 121 H 121
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 2 GVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
G+ E E S VAP++L+KAL DS ++PK+ + I+S++I++G+GG GT+K +
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G ++DA+DEANLT Y+ G+GL + EK Y+ KI+ +GGSI K +
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 121 HVNDDKL 127
H D L
Sbjct: 120 HTKGDVL 126
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 2 GVLRVEKEVPSAVAPSRLFKAL-NDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG 60
GV E E+ S VAP+ L+KAL D+ N++PK A + KS++ ++G+GG GT+K + F
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPK-ALDSFKSVENVEGNGGPGTIKKITFLE 59
Query: 61 GGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120
G+ + +I+++DEANL Y+ G L AEK +D K+V NGGS K +
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 121 HVNDDKLVNE 130
D N+
Sbjct: 120 ETKGDAEPNQ 129
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%)
Query: 2 GVLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGG 61
GV E S+VAP++L+KAL + + + I+SI++++G+GGVGT+K + G
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEG 60
Query: 62 GDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIH 121
Q++DA+DEANL Y+ G GL + EK ++ K+V GGSI K + H
Sbjct: 61 DKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFH 120
Query: 122 VNDD 125
D
Sbjct: 121 TKGD 124
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 1 MGVLRVEKEVPSAVAPSRLFKALNDSHNLL-PKIAPQTIKSIDILQGDGGVGTVKLLKFA 59
MGV+ E E S+++ +L++ + + N++ PK P+ I+ + L+GDGG GT+K L F
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 60 GGGDYQQTKQRIDALDEANLTGKYTTYEGDGLL-KLAEKSVYDIKIVDSGNGGSIFKFVE 118
GD+ TKQ ID +D N Y+ YEG L + EK V++ K+V + G I K
Sbjct: 66 --GDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTT 123
Query: 119 EIHVNDDKL 127
+ + D +
Sbjct: 124 KYYTKGDDI 132
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 1 MGVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFA 59
MGV E+ S+V+ ++F+ D +LPK AP KS++I +GDGG GT+K++
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 60 GGGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEE 119
GG RID +++ LT Y+ +GD LL E + +V + +GGSI K
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 120 IHVNDDKLVNE 130
H D +V E
Sbjct: 120 FHTKGDAVVPE 130
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 1 MGVLRVEKEVPSAVAPSRLFKALN-DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFA 59
MG E+ S+V+ ++F + D ++PK A KS+++ +GDGG GTV+++
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 60 GGGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEE 119
G R DA+++ L+ T +GD LL E + +V + +GGSI K
Sbjct: 60 EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 120 IHVNDDKLVNE 130
H D +V E
Sbjct: 120 FHTKGDAVVPE 130
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 25 DSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEAN 78
D ++PK+ P +K + +++GDGGVGT+ + F ++ I DE++
Sbjct: 25 DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESS 78
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 30 LPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGD 89
LP + P + ++I+ GDGGVGT+ F G + K++ +D + K EG
Sbjct: 57 LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEYKEKFILVDNEHRLKKVQXIEG- 114
Query: 90 GLLKLAEKSVYD-IKIVDSGNGGSIFKFVEEIHVNDD 125
G L L D I +V +G + K E HV +
Sbjct: 115 GYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVKPE 151
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 29 LLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGG---GDYQQTKQRIDALDEANLT 80
++PK+ P +K + +++GDGGVGT + F G +YQ ++ I DE + T
Sbjct: 29 VVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAPVNYQ--REVITEYDELSHT 81
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 32 KIAPQTIKSIDILQGDGG-VGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
K +P I+ D+ +GD G VG++ + G+ + K+RI+A++ + EGD
Sbjct: 45 KASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGD- 103
Query: 91 LLKLAEKSVYDIKIV-DSGNGGSIFKFVEEIHVNDDKLVNE 130
L+K + + I++ G GSI + H+ +K+ E
Sbjct: 104 LMKEYKSFLLTIQVTPKPGGPGSIVHW----HLEYEKISEE 140
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 31 PKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
P+ +K ++ GDG VG+V+ + G + + +R++ +D+ + + G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEH 108
Query: 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124
LK KSV + + + G ++ V E + D
Sbjct: 109 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVD 141
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 31 PKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
P+ +K ++ GDG VG+V+ + G + +R++ +D+ + + G+
Sbjct: 48 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 107
Query: 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124
LK KSV + + + G ++ V E + D
Sbjct: 108 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVD 140
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 31 PKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
P+ +K ++ GDG VG+V+ + G + +R++ +D+ + + G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 108
Query: 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124
LK KSV + + + G ++ V E + D
Sbjct: 109 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVD 141
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 31 PKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
P+ +K ++ GDG VG+V+ + G + +R++ +D+ + + G+
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 108
Query: 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124
LK KSV + + + G ++ V E + D
Sbjct: 109 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVD 141
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 31 PKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
P+ +K ++ GDG VG+V+ + G + +R++ +D+ + + G+
Sbjct: 60 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 119
Query: 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124
LK KSV + + + G ++ V E + D
Sbjct: 120 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVD 152
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 31 PKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
P+ +K ++ GDG VG+V+ + G + +R++ +D+ + + G+
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 122
Query: 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124
LK KSV + + + G ++ V E + D
Sbjct: 123 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVD 155
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 31 PKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90
P+ +K ++ GDG VG+V+ + G + +R++ +D+ + + G+
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEH 122
Query: 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124
LK KSV + + + G ++ V E + D
Sbjct: 123 RLK-NYKSVTSVNEFLNQDSGKVYTVVLESYTVD 155
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 8 KEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDI 43
KE+P+++ R F A + NLLPK P+ + + I
Sbjct: 185 KEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 220
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 8 KEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDI 43
KE+P+++ R F A + NLLPK P+ + + I
Sbjct: 154 KEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.137 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,080,248
Number of Sequences: 62578
Number of extensions: 172117
Number of successful extensions: 328
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 44
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)