BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036560
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RDD7|BROX_PONAB BRO1 domain-containing protein BROX OS=Pongo abelii GN=BROX PE=2
SV=1
Length = 411
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 74 LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
++ A + Y +LL G + +E+ L + FKW + G+ + ++ FEL+S+
Sbjct: 57 MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 115
Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
+A+ A+ L ++ ++ D +E L A+G + ++ HIP
Sbjct: 116 FNVALWHTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HIP- 163
Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
K++ P +DL+ ++EA IQ + E+ + A++ + A + LA E +Y
Sbjct: 164 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 220
Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
+A LS + Y K ++ K A AY YHG L DK E A+
Sbjct: 221 QKADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 272
Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
AE++ A+++ C + + P T P + L + + + G++
Sbjct: 273 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 331
Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
Q +P E P +L + P +E P W E
Sbjct: 332 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSAQWTPE 368
>sp|Q22885|BROX_CAEEL BRO1 domain-containing protein BROX homolog OS=Caenorhabditis
elegans GN=B0507.2 PE=3 SV=2
Length = 427
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 155/383 (40%), Gaps = 55/383 (14%)
Query: 40 LKGVIPKELVDRLTC---LRNQIVLVAEDTDGSAITELRRALEEYLTLLIG--------- 87
LKGV+ + ++ LR ++ + + E+ + EYL L G
Sbjct: 20 LKGVLTTDTCSKICGELRLRRDKLVSQFKNASNDLEEVTKEFNEYLRLFAGFLIEIQSSM 79
Query: 88 --LTKKENGLED-----LVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANS 140
L K+ G ++ L+ FKW N + V+++WFE LS++ MAM A S
Sbjct: 80 VELENKDAGNKNSKLIPLIRFKWGN-SMLPQAATEVSDTWFEALSMIQCMAMWLTKHAAS 138
Query: 141 LMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDG 200
M KD V SD K E + L +A G ++ +K+ + ++ D
Sbjct: 139 -MAGKD------EVRESDAK-ECLQCLRQAGGMFQY-VKDESSRLSGANEVE-GSDFDPK 188
Query: 201 VLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYG 260
V+E + A + E+ + A++ K + LA +S+A QCL+
Sbjct: 189 VMETYILTATAEAQEVIVARAIE-MKHDDGLISSLAAVTASIFSKADQCLNNLPDES--- 244
Query: 261 KKHLWFIKW-KFLQAKAA---AYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKAC 316
F +W ++LQ K AY + L + +E C + C E + A
Sbjct: 245 -----FARWRRYLQLKHHFYLAYAFAFLGQKQLSEDKCGEAVRACKQGIAEYGVAKEMAA 299
Query: 317 LTFSLAPPTTRSPPLWGAMKHL-HQTIPEVASR---KSQMYGYLLEEEKALQALPEL--- 369
+ + P TR P +HL + I + +R K++ + +K +P+L
Sbjct: 300 MYATATGPGTRIKP----EQHLFFRRIEPLLNRHLEKAERENGFIYHQKVPDEIPQLDVE 355
Query: 370 PNFQLSLRPDNYELPEIDQAWNT 392
+ L+ + D++ P ++WNT
Sbjct: 356 ATYGLA-KLDSFTYPPPAESWNT 377
>sp|Q5VW32|BROX_HUMAN BRO1 domain-containing protein BROX OS=Homo sapiens GN=BROX PE=1
SV=1
Length = 411
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 74 LRRALEEYLTLLIGL------TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVV 127
++ A + Y +LL G + +E+ L + FKW + G+ + ++ FEL+S+
Sbjct: 57 MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQ-GQVPSAQQDAVFELISMG 115
Query: 128 HMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPP 187
+A+ A+ L ++ ++ D +E L A+G + ++ H+P
Sbjct: 116 FNVALWYTKYASRLAGKEN--------ITEDEAKEVHRSLKIAAGIFKHLKES---HLP- 163
Query: 188 DIKIMLP----KDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYY 243
K++ P +DL+ ++EA IQ + E+ + A++ + A + LA E +Y
Sbjct: 164 --KLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFY 220
Query: 244 SQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLIL---DKGNEPSCHVSAVC 300
+A LS + Y K ++ K A AY YHG L DK E A+
Sbjct: 221 QKADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE------AIR 272
Query: 301 CFLAAEEILAESKKACLTF--SLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLE 358
AE++ A+++ C + + P T P + L + + + G++
Sbjct: 273 SLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY- 331
Query: 359 EEKALQALP-ELPNFQLS-----LRPDNYELPEIDQAWNTE 393
Q +P E P +L + P +E P W E
Sbjct: 332 ----FQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPE 368
>sp|Q5KU05|PALA_ASPOR pH-response regulator protein palA/RIM20 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=palA PE=3 SV=2
Length = 828
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 99 VEFKWKNLGDYGKQEAFVANS-WFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRV--L 155
VEF W + N+ FEL +++ + L +S LA V
Sbjct: 85 VEFPWYPAFGFNTSRPISQNNIRFELANILFNLVAL-------------YSQLAFSVNRT 131
Query: 156 SSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTE 215
+ D ++A + L +A+G L +I+ PD++ P+D+ D L+++ L QG E
Sbjct: 132 TPDGLKQACNYLCQAAGVLAHLRADIL----PDLRASPPEDMDDMTLQSLEQLLLAQGQE 187
Query: 216 IQLGLAVDCQKATLSVKRRLACELLIYYSQA 246
AV S+ RLA ++ +Y++
Sbjct: 188 CFWQKAVKDGLKDASIA-RLAAKVSDFYAEG 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,439,247
Number of Sequences: 539616
Number of extensions: 6364241
Number of successful extensions: 15120
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15120
Number of HSP's gapped (non-prelim): 12
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)