Query 036560
Match_columns 420
No_of_seqs 223 out of 470
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09246 BRO1_Alix_like_1 Prote 100.0 1.1E-72 2.5E-77 570.3 33.5 324 22-380 1-341 (353)
2 cd09239 BRO1_HD-PTP_like Prote 100.0 1.6E-72 3.4E-77 569.9 32.5 324 21-383 7-350 (361)
3 cd09240 BRO1_Alix Protein-inte 100.0 2.9E-72 6.3E-77 566.1 34.1 322 21-381 2-344 (346)
4 cd09241 BRO1_ScRim20-like Prot 100.0 7.6E-72 1.6E-76 565.0 33.5 318 21-381 1-331 (355)
5 cd09242 BRO1_ScBro1_like Prote 100.0 1.2E-71 2.6E-76 562.0 33.1 326 22-380 1-344 (348)
6 cd09243 BRO1_Brox_like Protein 100.0 1.4E-70 3E-75 552.2 34.6 333 26-381 6-353 (353)
7 cd09244 BRO1_Rhophilin Protein 100.0 4.1E-70 8.9E-75 547.8 31.5 301 22-359 1-321 (350)
8 cd09034 BRO1_Alix_like Protein 100.0 1.1E-65 2.4E-70 517.5 33.9 321 22-374 1-339 (345)
9 cd09248 BRO1_Rhophilin_1 Prote 100.0 1.4E-64 2.9E-69 508.7 29.4 307 22-366 1-361 (384)
10 PF03097 BRO1: BRO1-like domai 100.0 1.3E-63 2.7E-68 508.1 28.1 321 21-379 1-333 (377)
11 cd09249 BRO1_Rhophilin_2 Prote 100.0 4.8E-60 1E-64 475.4 29.8 238 22-288 1-255 (385)
12 cd09245 BRO1_UmRIM23-like Prot 100.0 6.3E-56 1.4E-60 454.9 32.0 352 29-385 7-412 (413)
13 cd09247 BRO1_Alix_like_2 Prote 100.0 7.3E-55 1.6E-59 439.6 29.2 323 30-382 7-345 (346)
14 KOG2220 Predicted signal trans 100.0 8.7E-50 1.9E-54 431.3 26.4 317 23-383 6-335 (714)
15 KOG2220 Predicted signal trans 98.6 2.6E-07 5.7E-12 101.5 12.2 171 21-219 100-282 (714)
16 KOG4626 O-linked N-acetylgluco 72.4 12 0.00027 41.1 7.5 86 96-211 214-329 (966)
17 PF00515 TPR_1: Tetratricopept 72.3 4.3 9.4E-05 26.0 2.7 30 276-308 1-30 (34)
18 cd02682 MIT_AAA_Arch MIT: doma 69.4 25 0.00053 28.1 6.8 38 275-315 5-42 (75)
19 cd02679 MIT_spastin MIT: domai 68.0 26 0.00057 28.1 6.8 70 270-348 2-71 (79)
20 PF07719 TPR_2: Tetratricopept 67.3 6.4 0.00014 24.9 2.7 30 276-308 1-30 (34)
21 cd02681 MIT_calpain7_1 MIT: do 66.7 27 0.00058 27.8 6.6 66 275-355 5-70 (76)
22 KOG4642 Chaperone-dependent E3 63.8 11 0.00025 36.8 4.7 34 276-312 78-111 (284)
23 PF04212 MIT: MIT (microtubule 61.2 32 0.0007 26.2 6.1 61 275-351 4-64 (69)
24 cd02678 MIT_VPS4 MIT: domain c 56.0 43 0.00094 26.1 6.1 65 275-355 5-69 (75)
25 cd02683 MIT_1 MIT: domain cont 55.9 42 0.00092 26.6 6.0 64 275-354 5-68 (77)
26 KOG1586 Protein required for f 55.7 2.1E+02 0.0046 28.1 12.8 18 158-175 128-145 (288)
27 smart00745 MIT Microtubule Int 49.2 63 0.0014 25.0 6.1 39 273-314 5-43 (77)
28 KOG2460 Signal recognition par 48.8 1.4E+02 0.0029 32.5 10.0 79 239-320 383-463 (593)
29 PRK12370 invasion protein regu 46.8 2.8E+02 0.006 29.9 12.6 30 22-57 124-153 (553)
30 KOG2002 TPR-containing nuclear 46.7 48 0.001 38.2 6.6 49 125-181 751-799 (1018)
31 KOG0553 TPR repeat-containing 46.7 1.8E+02 0.0038 29.4 9.9 29 276-307 149-177 (304)
32 cd02656 MIT MIT: domain contai 41.7 96 0.0021 23.9 6.0 65 275-355 5-69 (75)
33 smart00671 SEL1 Sel1-like repe 37.1 55 0.0012 20.7 3.4 17 156-172 17-33 (36)
34 PF06989 BAALC_N: BAALC N-term 36.3 16 0.00034 26.5 0.6 10 1-10 1-10 (53)
35 PF13181 TPR_8: Tetratricopept 35.9 42 0.0009 21.1 2.6 29 277-308 2-30 (34)
36 PF13424 TPR_12: Tetratricopep 35.1 1.6E+02 0.0034 22.2 6.3 32 276-310 46-77 (78)
37 PF14938 SNAP: Soluble NSF att 34.2 2E+02 0.0043 28.0 8.3 40 118-176 28-67 (282)
38 PF13424 TPR_12: Tetratricopep 33.6 1.3E+02 0.0029 22.6 5.6 36 120-175 42-77 (78)
39 PF08238 Sel1: Sel1 repeat; I 33.1 90 0.002 20.1 4.0 17 156-172 20-36 (39)
40 KOG2041 WD40 repeat protein [G 32.6 8E+02 0.017 28.1 14.2 81 196-283 853-936 (1189)
41 PF15506 OCC1: OCC1 family 31.3 26 0.00056 26.1 1.1 7 1-7 1-7 (62)
42 cd02684 MIT_2 MIT: domain cont 30.6 1.9E+02 0.0041 22.7 6.1 66 275-356 5-70 (75)
43 cd02677 MIT_SNX15 MIT: domain 30.3 2E+02 0.0043 22.7 6.1 64 274-353 4-67 (75)
44 PF02071 NSF: Aromatic-di-Alan 30.1 22 0.00047 18.5 0.4 12 163-174 1-12 (12)
45 smart00028 TPR Tetratricopepti 29.5 35 0.00076 19.4 1.4 27 278-307 3-29 (34)
46 PF13414 TPR_11: TPR repeat; P 25.7 64 0.0014 23.6 2.5 30 276-308 3-32 (69)
47 PF13176 TPR_7: Tetratricopept 24.0 99 0.0021 20.2 2.9 27 279-308 2-28 (36)
48 KOG2997 F-box protein FBX9 [Ge 23.8 1.4E+02 0.0031 30.4 5.1 38 273-313 16-53 (366)
49 PF14853 Fis1_TPR_C: Fis1 C-te 23.2 3.1E+02 0.0067 20.1 5.9 13 271-283 3-15 (53)
50 PF04783 DUF630: Protein of un 22.9 35 0.00076 26.0 0.6 7 1-7 1-7 (60)
51 PF13374 TPR_10: Tetratricopep 22.8 1E+02 0.0023 19.8 2.9 31 277-310 3-33 (42)
52 KOG2709 Uncharacterized conser 21.8 2.5E+02 0.0054 29.8 6.5 76 265-347 11-86 (560)
53 TIGR02552 LcrH_SycD type III s 20.9 4E+02 0.0086 21.9 6.8 16 292-307 98-113 (135)
54 PF08629 PDE8: PDE8 phosphodie 20.7 44 0.00095 24.3 0.6 11 1-11 1-13 (52)
No 1
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=100.00 E-value=1.1e-72 Score=570.31 Aligned_cols=324 Identities=20% Similarity=0.223 Sum_probs=290.9
Q ss_pred eeeecCCCCCCCCCchHHHhhhhHHHH-----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560 22 VVYVPAIRIPLQSDLPRALKGVIPKEL-----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK 90 (420)
Q Consensus 22 ~l~iPglK~t~~vD~~~~L~~~I~~~y-----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~ 90 (420)
+|.|| +|+|.+|||.+||++||.++| |.+|++||+++++..+++ ...++.|.+||.||++|+.
T Consensus 1 ~l~ip-~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~~LR~~~~~~~~~~-----~~~~~~l~~Yy~~L~~l~~ 74 (353)
T cd09246 1 MLSIH-RKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQQLRSEVRTLQEKH-----AASRELLLRYYRALCAVES 74 (353)
T ss_pred CCCCC-CCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHHHHHHHc
Confidence 57899 999999999999999999998 899999999998765432 1227899999999999999
Q ss_pred ccCCC----CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHH
Q 036560 91 KENGL----EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDL 166 (420)
Q Consensus 91 kfp~~----~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~ 166 (420)
|||.. +.+|.|+|+|+|++ +.+++++|+.||++|||||+|+| |||+ |+.++|.++||+|+||++
T Consensus 75 rfp~~~~~~~~~v~F~W~d~~~~-~~~~~~~sl~fEka~vlfNiaal-~s~~----------a~~~~~~~~~glK~A~~~ 142 (353)
T cd09246 75 RFPISEESGHARVSFSWYDAFRP-HRKATQANVHFEKAAVLFNLGAL-SSQL----------GLQQDRTTAEGIKQACHA 142 (353)
T ss_pred cCCCCcccccccceeEeeccCCC-CcceeecchHHHHHHHHHHHHHH-HHHH----------HHhcCCCChHHHHHHHHH
Confidence 99953 46899999999988 47899999999999999999999 9999 888999999999999999
Q ss_pred HHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHH
Q 036560 167 LLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQA 246 (420)
Q Consensus 167 fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A 246 (420)
||+|||+|+||++++++.+. ..+++||++++|.+|+.+||||||||+|+||+.++ +++++|||||.||+++|++|
T Consensus 143 fq~AAG~F~~l~e~~~~~~~----~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~~-~k~sliAKLa~qv~~~Y~~a 217 (353)
T cd09246 143 FQAAAGAFAHLRDKVSGKTG----GFRTPDLTAECLGMLESLMLAQAQECFYEKAVADG-KSPAVCSKLAKQARSYYEEA 217 (353)
T ss_pred HHHHHHHHHHHHHhcccccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH
Confidence 99999999999999987652 35688999999999999999999999999999984 89999999999999999999
Q ss_pred HHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 036560 247 YQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTT 326 (420)
Q Consensus 247 ~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~ 326 (420)
.+.+++.++.+.+++.|+.|+++|..||+|+||||+|..+.+ +++||++|+||+.|.+.++++.+..+.+.
T Consensus 218 ~~~l~~~~~~~~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~k~~~~~~------ 288 (353)
T cd09246 218 LEALDSPPLKGHFDKSWVAHVQLKAAYFRAEALYRAAKDLHE---KEDIGEEIARLRAASDALAEARKQAKGVN------ 288 (353)
T ss_pred HHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hcchHHHHHHHHHHHHHHHHHHHHhhcCC------
Confidence 999998778888999999999999999999999999999999 99999999999999999999988755321
Q ss_pred CCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCC
Q 036560 327 RSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDN 380 (420)
Q Consensus 327 ~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~ 380 (420)
.+.....++.+.+.|.+.+.+++||||+|||+ +||+ ++|+++.-.| ++|.|
T Consensus 289 -~~~~~~~~~~l~~~v~~~l~~aekdNd~IY~~-~VP~~~~Lp~i~~~~~-vk~i~ 341 (353)
T cd09246 289 -GDELIEAVSELEQVINELLERAEKENDCVYLD-RVPAPSDLPPLGAASM-VKPAA 341 (353)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-CCCCcccCCCCCCccc-ccCCC
Confidence 11355678899999999999999999999998 8886 7777777777 47665
No 2
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=100.00 E-value=1.6e-72 Score=569.89 Aligned_cols=324 Identities=16% Similarity=0.128 Sum_probs=285.9
Q ss_pred ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560 21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK 90 (420)
Q Consensus 21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~ 90 (420)
|||.|| +|+|.+|||..+|++||.++| +++|++||++++....+ ..+ ++.|.+||.||+.|+.
