Query 036559
Match_columns 130
No_of_seqs 128 out of 881
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.5E-38 3.3E-43 226.3 16.3 126 1-127 1-127 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.3E-35 5E-40 208.9 17.1 124 4-128 1-125 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 9.9E-18 2.1E-22 114.4 13.9 113 5-125 2-114 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 1.6E-15 3.5E-20 103.5 17.0 108 3-122 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 5.5E-15 1.2E-19 102.4 13.7 111 7-125 2-117 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.6 2.9E-14 6.3E-19 98.5 13.9 115 6-127 1-115 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 1.4E-13 3E-18 94.2 15.5 113 4-125 2-115 (140)
8 cd07813 COQ10p_like Coenzyme Q 99.6 1.2E-13 2.7E-18 95.4 12.3 110 6-125 1-110 (138)
9 cd08865 SRPBCC_10 Ligand-bindi 99.5 1.1E-12 2.3E-17 89.2 13.9 107 6-122 1-108 (140)
10 cd08860 TcmN_ARO-CYC_like N-te 99.5 2.5E-12 5.4E-17 90.9 14.2 113 5-127 2-117 (146)
11 cd08862 SRPBCC_Smu440-like Lig 99.5 1E-11 2.2E-16 84.8 15.0 107 5-123 2-108 (138)
12 cd07822 SRPBCC_4 Ligand-bindin 99.4 2.8E-11 6.1E-16 82.4 15.2 110 6-123 2-112 (141)
13 cd07820 SRPBCC_3 Ligand-bindin 99.4 1.2E-11 2.7E-16 85.6 12.9 109 6-123 1-112 (137)
14 cd07812 SRPBCC START/RHO_alpha 99.4 2.4E-11 5.3E-16 80.6 13.3 111 7-125 2-113 (141)
15 cd07817 SRPBCC_8 Ligand-bindin 99.4 2.4E-11 5.1E-16 83.1 11.8 108 5-125 1-108 (139)
16 cd07818 SRPBCC_1 Ligand-bindin 99.3 9.5E-11 2.1E-15 81.6 14.1 111 4-124 2-118 (150)
17 cd05018 CoxG Carbon monoxide d 99.3 4.5E-11 9.8E-16 82.0 12.2 113 5-124 2-114 (144)
18 cd07825 SRPBCC_7 Ligand-bindin 99.3 8.7E-11 1.9E-15 81.2 13.2 113 6-125 2-117 (144)
19 PF03364 Polyketide_cyc: Polyk 99.3 8.3E-11 1.8E-15 80.1 12.6 105 12-126 1-107 (130)
20 PRK10724 hypothetical protein; 99.3 8.7E-11 1.9E-15 84.2 13.1 111 3-123 14-124 (158)
21 cd07814 SRPBCC_CalC_Aha1-like 99.3 1.4E-10 3.1E-15 79.1 12.5 111 6-124 2-112 (139)
22 cd07824 SRPBCC_6 Ligand-bindin 99.3 4.8E-10 1E-14 78.4 14.3 109 5-124 2-113 (146)
23 cd07823 SRPBCC_5 Ligand-bindin 99.1 2.2E-09 4.7E-14 75.0 11.9 112 7-124 2-115 (146)
24 COG3427 Carbon monoxide dehydr 98.8 7.9E-08 1.7E-12 67.9 10.9 108 5-121 2-111 (146)
25 PF06240 COXG: Carbon monoxide 98.7 6.1E-07 1.3E-11 62.6 12.9 107 9-124 2-110 (140)
26 COG5637 Predicted integral mem 98.7 2E-07 4.4E-12 67.8 9.0 110 3-125 69-179 (217)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.6 7.6E-07 1.6E-11 63.1 11.4 104 3-123 10-113 (157)
28 cd08898 SRPBCC_CalC_Aha1-like_ 98.6 1.3E-06 2.8E-11 60.0 10.7 106 5-119 2-111 (145)
29 COG2867 Oligoketide cyclase/li 98.6 5.3E-07 1.2E-11 63.5 8.6 112 4-124 2-113 (146)
30 cd08876 START_1 Uncharacterize 98.5 1.6E-05 3.6E-10 57.8 14.9 121 4-126 41-170 (195)
31 cd08894 SRPBCC_CalC_Aha1-like_ 98.5 7E-06 1.5E-10 56.8 12.4 107 6-122 2-110 (139)
32 cd08900 SRPBCC_CalC_Aha1-like_ 98.5 1.3E-05 2.8E-10 55.6 13.7 109 6-120 2-114 (143)
33 cd08895 SRPBCC_CalC_Aha1-like_ 98.4 1.8E-05 3.9E-10 55.1 13.9 110 5-120 1-119 (146)
34 cd08893 SRPBCC_CalC_Aha1-like_ 98.4 1.1E-05 2.4E-10 54.6 12.1 108 5-121 1-109 (136)
35 cd07826 SRPBCC_CalC_Aha1-like_ 98.4 1.7E-05 3.7E-10 55.2 12.9 109 6-121 2-112 (142)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.4 4.7E-05 1E-09 53.0 14.5 106 6-121 2-116 (146)
37 cd08897 SRPBCC_CalC_Aha1-like_ 98.3 1.2E-05 2.6E-10 55.2 10.6 100 5-117 1-104 (133)
38 cd08891 SRPBCC_CalC Ligand-bin 98.2 0.00016 3.5E-09 50.4 13.2 108 6-123 2-118 (149)
39 cd08901 SRPBCC_CalC_Aha1-like_ 98.1 0.00011 2.4E-09 50.7 11.5 100 6-121 2-101 (136)
40 PF08327 AHSA1: Activator of H 97.9 0.0003 6.6E-09 46.8 10.8 96 13-119 1-96 (124)
41 cd08892 SRPBCC_Aha1 Putative h 97.9 0.00065 1.4E-08 46.3 11.7 100 6-122 2-101 (126)
42 COG3832 Uncharacterized conser 97.7 0.0014 3E-08 46.2 11.9 101 3-110 7-107 (149)
43 PTZ00220 Activator of HSP-90 A 97.5 0.00083 1.8E-08 46.4 8.0 92 12-119 1-93 (132)
44 cd08874 START_STARD9-like C-te 97.4 0.013 2.9E-07 43.6 13.9 119 5-126 46-179 (205)
45 cd08873 START_STARD14_15-like 97.4 0.018 3.9E-07 43.9 14.5 115 4-123 77-205 (235)
46 COG4276 Uncharacterized conser 96.9 0.07 1.5E-06 37.5 12.0 113 4-125 2-120 (153)
47 cd08863 SRPBCC_DUF1857 DUF1857 96.8 0.063 1.4E-06 37.9 11.9 73 6-87 2-82 (141)
48 cd08913 START_STARD14-like Lip 96.7 0.13 2.9E-06 39.2 13.5 115 5-122 82-209 (240)
49 cd00177 START Lipid-binding ST 96.5 0.16 3.5E-06 35.9 15.0 122 4-127 39-169 (193)
50 cd08905 START_STARD1-like Chol 96.5 0.12 2.5E-06 38.4 11.9 120 6-127 51-183 (209)
51 cd08914 START_STARD15-like Lip 96.3 0.27 5.9E-06 37.5 13.1 115 4-122 78-205 (236)
52 cd08906 START_STARD3-like Chol 96.2 0.35 7.6E-06 36.0 13.8 119 5-127 50-183 (209)
53 cd08903 START_STARD5-like Lipi 95.8 0.51 1.1E-05 34.9 13.4 119 6-127 48-182 (208)
54 cd08868 START_STARD1_3_like Ch 95.8 0.51 1.1E-05 34.7 13.5 119 6-126 50-181 (208)
55 PF08982 DUF1857: Domain of un 95.6 0.53 1.1E-05 33.4 11.7 70 5-83 1-79 (149)
56 cd08877 START_2 Uncharacterize 94.8 1.2 2.5E-05 32.9 12.3 120 3-125 45-186 (215)
57 cd08871 START_STARD10-like Lip 94.2 1.7 3.6E-05 32.3 14.2 120 5-126 48-176 (222)
58 cd08869 START_RhoGAP C-termina 94.1 1.7 3.6E-05 31.9 14.2 119 5-127 45-172 (197)
59 cd08911 START_STARD7-like Lipi 93.7 2.1 4.6E-05 31.6 13.4 117 5-124 46-178 (207)
60 smart00234 START in StAR and p 92.9 2.6 5.7E-05 30.4 15.1 121 4-126 45-176 (206)
61 cd08870 START_STARD2_7-like Li 92.7 3.1 6.6E-05 30.7 14.9 120 4-125 50-181 (209)
62 PF10698 DUF2505: Protein of u 91.2 4 8.6E-05 28.8 12.7 107 6-122 1-127 (159)
63 cd08867 START_STARD4_5_6-like 90.6 5.3 0.00011 29.2 13.7 119 6-127 48-182 (206)
64 KOG3177 Oligoketide cyclase/li 90.0 2.6 5.7E-05 31.7 7.7 105 9-123 73-181 (227)
65 cd08908 START_STARD12-like C-t 89.1 7.6 0.00017 28.9 13.8 120 4-127 52-179 (204)
66 cd08910 START_STARD2-like Lipi 83.9 15 0.00032 27.1 11.8 118 5-126 50-180 (207)
67 PF01852 START: START domain; 59.5 61 0.0013 23.0 14.7 120 3-126 45-176 (206)
68 PF11687 DUF3284: Domain of un 59.2 52 0.0011 22.1 11.5 101 8-124 3-104 (120)
69 PF11485 DUF3211: Protein of u 58.1 62 0.0014 22.7 11.3 98 5-121 2-101 (136)
70 cd00222 CollagenBindB Collagen 55.0 22 0.00048 26.2 3.9 72 12-90 3-74 (187)
71 cd08904 START_STARD6-like Lipi 48.8 1.1E+02 0.0023 22.7 13.3 118 5-126 47-179 (204)
72 KOG0301 Phospholipase A2-activ 43.9 1.2E+02 0.0026 27.0 7.1 75 4-86 147-228 (745)
73 PF15650 Tox-REase-9: Restrict 38.3 28 0.00062 22.6 2.0 30 51-88 26-55 (89)
74 cd05845 Ig2_L1-CAM_like Second 33.3 1.3E+02 0.0029 19.4 4.6 48 30-81 2-52 (95)
75 KOG2445 Nuclear pore complex c 32.8 1.3E+02 0.0029 24.3 5.3 17 106-122 305-321 (361)
76 cd08909 START_STARD13-like C-t 31.3 2.2E+02 0.0048 21.2 13.6 119 4-127 52-180 (205)
77 cd08872 START_STARD11-like Cer 29.7 2.5E+02 0.0053 21.2 12.4 40 5-46 53-93 (235)
78 PF08473 VGCC_alpha2: Neuronal 28.5 1.5E+02 0.0033 19.4 4.2 22 67-90 34-55 (94)
79 PF07474 G2F: G2F domain; Int 28.3 1.2E+02 0.0025 22.5 4.1 36 54-90 92-127 (192)
80 PF00028 Cadherin: Cadherin do 24.0 1.8E+02 0.0039 17.7 4.9 12 96-107 65-76 (93)
81 cd00255 nidG2 Nidogen, G2 doma 22.7 2E+02 0.0043 21.9 4.5 78 11-90 43-126 (224)
82 PRK02103 malonate decarboxylas 21.7 2E+02 0.0043 19.3 3.9 35 16-54 55-90 (105)
83 TIGR02777 LigD_PE_dom DNA liga 21.4 1.5E+02 0.0033 21.3 3.5 58 51-124 50-110 (156)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.5e-38 Score=226.31 Aligned_cols=126 Identities=37% Similarity=0.628 Sum_probs=119.2
Q ss_pred CccEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcc-cEEEEEEeCCCcceeEEEEEEEEeccce
Q 036559 1 MGVLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVG-TVKLLKFAGGGDYQQTKQRIDALDEANL 79 (130)
Q Consensus 1 m~~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~G-svr~~~~~~g~~~~~~kErl~~~D~~~~ 79 (130)
|++++++.|+++++||+++|++++..++++|+++|++|++++++||||++| |||.|+|.+|++..++|||++.+|++++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK 80 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence 999999999999999999999998788889999999999999999998888 9999999999999999999999999999
Q ss_pred eEEEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 80 TGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 80 ~~~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
+++|+++||+++. .|++|..++++.|.++|+|+++|+++|+++++..
T Consensus 81 ~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~ 127 (151)
T PF00407_consen 81 TITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDV 127 (151)
T ss_dssp EEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSC
T ss_pred EEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCC
Confidence 9999999999887 7999999999999999999999999999999876
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.3e-35 Score=208.87 Aligned_cols=124 Identities=40% Similarity=0.606 Sum_probs=112.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCc-ccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHN-LLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~-~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
++++.+++|+|||++||++++|+.. +.+.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+++|+++|+++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~ 79 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence 4789999999999999999999994 4456666 7999999999999999999999988777899999999999999999
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCcCc
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKLV 128 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~~ 128 (130)
|++++|+++..+|++|+++++|.|.++++|+++|+++|++.++...