T Consensus 7 p~l~ip-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~LR~~~~~~~~~----~~~--~~~l~~Yy~qL~~l~~ 79 (361)
T cd09239 7 PMLWLQ-LKSSGEFTFQPALKKYILENYGEDPELYSEELKSLEQLRQEAVNPPRD----FEG--CSVLKRYYGQLHLLQS 79 (361)
T ss_pred CccccC-CCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccCCCC----hHH--HHHHHHHHHHHHHHHh
Confidence 689999 999999999999999999999 99999999998764322 122 7899999999999999
Q ss_pred ccCCC---CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHH
Q 036560 91 KENGL---EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLL 167 (420)
Q Consensus 91 kfp~~---~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~f 167 (420)
|||.. ..+|.|+|+|+|++ .+++++|+.||++|||||||+| |||+ |+.++|.++||+|+||.+|
T Consensus 80 rfp~~~~~~~~v~F~W~d~~~~--~~~~~~~l~fEka~vlfNigal-~sq~----------a~~~~r~~~~glK~A~~~f 146 (361)
T cd09239 80 RFPMGAGQEAAVPFTWTDIFSG--SEVTHEDIKFEEASVLYNIGAL-HSQL----------GASDKRDSEEGMKVACTHF 146 (361)
T ss_pred cCCCCccccccceeeeecccCC--CchhhhhHHHHHHHHHHHHHHH-HHHH----------HHhccCCChHHHHHHHHHH
Confidence 99943 35799999999986 6889999999999999999999 9999 8899999999999999999
Q ss_pred HHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 036560 168 LKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAY 247 (420)
Q Consensus 168 q~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~ 247 (420)
|+|||+|+||++++++.. .++||++++|.+|..+||||||||+|+||+.++ +|++||||||+|++++|++|+
T Consensus 147 q~AAG~F~~l~e~~~~~~-------~~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~d~-~k~sliAKLA~q~~~~Y~~a~ 218 (361)
T cd09239 147 QCAAWAFAYLREHYPQVY-------GAVDMSSQLLSFNYSLMLAQAQECLLEKSLLDN-RKSHITAKVSAQVVEYYKEAL 218 (361)
T ss_pred HHHHHHHHHHHHhccCCC-------CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHH
Confidence 999999999999996421 125999999999999999999999999999985 899999999999999999999
Q ss_pred HHhhcCC-----CCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 036560 248 QCLSGCD-----MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLA 322 (420)
Q Consensus 248 ~~l~~~~-----~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~ 322 (420)
+.+.+.. +.+.+.+.|+.|+++|.+||+|+||||+|+.+++ +++||++|+||+.|.+.+++|.+.++....
T Consensus 219 ~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~---~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~~~- 294 (361)
T cd09239 219 RALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEE---QQKMGERVAYYQLANDKLEEAIKNAKGQPD- 294 (361)
T ss_pred HHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence 9998643 3456889999999999999999999999999999 999999999999999999999998764211
Q ss_pred CCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCccccccccc--CCCCCCCccccccCCCCCCC
Q 036560 323 PPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKAL--QALPELPNFQLSLRPDNYEL 383 (420)
Q Consensus 323 ~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp--~~~p~lp~~~l~~~p~~~~l 383 (420)
.-.+...++.+.++|.+++.+++||||||||+ +|| .++|+++...| ++|.||+-
T Consensus 295 -----~~~~~~~~~~l~~~i~~~l~~aekDNd~IYhe-~VP~~~~L~~i~~~~~-vk~~p~~~ 350 (361)
T cd09239 295 -----TVNLQEALSFTMDVIGGKRNSAKKENDFIYHE-AVPKLDTLQAVKGANL-VKGIPFSP 350 (361)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHhcccCceeec-CCCChhhcCCCcCccc-cccCCCCc
Confidence 01245678889999999999999999999998 888 67777777777 47765553
No 3
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=100.00 E-value=2.9e-72 Score=566.10 Aligned_cols=322 Identities=19% Similarity=0.221 Sum_probs=289.1
Q ss_pred ceeeecCCCCCCCCCchHHHhhhhHHHH------------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 036560 21 VVVYVPAIRIPLQSDLPRALKGVIPKEL------------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGL 88 (420)
Q Consensus 21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y------------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l 88 (420)
++|.|| +|+|.+|||.+||++||.++| |++|+.||++++....+ .+..+ ++.|.+||.||..|
T Consensus 2 ~~l~ip-lK~t~~vd~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~~lR~~~~~~~~~--~~~~~--~~~l~~Yy~qL~~l 76 (346)
T cd09240 2 SFISVP-LKKSSEVDLVKPLEKFIKNTYSSGEEQADYKEAIKELNKLRNNAVCRPLD--KHESS--LELLLRYYDQLCAI 76 (346)
T ss_pred Ceeecc-CcCCCcCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--cchhH--HHHHHHHHHHHHHH
Confidence 689999 999999999999999999998 88999999998753322 22222 78999999999999
Q ss_pred hhccCCC--CCcceeEeecCCCCC-----CcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHH
Q 036560 89 TKKENGL--EDLVEFKWKNLGDYG-----KQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKR 161 (420)
Q Consensus 89 ~~kfp~~--~~~v~F~W~dsl~~~-----~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK 161 (420)
+.|||.. +.+|.|+|+|+|+++ +.+++++|+.||++|||||||+| |||+ |+.++|.++||+|
T Consensus 77 ~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal-~s~l----------a~~~~~~~~eglK 145 (346)
T cd09240 77 EPKFPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAAL-QSQI----------AAEQNLDTDEGLK 145 (346)
T ss_pred HhcCCCCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHH-HHHH----------HHHcCCCChHHHH
Confidence 9999943 478999999999853 25689999999999999999999 9999 8889999999999
Q ss_pred HHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q 036560 162 EAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLI 241 (420)
Q Consensus 162 ~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~ 241 (420)
+||++||+|||+|+||++++++.++ ..+++||++++|.+|+.+||||||||+|+||+.++ +++++|||||.||++
T Consensus 146 ~A~~~fq~AAG~F~~l~e~~~~~~~----~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~~~-~k~~liAKLa~qv~~ 220 (346)
T cd09240 146 LAAKLFQQAAGIFNHLKETVLSALQ----QEPTPDLSPDTLSALSALMLAQAQEVFYLKATRDK-MKDAIIAKLAAQAAD 220 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHH
Confidence 9999999999999999999987653 45788999999999999999999999999999984 899999999999999
Q ss_pred HHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 036560 242 YYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSL 321 (420)
Q Consensus 242 ~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~ 321 (420)
+|++|.+.+.+..+.+.+++.|..|+++|..||.|+||||+|+.+.+ +++||++|+||+.|.+.++++++.+..+
T Consensus 221 ~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~~~~a~~~~~~~-- 295 (346)
T cd09240 221 YYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKA---QKKFGEEIARLQHALELIKTAQSRAGEY-- 295 (346)
T ss_pred HHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hchHHHHHHHHHHHHHHHHHHHHHhcch--
Confidence 99999999998888888999999999999999999999999999999 9999999999999999999998875532
Q ss_pred CCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCC
Q 036560 322 APPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNY 381 (420)
Q Consensus 322 ~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~ 381 (420)
..++.+.++|.+.+.+++||||+|||+ +||+ ++|+++...| ++|.|+
T Consensus 296 -----------~~~~~l~~~i~~~l~~aekDNd~IY~e-~VP~~~~L~~i~~~~~-vk~~p~ 344 (346)
T cd09240 296 -----------VDVKDFAAKISRALTAAKKDNDFIYHD-RVPDVKSLPPIGKAAL-AKPTPV 344 (346)
T ss_pred -----------hHHHHHHHHHHHHHHHHhhccCeEecc-CCCCchhccCCcCccc-ccCCCC
Confidence 137789999999999999999999998 8886 7787777777 477653
No 4
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=100.00 E-value=7.6e-72 Score=564.96 Aligned_cols=318 Identities=20% Similarity=0.236 Sum_probs=286.5
Q ss_pred ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560 21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK 90 (420)
Q Consensus 21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~ 90 (420)
++|.|| +|+|.+|||.++|++||.++| |++|++||+++++... +..+ ++.|.+||.||..|+.
T Consensus 1 ~~l~ip-~K~t~~vd~~~~l~~~I~~~y~~~~~~~~~dl~~l~~lR~~~~~~~~----~~~~--~~~l~~Yy~~L~~l~~ 73 (355)
T cd09241 1 NLLSIP-FKRTLPVDLKDALRNYISNHYFQTPSSFEDDLAEIDKLRNDAINPEP----SVNG--LSLLKEYYAQLVVLSK 73 (355)
T ss_pred CcCccC-CCcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhCCCC----ChhH--HHHHHHHHHHHHHHHh
Confidence 478999 999999999999999999998 9999999999987621 2222 8899999999999999
Q ss_pred ccCCCCCcceeEeecCCCCC-CcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560 91 KENGLEDLVEFKWKNLGDYG-KQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK 169 (420)
Q Consensus 91 kfp~~~~~v~F~W~dsl~~~-~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~ 169 (420)
||| +.+|.|+|+|+|+++ ..+++++|++||++|||||||++ |||+ |..++|.++||+|+||++||+
T Consensus 74 rfp--~~~i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal-~sq~----------a~~~~~~~~~glK~A~~~fq~ 140 (355)
T cd09241 74 KFP--DDQLEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGAL-YSQL----------ALSENRYTDEGLKRACSYFQA 140 (355)
T ss_pred cCC--CcCCceeeecccCCCCCCceeeccHHHHHHHHHHHHHHH-HHHH----------HHHcCCCChHHHHHHHHHHHH
Confidence 999 789999999999984 36899999999999999999999 9999 888999999999999999999
Q ss_pred HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 036560 170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQC 249 (420)
Q Consensus 170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~ 249 (420)
|||+|+||++++++.+ .+++||++++|++|+.+||||||||+|+||+.++ +++++|||||+|++++|++|.+.
T Consensus 141 AAG~F~~l~~~~~~~~------~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~-~k~sliAKLa~qv~~~Y~~a~~~ 213 (355)
T cd09241 141 SAGCFEYILQHLLPTL------SPPPDLDENTLKALESLMLAQAQECFWQKAISDG-TKDSLIAKLAAQVSDYYQEALKY 213 (355)
T ss_pred HHHHHHHHHHhccccc------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997643 3789999999999999999999999999999986 69999999999999999999999
Q ss_pred hhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 036560 250 LSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSP 329 (420)
Q Consensus 250 l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p 329 (420)
++.. +.+++.|..|+++|..||+|+||||+|+.+.+ +++||++|+||+.|.+.++++.+.++.+ .+
T Consensus 214 l~~~---~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e---~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~--------~~ 279 (355)
T cd09241 214 ANKS---DLIRSDWINHLKVKKHHFKAAAHYRMALVALE---KSKYGEEVARLRVALAACKEALKEARYG--------NK 279 (355)
T ss_pred HhcC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhhcc--------ch
Confidence 9844 34789999999999999999999999999999 8999999999999999999999987754 23
Q ss_pred CchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCC
Q 036560 330 PLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNY 381 (420)
Q Consensus 330 ~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~ 381 (420)
.+...++.+.+.|.+++.+++||||+|||+ +||+ ++|+++.-.| ++|.++
T Consensus 280 ~~~~~~~~l~~~i~~~l~~aekdNd~IY~e-~VP~~~~L~~i~~~~~-vk~~~~ 331 (355)
T cd09241 280 AVLEDLQGLKDIVKESLKRAERDNDLIYLQ-PVPPASELPPIKPASM-VKAIVP 331 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCeeCCc-CCCCcccCCCCCCccc-ccccCc
Confidence 345667889999999999999999999998 8886 7777777666 566543
No 5
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=100.00 E-value=1.2e-71 Score=562.01 Aligned_cols=326 Identities=20% Similarity=0.202 Sum_probs=288.8
Q ss_pred eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560 22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK 91 (420)
Q Consensus 22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k 91 (420)
+|.|| +|+|.+|||..||++||.++| |++|++||+++++...+ . ..++.|.+||.||+.|+.|
T Consensus 1 ~l~lp-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~lR~~~~~~~~~-----~-~~~~~l~~Yy~qL~~l~~r 73 (348)
T cd09242 1 LISLP-LKDTEEVDWKKPLSSYLKRSYGSSTFYYEEEIAEFDRLRQDANGVLAD-----E-TGRDLLYKYYGQLELLELR 73 (348)
T ss_pred CCCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC-----H-HHHHHHHHHHHHHHHHHhh
Confidence 57899 999999999999999999998 99999999999764331 1 2278999999999999999
Q ss_pred cCC--CCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560 92 ENG--LEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK 169 (420)
Q Consensus 92 fp~--~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~ 169 (420)
||. .+.+|.|+|+|+|++ ..+++++|++||++|||||+|++ ||++ |..++|.++||+|+||++||+
T Consensus 74 fp~~~~~~~v~F~W~d~~~~-~~~~~~~sl~fEka~VLfNiaal-~s~~----------A~~~~~~~~~~~K~A~~~fq~ 141 (348)
T cd09242 74 FPFNNKELKVDFTWYDAFYK-SKKVKQHSLAFEKASVLFNIGAL-LSQL----------AAEKYREDEDDLKEAITNLQQ 141 (348)
T ss_pred cCCCCccccceeeeeecCCC-CCceeecchHHHHHHHHHHHHHH-HHHH----------HHHhccCChHHHHHHHHHHHH
Confidence 994 357899999999995 48999999999999999999999 9999 888899999999999999999
Q ss_pred HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchhHHHHHHHHHHHHHHHHH
Q 036560 170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQ--KATLSVKRRLACELLIYYSQAY 247 (420)
Q Consensus 170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~--K~k~sliAkLA~q~~~~Y~~A~ 247 (420)
|||+|+||++++++ .|+.||++++|++|+.+||||||||+|+||+.++ ++++++|||||+|++++|++|.
T Consensus 142 AAG~f~~l~e~~~~--------~ps~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~~~~k~sliaKLa~~~~~~Y~~a~ 213 (348)
T cd09242 142 AAGCFQYINENFLH--------APSVDLQQENVKFLVKLMLAQAQEIFLLKLINGDDAQKKASLISKLASATANLYESCV 213 (348)
T ss_pred HHHHHHHHHHhcCC--------CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999853 4788999999999999999999999999999984 3799999999999999999999
Q ss_pred HHhhcCCC--CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 036560 248 QCLSGCDM--NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPT 325 (420)
Q Consensus 248 ~~l~~~~~--~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~ 325 (420)
+.+.+... .+.+++.|+.++++|..||+|+||||+|+.+.+ +++||++|+||+.|.+.++++.+.++.+..+++
T Consensus 214 ~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~- 289 (348)
T cd09242 214 EFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEA---AGKYGEAIAYLTQAESILKEANPQKLSLKASAG- 289 (348)
T ss_pred HHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hccHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-
Confidence 99987432 335789999999999999999999999999999 899999999999999999999998876643322
Q ss_pred CCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCC
Q 036560 326 TRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDN 380 (420)
Q Consensus 326 ~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~ 380 (420)
...+.+...++.+.+.|.+.+.+++||||+|||+ +||+ ++|+++.-.| ++|.|
T Consensus 290 ~~~~~~~~~~~~~~~~v~~~l~~aekDNd~IY~~-~VP~~~~L~~i~~~~~-vk~~p 344 (348)
T cd09242 290 DAAYALNDDFKGQKDTVEEKLKELEKDNDFIYHD-IVPSEVTLPSIKPLDA-AKPIP 344 (348)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccCeeccC-CCCCccccCCCCcccc-CCCCC
Confidence 2233466678999999999999999999999998 8886 7777777777 47665
No 6
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=100.00 E-value=1.4e-70 Score=552.22 Aligned_cols=333 Identities=22% Similarity=0.350 Sum_probs=292.8
Q ss_pred cCCCCCCCCCchHHHhhhhH----HHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh------ccCCC
Q 036560 26 PAIRIPLQSDLPRALKGVIP----KELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK------KENGL 95 (420)
Q Consensus 26 PglK~t~~vD~~~~L~~~I~----~~yi~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~------kfp~~ 95 (420)
| ||.|.+|+| .++.... +..+.+|..-|.+++.+..++ +++.++|+.+|.+|++.|.||.. ..+++
T Consensus 6 ~-~k~t~~~~f--~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~-~~~~~~~~~a~~~Yl~ll~g~~~~~d~~~~~~~l 81 (353)
T cd09243 6 P-LKATAPVKF--DLKGVATTPAASKLCSDLRTARARLLELLSDP-SNDVDTVKTAFNAYLSLLQGFILALDGKTQESKL 81 (353)
T ss_pred c-ccccccccc--ccccccCChhHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhhcccccCCcccc
Confidence 7 999999999 3443333 346999999999999998884 67788999999999999999997 56788
Q ss_pred CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHH
Q 036560 96 EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLE 175 (420)
Q Consensus 96 ~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~ 175 (420)
+..|.|+|+|+|++ ..+++++|++||++|||||||+| |||+++.+.+ ..+ .++||+|+||++||+|||||+
T Consensus 82 ~~~v~F~W~dsl~~-~~~~~q~sl~fEk~sVLfNigal-~s~~As~~~~------~~~-~s~e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 82 RYLINFKWTDSLLG-NEPSVQQDAIFELASMLFNVALW-YTKHASKLAG------KED-ITEDEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred ceeeeEEEECCCCC-CCceeeccHHHHHHHHHHHHHHH-HHHHHHHHhc------cCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999975 48999999999999999999999 9988766643 233 455999999999999999999
Q ss_pred HHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 036560 176 FCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDM 255 (420)
Q Consensus 176 ~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~~ 255 (420)
||+++++|.+++. ..|++||++++|++|+.|||||||||+|+|||++ |++++||||||+|+++||++|.+.+.+.
T Consensus 153 ~l~e~~l~~l~~~--~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~-k~k~sliaKLA~q~a~~Y~~A~~~l~~~-- 227 (353)
T cd09243 153 FVKENYIPKLIEP--AEKGSDLDPRVLEAYINQCTAEAQEVTVARAIEL-KHNAGLISALAYETAKLFQKADDSLSSL-- 227 (353)
T ss_pred HHHHhhccccccc--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 9999999887532 3478899999999999999999999999999998 5899999999999999999999999864
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCC-chh
Q 036560 256 NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAP-PTTRSPP-LWG 333 (420)
Q Consensus 256 ~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~-p~~~~p~-~~~ 333 (420)
.+.+..+|+.|+++|..||+|+||||+|+.+++ +++||++|+|||.|.++++++++.|++|..+. |++..++ ...
T Consensus 228 ~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e---~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~~~~~~~~~~~~~ 304 (353)
T cd09243 228 DPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLA---KDKCGEAIRSLQESEKLYNKAEALCKEYAKTKGPGTTAKPDQHL 304 (353)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhHh---cchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhhH
Confidence 345788999999999999999999999999999 89999999999999999999999999998763 4333333 334
Q ss_pred hhHHHHHhHHhHHHHhhhhcCcccccccccCCCCCCC---ccccccCCCCC
Q 036560 334 AMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPELP---NFQLSLRPDNY 381 (420)
Q Consensus 334 ~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~p~lp---~~~l~~~p~~~ 381 (420)
..+.+.+.|.+.+.+++||||||||| +||+++|.++ .||| ++|+||
T Consensus 305 ~~~~l~~~I~~~L~~aeKDNdfIYh~-~VP~e~p~~e~k~~~g~-~~~~~~ 353 (353)
T cd09243 305 FFRKLGPLVKRTLEKCERENGFIYHQ-KVPDEVPQLELKATYGL-VSPEEF 353 (353)
T ss_pred HHHHHHHHHHHHHHHHhhhhceeccc-cCCCCCCccccccccCc-cCCCCC
Confidence 57889999999999999999999998 9999999998 5899 799886
No 7
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=100.00 E-value=4.1e-70 Score=547.79 Aligned_cols=301 Identities=17% Similarity=0.126 Sum_probs=275.0
Q ss_pred eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560 22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK 91 (420)
Q Consensus 22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k 91 (420)
||.|| ||+|++|||..||++||.++| |.+|++||++++++..+ . .+ ++.|.+||.||+.|+.|
T Consensus 1 mi~l~-lK~T~~vd~~~~L~~yI~~~Y~e~~~~y~~~l~~l~~LR~~~~~~~~~--~--~g--~~~L~~YY~qL~~le~R 73 (350)
T cd09244 1 MIPLG-LKETKEIDFMEPFKDFILEHYSEDPSLYEDEIADFTDLRQAMRTPSRD--E--AG--IELLFEYYNQLYFVERR 73 (350)
T ss_pred CCCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhCCCCC--h--hH--HHHHHHHHHHHHHHHhc
Confidence 57788 999999999999999999999 99999999999875442 1 12 78999999999999999
Q ss_pred cCCC--CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560 92 ENGL--EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK 169 (420)
Q Consensus 92 fp~~--~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~ 169 (420)
||.. +.+|.|+|+|+|++ .+++|+|+.||++||||||||| |||+ |+.++|.++||+|+||++||+
T Consensus 74 Fp~~~~~~~v~F~W~Ds~~~--~~~~q~sl~fEkasVLFNigAl-~Sq~----------aa~~~r~~~eglK~A~~~Fq~ 140 (350)
T cd09244 74 FFPPDRSLGIYFHWYDSLTG--VPSVQRSVAFEKASVLFNIGAL-YTQI----------GAKQDRTTEEGIEAAVDAFQR 140 (350)
T ss_pred CCCccccccceeeeecccCC--CccccccHHHHHHHHHHHHHHH-HHHH----------HHHhccCChHHHHHHHHHHHH
Confidence 9733 46899999999998 7999999999999999999999 9999 999999999999999999999
Q ss_pred HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhH-----HHHHHHHHHHHHH
Q 036560 170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSV-----KRRLACELLIYYS 244 (420)
Q Consensus 170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sl-----iAkLA~q~~~~Y~ 244 (420)
|||+|+||++++. +.|++||++++|++|+.+||||||||+|+||+.++.+|+++ |||||+||+++|+
T Consensus 141 AAG~F~~l~e~~~--------~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~~k~~~~~~~~lAklA~qv~~~Y~ 212 (350)
T cd09244 141 AAGAFNYLRENFS--------NAPSMDLSPEMLEALIKLMLAQAQECVFEKLVLPGEDSKDIQACLDLAQEAAQVSDCYS 212 (350)
T ss_pred HHHHHHHHHHhcc--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999984 46789999999999999999999999999999886467777 9999999999999
Q ss_pred HHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHH---HHhhccC
Q 036560 245 QAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKK---ACLTFSL 321 (420)
Q Consensus 245 ~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k---~~~~~~~ 321 (420)
+|++.+++.++.+.|++.|+.++++|.+||+|+||||+|+.+.+ ++++|++|++|+.|...+++|.+ +|+.+.