T Consensus 80 y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~ 125 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEP 125 (148)
T ss_pred EEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCC
Confidence 9999999865579999999999999888999999999999988643
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.78 E-value=9.9e-18 Score=114.45 Aligned_cols=113 Identities=25% Similarity=0.415 Sum_probs=98.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
.++.+++|++|+++||+++.|+.+ +++|+|. ++++++++++.++|+++.+.+..| ..+++++..+|+.++++.|+
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence 478899999999999999999999 8999996 889998876546899999998765 36899999999987899999
Q ss_pred EEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 85 TYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 85 iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
+.+|+. ++.++.+++++.|.++|+|.++|+.+|++.+.
T Consensus 77 ~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 114 (140)
T cd07821 77 IVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG 114 (140)
T ss_pred ecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC
Confidence 998742 57889999999999887899999999998864
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.72 E-value=1.6e-15 Score=103.48 Aligned_cols=108 Identities=20% Similarity=0.363 Sum_probs=88.7
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 3 VLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 3 ~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
+.+++.++.|+|||++||+++.|+.+ +++|+|+ +.++++.+++ ++|..+.+... | . ..+++++..+|++++.+.
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~-g-~-~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVA-G-R-GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEEC-S-C-SEEEEEEEEEETTTTEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhh-hhhhhhc-eEEEEEcccc-ccceeEEEEec-c-c-cceeEEEEEecCCCcEEE
Confidence 46889999999999999999999999 8999996 8899987633 34555566543 3 1 369999999998899999
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEE
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~ 122 (130)
|++. . .++.++..++++.|.++| |.|+|+.+|++
T Consensus 75 ~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 75 WRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 9996 2 267789999999999976 99999999997
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.66 E-value=5.5e-15 Score=102.38 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=83.2
Q ss_pred EEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCC----cceeEEEEEEEEeccceeEE
Q 036559 7 EKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGG----DYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 7 ~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~----~~~~~kErl~~~D~~~~~~~ 82 (130)
+.++.|++||++||+++.|+++ +|+|+|+ +++++++++.+. +.........+. -...+..++.+.++..+++.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 78 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKFEARVVLELREREEFPRELD 78 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEE
Confidence 5789999999999999999999 8999996 889998876431 211111100000 01234555666666678999
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCC-CCeEEEEEEEEEEcCC
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGN-GGSIFKFVEEIHVNDD 125 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~-g~s~v~w~~~~~~~~~ 125 (130)
|++++|+ ++.|.+++++.|.++ ++|.++|..+|++...
T Consensus 79 ~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~ 117 (144)
T cd08866 79 FEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF 117 (144)
T ss_pred EEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC
Confidence 9998774 678999999999998 6899999999998764
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.62 E-value=2.9e-14 Score=98.50 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=85.5
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTT 85 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (130)
+++++.|++|+++||+++.|+.+ +|+|+|. .+++.++++++...++.+....++..... +....+|++.+++.|..
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW-TSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEEE
Confidence 36889999999999999999999 9999996 45555544322224565565533321222 34456788788999998
Q ss_pred EecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 86 YEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 86 ieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
+++.. ++..+.++++|.|.++++|.|+|..+|+..+..+
T Consensus 77 ~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~ 115 (142)
T cd08861 77 EEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSP 115 (142)
T ss_pred eeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCc
Confidence 87543 4788999999999987889999999999886543
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.4e-13 Score=94.20 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=83.3
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCC-CCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGD-GGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
.+++.++.|+|||++||+++.|+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .++++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSVS 77 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcEE
Confidence 4789999999999999999999999 9999996 8899986543 3333344455543321111111222 223 67899
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
|+..+|. +..++.+++++.|.++ +|.|+|+.+|++...
T Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~ 115 (140)
T cd07819 78 WTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTVP 115 (140)
T ss_pred EEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecCC
Confidence 9998875 4778899999999987 699999999998653
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.56 E-value=1.2e-13 Score=95.38 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=86.1
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTT 85 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (130)
++.++.|++|++.||+++.|+.+ +|+|+|+ +++++++++++ .+....+.+.-++....+..++. +++ .++++++.
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 36789999999999999999999 9999997 88999997664 23444455543332233445544 666 55888988
Q ss_pred EecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 86 YEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 86 ieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
++| +++.+.+++++.|.++|+|.|++.++|++.+.
T Consensus 76 ~~g-----~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~ 110 (138)
T cd07813 76 VDG-----PFKHLEGEWRFKPLGENACKVEFDLEFEFKSR 110 (138)
T ss_pred cCC-----ChhhceeEEEEEECCCCCEEEEEEEEEEECCH
Confidence 877 36789999999999988999999999999753
No 9
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.51 E-value=1.1e-12 Score=89.22 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=84.5
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCC-CCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGD-GGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
++.++.|+||+++||+.+.|+.+ +++|.|. +.+++.+.++ .++|+...+....++....+++++..+|+ ++.+.|.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~ 77 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFR 77 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEE
Confidence 36789999999999999999999 8999997 7788876543 46788888776544332457899998875 4688898
Q ss_pred EEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEE
Q 036559 85 TYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 85 iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~ 122 (130)
..+|. + .+..++.+.|.++ +|.++|+.+|+.
T Consensus 78 ~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 78 GSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred ecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 86552 2 3688999999876 699999999987
No 10
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.48 E-value=2.5e-12 Score=90.87 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=83.8
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCC-CCcccEEE--EEEeCCCcceeEEEEEEEEeccceeE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGD-GGVGTVKL--LKFAGGGDYQQTKQRIDALDEANLTG 81 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~-g~~Gsvr~--~~~~~g~~~~~~kErl~~~D~~~~~~ 81 (130)
..+++|+|++||++||+++.|..+ +|.|+|. ++++++++.+ .+.|+ |. +...+|....+..|+ .+|+..+++
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~-~P~~~~~-~~~~~~l~~~~~~~~~-r~~i~~~~~g~~~~w~s~~--~~~~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIAT-WPDLFSE-YAEAEVLEEDGDTVRF-RLTMHPDANGTVWSWVSER--TLDPVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhh-hhhhccc-eEEEEEEEecCCeEEE-EEEEEeccCCEEEEEEEEE--EecCCCcEE
Confidence 467999999999999999999999 9999996 8899998654 34452 32 222233333444454 378888888
Q ss_pred EEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 82 KYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 82 ~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
.++-.... |+....++++|.|.++| |.|++..+|+..++.+
T Consensus 77 ~~~~~~~~----p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~ 117 (146)
T cd08860 77 RARRVETG----PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAP 117 (146)
T ss_pred EEEEecCC----CcceeeeeEEEEECCCC-EEEEEEEEEEECCCCc
Confidence 77422111 58899999999999765 9999999999876544
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.45 E-value=1e-11 Score=84.84 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=82.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
+++.++.|+||+++||+++.|+.+ +|+|+|+ ++++++..+..++|+...++...+ ..+..++.++++.+ +++++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~~ 75 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTWT 75 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCC-EEEEE
Confidence 578999999999999999999999 8999996 889998754326677665654432 24677888888665 67777
Q ss_pred EEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEc
Q 036559 85 TYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVN 123 (130)
Q Consensus 85 iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~ 123 (130)
... + ...+..++++.+.++++|.++|+.+|...
T Consensus 76 ~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 76 GPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred ecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 532 2 23456899999987678999999988753
No 12
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=2.8e-11 Score=82.40 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=83.4
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCC-CcceeEEEEEEEEeccceeEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGG-GDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g-~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
++.++.|+||+++||+++.|+.+ +|+|+|. +..++... .++|+...+.+..+ +....+.+++.++|+. +++.|+
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~~ 76 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAWR 76 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEEE
Confidence 67899999999999999999999 8999985 66665431 35677777766543 2334678889999875 588899
Q ss_pred EEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEc
Q 036559 85 TYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVN 123 (130)
Q Consensus 85 iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~ 123 (130)
...++. ..-....++.+.|.++++|.++|...|...
T Consensus 77 ~~~~~~---~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 77 GGLPFP---GLLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred ecCCCC---cEeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 876653 233567899999987778999999888643
No 13
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.40 E-value=1.2e-11 Score=85.60 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=85.1
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCC---CCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGD---GGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~---g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
++.++.|+||+++||+.+.|+.+ +|+|+|+ +.++++++.+ ..+|+.-.+.+..++-....+-++..+++ +++++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f~ 77 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRFV 77 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeEE
Confidence 46789999999999999999999 9999997 7789987432 24577777777765422345666676664 44688
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEc
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVN 123 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~ 123 (130)
+..+.|. +..+..++.+.|.++ +|.++..++|+.-
T Consensus 78 ~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 78 DEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 8887763 667888999998876 6999999999974
No 14
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=2.4e-11 Score=80.56 Aligned_cols=111 Identities=20% Similarity=0.404 Sum_probs=86.7
Q ss_pred EEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCC-CCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEE
Q 036559 7 EKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGD-GGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTT 85 (130)
Q Consensus 7 ~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (130)
+.++.|++|+++||+++.|+.+ +++|+|+ +.++++.++. ...|....+.+..+ .....+.++..+++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEEE
Confidence 5788999999999999999999 8999997 8888887643 45555555555422 22357788888877 66888998
Q ss_pred EecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 86 YEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 86 ieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
..++.. ..+..++++.+.++++|.++|+.+|.....
T Consensus 78 ~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 113 (141)
T cd07812 78 TGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGP 113 (141)
T ss_pred ecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCc
Confidence 877642 578999999999875799999999998754
No 15
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.35 E-value=2.4e-11 Score=83.10 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=79.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
+++.++.|+||+++||+++.|+.+ +|+|.|. +++++++.+. +.-..+.+..| ....+..++..+++.. .+.|.
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g-~~~~~~~~v~~~~~~~-~i~~~ 73 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWRDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAG-LSVEWDAEITEQVPNE-RIAWR 73 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHhChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCC-CcEEEEEEEeccCCCC-EEEEE
Confidence 367899999999999999999999 9999996 8899887442 22222333223 3345566666555544 58898
Q ss_pred EEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 85 TYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 85 iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
...|. + .+.+++.+.|.++++|.+++++.|++...
T Consensus 74 ~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 74 SVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred ECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 76543 3 56799999998877899999999997753
No 16
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.34 E-value=9.5e-11 Score=81.61 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=81.4
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceee---EEEE--cCCCCcccEEEEEEeCCCcceeEEEEEEEEeccc
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKS---IDIL--QGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEAN 78 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s---~e~~--eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~ 78 (130)
.+++.++.|++|+++||+++.|+.+ +|+|+|. ... ++.. +++.++|+...++...+. .....++..+++ +
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-N 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-C
Confidence 4688999999999999999999999 9999995 333 2221 233467887777655421 134556777765 5
Q ss_pred eeEEEEEEecCCCccCee-eEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 79 LTGKYTTYEGDGLLKLAE-KSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 79 ~~~~y~iieg~~~~~~~~-~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
+++.|+...++. +. .+..++.+.|.+ ++|.++|+.+|+...
T Consensus 77 ~~i~~~~~~~~~----~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~ 118 (150)
T cd07818 77 ERIEYELRFIKP----FEATNDVEFTLEPVG-GGTKVTWGMSGELPF 118 (150)
T ss_pred cEEEEEEEecCC----ccccceEEEEEEEcC-CceEEEEEEEecCCc
Confidence 579999876543 33 678999999995 579999999998654
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.33 E-value=4.5e-11 Score=82.04 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=76.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
+++.++.+++|+++||+++.|+.+ +++|+|+ +++++.++++ .......+.+..-+.....+-++.++|+. +++.++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEV-LARCIPG-CESLEKIGPN-EYEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTIT 77 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHH-HHhhccc-hhhccccCCC-eEEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEEE
Confidence 578899999999999999999999 9999997 7788876532 11111112221111111224555555554 567777
Q ss_pred EEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 85 TYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 85 iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
....+.. ....+..++++.|. +++|.++|+++|+..+
T Consensus 78 ~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g 114 (144)
T cd05018 78 GEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGG 114 (144)
T ss_pred EEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEcc
Confidence 6543321 35689999999998 5679999999999765
No 18
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=8.7e-11 Score=81.18 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=80.3
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcC--CCCcccEEEEEEeC-CCcceeEEEEEEEEeccceeEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQG--DGGVGTVKLLKFAG-GGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG--~g~~Gsvr~~~~~~-g~~~~~~kErl~~~D~~~~~~~ 82 (130)
++.++.|+|||++||+++.|+.+ +|+|.|... ......+ +-++|+...+.... |++ ..+..++.++++.. +++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~-~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRR-HPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccc-cceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EEE
Confidence 57889999999999999999999 999998522 2222223 24678777776654 333 35667788887765 688
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
|+..-.+. +......++.+.|.++|+|+++++.+|...+.