T Consensus 213 ~a~~~~~~~~~~~~i~~~W~~~v~~K~~~f~AlA~y~~a~~l~~---~~~~g~~~a~L~~A~~~~e~a~~~~~~c~~~~- 288 (350)
T cd09244 213 EVHKLMNQEPVKDYIPYSWISLVEVKSEHYKALAHYYAAMGLLL---EERRLLGKAHLKEALLLHEEALRLHRMCRFLR- 288 (350)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 99999998778888999999999999999999999999999999 99999999999999999999999 566553
Q ss_pred CCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCccccc
Q 036560 322 APPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEE 359 (420)
Q Consensus 322 ~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~q 359 (420)
....+...++..+++++.......+||||+|+.
T Consensus 289 -----~~~~l~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 321 (350)
T cd09244 289 -----NVDSLQEVLKEAHDRSLNKYSSLEEEDDFSDAL 321 (350)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHhhccccchhhcc
Confidence 233466778999999999999999999999995
No 8
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=100.00 E-value=1.1e-65 Score=517.54 Aligned_cols=321 Identities=36% Similarity=0.552 Sum_probs=288.4
Q ss_pred eeeecCCCCCCCCCchHHHhhhhHHHH-----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560 22 VVYVPAIRIPLQSDLPRALKGVIPKEL-----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK 90 (420)
Q Consensus 22 ~l~iPglK~t~~vD~~~~L~~~I~~~y-----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~ 90 (420)
+|.+| ||+|.+|||..+|++||.++| |+++++||++++....++ ++...++++|.+||++|.+|+.
T Consensus 1 ~i~~p-lk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~~lR~~~~~~~~~~--~~~~~~~~~l~~Y~~~L~~l~~ 77 (345)
T cd09034 1 FIGLP-LKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLSKLRNNIVTEQNND--TTCENLLEALKEYLPYLLGLEK 77 (345)
T ss_pred CCCCC-CCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHHHHHHHHHhhccCC--cchHHHHHHHHHHHHHHHHHHh
Confidence 46789 999999999999999999998 999999999998876542 1345569999999999999999
Q ss_pred ccC--CCCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCC-hhhHHHHHHHH
Q 036560 91 KEN--GLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLS-SDCKREAVDLL 167 (420)
Q Consensus 91 kfp--~~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s-~eglK~A~~~f 167 (420)
||| ..+.+|.|+|+|+++. +.++.. |++||++|||||+|++ ||++ |..+++.+ ++|+|.||++|
T Consensus 78 ~~~~~~~~~~i~F~W~d~~~~-~~~~~~-~l~fE~~~vLfn~aa~-~s~~----------a~~~~~~~~~~~~k~A~~~f 144 (345)
T cd09034 78 KLPFQKLRDNVEFTWTDSFDT-KKESAT-SLRYELLSILFNLAAL-ASQL----------ANEKLITGSEEDLKQAIKSL 144 (345)
T ss_pred cCCcccccccceeEeecccCC-Ccchhh-hHHHHHHHHHHHHHHH-HHHH----------HHhccCCCchHHHHHHHHHH
Confidence 998 5678999999999996 355555 9999999999999999 9999 88888888 89999999999
Q ss_pred HHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 036560 168 LKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAY 247 (420)
Q Consensus 168 q~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~ 247 (420)
|+|||+|+||++++++..+. .+++||++++|.+|..+||||||||+|+||+.++++++++|||||+|++++|++|.
T Consensus 145 q~AAG~F~~l~~~~~~~~~~----~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~ 220 (345)
T cd09034 145 QKAAGYFEYLKEHVLPLPPD----ELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAKYYEEAL 220 (345)
T ss_pred HHHHHHHHHHHHhccccCCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875532 36789999999999999999999999999999855899999999999999999999
Q ss_pred HHhhcCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 036560 248 QCLSGCDMN--HGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPT 325 (420)
Q Consensus 248 ~~l~~~~~~--~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~ 325 (420)
+.+++.+.. ++|+.+|..|+++|..+|+|+||||+|..+.+ .++||++|+||+.|...++++.+.++.+..
T Consensus 221 ~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e---~~~~G~aia~L~~A~~~~~~~~~~~~~~~~---- 293 (345)
T cd09034 221 KCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDE---ANKIGEAIARLQAALELLKESERLCKSFLL---- 293 (345)
T ss_pred HHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 999987653 67999999999999999999999999999999 889999999999999999999999887632
Q ss_pred CCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccCC--CCCCCcccc
Q 036560 326 TRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQA--LPELPNFQL 374 (420)
Q Consensus 326 ~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~--~p~lp~~~l 374 (420)
+.++.++.+.++|++.+.+++||||+|||+ +||++ +|+++.-.+
T Consensus 294 ----~~~~~~~~l~~~i~~~l~~~~kdNd~Iy~e-~VP~~~~Lp~i~~~~~ 339 (345)
T cd09034 294 ----DVWGNLKKLKEKIEKELEKAERENDFIYFE-EVPPEDPLPEIKGALL 339 (345)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhhhhHhhcc-cCCCCCCCCccccccc
Confidence 468889999999999999999999999998 78865 666665555
No 9
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=100.00 E-value=1.4e-64 Score=508.70 Aligned_cols=307 Identities=15% Similarity=0.062 Sum_probs=264.7
Q ss_pred eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560 22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK 91 (420)
Q Consensus 22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k 91 (420)
||.|| +|+|.+|||+.||++||.++| |.+|+.||+++++... +..+ ++.|.+||.||+.|+.|
T Consensus 1 mi~lp-lK~T~~vDl~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~~~~~~----~~sg--le~L~~YY~qL~~Le~R 73 (384)
T cd09248 1 MIPLG-LKETKELDLPTPLKELISEHFGEDGTSYEAEIRELEDLRQAMRTPSR----SEAG--LELLMAYYNQLCFLDAR 73 (384)
T ss_pred CCCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCC----ChhH--HHHHHHHHHHHHHHHhc
Confidence 57889 999999999999999999999 9999999999654322 1122 78999999999999999
Q ss_pred cCCC--CCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560 92 ENGL--EDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK 169 (420)
Q Consensus 92 fp~~--~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~ 169 (420)
||.. +.+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+ |+.++|.++||+|.||.+||+
T Consensus 74 Fp~~~~~~~v~FtW~Daf~~--~~~~q~sl~FEKasVLFNigAL-~Sql----------aa~~~r~t~eGlK~A~~~FQ~ 140 (384)
T cd09248 74 FFPPAKSLGLFFHWYDSLTG--VPAQQRALAFEKGSVLFNIGAL-HTQI----------GARQDRSCTEGTRRAIDAFQR 140 (384)
T ss_pred CCCCcccccceeeeeccCCC--CccccccHHHHHHHHHHhHHHH-HHHH----------HhhccCCChHHHHHHHHHHHH
Confidence 9843 46899999999998 6999999999999999999999 9999 999999999999999999999
Q ss_pred HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh-------hhcccchhHHHHHHHHHHHH
Q 036560 170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAV-------DCQKATLSVKRRLACELLIY 242 (420)
Q Consensus 170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi-------~~~K~k~sliAkLA~q~~~~ 242 (420)
|||+|+||++++. +.|++||++++|.+|+.+||||||||+|+|++ .+ ++++++|||||+||+++
T Consensus 141 AAG~F~~L~e~~~--------~~Ps~Dms~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~d-~~k~~~iAKlAaQvs~~ 211 (384)
T cd09248 141 AAGAFSLLRENFS--------NAPSPDMSTASLSMLEQLMVAQAQECIFEGLLLPLLATPQD-FFAQLQLAQEAAQVAAE 211 (384)
T ss_pred HHHHHHHHHHHhc--------cCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cchhhHHHHHHHHHHHH
Confidence 9999999999973 46889999999999999999999999999999 55 47999999999999999
Q ss_pred HHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCC-------------------------------
Q 036560 243 YSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNE------------------------------- 291 (420)
Q Consensus 243 Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~------------------------------- 291 (420)
|++|++.+.+.++++.|++.|+.+|++|..||+|+||||+|+.+.+...
T Consensus 212 Y~~a~~~~~~~~~~~~i~~~W~~~v~~K~~hF~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 291 (384)
T cd09248 212 YRLVHRTMAQPPVRDYVPFSWTALVHVKAEHFCALAHYHAAMALCDSSPASEGELATQEKAFLQPHTSQPEGPSLPQEPE 291 (384)
T ss_pred HHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHhccCCCCCCCccccccChH
Confidence 9999999998888889999999999999999999999999999774221
Q ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHh---hccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccCCC
Q 036560 292 -PSCHVSAVCCFLAAEEILAESKKACL---TFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQAL 366 (420)
Q Consensus 292 -~~~~GeaIa~L~~A~~~l~ea~k~~~---~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~ 366 (420)
..+.|. ++|+.|....+||.|+.+ .-. ..-.+.+.++.-+++......+..+|+||+|..| .|...
T Consensus 292 ~~~~~~~--ahl~~a~~~~eea~r~~~~c~~l~------~~~~l~~~l~~~~~~s~~~~~~~~~~~d~~~~~~-~~~~~ 361 (384)
T cd09248 292 ERRKLGK--AHLKRAILGQEEALRLHALCRILR------KVDLLQAVLTQALRRSLAKYSELDREDDFFETGE-APDIQ 361 (384)
T ss_pred HHHHHHH--HHHHHHHHhhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHhhhccccchhhccc-cCccc
Confidence 134455 899999999999997544 211 0112445567777888888889999999999874 34433
No 10
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=100.00 E-value=1.3e-63 Score=508.09 Aligned_cols=321 Identities=21% Similarity=0.244 Sum_probs=269.0
Q ss_pred ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560 21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK 90 (420)
Q Consensus 21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~ 90 (420)
||+.|| ||+|++|||.++|++||.++| +++|+.||+++++... . ...+++.|.+||+||..|+.
T Consensus 1 ~~~~lp-lK~t~~vd~~~~l~~~i~~~y~~~~~~~~~~l~~l~~lR~~~~~~~~---~--~~~~~~~l~~Y~~~L~~l~~ 74 (377)
T PF03097_consen 1 PMLSLP-LKKTKEVDLKKPLKKYISSHYGEDPDSFDEDLKELDKLRQDARNPQS---P--SESGLKLLEEYYPQLESLEK 74 (377)
T ss_dssp ----------BEEE-CHHHHHHHHHHHCSSCCHCCHHHHHHHHHHHHHHHTSS----S--SHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCCC-CCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCC---C--chhHHHHHHHHHHHHHHHHH
Confidence 689999 999999999999999999998 9999999999987531 2 23348999999999999999
Q ss_pred ccCCCCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHH
Q 036560 91 KENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKA 170 (420)
Q Consensus 91 kfp~~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~A 170 (420)
|||....+|.|+|+|+|+. ..++++.|+.||++|||||+|++ |+++ |...+|.+++|+|.|+.+||+|
T Consensus 75 ~~p~~~~~i~F~W~d~~~~-~~~~~~~~~~fE~a~vL~N~aa~-~s~~----------a~~~~~~~~~~~k~A~~~fq~A 142 (377)
T PF03097_consen 75 RFPSDQIQISFTWSDSLST-GKPVSQSSLAFEKACVLFNIAAL-YSQL----------AASQNRSTDEGLKEACNYFQRA 142 (377)
T ss_dssp CSCSSCCTT-EEEE-TTST-TSEEEESSHHHHHHHHHHHHHHH-HHHH----------HHHS-TTSHHHHHHHHHHHHHH
T ss_pred hcccccceeeEeeeccccC-CCcccchhhHHHHHHHHHHHHHH-HHHH----------HHhcccccchhHHHHHHHHHHH
Confidence 9997677899999999955 37999999999999999999999 9999 8888888999999999999999
Q ss_pred hhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 036560 171 SGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCL 250 (420)
Q Consensus 171 AG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l 250 (420)
||+|+||++++ ...++.||++++|.+|..+||||||||+|+||+.++ .++++|||||++++++|++|.+.+
T Consensus 143 Ag~f~~l~~~~--------~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~~~-~~~~liAKLa~~~~~~Y~~a~~~l 213 (377)
T PF03097_consen 143 AGIFQYLRENF--------KDSPSPDLSPEVLSALSNLMLAQAQECFYEKAIADK-KKPSLIAKLAAQASELYDEAHEAL 213 (377)
T ss_dssp HHHHHHHHHHS--------SS-SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTT-G-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--------cccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999995 246788999999999999999999999999999984 899999999999999999999999
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 036560 251 SGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPP 330 (420)
Q Consensus 251 ~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~ 330 (420)
.+.+..+.+++.|..++.+|..+|.|+||||+|..+.+ .++||++|+||+.|.+.++++.+.++.+ ...+.