T Consensus 78 ~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~ 117 (144)
T cd07825 78 WRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTD 117 (144)
T ss_pred EEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChh
Confidence 98531111 23345678899998878899999999886543
No 19
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.31 E-value=8.3e-11 Score=80.08 Aligned_cols=105 Identities=18% Similarity=0.316 Sum_probs=76.0
Q ss_pred ecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEEEecCCC
Q 036559 12 SAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDGL 91 (130)
Q Consensus 12 i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iieg~~~ 91 (130)
|+|||++||+++.|+.+ +|+|+|. ++++++++.++. +..-.+....++....+..++.. ++... +.+..++|
T Consensus 1 V~ap~~~V~~~i~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g--- 72 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISG--- 72 (130)
T ss_dssp ESS-HHHHHHHHTTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSET---
T ss_pred CCCCHHHHHHHHHHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCC---
Confidence 68999999999999999 9999996 889999976543 33335566654433455666554 34443 77777777
Q ss_pred ccCeeeEEEEEEEEecCC--CCeEEEEEEEEEEcCCc
Q 036559 92 LKLAEKSVYDIKIVDSGN--GGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 92 ~~~~~~y~~t~~v~p~~~--g~s~v~w~~~~~~~~~~ 126 (130)
+++.+.+++++.|.++ |+|.++++.+|+.....
T Consensus 73 --~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~ 107 (130)
T PF03364_consen 73 --PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG 107 (130)
T ss_dssp --TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS
T ss_pred --CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc
Confidence 4899999999999986 35777777777764443
No 20
>PRK10724 hypothetical protein; Provisional
Probab=99.31 E-value=8.7e-11 Score=84.17 Aligned_cols=111 Identities=12% Similarity=0.203 Sum_probs=85.2
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 3 VLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 3 ~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
+..++.++.+++||+++|+++.|..+ +|+|+|. .+++++++-++. +.+..++..-++-......|.. +++.+ ++.
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 45788899999999999999999999 9999996 778888865432 2344444443332344555644 55554 799
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEc
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVN 123 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~ 123 (130)
+..++|+ ++.+.+.|+|.|.++++|.|++..+|+..
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~ 124 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFT 124 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEc
Confidence 9999883 78899999999998778999999999965
No 21
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.28 E-value=1.4e-10 Score=79.06 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=80.7
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTT 85 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (130)
++.++.|+||+++||+++.|+.+ +|+|+|. +..++.....| |+.+.+....++....+..++.++|+. +++.|+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~ 76 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTW 76 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEe
Confidence 67889999999999999999999 8999995 22333221222 666655444333334678889999866 5899998
Q ss_pred EecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 86 YEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 86 ieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
..++. + +.-....++++.|.+ ++|.++|+.+|.+..
T Consensus 77 ~~~~~-~-~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~ 112 (139)
T cd07814 77 AFSDE-T-PGPETTVTVTLEETG-GGTRLTLTHSGFPEE 112 (139)
T ss_pred cccCC-C-CCCceEEEEEEEECC-CCEEEEEEEEccChH
Confidence 87653 1 234578899999998 569999999988753
No 22
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=4.8e-10 Score=78.36 Aligned_cols=109 Identities=17% Similarity=0.283 Sum_probs=78.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEc--CCCCcccEEEEEEeCCCc-ceeEEEEEEEEeccceeE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQ--GDGGVGTVKLLKFAGGGD-YQQTKQRIDALDEANLTG 81 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~e--G~g~~Gsvr~~~~~~g~~-~~~~kErl~~~D~~~~~~ 81 (130)
.++.+..|++|+++||+++.|+.+ +|+|+|+ ++++++++ ++.++|+.-++......+ ...+.-++.++++ .+++
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~ 78 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLL 78 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEE
Confidence 366788999999999999999999 9999996 88998886 334667665444332212 1234455555544 5578
Q ss_pred EEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 82 KYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 82 ~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
.|+. +|+. + ...+++|.|.++ +|.|+++.+++..+
T Consensus 79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 8885 5642 2 368899999765 69999999998643
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=2.2e-09 Score=75.00 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=71.5
Q ss_pred EEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeE--EEEEEEEeccceeEEEE
Q 036559 7 EKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQT--KQRIDALDEANLTGKYT 84 (130)
Q Consensus 7 ~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~--kErl~~~D~~~~~~~y~ 84 (130)
+.++.+++||++||+++.|+.+ ++.|+|+ +++.+..+ ++.. .-.+++..|+-...+ +=++..++++.+++.++
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~-~~~~~pg-~~~~~~~~-~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIER-VAPCLPG-ASLTEVEG-DDEY--KGTVKVKLGPISASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHH-HHhcCCC-ceeccccC-CCeE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEE
Confidence 5688999999999999999999 8999997 87877643 2211 122333322211112 22455566467788777
Q ss_pred EEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 85 TYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 85 iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
.-..+.-...--....++++.| .+++|.++|+++++..+
T Consensus 77 ~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g 115 (146)
T cd07823 77 ATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTG 115 (146)
T ss_pred EEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEee
Confidence 5431111001124677888888 44679999999998654
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.83 E-value=7.9e-08 Score=67.92 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=78.5
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCC--cceeEEEEEEEEeccceeEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGG--DYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~--~~~~~kErl~~~D~~~~~~~ 82 (130)
.++.+..|++|+++||+.+.|+.. +...+|+ ++|++. +|+.-. -.+.+.-|. ....-+=++..+|+..++++
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~-~a~ciPG-~qs~e~-~g~e~~---~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~ 75 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQ-VAACIPG-VQSVET-NGDEYT---AKVKLKIGPLKGTFSGRVRFVNVDEPPRSIT 75 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHH-HHhhcCC-cceeee-cCCeEE---EEEEEeecceeEEEEEEEEEccccCCCcEEE
Confidence 367789999999999999999999 7899998 999995 465211 122233231 11223456666788888988
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEE
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIH 121 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~ 121 (130)
...-+|..- .+-+..+.+++.|.+++ |++.|.+.-+
T Consensus 76 i~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~ 111 (146)
T COG3427 76 INGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADAN 111 (146)
T ss_pred EEeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEcc
Confidence 887653332 57788999999999887 9999998754
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.74 E-value=6.1e-07 Score=62.61 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=68.6
Q ss_pred EEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCC-c-ceeEEEEEEEEeccceeEEEEEE
Q 036559 9 EVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGG-D-YQQTKQRIDALDEANLTGKYTTY 86 (130)
Q Consensus 9 ~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~-~-~~~~kErl~~~D~~~~~~~y~ii 86 (130)
+.+|++|+++||+.+.|+.+ +-+.+|+ +++.+.+. +.-.+. ++..-|. + .-..+=++..+|++++.. .++-
T Consensus 2 s~~v~a~~~~vw~~l~D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEEE
T ss_pred cEEecCCHHHHHHHhcCHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eeee
Confidence 57899999999999999999 7799998 88998775 421122 2222231 1 123344566777777653 3443
Q ss_pred ecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 87 EGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 87 eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
..+.. .-.+..+.+++...++++|.|.|+++++..+
T Consensus 75 g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G 110 (140)
T PF06240_consen 75 GRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGG 110 (140)
T ss_dssp EEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEEC
T ss_pred ccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEcc
Confidence 33322 2345667777777666669999999998643
No 26
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.67 E-value=2e-07 Score=67.84 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=84.9
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeC-CCcceeEEEEEEEEeccceeE
Q 036559 3 VLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG-GGDYQQTKQRIDALDEANLTG 81 (130)
Q Consensus 3 ~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~-g~~~~~~kErl~~~D~~~~~~ 81 (130)
-..++.+|+|+.|++.||...+|+.+ +|.||.+ +.||++.+-.- -+|+... ++..-.++-+|. -|.++.++
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~I 140 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGERI 140 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcEE
Confidence 35688999999999999999999999 9999984 99999975442 4465543 443223444545 57889999
Q ss_pred EEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 82 KYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 82 ~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
.++=++|.-++ -.+.++|.+..+..|.|+.+++|.+-++
T Consensus 141 ~W~Sl~Ga~v~-----NsG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 141 QWESLPGARVE-----NSGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred eeecCCCCcCC-----CCccEEeeeCCCCceEEEEEEEecCCcc
Confidence 99999996443 2577899888877889999999987554
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.65 E-value=7.6e-07 Score=63.11 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=71.7
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 3 VLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 3 ~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
..++..++.|+||+++||+++.|+.+ +++|.|. . . .+-.+|....+.+...+. ....-++.++|+.. ++.
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~-~-~-----~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~~-~l~ 79 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPER-LARWFAP-G-T-----GDLRVGGRVEFVMDDEEG-PNATGTILACEPPR-LLA 79 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHHH-HHhhcCC-C-C-----CCcccCceEEEEecCCCC-CccceEEEEEcCCc-EEE
Confidence 56789999999999999999999998 8999984 2 1 222344444455543111 24567778777664 777
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEc
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVN 123 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~ 123 (130)
|+...++ .....++.|.+.+ ++|.++...++.+.
T Consensus 80 ~~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~ 113 (157)
T cd08899 80 FTWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDE 113 (157)
T ss_pred EEecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCc
Confidence 8875443 1235678888765 56999888877653
No 28
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.58 E-value=1.3e-06 Score=60.03 Aligned_cols=106 Identities=12% Similarity=0.214 Sum_probs=66.5
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
.++.++.|+||+++||+++.|+.. +++|.|... .....+.+..|. +.+..+ ......-++..+++.+ ++.|+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~~~--~~~~~~~~~~g~---~~~~~~-~~~~~~~~i~~~~p~~-~l~~~ 73 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEH-FGQWFGVKL--GPFVVGEGATGE---ITYPGY-EHGVFPVTVVEVDPPR-RFSFR 73 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhh-hhhcccccC--CCcccCCcceeE---EecCCC-CccceEEEEEEeCCCc-EEEEE
Confidence 578899999999999999999998 899998632 111112222232 333322 1123445777776655 77788
Q ss_pred EEecCC---Cc-cCeeeEEEEEEEEecCCCCeEEEEEEE
Q 036559 85 TYEGDG---LL-KLAEKSVYDIKIVDSGNGGSIFKFVEE 119 (130)
Q Consensus 85 iieg~~---~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~ 119 (130)
...... .. ..-.....++++.+.++ +|.|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~ 111 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTES 111 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEc
Confidence 643320 00 01223568899999864 599999876
No 29
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.57 E-value=5.3e-07 Score=63.50 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=83.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEE
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKY 83 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 83 (130)
-.++++..++-+|+++|+++.|... +|+++|- -.+.++.+.++ ...+-.++.+-.+=.++..=|.. +++..+.+.-
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhhh
Confidence 3678889999999999999999999 9999996 55667776653 12444444443331234444543 5566657777
Q ss_pred EEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 84 TTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 84 ~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
.+++| |++...++|++.|.++++|.|+..++|+...
T Consensus 78 ~l~~G-----PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 78 KLIDG-----PFKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhcC-----ChhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 77777 5888899999999888899999999999753
No 30
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.48 E-value=1.6e-05 Score=57.76 Aligned_cols=121 Identities=11% Similarity=0.033 Sum_probs=77.1
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCc---ceeEEEEEEEEecccee
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGD---YQQTKQRIDALDEANLT 80 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~---~~~~kErl~~~D~~~~~ 80 (130)
..+..+..+++||+++|+++.|.+. .|+|.|. +.++++++-.+.--.+-...+....+ ...+-.+-...+.++..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 5677888999999999999999998 8999996 88999987543212233333332221 11222221222222334
Q ss_pred EEEEEEecCC-Cc--c---CeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCc
Q 036559 81 GKYTTYEGDG-LL--K---LAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 81 ~~y~iieg~~-~~--~---~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~ 126 (130)
+...+...+. .+ . ....+.+.+.+.|.++++|.++....+++.+..
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~i 170 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSI 170 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCC
Confidence 4344433321 01 0 156778889999998889999999999987643
No 31
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.48 E-value=7e-06 Score=56.76 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=65.5
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccC-CceeeEEEEcCCCCcccEEEEEE-eCCCcceeEEEEEEEEeccceeEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAP-QTIKSIDILQGDGGVGTVKLLKF-AGGGDYQQTKQRIDALDEANLTGKY 83 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P-~~v~s~e~~eG~g~~Gsvr~~~~-~~g~~~~~~kErl~~~D~~~~~~~y 83 (130)
+..+..|+||+++||+++.|+.. +.+|++ +.+. +...+.+..+|..-.+.+ .+++......=++.++++.+ ++.|
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~~ 78 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIVY 78 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 56778899999999999999887 777764 3222 111122322333333333 22332122344677887665 7778
Q ss_pred EEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEE
Q 036559 84 TTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 84 ~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~ 122 (130)
+.-.++ + ....++++.|.+ ++|.++.+..|..
T Consensus 79 t~~~~~----~--~~~v~~~~~~~~-~gT~ltl~~~~~~ 110 (139)
T cd08894 79 DHGSGP----P--RFRLTVTFEEQG-GKTRLTWRQVFPT 110 (139)
T ss_pred EeccCC----C--cEEEEEEEEECC-CCEEEEEEEEcCC
Confidence 864331 1 246788998876 6799999887643
No 32
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.48 E-value=1.3e-05 Score=55.58 Aligned_cols=109 Identities=19% Similarity=0.174 Sum_probs=64.9
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCC-ceeeEEEEcCCCCcccEEEEEEe-CCCcceeEEEEEEEEeccceeEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQ-TIKSIDILQGDGGVGTVKLLKFA-GGGDYQQTKQRIDALDEANLTGKY 83 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~-~v~s~e~~eG~g~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 83 (130)
+..+..++||+++||+++.|... +.+|+.. ---.++..+.+-.+|..-.+.+. .++......=++.++|+.+ ++.|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEEE
Confidence 45677899999999999999988 7778753 11122222233223333333332 3333233445677787665 6666
Q ss_pred EEE--ecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEE
Q 036559 84 TTY--EGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120 (130)
Q Consensus 84 ~ii--eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~ 120 (130)
+-. .++. +......++.+.|.+ ++|.++.+..+
T Consensus 80 t~~~~~~~~---~~~~s~v~~~l~~~~-~gT~l~~~~~~ 114 (143)
T cd08900 80 TYTMHIGGT---LLSASLATVEFAPEG-GGTRLTLTEQG 114 (143)
T ss_pred EEeeccCCc---cccceEEEEEEEECC-CCEEEEEEEEE
Confidence 643 2221 122345788898876 56999998775
No 33
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.45 E-value=1.8e-05 Score=55.11 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=65.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCC-ceeeEEEEcCCCCcccEEEE--EEeC------CCcceeEEEEEEEEe
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQ-TIKSIDILQGDGGVGTVKLL--KFAG------GGDYQQTKQRIDALD 75 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~-~v~s~e~~eG~g~~Gsvr~~--~~~~------g~~~~~~kErl~~~D 75 (130)
++..+..|+||+++||+++.|... +.+|.+. .+ .+.....+-.+|..-.+ ++.. .+......=++.+++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 356778899999999999999998 7777652 22 22222223222322222 2222 122123444678887
Q ss_pred ccceeEEEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEE
Q 036559 76 EANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEI 120 (130)
Q Consensus 76 ~~~~~~~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~ 120 (130)
+.+ ++.|+..-.+... + .....++.+.+.+ ++|.++++...
T Consensus 79 p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~ 119 (146)
T cd08895 79 PNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSG 119 (146)
T ss_pred CCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeC
Confidence 776 6777753222211 1 2347889998886 56899888764
No 34
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.43 E-value=1.1e-05 Score=54.62 Aligned_cols=108 Identities=13% Similarity=0.037 Sum_probs=65.8
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
|++.++.|+|||++||+++.|+.. +++|.+... + .++-.+|.--.+.....+. ..+.=++.++++ ++++.|+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~~~-~~~W~~~~~--~---~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~~-~~~l~~~ 72 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDPEF-TRQYWGGTT--V---ESDWKVGSAFEYRRGDDGT-VDVEGEVLESDP-PRRLVHT 72 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCchh-hhheecccc--c---ccCCcCCCeEEEEeCCCcc-cccceEEEEecC-CCeEEEE
Confidence 578899999999999999999998 899988622 1 2332333322233332111 134456666764 4467777
Q ss_pred EEecCCC-ccCeeeEEEEEEEEecCCCCeEEEEEEEEE
Q 036559 85 TYEGDGL-LKLAEKSVYDIKIVDSGNGGSIFKFVEEIH 121 (130)
Q Consensus 85 iieg~~~-~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~ 121 (130)
...+... ..+-.....++.+.|.++ +|.++.+.+-.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~ 109 (136)
T cd08893 73 WRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGF 109 (136)
T ss_pred EecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCC
Confidence 6433321 002235677888888765 67777765543
No 35
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.41 E-value=1.7e-05 Score=55.19 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=65.3
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEe-CCCcceeEEEEEEEEeccceeEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFA-GGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
++.+..++||+++||+++.|... +.+|....--.+...+.|-.+|..-.+.+. .++....+.=++.++++.+ ++.|+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEEE
Confidence 56778899999999999999887 667765431122223333233333334333 2332223444667777654 55555
Q ss_pred EE-ecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEE
Q 036559 85 TY-EGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIH 121 (130)
Q Consensus 85 ii-eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~ 121 (130)
-- ++.. -.....++.+.+.+ ++|.++.+..|.
T Consensus 80 ~~~~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~ 112 (142)
T cd07826 80 EEFEGLP----DGVALETVTFTELG-GRTRLTATSRYP 112 (142)
T ss_pred eEecCCC----CCceEEEEEEEECC-CCEEEEEEEEeC
Confidence 32 2221 12357788998876 579999887764
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=4.7e-05 Score=53.00 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=62.3
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCc---ee--eEEEEcCCCCcccEEEEEE-eCCCcceeEEEEEEEEeccce
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQT---IK--SIDILQGDGGVGTVKLLKF-AGGGDYQQTKQRIDALDEANL 79 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~---v~--s~e~~eG~g~~Gsvr~~~~-~~g~~~~~~kErl~~~D~~~~ 79 (130)
+..+..|+||+++||+++.|... +.+|++.. +. +.+... | |..+ +.+ .+++......=++.++|+.+
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~-~~~W~~p~~~~~~~~~~d~~~--G--G~~~-~~~~~~~g~~~~~~g~v~~i~p~~- 74 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPEL-LKQWFCPKPWTTEVAELDLRP--G--GAFR-TVMRGPDGEEFPNPGCFLEVVPGE- 74 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHH-HhccCCCCCccceEEEEEeec--C--cEEE-EEEECCCCCEecceEEEEEEeCCC-
Confidence 45678899999999999999887 66666421 22 222222 2 2333 333 23333223455678887766
Q ss_pred eEEEEE--Eec-CCCccCeeeEEEEEEEEecCCCCeEEEEEEEEE
Q 036559 80 TGKYTT--YEG-DGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIH 121 (130)
Q Consensus 80 ~~~y~i--ieg-~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~ 121 (130)
++.|+- .++ ++...+ ....++++.|.+ ++|.++.+..+.
T Consensus 75 ~l~~t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~ 116 (146)
T cd08896 75 RLVFTDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARHW 116 (146)
T ss_pred EEEEEEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEeC
Confidence 566663 222 111111 146789999875 568988876553
No 37
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.34 E-value=1.2e-05 Score=55.19 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=61.0
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceee--EEEEcCCCCcccEEEEEEe-CCCc-ceeEEEEEEEEecccee
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKS--IDILQGDGGVGTVKLLKFA-GGGD-YQQTKQRIDALDEANLT 80 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s--~e~~eG~g~~Gsvr~~~~~-~g~~-~~~~kErl~~~D~~~~~ 80 (130)
|+..++.++||+++||+++.|... +.+|++. ... +...+.|-.+|..-.+.+. .++. ...+.=++.++++.+ +
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~-~ 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHK-L 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCC-E
Confidence 578889999999999999999988 7888643 111 1111223233333333332 2221 112344566776655 7
Q ss_pred EEEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEE
Q 036559 81 GKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFV 117 (130)
Q Consensus 81 ~~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~ 117 (130)
+.|+...+ ...++.+.|.+ ++|.++.+
T Consensus 78 l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~ 104 (133)
T cd08897 78 IEYTMEDG---------REVEVEFTEEG-DGTKVVET 104 (133)
T ss_pred EEEEcCCC---------CEEEEEEEECC-CCEEEEEE
Confidence 88886321 25789999876 56888765
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.15 E-value=0.00016 Score=50.43 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=62.7
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccC-Cc------eeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccc
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAP-QT------IKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEAN 78 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P-~~------v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~ 78 (130)
+..++.|+||+++||+++.| . +.+|.+ .. ...|++.-..| |..+ +. ..++. ....=++.++++.+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~-~~~g~-~~~~g~v~~v~p~~ 73 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EI-GEDGT-ECEWGTVLAWEPPS 73 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-Ee-cCCCc-EeceEEEEEEcCCC
Confidence 57899999999999999987 3 445543 21 13344321223 3333 22 22332 22345777787765
Q ss_pred eeEEEEEE-ecCCCc-cCeeeEEEEEEEEecCCCCeEEEEEEEEEEc
Q 036559 79 LTGKYTTY-EGDGLL-KLAEKSVYDIKIVDSGNGGSIFKFVEEIHVN 123 (130)
Q Consensus 79 ~~~~y~ii-eg~~~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~ 123 (130)
+++|+-. ..+... ... .-..++.+.|.++++|.++.+..+-..
T Consensus 74 -~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~ 118 (149)
T cd08891 74 -RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFER 118 (149)
T ss_pred -EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccc
Confidence 6667753 111110 011 236889999987467999988876543
No 39
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.11 E-value=0.00011 Score=50.65 Aligned_cols=100 Identities=11% Similarity=0.035 Sum_probs=63.4
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTT 85 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (130)
+..++.|+||+++||+++.+... +.+|.+. -.+.++..| |.+ .+.+...++ .+.=++.++++. +++.|+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~~~--~~~g~~~~~~p~-~~l~~~w 71 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMYGA--SVPVNVLEIEPN-KRIVIEW 71 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHH-hcccccc-CCCccccCC----CEE-EEEEEccCC--ceEEEEEEEcCC-CEEEEEe
Confidence 46789999999999999999988 6776443 224443323 232 355543332 123366677555 4777876
Q ss_pred EecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEE
Q 036559 86 YEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIH 121 (130)
Q Consensus 86 ieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~ 121 (130)
-.++ +. -..++++.+.++++|.++.+...-
T Consensus 72 ~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~ 101 (136)
T cd08901 72 GDPG----EP--TTVEWTFEELDDGRTFVTITESGF 101 (136)
T ss_pred cCCC----CC--EEEEEEEEECCCCcEEEEEEECCC
Confidence 4321 22 347889988875679988886543
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.93 E-value=0.0003 Score=46.80 Aligned_cols=96 Identities=16% Similarity=0.258 Sum_probs=58.4
Q ss_pred cCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEEEecCCCc
Q 036559 13 AVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDGLL 92 (130)
Q Consensus 13 ~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iieg~~~~ 92 (130)
+||+++||+++.+... +.+|.+......+. ..| |+++... .++......=++.++++.+ ++.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t~~~~-~~~W~~~~~~~~~~--~~G--g~~~~~~--~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~- 71 (124)
T PF08327_consen 1 DAPPERVWEALTDPEG-LAQWFTTSEAEMDF--RPG--GSFRFMD--PDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP- 71 (124)
T ss_dssp SSSHHHHHHHHHSHHH-HHHHSEEEEEEEEC--STT--EEEEEEE--TTSEEEEEEEEEEEEETTT-EEEEEEEEETSS-
T ss_pred CcCHHHHHHHHCCHhH-HhhccCCCcceeee--ecC--CEEEEEe--cCCCCceeeEEEEEEeCCE-EEEEEEEccCCC-
Confidence 6999999999999988 78883211222222 122 3444422 4443233444588887766 577875433321
Q ss_pred cCeeeEEEEEEEEecCCCCeEEEEEEE
Q 036559 93 KLAEKSVYDIKIVDSGNGGSIFKFVEE 119 (130)
Q Consensus 93 ~~~~~y~~t~~v~p~~~g~s~v~w~~~ 119 (130)
+-.....++.|.+ .+++|.++.+.+
T Consensus 72 -~~~~~~v~~~~~~-~~~~T~l~~~~~ 96 (124)
T PF08327_consen 72 -DGPESRVTFEFEE-EGGGTRLTLTHS 96 (124)
T ss_dssp -SCEEEEEEEEEEE-ETTEEEEEEEEE
T ss_pred -CCCceEEEEEEEE-cCCcEEEEEEEE
Confidence 1345688899999 556788877763
No 41
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.87 E-value=0.00065 Score=46.26 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=61.1
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTT 85 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (130)
++.+..|+||+++||+++.+... +.+|+.. ..+.+...| |..+ +..|. +.=++.++++.. ++.|+-
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~~-~l~~~w 67 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPGK-KIVQKW 67 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCCC-EEEEEE
Confidence 56788999999999999999887 7788753 334443223 3333 33331 334566776544 556664
Q ss_pred EecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEE
Q 036559 86 YEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 86 ieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~ 122 (130)
--.+. +. -..-..++.+.+. +++|.++.+....+
T Consensus 68 ~~~~~-~~-~~~s~v~~~l~~~-~~gT~ltl~~~g~~ 101 (126)
T cd08892 68 RFKSW-PE-GHYSTVTLTFTEK-DDETELKLTQTGVP 101 (126)
T ss_pred EcCCC-CC-CCcEEEEEEEEEC-CCCEEEEEEEECCC
Confidence 32221 10 1224688888887 45688888766544
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0014 Score=46.25 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=60.1
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 3 VLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 3 ~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
-.++..+..|++|+++||+++.|... +.+|+.+--...++.-|. +....+... +++...+.-++.++++.. ++.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~-~g~~~~~~~~~~~v~p~~-rIv 80 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPEL-LARWFMPGGAEFDARTGG---GERVRFRGP-DGPVHSFEGEYLEVVPPE-RIV 80 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHH-HHhhcCCCCCccceecCC---ceEEeeecC-CCCeeecceEEEEEcCCc-EEE
Confidence 35788899999999999999999987 788886211011211121 222233333 333235566777776655 566
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCC
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNG 110 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g 110 (130)
|+-.-.+.-. +...-..++++.+..+|
T Consensus 81 ~tw~~~~~~~-~~~~~~v~~~l~~~~~g 107 (149)
T COG3832 81 FTWDFDEDGE-PFLKSLVTITLTPEDDG 107 (149)
T ss_pred EEeccCCCCC-cccCceEEEEEEEecCC
Confidence 6654443221 23345677888886665
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.51 E-value=0.00083 Score=46.37 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=53.2
Q ss_pred ecCCHHHHHHHhhhcCcccccc-cCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEEEecCC
Q 036559 12 SAVAPSRLFKALNDSHNLLPKI-APQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90 (130)
Q Consensus 12 i~apa~~vw~~~~d~~~~~p~~-~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iieg~~ 90 (130)
++||+++||+++.|... +.+| .+. ...+++..| |..+. ..+. +.=++.++|+.+ ++.|+---.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~-l~~w~~~~-~~~~d~~~G----G~f~~---~~~~----~~G~~~ev~pp~-rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYT-LTRLSLGS-PAEMDAKVG----GKFSL---FNGS----VEGEFTELEKPK-KIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHHcCHHH-HHHHhcCC-CccccCCcC----CEEEE---ecCc----eEEEEEEEcCCC-EEEEEEecCCC
Confidence 47999999999999887 6777 432 222222222 23332 2221 333666676665 44455421211
Q ss_pred CccCeeeEEEEEEEEecCCCCeEEEEEEE
Q 036559 91 LLKLAEKSVYDIKIVDSGNGGSIFKFVEE 119 (130)
Q Consensus 91 ~~~~~~~y~~t~~v~p~~~g~s~v~w~~~ 119 (130)
.+... -..++.+.|.++++|.++.+..