T Consensus 214 ~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~---~~~~G~aia~L~~A~~~l~~a~~~~~~~------~~~~~ 284 (377)
T PF03097_consen 214 QSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEE---AKKYGEAIARLRRAEEALKEASKLAKKC------SKSSS 284 (377)
T ss_dssp TTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHHHHHCCCH------SCCST
T ss_pred hcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhhhhcc------cchHH
Confidence 99887777889999999999999999999999999999 9999999999999999999999998765 22455
Q ss_pred chhhhHHHHHhHHhHHHHhhhhcCcccccccccCC--CCCCCccccccCCC
Q 036560 331 LWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQA--LPELPNFQLSLRPD 379 (420)
Q Consensus 331 ~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~--~p~lp~~~l~~~p~ 379 (420)
....++.+.+.|.+.+.+..||||+|||+ +||+. +|+++...+ ++|.
T Consensus 285 ~~~~~~~l~~~i~~~l~~~~kdNd~Iy~e-~VP~~~~L~~~~~~~~-vk~~ 333 (377)
T PF03097_consen 285 LQDDLKSLLDQIQEKLEKAEKDNDFIYHE-PVPSESELPPIKPASM-VKPI 333 (377)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTT---S--SCGGSGGS-SSST-T---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc-cCCCcccccccccccc-cCCC
Confidence 77889999999999999999999999997 77765 445555555 4554
No 11
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=100.00 E-value=4.8e-60 Score=475.36 Aligned_cols=238 Identities=16% Similarity=0.122 Sum_probs=218.1
Q ss_pred eeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhc
Q 036560 22 VVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKK 91 (420)
Q Consensus 22 ~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~k 91 (420)
||.|| +|+|.+|||+.||++||.++| |.+|+.||+++.+...+ ..+ ++.|.+||.||+.|+.|
T Consensus 1 ~i~lp-lK~T~~VD~~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~~~~~~~----~sg--~e~L~~YY~qL~~Le~R 73 (385)
T cd09249 1 LIPLG-LKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLMDLRQACRTPSRD----EAG--VELLMSYFSQLGFLENR 73 (385)
T ss_pred CCCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC----hhH--HHHHHHHHHHHHHHHhh
Confidence 46788 999999999999999999999 99999999996543222 122 78999999999999999
Q ss_pred cCC--CCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHH
Q 036560 92 ENG--LEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLK 169 (420)
Q Consensus 92 fp~--~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~ 169 (420)
||. .+.+|.|+|+|+|++ .+++++|+.||++||||||||| |||+ |+.++|.+++|+|+||++||+
T Consensus 74 Fp~~~~~~~v~FtW~Dsf~~--~~~~q~sl~fEkasVLFNigAl-~Sql----------aa~~~r~t~eGlK~A~~~FQ~ 140 (385)
T cd09249 74 FFPPTRQMGILFTWYDSFTG--VPVSQQNLLLEKASILFNIGAL-YTQI----------GTRCNRQTQAGLESAVDAFQR 140 (385)
T ss_pred CCCCcccccceeeeeccCCC--CccccccHHHHHHHHHHhHHHH-HHHH----------HHHhccCCchhHHHHHHHHHH
Confidence 974 357899999999996 7899999999999999999999 9999 999999999999999999999
Q ss_pred HhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhH-----HHHHHHHHHHHHH
Q 036560 170 ASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSV-----KRRLACELLIYYS 244 (420)
Q Consensus 170 AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sl-----iAkLA~q~~~~Y~ 244 (420)
|||+|+||++++. ..|+.||++++|++|+.+||||||||+|+|++.++ +++++ |||||+||+++|+
T Consensus 141 AAG~F~~L~e~~~--------~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~-~k~~~~~i~kiAklAaqvs~~Y~ 211 (385)
T cd09249 141 AAGVLNYLKETFT--------HTPSYDMSPAMLSVLVKMMLAQAQECLFEKISLPG-IRNEFFTLVKMAQEAAKVGEVYM 211 (385)
T ss_pred HHHHHHHHHHhcc--------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999973 46788999999999999999999999999999985 78887 8999999999999
Q ss_pred HHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccC
Q 036560 245 QAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDK 288 (420)
Q Consensus 245 ~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e 288 (420)
+|++.+++.++.+.|++.|+.++++|.+||+|+||||+|..+++
T Consensus 212 ~a~~al~s~~~~~~i~~~W~~~v~~K~~~f~AlA~Y~~A~~l~~ 255 (385)
T cd09249 212 QVHTAMNQAPVKENIPYSWSSLVQVKAHHYNALAHYFVATLLID 255 (385)
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888889999999999999999999999999998884
No 12
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=100.00 E-value=6.3e-56 Score=454.92 Aligned_cols=352 Identities=18% Similarity=0.137 Sum_probs=273.3
Q ss_pred CCCCCCCchHHHhhhhHHHHHHHHHHHHHHHHhhhhcCC-------CCchHHHHHHHHHHHHHHHHhhhccCC----CCC
Q 036560 29 RIPLQSDLPRALKGVIPKELVDRLTCLRNQIVLVAEDTD-------GSAITELRRALEEYLTLLIGLTKKENG----LED 97 (420)
Q Consensus 29 K~t~~vD~~~~L~~~I~~~yi~~L~~LR~~i~~~~~~~~-------~s~~~~l~~~L~~Y~~qL~~l~~kfp~----~~~ 97 (420)
=.|.+|.|..-+..-=....+......|..++....+|. .+....++++|++||++|.+|+.+||. ++.
T Consensus 7 ptTs~~sF~~~~~~~~~~~l~~~a~~~R~~lr~~lk~~k~~~~~~~~~~~~~~~~aL~~Ylp~L~~l~~~~~~~~~~l~~ 86 (413)
T cd09245 7 PTTSSISFSDFFNSDSYPSLPLNATTARAVLRAALKAHKRTPPGSQASNLLTVVKALEEYLPYLLAIDACLSHDELILKS 86 (413)
T ss_pred CCCcccchhhhcCCCcccchhhHHHHHHHHHHHHHHhcccCCcccccccHHHHHHHHHHHHHHHHHHHccCCcchhcccc
Confidence 377889996433331111238899999999887765543 133457799999999999999999983 346
Q ss_pred cceeEeecCCCCCC----cceeecchHHHHHHHHHHHHHHHHHhhhccc-CCCCcccc------cccCCChhhHHHHHHH
Q 036560 98 LVEFKWKNLGDYGK----QEAFVANSWFELLSVVHMMAMLTLSDANSLM-IPKDFSGL------AVRVLSSDCKREAVDL 166 (420)
Q Consensus 98 ~v~F~W~dsl~~~~----~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l-~~~~~~~~------~~~r~s~eglK~A~~~ 166 (420)
.|.|+|+|+|+++. ..+++.|++||++|||||||++ ||+++..+ .+...+.. ...+.++|++|.||++
T Consensus 87 ~i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l-~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~lK~A~~~ 165 (413)
T cd09245 87 EPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYA-LSNLARSILAPLGAYETDRSISDASRKQRDERLKAATKL 165 (413)
T ss_pred cceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHH-HHHHHHHHhcccccccccccccccccccchHHHHHHHHH
Confidence 79999999998743 3589999999999999999999 99885542 22110000 1237889999999999
Q ss_pred HHHHhhHHHHHHhhcccCCCCcc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh---------------ccc--c
Q 036560 167 LLKASGYLEFCIKNIIVHIPPDI-KIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDC---------------QKA--T 228 (420)
Q Consensus 167 fq~AAG~F~~l~e~~l~~l~~~~-~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~---------------~K~--k 228 (420)
||+|||||+||++++++.++... ...+++||+++++.+|+.|||||||||+|.|++.. +|+ +
T Consensus 166 l~~AAGvf~~L~~~~l~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~ap~~~k~~~s 245 (413)
T cd09245 166 LCKAAGIFDYLATRVLPQWESNRGGAPPPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPGPPLPKVHPS 245 (413)
T ss_pred HHHHHHHHHHHHhcccccccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccCccccccccc
Confidence 99999999999999998875321 23578899999999999999999999999998752 132 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC---CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHH
Q 036560 229 LSVKRRLACELLIYYSQAYQCLSGCDM---NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAA 305 (420)
Q Consensus 229 ~sliAkLA~q~~~~Y~~A~~~l~~~~~---~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A 305 (420)
++||||||+|+++||++|.+.+.+.+. .+.|+.+|+.|+.+|..+|+|+||||+|+++++ +++||++|++|+.|
T Consensus 246 ~sLiAKLa~~~~~~y~~A~~~l~~~~~~~~~~~i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e---~~k~GeaIa~L~~A 322 (413)
T cd09245 246 AHLLARLCLAASEHAESARALLSTPGSKRGSGEVSEELLRYLSDLRRVARALACKFLGIDAGE---NGKVGEAIGWLRAA 322 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhHh---cCCHHHHHHHHHHH
Confidence 699999999999999999999987764 346889999999999999999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHhhccCCC-C-------CCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccCCCC---CCCcccc
Q 036560 306 EEILAESKKACLTFSLAP-P-------TTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALP---ELPNFQL 374 (420)
Q Consensus 306 ~~~l~ea~k~~~~~~~~~-p-------~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~p---~lp~~~l 374 (420)
.+.++++++......... + ..+....+...+.+.++|...+.+.+||||+||+| +||+.-+ .+|.-.-
T Consensus 323 ~~~L~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~e~~~i~~~l~~~~K~ND~Iy~q-~VP~~~~L~~~~P~Gr~ 401 (413)
T cd09245 323 KKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKKMNDTVSFQ-PVPPSSELQSSMPSGRE 401 (413)
T ss_pred HHHHHHhhhccccccccccchhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHhcceeeee-cCCChHhhhhcCCCccc
Confidence 999988776422100000 0 00111112456788999999999999999999998 8885433 6776444
Q ss_pred ccCCCCCCCCC
Q 036560 375 SLRPDNYELPE 385 (420)
Q Consensus 375 ~~~p~~~~lp~ 385 (420)
.+.|.||..|+
T Consensus 402 i~~~~~~~~p~ 412 (413)
T cd09245 402 AHTAKPYTPPP 412 (413)
T ss_pred ccCCCCCCCCC
Confidence 47788898886
No 13
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=100.00 E-value=7.3e-55 Score=439.59 Aligned_cols=323 Identities=16% Similarity=0.140 Sum_probs=255.7
Q ss_pred CCCCCCchHHHhhhhH-HHH-HHHHHHHHHHHHhhhhcCCCCch------HHHHHHHHHHHHHHHHhhhcc--CCCCCcc
Q 036560 30 IPLQSDLPRALKGVIP-KEL-VDRLTCLRNQIVLVAEDTDGSAI------TELRRALEEYLTLLIGLTKKE--NGLEDLV 99 (420)
Q Consensus 30 ~t~~vD~~~~L~~~I~-~~y-i~~L~~LR~~i~~~~~~~~~s~~------~~l~~~L~~Y~~qL~~l~~kf--p~~~~~v 99 (420)
.|+.+.|...+..-=+ .+. +.+.+.-|+.++.....|.--+. .+.+..|..|+..|.++..++ -.++..|
T Consensus 7 ~t~~~~f~~~~~~~~~~t~~~l~~~s~~r~~~~~~~~~~~~~~~~~~~~~~~yl~~L~~~~~~L~~~~~~~~~~~l~~~i 86 (346)
T cd09247 7 KTKKIVFEKTFQARDSLTLEQLKELSLRRRAIIESINGSPFIALAIAREKAQYLPYLEGYLPALENLVNHRDKVQLNEQL 86 (346)
T ss_pred CccccchhhhhhcCCcccccccchhhHHHHHHHHHhhcCCCccHHHHHhhhhHHHHHHHHHHhhccCCccchHHhhcccC
Confidence 5667777554432211 111 55555555555543322211111 124667777777777777765 2367899
Q ss_pred eeEeecCCCC--CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHHH
Q 036560 100 EFKWKNLGDY--GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFC 177 (420)
Q Consensus 100 ~F~W~dsl~~--~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~l 177 (420)
.|+|+|+|++ +...+++.|++||++|||||+|++ ||++ |....+. ||+|.||++||+|||||+||
T Consensus 87 ~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~-~s~~----------A~~~~~~--e~~K~A~~~l~~AAG~f~~l 153 (346)
T cd09247 87 SFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAA-LRER----------ASEVLPT--EDFKEAATHLRRAAGVFEFL 153 (346)
T ss_pred ceeeecccCCCCCCceeeccchHHHHHHHHHHHHHH-HHHH----------HHHhccH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 445678899999999999999999 9999 5544332 89999999999999999999
Q ss_pred HhhcccCCCCcc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCC-
Q 036560 178 IKNIIVHIPPDI-KIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDM- 255 (420)
Q Consensus 178 ~e~~l~~l~~~~-~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~~- 255 (420)
.++++|.++++. ...+++||+++++++|+.|||||||||+|+||+.++ ++++||||||+|+++||++|.+.+.+...
T Consensus 154 ~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~~~-~~~sliAKLa~~~~~~y~~A~~~l~~~~~~ 232 (346)
T cd09247 154 AHDELPRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEEKG-TSPSLLAKLHYGATQFLEEAKNVLRSLATD 232 (346)
T ss_pred HhccccccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 999999875433 245678999999999999999999999999999986 89999999999999999999999987542
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhh
Q 036560 256 NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAM 335 (420)
Q Consensus 256 ~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~ 335 (420)
...+.++|+.|+++|..+|+|+||||+|+++++ +++||++|++|+.|.+.++++++.+..+ .....
T Consensus 233 ~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~---~~k~GeaIa~L~~A~~~l~~~~~~~~~~-----------~~~~~ 298 (346)
T cd09247 233 LKDLDPRFLRFISSCIALHEARSQLYLARRLKE---AGHIGVAVGVLREALRNLKKKLPGSDIS-----------SPVIF 298 (346)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhccCchh-----------HHHHH
Confidence 134668999999999999999999999999999 8999999999999999999988764422 13567
Q ss_pred HHHHHhHHhHHHHhhhhcCcccccccccCC--CCCCCccccccCCCCCC
Q 036560 336 KHLHQTIPEVASRKSQMYGYLLEEEKALQA--LPELPNFQLSLRPDNYE 382 (420)
Q Consensus 336 k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~--~p~lp~~~l~~~p~~~~ 382 (420)
+.+.+.|.+.+.+.+||||+|||| +||+. +|.+..-.| ++|.||.
T Consensus 299 ~~~~~~i~~~l~~a~kdNd~IY~e-~VP~~~~L~~~~~~~~-vk~ip~~ 345 (346)
T cd09247 299 RDERAEVATLLQKYEKENEVIYFE-KVPDIDELPLPEGKVI-VKPVPYK 345 (346)
T ss_pred HHHHHHHHHHHHHHHhccCeEEee-cCCCccccCCCccccc-eeecCCC
Confidence 889999999999999999999998 88854 666666666 4777664
No 14
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=100.00 E-value=8.7e-50 Score=431.25 Aligned_cols=317 Identities=20% Similarity=0.273 Sum_probs=280.7
Q ss_pred eeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhcc
Q 036560 23 VYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKE 92 (420)
Q Consensus 23 l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~kf 92 (420)
+.|| +|+|.++||..+|..||..+| |+++.+||+.+..+... . ...+.+.+||.||+.|..||
T Consensus 6 ~~~~-lK~t~e~d~~~~l~~~i~~~y~~~~~~~~~~i~~~~~lR~~a~~~~~~--~----~~~~~l~~yy~qL~~l~~r~ 78 (714)
T KOG2220|consen 6 LPIP-LKKTSEVDFLKPLSKLIQLSYGESQENRNDAIEKLEKLRNNANGVPKP--S----EGLEVLKRYYGQLCYLESRF 78 (714)
T ss_pred cCcc-cccCCccchhhhHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCCcc--h----hhhHHHHHHHHHHHHHHHhc
Confidence 7789 999999999999999999998 88999999998765321 1 12679999999999999999
Q ss_pred CCCCCcce-eEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHh
Q 036560 93 NGLEDLVE-FKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKAS 171 (420)
Q Consensus 93 p~~~~~v~-F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AA 171 (420)
|.....+. |+|+|.++++...+++.++.||++|||||||++ |+++ |++.+|.+.||+|.||.+||.||
T Consensus 79 p~~~~~~~~F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l-~s~i----------aa~~~~~~~d~~k~a~~~fq~aa 147 (714)
T KOG2220|consen 79 PMSENEIEEFTWKDAFDSGAKKVTQISLGFEKACVLFNIAAL-YSQI----------AAHQSRETVDGYKAAIAHFQAAA 147 (714)
T ss_pred CcccccccceeeeecccCCccceeeccchhhHHHHHHHHHHH-HHHH----------HHHhccCchHHHHHHHHHHHHHH
Confidence 97666555 999999998558999999999999999999999 9999 99999999999999999999999
Q ss_pred hHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 036560 172 GYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLS 251 (420)
Q Consensus 172 G~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~ 251 (420)
|+|.|++++.+ ..+|++|+++++|.++..+|+||||||||.+++.++ +++++|+||++|++.||.+|++.+.
T Consensus 148 gaf~~l~~~~~-------~~~~~~d~~~~~l~~~~~l~~AqAQec~f~ks~~d~-~~~~~iaKis~q~~~fy~~Al~~~~ 219 (714)
T KOG2220|consen 148 GAFRYLSRDAL-------GVEPLVDLSSLTLVFLRFLMLAQAQECFFYKSLTDN-PKPSIIAKLSAQVVLFYEEALKAQI 219 (714)
T ss_pred HHHHhhcHHhc-------CcccccccCHHHHHHHHHhhHHhhchheeehhhcCC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999994433 257899999999999999999999999999999984 9999999999999999999999999
Q ss_pred cCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 036560 252 GCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPL 331 (420)
Q Consensus 252 ~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~ 331 (420)
. .+.+.|.+.|+.++..|..+|.++++||+|..+.+ ++++|++|++|+.+...+++|++..... .+.+
T Consensus 220 ~-~~~~~~~~~w~~~~~~k~~~~~~v~~~~~~~~~~e---~~~~ge~i~~l~~~~~~l~~Aqk~~~~~--------~~~~ 287 (714)
T KOG2220|consen 220 G-ARADRITKEWLTLVAAKFARFAGVAYYYQSLFLHE---KSKDGEAIARLQLSLLMLSEAQKCSFGE--------FTDV 287 (714)
T ss_pred H-hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHHHHhhccc--------chhH
Confidence 8 56788999999999999999999999999999999 9999999999999999999999864431 1112
Q ss_pred hhhhHHHHHhHHhHHHHhhhhcCccccccccc--CCCCCCCccccccCCCCCCC
Q 036560 332 WGAMKHLHQTIPEVASRKSQMYGYLLEEEKAL--QALPELPNFQLSLRPDNYEL 383 (420)
Q Consensus 332 ~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp--~~~p~lp~~~l~~~p~~~~l 383 (420)
+ .....|.+.+.++.||||||||+ +|| .++|+++.+.+ ++|.+++-
T Consensus 288 ~----~~~~~~~~~lk~a~kdNdFIyhe-~vp~~~~l~~~~~~~~-vkp~~~~~ 335 (714)
T KOG2220|consen 288 I----ESLSSLEKALKEAKKDNDFIYHE-RVPKVSELPPLKAAQL-VKPLPWAV 335 (714)
T ss_pred h----hhhhHHHHHHHhhhcccchhhhc-ccccccccCCcchhHh-hcCCCccc
Confidence 2 33378888999999999999998 777 88888888888 68776554
No 15
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=98.61 E-value=2.6e-07 Score=101.49 Aligned_cols=171 Identities=11% Similarity=-0.005 Sum_probs=131.5
Q ss_pred ceeeec-CCCCCCCCCchHHHhhhhHHHH-----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 036560 21 VVVYVP-AIRIPLQSDLPRALKGVIPKEL-----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGL 88 (420)
Q Consensus 21 ~~l~iP-glK~t~~vD~~~~L~~~I~~~y-----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l 88 (420)
.+=.+| ||+++..+++..+|...|..++ |..|+..|.....+.++.-+.... .+.-..++.-+..+
T Consensus 100 ~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq~aagaf~~l~~~~~~~~~~--~d~~~~~l~~~~~l 177 (714)
T KOG2220|consen 100 KVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQAAAGAFRYLSRDALGVEPL--VDLSSLTLVFLRFL 177 (714)
T ss_pred ceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhcHHhcCcccc--cccCHHHHHHHHHh
Confidence 344555 6999999999999999999887 778888887777665332222111 22222222222222
Q ss_pred hhccCCCCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHH
Q 036560 89 TKKENGLEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLL 168 (420)
Q Consensus 89 ~~kfp~~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq 168 (420)
.+...-.+.| ++++.+ .+..+--+.+++.+++||.+|+ +++. ++..++.+.++++.+..-|+
T Consensus 178 ---~~AqAQec~f--~ks~~d--~~~~~~iaKis~q~~~fy~~Al-~~~~----------~~~~~~~~~~w~~~~~~k~~ 239 (714)
T KOG2220|consen 178 ---MLAQAQECFF--YKSLTD--NPKPSIIAKLSAQVVLFYEEAL-KAQI----------GARADRITKEWLTLVAAKFA 239 (714)
T ss_pred ---hHHhhchhee--ehhhcC--CcchHHHHHHHHHHHHHHHHHH-HHHH----------HhhhcccchhHHHHHHHHHH
Confidence 1222344555 888888 6777777889999999999999 9998 66789999999999999999
Q ss_pred HHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036560 169 KASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLG 219 (420)
Q Consensus 169 ~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~ 219 (420)
.++|++.|....+. .++..|+.+-.+-.+..+||+|||+|..+
T Consensus 240 ~~~~v~~~~~~~~~--------~e~~~~ge~i~~l~~~~~~l~~Aqk~~~~ 282 (714)
T KOG2220|consen 240 RFAGVAYYYQSLFL--------HEKSKDGEAIARLQLSLLMLSEAQKCSFG 282 (714)
T ss_pred HHHHHHHHHHHHHh--------hhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999985 46788999999999999999999999997
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.40 E-value=12 Score=41.09 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=51.8
Q ss_pred CCcceeEeecCCCCC--CcceeecchHHHHHH--------HHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHH
Q 036560 96 EDLVEFKWKNLGDYG--KQEAFVANSWFELLS--------VVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVD 165 (420)
Q Consensus 96 ~~~v~F~W~dsl~~~--~~~~~~~sl~fE~as--------VLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~ 165 (420)
+.++...|+|.-.-- ...+-..=-.||++- ..+|+|-+ |+.+ |. -.+|+.