T Consensus 67 ~~~~~--s~vt~~~~~~~~g~T~lt~~~~ 93 (132)
T PTZ00220 67 EEDVY--SKVTIEFRAVEEDHTELKLTQT 93 (132)
T ss_pred CCCCc--eEEEEEEEeCCCCcEEEEEEEe
Confidence 11112 3588999997667798888877
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.42 E-value=0.013 Score=43.64 Aligned_cols=119 Identities=9% Similarity=-0.020 Sum_probs=74.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCC-CcccEEEEEEe-C--C--CcceeEEEEEEEEeccc
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDG-GVGTVKLLKFA-G--G--GDYQQTKQRIDALDEAN 78 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g-~~Gsvr~~~~~-~--g--~~~~~~kErl~~~D~~~ 78 (130)
.+..+..+++|++++|+++.|... .++|.+ .++++++++--+ .. .+-.+.+. + . .+-..+--+....++..
T Consensus 46 ~~~ge~~v~as~~~v~~ll~D~~~-r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVKDPRT-RFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHhCcch-hhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 345677899999999999999998 899999 599999987432 22 33333332 1 2 22233333322223333
Q ss_pred eeEEEEEEecCCCc------cCeeeEEEEEEEEec---CCCCeEEEEEEEEEEcCCc
Q 036559 79 LTGKYTTYEGDGLL------KLAEKSVYDIKIVDS---GNGGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 79 ~~~~y~iieg~~~~------~~~~~y~~t~~v~p~---~~g~s~v~w~~~~~~~~~~ 126 (130)
..+.-+-+.-+.++ -....+.+-+.+.|. +++.|.|+.....++.|+.
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~ 179 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPD 179 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCC
Confidence 23222222221111 134567888999998 7778999999999998533
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.38 E-value=0.018 Score=43.92 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=71.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCC-CCcccEEEEEEeC---CCcceeEEEEEEE--Eecc
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGD-GGVGTVKLLKFAG---GGDYQQTKQRIDA--LDEA 77 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~---g~~~~~~kErl~~--~D~~ 77 (130)
..+..+..+++|++++|+++.|... .++|.+. ..++++++-- ...+ +-.+.++. -.+-..+-.+-.. .+..
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLSDPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHhCcch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence 3567888899999999999999998 8999995 8899998732 2222 33333332 1222233322221 2222
Q ss_pred c-eeEEEEEEe-------cCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEc
Q 036559 78 N-LTGKYTTYE-------GDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVN 123 (130)
Q Consensus 78 ~-~~~~y~iie-------g~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~ 123 (130)
. ..+..+-+. .+.. ....+.+-+.+.|.++++|.|+.....+|.
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyV--R~~~~~ggW~I~p~~~~~t~VtY~~~~dPg 205 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYS--RTEVACAGFVIRQDCGTCTEVSYYNETNPK 205 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeE--EEEEEeeeEEEEECCCCcEEEEEEEEcCCC
Confidence 2 222222222 1111 356788999999999889999988876653
No 46
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.07 Score=37.46 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=74.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEe--C-CCc-ceeEEEEEEE--Eecc
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFA--G-GGD-YQQTKQRIDA--LDEA 77 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~--~-g~~-~~~~kErl~~--~D~~ 77 (130)
+++.....|+||.|-||+-....++ +..+.|..+ +-.-+|+ ..+..-.+++. + |.+ -...+-|+++ +|+-
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsrpd~-lq~LTppw~--VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSRPDA-LQRLTPPWI--VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcCccH-HHhcCCCcE--EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 5677788899999999999988888 667777533 3333453 22222333322 1 222 1356666666 6655
Q ss_pred ceeEEEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 78 NLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 78 ~~~~~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
. +++=..+.|+. +.-+.+-+-++.+.++ +|++.=++.|+...+
T Consensus 78 ~-~FtDv~i~gPf---p~~~WrHtH~F~~egg-~TvliD~Vsye~p~g 120 (153)
T COG4276 78 S-RFTDVCITGPF---PALNWRHTHNFVDEGG-GTVLIDSVSYELPAG 120 (153)
T ss_pred c-eeeeeeecCCc---cceeeEEEeeeecCCC-cEEEEeeEEeeccCc
Confidence 4 66677777764 2335888999988864 689999999997654
No 47
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.83 E-value=0.063 Score=37.88 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=50.5
Q ss_pred EEEEEEecCC-------HHHHHHHh-hhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEecc
Q 036559 6 VEKEVPSAVA-------PSRLFKAL-NDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEA 77 (130)
Q Consensus 6 ~~~~v~i~ap-------a~~vw~~~-~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~ 77 (130)
+++.++||-| .+++|+-+ ....+ -..+.|+ +.+|++++.++. --.|.++|++. .++|++. +++.
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~~ 73 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEPP 73 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecCC
Confidence 4566677754 67999999 33333 2356664 899999976642 45699999875 6999977 5444
Q ss_pred ceeEEEEEEe
Q 036559 78 NLTGKYTTYE 87 (130)
Q Consensus 78 ~~~~~y~iie 87 (130)
. ++.|.+-.
T Consensus 74 ~-~v~f~~~~ 82 (141)
T cd08863 74 S-RVHFLQAD 82 (141)
T ss_pred c-EEEEEecC
Confidence 4 67788765
No 48
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.66 E-value=0.13 Score=39.22 Aligned_cols=115 Identities=11% Similarity=0.021 Sum_probs=68.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcC-CCCcccEEEEEEeCC-Cc---ceeEEEEEEEEeccce
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQG-DGGVGTVKLLKFAGG-GD---YQQTKQRIDALDEANL 79 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG-~g~~Gsvr~~~~~~g-~~---~~~~kErl~~~D~~~~ 79 (130)
.+..+..+++|++++++++.|... .++|.+. +.++++++- +..- .+..++..+- ++ -..+--+-..-+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 456677899999999999999998 8999995 889999863 3222 2555543332 11 1222222111222222
Q ss_pred ---eEEEEEEecCCCc--c---CeeeEEEEEEEEecCCCCeEEEEEEEEEE
Q 036559 80 ---TGKYTTYEGDGLL--K---LAEKSVYDIKIVDSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 80 ---~~~y~iieg~~~~--~---~~~~y~~t~~v~p~~~g~s~v~w~~~~~~ 122 (130)
.+....+.=+-.+ . ...++.+-+.+.|.+++.|.+.+...-+|
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 1222222111111 0 24556788999999888899988665443
No 49
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.54 E-value=0.16 Score=35.88 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=72.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCc---ceeEEEEEEEEeccce-
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGD---YQQTKQRIDALDEANL- 79 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~---~~~~kErl~~~D~~~~- 79 (130)
..+..+..+++|++++++++.|... .++|-|. +.++++++-.+..-.+....+....+ -..+--+-...++++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~ 116 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLMDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY 116 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHhCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence 3456778899999999999998877 8899985 88888887542213444444443321 1122222122233222
Q ss_pred eEEEEEEecCCCc---cCe--eeEEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 80 TGKYTTYEGDGLL---KLA--EKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 80 ~~~y~iieg~~~~---~~~--~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
.+...=++.+..+ ..+ ..+.+-+.+.|.++++|.+++....++.+..+
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP 169 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP 169 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc
Confidence 2222222221111 112 22345678889988899999999999887543
No 50
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.46 E-value=0.12 Score=38.43 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=70.5
Q ss_pred EEEEEEecCCHHHHH-HHhhhcCcccccccCCceeeEEEEcCCC-CcccEEEEEEeC-CC---cceeEEEEEEEEeccce
Q 036559 6 VEKEVPSAVAPSRLF-KALNDSHNLLPKIAPQTIKSIDILQGDG-GVGTVKLLKFAG-GG---DYQQTKQRIDALDEANL 79 (130)
Q Consensus 6 ~~~~v~i~apa~~vw-~~~~d~~~~~p~~~P~~v~s~e~~eG~g-~~Gsvr~~~~~~-g~---~~~~~kErl~~~D~~~~ 79 (130)
+..+..+++|+++++ .++.|... .++|.+. +.++++++--+ ..--++.+..+. ++ +...+.-|...-++.+.
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~ 128 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC 128 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE
Confidence 567888999999999 55578888 8999995 88888875422 111123322221 11 11233333333333333
Q ss_pred eEEEEEEecCCCcc-----CeeeEEEEEEEEecCC--CCeEEEEEEEEEEcCCcC
Q 036559 80 TGKYTTYEGDGLLK-----LAEKSVYDIKIVDSGN--GGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 80 ~~~y~iieg~~~~~-----~~~~y~~t~~v~p~~~--g~s~v~w~~~~~~~~~~~ 127 (130)
.+.....+-+.++. ....+.+-+.+.|.++ +.|.++|.+..+++|.-|
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP 183 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLP 183 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCC
Confidence 22111122222210 2445667888999865 789999999999987643
No 51
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.28 E-value=0.27 Score=37.54 Aligned_cols=115 Identities=10% Similarity=-0.023 Sum_probs=68.1
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcC-CCCcccEEEEEEeC--C-CcceeEEEEEEE-Eeccc
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQG-DGGVGTVKLLKFAG--G-GDYQQTKQRIDA-LDEAN 78 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG-~g~~Gsvr~~~~~~--g-~~~~~~kErl~~-~D~~~ 78 (130)
..+..+..+++|++++++++-|... .++|.+. ..++++++- +..-- |..+.-.+ . .+-..+-.+-.. -.+++
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhh-hchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 4567788899999999999999999 9999996 889998863 21112 66655333 1 111222222111 12122
Q ss_pred --eeEEEEEEecCCCc--c---Ceee-EEEEEEEEecCCCCeEEEEEEEEEE
Q 036559 79 --LTGKYTTYEGDGLL--K---LAEK-SVYDIKIVDSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 79 --~~~~y~iieg~~~~--~---~~~~-y~~t~~v~p~~~g~s~v~w~~~~~~ 122 (130)
..+.-.-+.-+.++ . .... +.+- .+.|.++++|.|+....-+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 22222211111111 0 2344 3344 78999888999999888777
No 52
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.17 E-value=0.35 Score=35.95 Aligned_cols=119 Identities=8% Similarity=0.019 Sum_probs=67.3
Q ss_pred EEEEEEEecCCHHHHH-HHhhhcCcccccccCCceeeEEEEcCCC-CcccEEEEEEeC-CCc---ceeEEEEEEEEeccc
Q 036559 5 RVEKEVPSAVAPSRLF-KALNDSHNLLPKIAPQTIKSIDILQGDG-GVGTVKLLKFAG-GGD---YQQTKQRIDALDEAN 78 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw-~~~~d~~~~~p~~~P~~v~s~e~~eG~g-~~Gsvr~~~~~~-g~~---~~~~kErl~~~D~~~ 78 (130)
.+..+..+++|++++| +++.|... .++|.+. +.++++++--+ ..--++.++.+. +++ -..+--|-..-+.+.
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~ 127 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVILQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR 127 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHhChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence 4567888999999998 56799998 8999996 88989886422 111122333322 122 223333333233333
Q ss_pred e-eEEEEEEecCCCccCeeeEE-EE-----EEEEe--cCCCCeEEEEEEEEEEcCCcC
Q 036559 79 L-TGKYTTYEGDGLLKLAEKSV-YD-----IKIVD--SGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 79 ~-~~~y~iieg~~~~~~~~~y~-~t-----~~v~p--~~~g~s~v~w~~~~~~~~~~~ 127 (130)
. .+..++ .-+.++ +-+.|. +. +-+.| .+++.|.++|.+..++.|.-+
T Consensus 128 ~i~~~~sv-~~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP 183 (209)
T cd08906 128 YVSAGIST-THSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLP 183 (209)
T ss_pred EEEEEEEE-ecCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCC
Confidence 2 222222 222222 233332 22 33444 456789999999999988543
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.82 E-value=0.51 Score=34.94 Aligned_cols=119 Identities=8% Similarity=0.005 Sum_probs=66.2
Q ss_pred EEEEEEecCCHHHHHHHhhhcCc-ccccccCCceeeEEEEcC-CCCcccEEEEEEe-C-C---CcceeEE-EEEEEEecc
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHN-LLPKIAPQTIKSIDILQG-DGGVGTVKLLKFA-G-G---GDYQQTK-QRIDALDEA 77 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~-~~p~~~P~~v~s~e~~eG-~g~~Gsvr~~~~~-~-g---~~~~~~k-Erl~~~D~~ 77 (130)
+..+..++++++++++.+-|..+ .-++|.+. +.++++++- |+...-++. .++ + + .+...+- ......++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence 56788899999999999976654 12799985 888888864 322222222 222 1 1 1112222 222223333
Q ss_pred ceeEEEEEEecCCCccCeee--------EEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 78 NLTGKYTTYEGDGLLKLAEK--------SVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 78 ~~~~~y~iieg~~~~~~~~~--------y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
...+.+...+-+.++ +-+. +..-++..|.++++|.++|.+..+++|.-|
T Consensus 126 ~i~i~~~sv~h~~~P-~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP 182 (208)
T cd08903 126 TISSNATNVEHPLCP-PQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLP 182 (208)
T ss_pred eEEEeEEeccCCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcC
Confidence 333333333332221 1222 233444455566789999999999987544
No 54
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.79 E-value=0.51 Score=34.71 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=67.7
Q ss_pred EEEEEEecCCHHHHHHHh-hhcCcccccccCCceeeEEEEcCC-CCcccEEEEEEeCC-Cc---ceeEEEEEEEEeccce
Q 036559 6 VEKEVPSAVAPSRLFKAL-NDSHNLLPKIAPQTIKSIDILQGD-GGVGTVKLLKFAGG-GD---YQQTKQRIDALDEANL 79 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~-~d~~~~~p~~~P~~v~s~e~~eG~-g~~Gsvr~~~~~~g-~~---~~~~kErl~~~D~~~~ 79 (130)
+..+..+++||++++..+ .|.+. .++|.+. +..+++++.- +..--+......+. .+ ...+--|....++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 556788999999999755 78887 8999996 7787777542 22111222222221 11 1222223222333333
Q ss_pred eEEEEEEecCCCc--c---CeeeEEEEEEEEecCC--CCeEEEEEEEEEEcCCc
Q 036559 80 TGKYTTYEGDGLL--K---LAEKSVYDIKIVDSGN--GGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 80 ~~~y~iieg~~~~--~---~~~~y~~t~~v~p~~~--g~s~v~w~~~~~~~~~~ 126 (130)
.+...-++=+..+ . ....+.+.+.+.|.++ ++|.++|.+..++.|.-
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i 181 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL 181 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC
Confidence 3322222211111 0 2344567888998764 57999999999988654
No 55
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=95.59 E-value=0.53 Score=33.43 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=40.8
Q ss_pred EEEEEEEecCC--------HHHHHHHh-hhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEe
Q 036559 5 RVEKEVPSAVA--------PSRLFKAL-NDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALD 75 (130)
Q Consensus 5 ~~~~~v~i~ap--------a~~vw~~~-~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D 75 (130)
++++.+.||-| .+++|+-+ ....+ -..++| .+.+|++++.. +..-.|.++|. + ..++|++. +.
T Consensus 1 n~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg--~--~~v~E~v~-~~ 72 (149)
T PF08982_consen 1 NFEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFG--G--ATVRERVT-LY 72 (149)
T ss_dssp EEEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEET--T--EEEEEEEE-EE
T ss_pred CccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEEC--C--cEEEEEEE-Ee
Confidence 35677777766 45799999 22233 235667 48999999654 23567999993 2 37999977 44
Q ss_pred ccceeEEE
Q 036559 76 EANLTGKY 83 (130)
Q Consensus 76 ~~~~~~~y 83 (130)
+.. ++.|
T Consensus 73 ~~~-~V~f 79 (149)
T PF08982_consen 73 PPE-RVDF 79 (149)
T ss_dssp TTT-EEEE
T ss_pred CCc-EEEE
Confidence 444 6666
No 56
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.79 E-value=1.2 Score=32.93 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=69.4
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeC---CCcceeE-E-EEEEEEecc
Q 036559 3 VLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG---GGDYQQT-K-QRIDALDEA 77 (130)
Q Consensus 3 ~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~---g~~~~~~-k-Erl~~~D~~ 77 (130)
+..+..+..+++|++.+.+++.|.+. .|+|.|. ..+.+.++..+..-.+-.+.+.. -..-..+ . -.++.++ +
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-~ 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLNEVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-E 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEehhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-c
Confidence 34677788899999999999999876 9999997 44555554322111222222211 1111111 1 1122232 3
Q ss_pred ceeEEEE--EEecCC---------Cc-c-----CeeeEEEEEEEEecCCCCeEEEEEEEEEEcCC
Q 036559 78 NLTGKYT--TYEGDG---------LL-K-----LAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 78 ~~~~~y~--iieg~~---------~~-~-----~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~ 125 (130)
+..+... -+..+. ++ . ....+.+-+.++|.++++|.+++.+..+|.+.
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~ 186 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMS 186 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcc
Confidence 3333221 111100 11 0 24667888999999999999999999888776
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=94.20 E-value=1.7 Score=32.26 Aligned_cols=120 Identities=9% Similarity=-0.042 Sum_probs=67.4
Q ss_pred EEEEEEEe-cCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCC---CcceeEEEEEEEEecccee
Q 036559 5 RVEKEVPS-AVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGG---GDYQQTKQRIDALDEANLT 80 (130)
Q Consensus 5 ~~~~~v~i-~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g---~~~~~~kErl~~~D~~~~~ 80 (130)
.+..+..+ ++|++.+++++.|... .++|-+. +..+++++--+.--.|..+.+..- .+...+--|...-++....
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVLHDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHHHChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 34555666 6999999999998876 7899996 667777654221123333333211 1122333332222332222
Q ss_pred EEEEEEecCCCc--c---CeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCc
Q 036559 81 GKYTTYEGDGLL--K---LAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 81 ~~y~iieg~~~~--~---~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~ 126 (130)
+...-+.-+..+ . ....+.+-+.+.|.++++|.++|.+..++.|.-
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I 176 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL 176 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc
Confidence 211111111111 0 123456778889988888999999988887753
No 58
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.10 E-value=1.7 Score=31.88 Aligned_cols=119 Identities=9% Similarity=-0.040 Sum_probs=69.2
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeC--C-CcceeEEEEEEEEeccc--e
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG--G-GDYQQTKQRIDALDEAN--L 79 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~--g-~~~~~~kErl~~~D~~~--~ 79 (130)
-+..+..++++++++++.+-|. -++|.+. +.++++++--+.-=.|-...+.. . .+-..+--|....+.++ .
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRILRE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHHHH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 3577888999999999988653 3799986 77888876321101122222211 1 12234444433333333 2
Q ss_pred eEEEEEEec-CCCc-c--CeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 80 TGKYTTYEG-DGLL-K--LAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 80 ~~~y~iieg-~~~~-~--~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
.+..+=++- +..+ . ....+.+-+.++|.++++|.+++.+..++.|.-+
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP 172 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP 172 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence 222222221 1110 0 1345678888999988899999999999987654
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.66 E-value=2.1 Score=31.58 Aligned_cols=117 Identities=11% Similarity=-0.009 Sum_probs=68.5
Q ss_pred EEEEEEEe-cCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCccc-EEEEEEeCC---CcceeEEEEEEEEeccce
Q 036559 5 RVEKEVPS-AVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGT-VKLLKFAGG---GDYQQTKQRIDALDEANL 79 (130)
Q Consensus 5 ~~~~~v~i-~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gs-vr~~~~~~g---~~~~~~kErl~~~D~~~~ 79 (130)
.+..+..+ ++|++.+.+++.|... .++|.+. +.++++++.+...++ |-.+.+..- .+-.++-.|-...|+++.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence 45555656 9999999999999887 8999985 778888875322122 222222211 111345445445666654
Q ss_pred eE---EEEEEe-c----CCCccCeeeEEEEEEEEecC---CCCeEEEEEEEEEEcC
Q 036559 80 TG---KYTTYE-G----DGLLKLAEKSVYDIKIVDSG---NGGSIFKFVEEIHVND 124 (130)
Q Consensus 80 ~~---~y~iie-g----~~~~~~~~~y~~t~~v~p~~---~g~s~v~w~~~~~~~~ 124 (130)
.+ .+++-. . .-.. .+.+|.+.+.+.|.+ +++|.+.+..--+|.|
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~V-Rv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG 178 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKV-RVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV 178 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCE-EEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC
Confidence 32 111210 0 1011 477889999999874 4578777655544443
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=92.85 E-value=2.6 Score=30.37 Aligned_cols=121 Identities=12% Similarity=-0.047 Sum_probs=71.4
Q ss_pred EEEEEEEEecCCHHHHH-HHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCC-Cc---ceeEEEEEEEEe-cc
Q 036559 4 LRVEKEVPSAVAPSRLF-KALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGG-GD---YQQTKQRIDALD-EA 77 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw-~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g-~~---~~~~kErl~~~D-~~ 77 (130)
..+..+..+++++++++ +++.|... .++|.+. +.++++++-...-..|..+.+..- ++ -.++--|-...+ +.
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 35667788999999855 45588887 8999996 778888753211134454443321 12 122222222222 33
Q ss_pred ceeEEEEEEecCCCc---c--CeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCc
Q 036559 78 NLTGKYTTYEGDGLL---K--LAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 78 ~~~~~y~iieg~~~~---~--~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~ 126 (130)
...+..+-+..+-.+ . ....+.+-+.+.|.+++.|.++|....++.|.-
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i 176 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL 176 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc
Confidence 333333222222111 0 234677889999998888999999999888753
No 61
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=92.68 E-value=3.1 Score=30.67 Aligned_cols=120 Identities=12% Similarity=-0.063 Sum_probs=69.9
Q ss_pred EEEEEEEEe-cCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCccc-EEEEEEeC---CCcceeEEEEEEEEe-cc
Q 036559 4 LRVEKEVPS-AVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGT-VKLLKFAG---GGDYQQTKQRIDALD-EA 77 (130)
Q Consensus 4 ~~~~~~v~i-~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gs-vr~~~~~~---g~~~~~~kErl~~~D-~~ 77 (130)
..+..+..+ ++|++.+++++.|... .++|.+. +.++++++-++..|+ |-.+.+.. -.+-.++--|-.-.| +.
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 346667778 6799999999999887 8999996 667777764422121 22222211 112233333323233 33
Q ss_pred ceeEEEEEEecCCCc----cCeeeEEEEEEEEec--CCCCeEEEEEEEEEEcCC
Q 036559 78 NLTGKYTTYEGDGLL----KLAEKSVYDIKIVDS--GNGGSIFKFVEEIHVNDD 125 (130)
Q Consensus 78 ~~~~~y~iieg~~~~----~~~~~y~~t~~v~p~--~~g~s~v~w~~~~~~~~~ 125 (130)
...+...-+.-+..+ -.+..|.+.+.+.|. ++++|.+..+..-++.+.
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~ 181 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG 181 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC
Confidence 333322222211111 147789999999998 667788888877776544
No 62
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=91.17 E-value=4 Score=28.81 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=59.3
Q ss_pred EEEEEEecCCHHHHHHHhhhcCcccc---cccCC---ceeeEEEEcCCCCcccEEEE-EEeC-CCc---------ceeEE
Q 036559 6 VEKEVPSAVAPSRLFKALNDSHNLLP---KIAPQ---TIKSIDILQGDGGVGTVKLL-KFAG-GGD---------YQQTK 68 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d~~~~~p---~~~P~---~v~s~e~~eG~g~~Gsvr~~-~~~~-g~~---------~~~~k 68 (130)
++.++.+++|+++||+++.|..- +. +-+.. .+.+++. +|+| -+++.- .+.. ..| ...+
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y-~~~r~~~~g~~~~~~~~~~~-~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v- 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDY-WEARCAALGADNAEVESFEV-DGDG--VRVTVRQTVPADKLPSAARKFVGGDLRV- 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHH-HHHHHHHcCCCCceEEEEEE-cCCe--EEEEEEEecChhhCCHHHHHhcCCCeEE-
Confidence 46788999999999999965542 21 22211 2333332 2332 112111 1221 111 0122
Q ss_pred EEEEEE---eccceeEEEEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEE
Q 036559 69 QRIDAL---DEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 69 Erl~~~---D~~~~~~~y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~ 122 (130)
+|.+.+ ++..++.+|++--... | -+..+++.+.|.+ ++|.+.++.+...