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV-~ke~---------------~~----~d~Avs 273 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNV-YKEA---------------RI----FDRAVS 273 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHH-HHHH---------------hc----chHHHH
Confidence 446778899863210 112222222466654 56899999 8876 11 347888
Q ss_pred HHHHHh--------------------hHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 036560 166 LLLKAS--------------------GYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALG 211 (420)
Q Consensus 166 ~fq~AA--------------------G~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLA 211 (420)
++++|+ |.++...+..- ...+++|....++.++.-|
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk----------ral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK----------RALELQPNFPDAYNNLANA 329 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH----------HHHhcCCCchHHHhHHHHH
Confidence 888887 44555544441 2336788888888887643
No 17
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.34 E-value=4.3 Score=26.01 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=23.7
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 276 AAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 276 A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
|.++|..|..... .+++.+||.+++.|.++
T Consensus 1 a~~~~~~g~~~~~---~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ---LGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---hCCchHHHHHHHHHHHH
Confidence 4678888888888 88899999988888764
No 18
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=69.37 E-value=25 Score=28.05 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKA 315 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~ 315 (420)
.|..+...|..++. .+++++||.+|+.|.+.|-++.+.
T Consensus 5 ~A~~~a~~AVe~D~---~gr~~eAi~~Y~~aIe~L~q~~~~ 42 (75)
T cd02682 5 MARKYAINAVKAEK---EGNAEDAITNYKKAIEVLSQIVKN 42 (75)
T ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46667778888998 999999999999999999987664
No 19
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=68.02 E-value=26 Score=28.13 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHH
Q 036560 270 KFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASR 348 (420)
Q Consensus 270 K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~ 348 (420)
|..|=+|..+-=.|+..+| .+.--.||..|+.+...+.++..+-- |.....+.|+..+.+.+|+.+.+..
T Consensus 2 k~~~~~A~~~I~kaL~~dE---~g~~e~Al~~Y~~gi~~l~eg~ai~~------~~~~~~~~w~~ar~~~~Km~~~~~~ 71 (79)
T cd02679 2 RGYYKQAFEEISKALRADE---WGDKEQALAHYRKGLRELEEGIAVPV------PSAGVGSQWERARRLQQKMKTNLNM 71 (79)
T ss_pred chHHHHHHHHHHHHhhhhh---cCCHHHHHHHHHHHHHHHHHHcCCCC------CcccccHHHHHHHHHHHHHHHHHHH
Confidence 4556678888889999999 77888899999999999998754311 1122445788888888888665544
No 20
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=67.31 E-value=6.4 Score=24.87 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=22.4
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 276 AAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 276 A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
|-++++.|..... .+++.+|+.+++.|.++
T Consensus 1 a~~~~~lg~~~~~---~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ---LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Confidence 4567788888887 78888888888887764
No 21
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.69 E-value=27 Score=27.84 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=45.2
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcC
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYG 354 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~ 354 (420)
+|+.+...|..++. .++|.+||.+++.|.+++-.+.+. ... +|.. ...+.+||.+=+.|++....
T Consensus 5 ~Ai~~a~~Ave~D~---~g~y~eA~~~Y~~aie~l~~~~~~----~~~-----n~~~---k~~ir~K~~eYl~RAE~Lk~ 69 (76)
T cd02681 5 DAVQFARLAVQRDQ---EGRYSEAVFYYKEAAQLLIYAEMA----GTL-----NDSH---LKTIQEKSNEYLDRAQALHQ 69 (76)
T ss_pred HHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHh----cCC-----ChHH---HHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999 999999999999999999776443 111 1111 23345666666666665444
Q ss_pred c
Q 036560 355 Y 355 (420)
Q Consensus 355 ~ 355 (420)
+
T Consensus 70 ~ 70 (76)
T cd02681 70 L 70 (76)
T ss_pred H
Confidence 3
No 22
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.79 E-value=11 Score=36.75 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHH
Q 036560 276 AAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAES 312 (420)
Q Consensus 276 A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea 312 (420)
+-+||+.|..+.+ .+.|-++|..|+.|.+++.+.
T Consensus 78 vk~h~flg~~~l~---s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQ---SKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHh---hccccHHHHHHHHHHHHHhcC
Confidence 7789999999999 999999999999999887753
No 23
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=61.23 E-value=32 Score=26.17 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=45.8
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhh
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQ 351 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r 351 (420)
+|..+...|...++ .++|.+||-.++.|.+.+..+.+.- +....-+.+.+++.+-+.|++.
T Consensus 4 ~A~~~~~~Av~~D~---~g~~~~A~~~Y~~ai~~l~~~~~~~-------------~~~~~~~~l~~k~~~yl~RAE~ 64 (69)
T PF04212_consen 4 KAIELIKKAVEADE---AGNYEEALELYKEAIEYLMQALKSE-------------SNPERRQALRQKMKEYLERAEK 64 (69)
T ss_dssp HHHHHHHHHHHHHH---TTSHHHHHHHHHHHHHHHHHHHHHS-------------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHhccC-------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 57778888999999 9999999999999999999887652 1112233477777777777664
No 24
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=55.95 E-value=43 Score=26.14 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=46.8
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcC
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYG 354 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~ 354 (420)
+|.....+|...+. .++|-+|+..+..|.+.+..+.+. .+.....+.+.+++.+-+.|++....
T Consensus 5 ~A~~l~~~Av~~D~---~g~y~eA~~~Y~~aie~l~~~~k~-------------e~~~~~k~~~~~k~~eyl~RaE~LK~ 68 (75)
T cd02678 5 KAIELVKKAIEEDN---AGNYEEALRLYQHALEYFMHALKY-------------EKNPKSKESIRAKCTEYLDRAEKLKE 68 (75)
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhh-------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888 899999999999999998877553 11223345677777777777765544
Q ss_pred c
Q 036560 355 Y 355 (420)
Q Consensus 355 ~ 355 (420)
+
T Consensus 69 ~ 69 (75)
T cd02678 69 Y 69 (75)
T ss_pred H
Confidence 3
No 25
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=55.93 E-value=42 Score=26.62 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=45.1
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcC
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYG 354 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~ 354 (420)
+|..+...|..++. .++|.+|+.+++.|.+.+..+.+.- +....-+.+..+|.+-+.|++....
T Consensus 5 ~a~~l~~~Ave~D~---~g~y~eAl~~Y~~aie~l~~~lk~e-------------~d~~~k~~~r~ki~eY~~RAE~Lk~ 68 (77)
T cd02683 5 AAKEVLKRAVELDQ---EGRFQEALVCYQEGIDLLMQVLKGT-------------KDEAKKKNLRQKISEYMDRAEAIKK 68 (77)
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHhhC-------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888888 8999999999999999999876541 1122234566677666666665443
No 26
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.70 E-value=2.1e+02 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHhhHHH
Q 036560 158 DCKREAVDLLLKASGYLE 175 (420)
Q Consensus 158 eglK~A~~~fq~AAG~F~ 175 (420)
...+.|+.+|++||-+|.
T Consensus 128 ~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 568899999999998874
No 27
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=49.21 E-value=63 Score=24.97 Aligned_cols=39 Identities=26% Similarity=0.140 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 036560 273 QAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKK 314 (420)
Q Consensus 273 ~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k 314 (420)
+-.|..+--.|+..++ .+.|-+|+.+++.|.+.+..+.+
T Consensus 5 ~~~A~~li~~Av~~d~---~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 5 LSKAKELISKALKADE---AGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhc
Confidence 3456666777888888 88999999999999999888654
No 28
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.76 E-value=1.4e+02 Score=32.49 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhcCC-CCCC-ccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 036560 239 LLIYYSQAYQCLSGCD-MNHG-YGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKAC 316 (420)
Q Consensus 239 ~~~~Y~~A~~~l~~~~-~~~~-~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~ 316 (420)
...+|+...+.+.... +.+. -++....-+..|..+|+|.=.||.|...-. .++|-||+|-+-.|..++.++....
T Consensus 383 l~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a---~~K~~EAlALy~Ra~sylqe~~~~l 459 (593)
T KOG2460|consen 383 LERLYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQA---KKKYSEALALYVRAYSYLQEVNSEL 459 (593)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455665555554321 2211 234457889999999999999999999988 9999999999999999999999888
Q ss_pred hhcc
Q 036560 317 LTFS 320 (420)
Q Consensus 317 ~~~~ 320 (420)
++|-
T Consensus 460 ~s~~ 463 (593)
T KOG2460|consen 460 ESFK 463 (593)
T ss_pred hchh
Confidence 8774
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=46.82 E-value=2.8e+02 Score=29.92 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=20.1
Q ss_pred eeeecCCCCCCCCCchHHHhhhhHHHHHHHHHHHHH
Q 036560 22 VVYVPAIRIPLQSDLPRALKGVIPKELVDRLTCLRN 57 (420)
Q Consensus 22 ~l~iPglK~t~~vD~~~~L~~~I~~~yi~~L~~LR~ 57 (420)
+..+| |....+.+ .+-|....|..|+++|-
T Consensus 124 iaVLP-F~n~~~~~-----~dg~~edli~~Ls~~~~ 153 (553)
T PRK12370 124 LAILP-FQMQDQVQ-----SESLHYSIVKGLSQYAP 153 (553)
T ss_pred eEEeC-CCCCCCcc-----hhhhHHHHHHHHhhCCC
Confidence 45568 87743332 45577788889988884
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=46.73 E-value=48 Score=38.21 Aligned_cols=49 Identities=24% Similarity=0.090 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHHHHhhc
Q 036560 125 SVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNI 181 (420)
Q Consensus 125 sVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~l~e~~ 181 (420)
+|+||+|.+ +.+++.. .-...+.|.|.++.+.+-+..|--+|++|..+-
T Consensus 751 ~v~FN~a~v-~kkla~s-------~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 751 SVKFNLALV-LKKLAES-------ILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hHHhHHHHH-HHHHHHH-------HHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 489999999 8888433 233567888999999999999999999998763
No 31
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.66 E-value=1.8e+02 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.103 Sum_probs=23.8
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 036560 276 AAAYYYHGLILDKGNEPSCHVSAVCCFLAAEE 307 (420)
Q Consensus 276 A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~ 307 (420)
+-||.+.|++... .++|-+||..|+.|.+
T Consensus 149 skay~RLG~A~~~---~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 149 SKAYGRLGLAYLA---LGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHHHHHc---cCcHHHHHHHHHhhhc
Confidence 5567888888888 7888889888888876
No 32
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=41.67 E-value=96 Score=23.93 Aligned_cols=65 Identities=17% Similarity=0.058 Sum_probs=45.1
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcC
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYG 354 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~ 354 (420)
.|......|...++ .++|-+|+-.+..|.+.+..+.+.. +....-+.+.+++.+-+.|++..-.
T Consensus 5 ~a~~l~~~Av~~D~---~g~~~~Al~~Y~~a~e~l~~~~~~~-------------~~~~~k~~l~~k~~~yl~RaE~Lk~ 68 (75)
T cd02656 5 QAKELIKQAVKEDE---DGNYEEALELYKEALDYLLQALKAE-------------KEPKLRKLLRKKVKEYLDRAEFLKE 68 (75)
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhccC-------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667778888 8899999999999999888765431 1123345677788777777775544
Q ss_pred c
Q 036560 355 Y 355 (420)
Q Consensus 355 ~ 355 (420)
.
T Consensus 69 ~ 69 (75)
T cd02656 69 L 69 (75)
T ss_pred H
Confidence 3
No 33
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=37.07 E-value=55 Score=20.69 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=13.4
Q ss_pred ChhhHHHHHHHHHHHhh
Q 036560 156 SSDCKREAVDLLLKASG 172 (420)
Q Consensus 156 s~eglK~A~~~fq~AAG 172 (420)
.+.....|+.+|++||-
T Consensus 17 ~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 17 VKKDLEKALEYYKKAAE 33 (36)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 34457899999999983
No 34
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=36.33 E-value=16 Score=26.50 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=7.4
Q ss_pred CCcccccccc
Q 036560 1 MGCTSSVYAL 10 (420)
Q Consensus 1 ~~~~~~~~~~ 10 (420)
|||+.|..|+
T Consensus 1 mgcggsrada 10 (53)
T PF06989_consen 1 MGCGGSRADA 10 (53)
T ss_pred CCCCcccccc
Confidence 8999888443
No 35
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=35.91 E-value=42 Score=21.08 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=20.4
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 277 AAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 277 ~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
-+|+..|....+ .+.+.+|+..|+.|.+.