T Consensus 76 ~~~e~w~~~~~g~~~g~~~~~~~G~---P-~~~~G~~~L~~~~-~gt~~~~~g~v~v 127 (159)
T PF10698_consen 76 TRTETWTPLDDGRRTGTFTVSIPGA---P-VSISGTMRLRPDG-GGTRLTVEGEVKV 127 (159)
T ss_pred EEEEEEecCCCCeEEEEEEEEecCc---e-EEEEEEEEEecCC-CCEEEEEEEEEEE
Confidence 233444 5677777777533221 2 3589999999955 4699999888765
No 63
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=90.60 E-value=5.3 Score=29.22 Aligned_cols=119 Identities=7% Similarity=-0.060 Sum_probs=65.9
Q ss_pred EEEEEEecCCHHHHHHHhhh--cCcccccccCCceeeEEEEcCCCCcccEEEEEEeC-C-C---cceeE-EEEEEEEecc
Q 036559 6 VEKEVPSAVAPSRLFKALND--SHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAG-G-G---DYQQT-KQRIDALDEA 77 (130)
Q Consensus 6 ~~~~v~i~apa~~vw~~~~d--~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~-g-~---~~~~~-kErl~~~D~~ 77 (130)
+..+..++++++++++.+.| ... .++|-+. +.++++++.-+..=.|-...++. . + +..++ .+....+++.
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~ 125 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN 125 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence 66778899999999999977 555 6899985 88889887532111122222211 1 1 11122 2222223332
Q ss_pred ceeEEEEEEecCCCccCee------eEEEEEEEEecC--CCCeEEEEEEEEEEcCCcC
Q 036559 78 NLTGKYTTYEGDGLLKLAE------KSVYDIKIVDSG--NGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 78 ~~~~~y~iieg~~~~~~~~------~y~~t~~v~p~~--~g~s~v~w~~~~~~~~~~~ 127 (130)
...+...-++=+..+ +.+ .+.+-+-+.|.+ +++|.++|.+..++.|.-+
T Consensus 126 ~~~i~~~Sv~hp~~p-~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP 182 (206)
T cd08867 126 QWSSSGKSVDIPERP-PTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIP 182 (206)
T ss_pred eEEEEEEeccCCCCC-CCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCc
Confidence 222332223212111 222 234445667654 4579999999999987643
No 64
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=89.98 E-value=2.6 Score=31.71 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=65.3
Q ss_pred EEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEE--EeCCCcceeEEEEEEEEeccceeEEEEEE
Q 036559 9 EVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLK--FAGGGDYQQTKQRIDALDEANLTGKYTTY 86 (130)
Q Consensus 9 ~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~--~~~g~~~~~~kErl~~~D~~~~~~~y~ii 86 (130)
.-.+..+++.+|+++.+... +.++.| .-++.+++.-+.+-+.+-.++ |++=. +...-++ .+++..++.+- .-
T Consensus 73 rrligysp~~my~vVS~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l~--E~y~S~V-t~~~p~l~kt~-~~ 146 (227)
T KOG3177|consen 73 RRLIGYSPSEMYSVVSNVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPLD--ERYTSNV-TCVKPHLTKTV-CA 146 (227)
T ss_pred HhhhCCCHHHHHHHHHhHHH-hhcccc-ceeccceeecCCCCCceeeEEecCcccc--hhheeee-EEecccceEEe-ec
Confidence 34578999999999977776 667777 566666664431112333333 32111 1222232 35666655432 33
Q ss_pred ecCCCccCeeeEEEEEEEEecC--CCCeEEEEEEEEEEc
Q 036559 87 EGDGLLKLAEKSVYDIKIVDSG--NGGSIFKFVEEIHVN 123 (130)
Q Consensus 87 eg~~~~~~~~~y~~t~~v~p~~--~g~s~v~w~~~~~~~ 123 (130)
+|.+ |......|++.|.. .+.|++...++|+-+
T Consensus 147 d~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~ 181 (227)
T KOG3177|consen 147 DGRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFK 181 (227)
T ss_pred cccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEeh
Confidence 4543 56677899999988 579999999999853
No 65
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=89.11 E-value=7.6 Score=28.91 Aligned_cols=120 Identities=10% Similarity=0.019 Sum_probs=70.1
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcC-CCCcccEEEE-EEe-CCCcceeEEEEEEEEecccee
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQG-DGGVGTVKLL-KFA-GGGDYQQTKQRIDALDEANLT 80 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG-~g~~Gsvr~~-~~~-~g~~~~~~kErl~~~D~~~~~ 80 (130)
..+..+++++++++++...+-|- .++|.+. +.+.++++- +...--+... ..+ +-.+-..+.-|.-..|..+..
T Consensus 52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~ 127 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGA 127 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCe
Confidence 45778899999999999999554 4688886 556666653 2111111111 111 111223444444433444443
Q ss_pred EEEEEE--ecCCCc---cCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 81 GKYTTY--EGDGLL---KLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 81 ~~y~ii--eg~~~~---~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
+..... +-+.++ -....+.+.+.++|.++|+|.++..+..+|.|..+
T Consensus 128 ~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP 179 (204)
T cd08908 128 CALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHMP 179 (204)
T ss_pred EEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCCc
Confidence 322222 111111 02455678889999998999999999999987654
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=83.93 E-value=15 Score=27.09 Aligned_cols=118 Identities=13% Similarity=-0.060 Sum_probs=66.3
Q ss_pred EEEEEEEec-CCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCC---CcceeE-EEEEEEEeccce
Q 036559 5 RVEKEVPSA-VAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGG---GDYQQT-KQRIDALDEANL 79 (130)
Q Consensus 5 ~~~~~v~i~-apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g---~~~~~~-kErl~~~D~~~~ 79 (130)
.+..+..++ ++++.+++++.|... .++|.+... ++.-.+.++. .|-.+.+..- .+-.++ ..+...+|.+..
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~~~-~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~ 125 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLEY-RKQWDQYVK-ELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGR 125 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHHHHH-hheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEeccccCCCC
Confidence 456677787 799999999999887 889998644 4322222221 2333333211 111222 212233444443
Q ss_pred eEEE---EEEecCCCc-----cCeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCc
Q 036559 80 TGKY---TTYEGDGLL-----KLAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 80 ~~~y---~iieg~~~~-----~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~ 126 (130)
.+.. ...+=+-.+ -....|.+.+.+.|.++++|.+.+...-+|.|.-
T Consensus 126 ~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~I 180 (207)
T cd08910 126 KIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMI 180 (207)
T ss_pred eEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcc
Confidence 2111 111110000 0367899999999988888999888888776544
No 67
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=59.48 E-value=61 Score=23.02 Aligned_cols=120 Identities=10% Similarity=0.034 Sum_probs=71.7
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCC--cc---eeEEEEEEEE-ec
Q 036559 3 VLRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGG--DY---QQTKQRIDAL-DE 76 (130)
Q Consensus 3 ~~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~--~~---~~~kErl~~~-D~ 76 (130)
...+.....+++++++++..+.+-.. +|-+. +.++++++--..-..|..+.+..-. +. .++--|.... .+
T Consensus 45 ~~~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 45 IKMFKAEGVVPASPEQVVEDLLDDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED 120 (206)
T ss_dssp CEEEEEEEEESSCHHHHHHHHHCGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred ceEEEEEEEEcCChHHHHHHHHhhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence 34567788999999988888854332 78875 7788888642111456655544322 31 2222222222 33
Q ss_pred cceeEEEEEEecCCCcc------CeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCc
Q 036559 77 ANLTGKYTTYEGDGLLK------LAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDK 126 (130)
Q Consensus 77 ~~~~~~y~iieg~~~~~------~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~ 126 (130)
....+..+=++.+..+. ....+.+.+.+.|.+++.|.|++...-++.+..
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i 176 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI 176 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC
Confidence 33444444333332221 234667888899999988999999988887654
No 68
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=59.21 E-value=52 Score=22.12 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=57.9
Q ss_pred EEEEecCCHHHHHHHhhhcC-cccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEEE
Q 036559 8 KEVPSAVAPSRLFKALNDSH-NLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTY 86 (130)
Q Consensus 8 ~~v~i~apa~~vw~~~~d~~-~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ii 86 (130)
.+..+++||+.+|+.+.+.- .=+.+.-...+..-++ +| .--.=.+..+. ..+=+|.++. .++.|.+++.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G-----~~Y~K~~~~~~---~~~v~It~~~-~~~~Y~~~~~ 72 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KG-----FSYQKKFKNKR---EAKVKITEYE-PNKRYAATFS 72 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CC-----cEEEEEcCCCC---EEEEEEEEEc-CCCEEEEEEE
Confidence 45679999999999994322 1122222221111112 22 11111122222 3444577774 4457777764
Q ss_pred ecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEEEcC
Q 036559 87 EGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIHVND 124 (130)
Q Consensus 87 eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~ 124 (130)
- +...+..+.++.|.++|.|.|+.+=++++.+
T Consensus 73 s------~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 73 S------SRGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred e------cCCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 2 2345888999999999889999988887653
No 69
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=58.07 E-value=62 Score=22.67 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=51.6
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCC--CCcccEEEEEEeCCCcceeEEEEEEEEeccceeEE
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGD--GGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGK 82 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~--g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (130)
.++.++..+-+.+.+-.+++|+.-++|+++|. ++++.. +++ .+-| + | ++-.-.++=++ -+-..+=+|.
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~-ik~v~~-~~~sF~~~g--~---~--~~~~~~~~G~v-y~s~~~ItYv 71 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFPP-IKSVKV-EENSFRAEG--K---F--GGFPFEMKGNV-YVSSNEITYV 71 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHSTT-EEEEE--STTEEEEEE--E---E--TTEEEEEEEEE-EEETTEEEEE
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCCc-eEEEEe-cCCEEEEEE--E---E--eeEEEEEEEEE-EEccceEEEE
Confidence 35677888888999999999999989999994 899984 443 1111 1 1 11001222232 2333455666
Q ss_pred EEEEecCCCccCeeeEEEEEEEEecCCCCeEEEEEEEEE
Q 036559 83 YTTYEGDGLLKLAEKSVYDIKIVDSGNGGSIFKFVEEIH 121 (130)
Q Consensus 83 y~iieg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~~~ 121 (130)
+.+..|... .+ +.+.+... + ..|+...+|+
T Consensus 72 f~~~~g~~~----g~--GkL~i~~~-~--~~i~l~~eye 101 (136)
T PF11485_consen 72 FNLAGGGPN----GN--GKLTIQLE-N--GKIKLIFEYE 101 (136)
T ss_dssp EE----ETT----EE--EEEEEEEE-T--TEEEEEEEES
T ss_pred EEeeccCCC----Cc--EEEEEEec-C--CEEEEEEEcc
Confidence 666666432 22 34444432 2 2667777775
No 70
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=55.01 E-value=22 Score=26.15 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=40.4
Q ss_pred ecCCHHHHHHHhhhcCcccccccCCceeeEEEEcCCCCcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEEEecCC
Q 036559 12 SAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90 (130)
Q Consensus 12 i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iieg~~ 90 (130)
++++..|+|+ |.++ -+..-|..| .+.|.. +|.. ....+++..+..-.+.=+-|-.+|+....+.|++-|-++
T Consensus 3 ~~i~v~K~W~---d~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 3 VNLSGTKIWD---DYDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEEC---CCCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecC
Confidence 4556667776 3333 234455544 466663 2221 345566655543222234566677788889999988764
No 71
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=48.85 E-value=1.1e+02 Score=22.68 Aligned_cols=118 Identities=8% Similarity=-0.042 Sum_probs=66.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEcC-CCCcccEEEEEEeC-C-C---cceeEEEEE-EEEecc
Q 036559 5 RVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQG-DGGVGTVKLLKFAG-G-G---DYQQTKQRI-DALDEA 77 (130)
Q Consensus 5 ~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG-~g~~Gsvr~~~~~~-g-~---~~~~~kErl-~~~D~~ 77 (130)
-+..+..++++++++|+.+.+... -.+|-+ .+..++++|- |... .|-...+.+ + + +...+--|- ..+++.
T Consensus 47 l~k~egvi~~~~e~v~~~l~~~e~-r~~Wd~-~~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~ 123 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFMYQPEH-RIKWDK-SLQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFVDLVHIKRYEGN 123 (204)
T ss_pred EEEEEEEecCCHHHHHHHHhccch-hhhhcc-cccceeeEEEeCCCc-EEEEEecccccCCcccCceEEEEEEEEEeCCC
Confidence 356678899999999999977666 689999 5888888863 2111 122222221 1 1 222222222 123444
Q ss_pred ceeEEEEEEecCCCccCeeeE------EEEEEEEecCCC--CeEEEEEEEEEEcCCc
Q 036559 78 NLTGKYTTYEGDGLLKLAEKS------VYDIKIVDSGNG--GSIFKFVEEIHVNDDK 126 (130)
Q Consensus 78 ~~~~~y~iieg~~~~~~~~~y------~~t~~v~p~~~g--~s~v~w~~~~~~~~~~ 126 (130)
...+.+.-++=+-.+ |-+.| .+=+-+.|..++ +|.+.|-+..+++|.-
T Consensus 124 ~~ii~~~sv~Hp~~P-p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~l 179 (204)
T cd08904 124 MNIVSSVSVEYPQCP-PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNL 179 (204)
T ss_pred EEEEEEEecccCCCC-CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCC
Confidence 433333333322222 33333 344567787654 7999999998887643
No 72
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=43.93 E-value=1.2e+02 Score=26.96 Aligned_cols=75 Identities=8% Similarity=0.131 Sum_probs=39.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhh--cCcccccccCCceeeEEEEcCC-----CCcccEEEEEEeCCCcceeEEEEEEEEec
Q 036559 4 LRVEKEVPSAVAPSRLFKALND--SHNLLPKIAPQTIKSIDILQGD-----GGVGTVKLLKFAGGGDYQQTKQRIDALDE 76 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d--~~~~~p~~~P~~v~s~e~~eG~-----g~~Gsvr~~~~~~g~~~~~~kErl~~~D~ 76 (130)
.++....-+.++|||-=++.++ .-+.| +-|-+.|..+-++.+. +.-|.||.|.+.++ .+.|. .-.
T Consensus 147 ~~l~e~~~vTgsaDKtIklWk~~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~~---~gh 218 (745)
T KOG0301|consen 147 ASLPENTYVTGSADKTIKLWKGGTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLEM---HGH 218 (745)
T ss_pred eecCCCcEEeccCcceeeeccCCchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeeee---ecc
Confidence 3444445567777765444432 11112 2244455555555431 23488999998433 33332 446
Q ss_pred cceeEEEEEE
Q 036559 77 ANLTGKYTTY 86 (130)
Q Consensus 77 ~~~~~~y~ii 86 (130)
.++.|++++.
T Consensus 219 tn~vYsis~~ 228 (745)
T KOG0301|consen 219 TNFVYSISMA 228 (745)
T ss_pred ceEEEEEEec
Confidence 6777777643
No 73
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=38.29 E-value=28 Score=22.56 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=22.8
Q ss_pred ccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEEEec
Q 036559 51 GTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEG 88 (130)
Q Consensus 51 Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iieg 88 (130)
|-.+.+++.+|. |+|.+|.+++.+ |++=-.
T Consensus 26 g~~kEf~lpsGk-------R~D~id~~~k~I-yELKPn 55 (89)
T PF15650_consen 26 GREKEFRLPSGK-------RPDFIDFETKII-YELKPN 55 (89)
T ss_pred cceeeeecCCCC-------cCccccCCcceE-EEecCC
Confidence 567888888774 999999999654 877433
No 74
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=33.29 E-value=1.3e+02 Score=19.40 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=27.3
Q ss_pred cccccCCceeeEEEEcCCCCcccEEEEEEeCCCc---ceeEEEEEEEEeccceeE
Q 036559 30 LPKIAPQTIKSIDILQGDGGVGTVKLLKFAGGGD---YQQTKQRIDALDEANLTG 81 (130)
Q Consensus 30 ~p~~~P~~v~s~e~~eG~g~~Gsvr~~~~~~g~~---~~~~kErl~~~D~~~~~~ 81 (130)
.|+|-++-.+.+.+.+|+ +.+-.+.-+.|-| ..|+++....++. +.++
T Consensus 2 ~~~~~~~~~~~v~V~eG~---~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri 52 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGD---SVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERV 52 (95)
T ss_pred CCcCCccccceeEEecCC---CEEEEecCCCCCCCCEEEEECCCCccccc-cccE
Confidence 356666666778888887 3444444344543 4677766554443 3443
No 75
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.76 E-value=1.3e+02 Score=24.29 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=13.1
Q ss_pred ecCCCCeEEEEEEEEEE
Q 036559 106 DSGNGGSIFKFVEEIHV 122 (130)
Q Consensus 106 p~~~g~s~v~w~~~~~~ 122 (130)
..|++||+--|++.|..
T Consensus 305 StGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYNN 321 (361)
T ss_pred ecCCCceeeehhhhhhh
Confidence 45667899999988753
No 76
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=31.34 E-value=2.2e+02 Score=21.15 Aligned_cols=119 Identities=12% Similarity=-0.018 Sum_probs=64.6
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCcccccccCCceeeEEEEc-CCCC--cccEEEEEEeC-CCcceeEEEEEEEEeccce
Q 036559 4 LRVEKEVPSAVAPSRLFKALNDSHNLLPKIAPQTIKSIDILQ-GDGG--VGTVKLLKFAG-GGDYQQTKQRIDALDEANL 79 (130)
Q Consensus 4 ~~~~~~v~i~apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~e-G~g~--~Gsvr~~~~~~-g~~~~~~kErl~~~D~~~~ 79 (130)
..+..+++++++++.|-..+-+ . .+.|-..+. +.++++ -|+. ++- ..++... -.+..++--|--..|.+..
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~--~-R~~WD~~~~-~~~~ie~ld~~tdi~~-y~~~~~~P~~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLR--E-RHLWDEDFL-QWKVVETLDKQTEVYQ-YVLNCMAPHPSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHh--h-HhhHHhhcc-eeEEEEEeCCCcEEEE-EEeecCCCCCCCEEEEEEEEEEeCCCC
Confidence 4566788999999999888754 3 468887644 444443 3421 111 1111111 1112344444333343222
Q ss_pred --eEEEEEEecCCCc-c---CeeeEEEEEEEEecCCCCeEEEEEEEEEEcCCcC
Q 036559 80 --TGKYTTYEGDGLL-K---LAEKSVYDIKIVDSGNGGSIFKFVEEIHVNDDKL 127 (130)
Q Consensus 80 --~~~y~iieg~~~~-~---~~~~y~~t~~v~p~~~g~s~v~w~~~~~~~~~~~ 127 (130)
.+.+.=++..--+ . ....+.+-+-+.|.++|+|.+++-+..+++|..+
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~~P 180 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGHSP 180 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCCCh
Confidence 2222222222110 0 1233456678899998899999999999887543
No 77
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=29.67 E-value=2.5e+02 Score=21.17 Aligned_cols=40 Identities=5% Similarity=0.075 Sum_probs=32.4
Q ss_pred EEEEEEEec-CCHHHHHHHhhhcCcccccccCCceeeEEEEcC
Q 036559 5 RVEKEVPSA-VAPSRLFKALNDSHNLLPKIAPQTIKSIDILQG 46 (130)
Q Consensus 5 ~~~~~v~i~-apa~~vw~~~~d~~~~~p~~~P~~v~s~e~~eG 46 (130)
.+..+..++ ++++.+.+.+-|... .++|... +.+.++++-
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~~~-r~~Wd~~-~~~~~vie~ 93 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDPDV-RMDWETT-LENFHVVET 93 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhChhh-HHHHHhh-hheeEEEEe
Confidence 356666777 999999999999887 8899985 888887754
No 78
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=28.48 E-value=1.5e+02 Score=19.41 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.8
Q ss_pred EEEEEEEEeccceeEEEEEEecCC
Q 036559 67 TKQRIDALDEANLTGKYTTYEGDG 90 (130)
Q Consensus 67 ~kErl~~~D~~~~~~~y~iieg~~ 90 (130)
..|| -+|..+|+|+|.-+.|-.
T Consensus 34 ~DeR--YId~~~RtYtw~PI~gT~ 55 (94)
T PF08473_consen 34 QDER--YIDEVNRTYTWTPINGTD 55 (94)
T ss_pred ccce--eeeeeceeEEEeccCCCc
Confidence 4466 588999999999998863
No 79
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=28.30 E-value=1.2e+02 Score=22.52 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=26.4
Q ss_pred EEEEEeCCCcceeEEEEEEEEeccceeEEEEEEecCC
Q 036559 54 KLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDG 90 (130)
Q Consensus 54 r~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iieg~~ 90 (130)
-.++|..| ....++++...+|..+.-.--..++|.+
T Consensus 92 s~v~F~tG-e~l~itq~~~GlD~~~~L~~d~~i~G~v 127 (192)
T PF07474_consen 92 SEVEFATG-ERLTITQTARGLDSDGYLLLDTVISGQV 127 (192)
T ss_dssp EEEEESSS---EEEEEEEEEE-TTS-EEEEEEEEEEE
T ss_pred EEEEEeCC-CEEEEEEEecccCCCCcEEEEEEEeccC
Confidence 44788777 5578999999999999877777888875
No 80
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=23.97 E-value=1.8e+02 Score=17.68 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=7.0
Q ss_pred eeEEEEEEEEec
Q 036559 96 EKSVYDIKIVDS 107 (130)
Q Consensus 96 ~~y~~t~~v~p~ 107 (130)
..|.-++.+...
T Consensus 65 ~~y~l~v~a~D~ 76 (93)
T PF00028_consen 65 SSYQLTVRATDS 76 (93)
T ss_dssp SEEEEEEEEEET
T ss_pred CEEEEEEEEEEC
Confidence 456666666555
No 81
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=22.69 E-value=2e+02 Score=21.87 Aligned_cols=78 Identities=15% Similarity=0.005 Sum_probs=47.6
Q ss_pred EecCCHHHHHHHh--hhcCcccccccCCceeeEEEEcCC---C-CcccEEEEEEeCCCcceeEEEEEEEEeccceeEEEE
Q 036559 11 PSAVAPSRLFKAL--NDSHNLLPKIAPQTIKSIDILQGD---G-GVGTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYT 84 (130)
Q Consensus 11 ~i~apa~~vw~~~--~d~~~~~p~~~P~~v~s~e~~eG~---g-~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (130)
.+++|++--|.+. .-....+ -|+. +...-....|- | ..=..-.++|.+|+..-.+++....+|..++-.-=.
T Consensus 43 is~ip~~~G~~L~~l~~ig~~i-gWlF-A~e~~~~~NGfslTGG~F~~~~~v~F~~~ge~l~I~Q~~~GlD~~~~L~~~~ 120 (224)
T cd00255 43 ISNIPESLGPSLRPLAPIGGTI-GWLF-ALEQGGAKNGFSLTGGEFTRQAEVTFYTGGEKLRITQVARGLDSHGHLLLDT 120 (224)
T ss_pred EecCChHhchhhhhhhhhcCce-eeEE-EeecCCccCcEeccCceEEEEEEEEEcCCCEEEEEEEEEeccCccCeEEEEE
Confidence 4477777777765 4445523 4553 12221111121 1 111234578888777778999999999999887777
Q ss_pred EEecCC
Q 036559 85 TYEGDG 90 (130)
Q Consensus 85 iieg~~ 90 (130)
.++|.+
T Consensus 121 ~i~G~v 126 (224)
T cd00255 121 VISGRV 126 (224)
T ss_pred EEEeec
Confidence 888876
No 82
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=21.75 E-value=2e+02 Score=19.28 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHHHh-hhcCcccccccCCceeeEEEEcCCCCcccEE
Q 036559 16 PSRLFKAL-NDSHNLLPKIAPQTIKSIDILQGDGGVGTVK 54 (130)
Q Consensus 16 a~~vw~~~-~d~~~~~p~~~P~~v~s~e~~eG~g~~Gsvr 54 (130)
-+.+|+++ .||.. +.-|. =-.+++.+....+|.|+
T Consensus 55 f~~~WqaVl~~f~~---r~~~~-~~~i~InD~GATP~VV~ 90 (105)
T PRK02103 55 FGAVWQAVVADFVE---RRSPG-GLRISINDGGARPDTVS 90 (105)
T ss_pred cHHHHHHHHHHHHh---hCCCC-ccEEEEeCCCCCchhhh
Confidence 46899999 77776 22222 23677766655666554
No 83
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=21.40 E-value=1.5e+02 Score=21.27 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=31.6
Q ss_pred ccEEEEEEeCCCcceeEEEEEEEEeccceeEEEEEEecCCCccCeeeEEEEEEEEecCC--CCeEEEEE-EEEEEcC
Q 036559 51 GTVKLLKFAGGGDYQQTKQRIDALDEANLTGKYTTYEGDGLLKLAEKSVYDIKIVDSGN--GGSIFKFV-EEIHVND 124 (130)
Q Consensus 51 Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~y~~t~~v~p~~~--g~s~v~w~-~~~~~~~ 124 (130)
|..+.|.++-|-+ .--.++..++--+.|-+.|.-+||.+ |.++ +|+++.|- .+|++.+
T Consensus 50 GVL~SWAvPkGPs-~dp~~kRLAv~~EDHpl~Y~~FEG~I---------------P~g~YGaG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 50 GVLKSWAVPKGPS-LDPADKRLAVHVEDHPLDYADFEGTI---------------PKGEYGAGTVIVWDRGTWEPEG 110 (156)
T ss_pred CeEEEeEcCcCCC-CCcccceeeeEccCccchhccccccc---------------cCCccCCccEEEEeCceEEeCC
Confidence 5678888776632 11122333454555555555555543 4443 46888886 5666654
Done!