T Consensus 2 ~~~~~lg~~y~~---~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQ---LGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHH---TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhh
Confidence 356677777777 77777777777776653
No 36
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=35.11 E-value=1.6e+02 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=21.4
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH
Q 036560 276 AAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILA 310 (420)
Q Consensus 276 A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ 310 (420)
|.+++-.|..... .+++-+|+..++.|.+..+
T Consensus 46 a~~~~~lg~~~~~---~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 46 ANTLNNLGECYYR---LGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhhc
Confidence 5566666776666 6667777777777766554
No 37
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=34.25 E-value=2e+02 Score=28.05 Aligned_cols=40 Identities=18% Similarity=-0.022 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHH
Q 036560 118 NSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEF 176 (420)
Q Consensus 118 sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~ 176 (420)
+-.||-+.-+|+=|+.+|... ...++|..+|.+||-++.-
T Consensus 28 ~~~~e~Aa~~y~~Aa~~fk~~-------------------~~~~~A~~ay~kAa~~~~~ 67 (282)
T PF14938_consen 28 KPDYEEAADLYEKAANCFKLA-------------------KDWEKAAEAYEKAADCYEK 67 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-------------------T-CHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-------------------hccchhHHHHHHHHHHHHH
Confidence 468888888888888744332 3678888888888877754
No 38
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=33.60 E-value=1.3e+02 Score=22.57 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHH
Q 036560 120 WFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLE 175 (420)
Q Consensus 120 ~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~ 175 (420)
..+.+.+++|||.+ |... ....+|..+|++|--+++
T Consensus 42 ~~~~a~~~~~lg~~-~~~~-------------------g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 42 HPDTANTLNNLGEC-YYRL-------------------GDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHT-------------------THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHHc-------------------CCHHHHHHHHHHHHhhhc
Confidence 45678999999999 7655 236889999999877664
No 39
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=33.10 E-value=90 Score=20.10 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=13.6
Q ss_pred ChhhHHHHHHHHHHHhh
Q 036560 156 SSDCKREAVDLLLKASG 172 (420)
Q Consensus 156 s~eglK~A~~~fq~AAG 172 (420)
...+.+.|..+|++||-
T Consensus 20 ~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 20 VPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHH
Confidence 33458999999999983
No 40
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=32.65 E-value=8e+02 Score=28.06 Aligned_cols=81 Identities=11% Similarity=-0.013 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHH-HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCC--CccchhHHHHHHHHH
Q 036560 196 DLQDGVLEAISIQ-ALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNH--GYGKKHLWFIKWKFL 272 (420)
Q Consensus 196 DLs~~~L~aL~~l-mLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~~~~--~~~~k~~~~v~~K~~ 272 (420)
.|-|.+-+++... |--||.||++.+.... . |-=+|---.-|.+|.+..+...++. ..-.+...++--+..
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s~pk----a---Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~ 925 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRSLPK----A---AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN 925 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhccCcH----H---HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc
Confidence 4667777777665 8899999999875432 1 2223445567888888877665421 122333445555666
Q ss_pred HHHHHHHHHHh
Q 036560 273 QAKAAAYYYHG 283 (420)
Q Consensus 273 ~f~A~A~y~~~ 283 (420)
+..|++.++.+
T Consensus 926 ~~eaIe~~Rka 936 (1189)
T KOG2041|consen 926 HMEAIEKDRKA 936 (1189)
T ss_pred hHHHHHHhhhc
Confidence 77777777776
No 41
>PF15506 OCC1: OCC1 family
Probab=31.26 E-value=26 Score=26.15 Aligned_cols=7 Identities=57% Similarity=1.160 Sum_probs=6.8
Q ss_pred CCccccc
Q 036560 1 MGCTSSV 7 (420)
Q Consensus 1 ~~~~~~~ 7 (420)
|||+.|+
T Consensus 1 MGCGNST 7 (62)
T PF15506_consen 1 MGCGNST 7 (62)
T ss_pred CCccccc
Confidence 9999999
No 42
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=30.64 E-value=1.9e+02 Score=22.71 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=46.9
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcC
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYG 354 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~ 354 (420)
+|+....+|...+. .++|-+|+..+..|.+.+-.+.+... ....-+.+..++.+-+.|++....
T Consensus 5 ~Ai~lv~~Av~~D~---~g~y~eA~~lY~~ale~~~~~~k~e~-------------~~~~k~~lr~k~~eyl~RAE~LK~ 68 (75)
T cd02684 5 KAIALVVQAVKKDQ---RGDAAAALSLYCSALQYFVPALHYET-------------DAQRKEALRQKVLQYVSRAEELKA 68 (75)
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHhhCC-------------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888 88999999999999998887654311 112234677788888888876655
Q ss_pred cc
Q 036560 355 YL 356 (420)
Q Consensus 355 ~I 356 (420)
+|
T Consensus 69 ~l 70 (75)
T cd02684 69 LI 70 (75)
T ss_pred HH
Confidence 44
No 43
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.33 E-value=2e+02 Score=22.67 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=45.9
Q ss_pred HHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhc
Q 036560 274 AKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMY 353 (420)
Q Consensus 274 f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N 353 (420)
.+|+.....|...+. .++|.+|+-+++.|.+.+..+.+-- +...--+.+..||.+-+.|++.+.
T Consensus 4 ~~A~~l~~~Ave~d~---~~~y~eA~~~Y~~~i~~~~~~~k~e-------------~~~~~k~~ir~K~~eYl~RAE~i~ 67 (75)
T cd02677 4 EQAAELIRLALEKEE---EGDYEAAFEFYRAGVDLLLKGVQGD-------------SSPERREAVKRKIAEYLKRAEEIL 67 (75)
T ss_pred HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHhccC-------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888 8899999999999999888765420 111223456778877888887544
No 44
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=30.06 E-value=22 Score=18.47 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=8.6
Q ss_pred HHHHHHHHhhHH
Q 036560 163 AVDLLLKASGYL 174 (420)
Q Consensus 163 A~~~fq~AAG~F 174 (420)
|.+++++||-||
T Consensus 1 A~~~y~~Aa~~y 12 (12)
T PF02071_consen 1 AIKCYEKAAECY 12 (12)
T ss_pred CcHHHHHHHhhC
Confidence 457788888765
No 45
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=29.48 E-value=35 Score=19.41 Aligned_cols=27 Identities=26% Similarity=0.060 Sum_probs=16.1
Q ss_pred HHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 036560 278 AYYYHGLILDKGNEPSCHVSAVCCFLAAEE 307 (420)
Q Consensus 278 A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~ 307 (420)
+++..|..+.. .+++..++.+++.+.+
T Consensus 3 ~~~~~a~~~~~---~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLK---LGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence 34455555555 5667777777766543
No 46
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=25.74 E-value=64 Score=23.64 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=20.5
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 276 AAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 276 A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
|.+++..|..+.. .++|.+||..|+.|.++
T Consensus 3 a~~~~~~g~~~~~---~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ---QGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHc
Confidence 4566667777776 67777777777766664
No 47
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=24.04 E-value=99 Score=20.18 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=17.5
Q ss_pred HHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 279 YYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 279 ~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
+...|.+... .+.|.+||..++.|..+
T Consensus 2 l~~Lg~~~~~---~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQ---QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHH---CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHh
Confidence 4455556666 67788888888876643
No 48
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=23.76 E-value=1.4e+02 Score=30.41 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 036560 273 QAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESK 313 (420)
Q Consensus 273 ~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~ 313 (420)
.-+|.++|..|...+. .++.|+||-.++.|.+...+.+
T Consensus 16 ~kkA~~l~~~av~~Eq---~G~l~dai~fYR~AlqI~~diE 53 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKEQ---DGSLYDAINFYRDALQIVPDIE 53 (366)
T ss_pred HHHHHHHHHHHHHHhh---cCcHHHHHHHHHhhhcCCchHH
Confidence 4579999999988888 8899999999999887554443
No 49
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=23.25 E-value=3.1e+02 Score=20.12 Aligned_cols=13 Identities=31% Similarity=0.194 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHh
Q 036560 271 FLQAKAAAYYYHG 283 (420)
Q Consensus 271 ~~~f~A~A~y~~~ 283 (420)
..||-|++||..|
T Consensus 3 ~lY~lAig~ykl~ 15 (53)
T PF14853_consen 3 CLYYLAIGHYKLG 15 (53)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhh
Confidence 4578899998776
No 50
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=22.94 E-value=35 Score=26.02 Aligned_cols=7 Identities=57% Similarity=1.170 Sum_probs=5.8
Q ss_pred CCccccc
Q 036560 1 MGCTSSV 7 (420)
Q Consensus 1 ~~~~~~~ 7 (420)
|||+.|+
T Consensus 1 MGC~~SK 7 (60)
T PF04783_consen 1 MGCSQSK 7 (60)
T ss_pred CCCCccc
Confidence 8888887
No 51
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=22.76 E-value=1e+02 Score=19.76 Aligned_cols=31 Identities=16% Similarity=-0.075 Sum_probs=16.1
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH
Q 036560 277 AAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILA 310 (420)
Q Consensus 277 ~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ 310 (420)
.++...|..+.. .+++.+|+..++.|....+
T Consensus 3 ~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRA---QGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHH---CT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHh---hhhcchhhHHHHHHHHHHH
Confidence 344444555555 5566666666666655443
No 52
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.81 E-value=2.5e+02 Score=29.78 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHh
Q 036560 265 WFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPE 344 (420)
Q Consensus 265 ~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~ 344 (420)
.+-.+...|-+|++.--+|+..+| -+..|++++.|..+..++.+...+.... -.-+..+.|.+...|.+++.+
T Consensus 11 ~~a~Ir~ayk~A~~~V~~gl~~dE---~~~~e~a~~~Ye~gl~~i~~GIpvg~k~----k~~~~~~~W~dAcaliQklke 83 (560)
T KOG2709|consen 11 DTAQIRAAYKGAYASVEQGLCYDE---VNDWENALAMYEKGLNLIVEGIPVGEKM----KNARKSEMWKDACALIQKLKE 83 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhh---hcCHHHHHHHHHHHHHHHHhcCcccccc----cccccchhhHHHHHHHHHHHH
Confidence 355667778889999999999999 8899999999999999988732221110 122345678877677777654
Q ss_pred HHH
Q 036560 345 VAS 347 (420)
Q Consensus 345 ~~~ 347 (420)
...
T Consensus 84 s~~ 86 (560)
T KOG2709|consen 84 SKS 86 (560)
T ss_pred HHH
Confidence 444
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=20.95 E-value=4e+02 Score=21.91 Aligned_cols=16 Identities=25% Similarity=-0.074 Sum_probs=9.5
Q ss_pred CCchhHHHHHHHHHHH
Q 036560 292 PSCHVSAVCCFLAAEE 307 (420)
Q Consensus 292 ~~~~GeaIa~L~~A~~ 307 (420)
.+++..++..++.+.+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4456666666665554
No 54
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=20.73 E-value=44 Score=24.28 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=9.5
Q ss_pred CCccccc--cccC
Q 036560 1 MGCTSSV--YALG 11 (420)
Q Consensus 1 ~~~~~~~--~~~~ 11 (420)
|||.-|+ .+.|
T Consensus 1 mgcapsihVSqSg 13 (52)
T PF08629_consen 1 MGCAPSIHVSQSG 13 (52)
T ss_pred CCcCCcEeEcccc
Confidence 9999999 6777
Done!