Query 036560
Match_columns 420
No_of_seqs 223 out of 470
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:40:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rau_A Tyrosine-protein phosph 100.0 3.2E-73 1.1E-77 575.1 29.4 321 21-383 10-348 (363)
2 3c3r_A Programmed cell death 6 100.0 2.4E-72 8.3E-77 572.0 35.5 328 21-391 24-373 (380)
3 3r9m_A BRO1 domain-containing 100.0 8.5E-72 2.9E-76 567.3 35.9 346 26-395 11-372 (376)
4 1zb1_A BRO1 protein; AIP1, BRO 100.0 5E-68 1.7E-72 542.4 28.6 305 17-364 5-331 (392)
5 2xs1_A Programmed cell death 6 100.0 8.9E-67 3E-71 568.1 35.0 328 21-391 9-358 (704)
6 4gcn_A Protein STI-1; structur 76.9 17 0.00059 28.9 9.6 30 275-307 82-111 (127)
7 3rkv_A Putative peptidylprolyl 65.4 53 0.0018 26.6 12.4 39 120-178 7-45 (162)
8 2v6y_A AAA family ATPase, P60 64.9 22 0.00076 27.4 7.1 66 275-356 10-75 (83)
9 2crb_A Nuclear receptor bindin 64.4 4.6 0.00016 32.4 3.0 34 279-315 18-51 (97)
10 3q15_A PSP28, response regulat 61.4 66 0.0023 30.2 11.5 34 121-174 138-171 (378)
11 2w2u_A Hypothetical P60 katani 59.0 24 0.00082 27.3 6.3 62 275-352 18-79 (83)
12 3eab_A Spastin; spastin, MIT, 58.0 19 0.00065 28.5 5.6 77 265-349 5-81 (89)
13 4a5x_A MITD1, MIT domain-conta 57.3 25 0.00084 27.4 6.1 65 274-354 14-78 (86)
14 1wfd_A Hypothetical protein 15 56.6 25 0.00085 27.7 6.1 37 275-314 14-50 (93)
15 3ulq_A Response regulator aspa 55.7 1.2E+02 0.004 28.4 12.1 35 120-174 139-173 (383)
16 2cpt_A SKD1 protein, vacuolar 54.9 17 0.0006 30.0 5.2 67 275-356 17-83 (117)
17 2dl1_A Spartin; SPG20, MIT, st 54.1 46 0.0016 27.6 7.5 82 264-353 10-92 (116)
18 3u3w_A Transcriptional activat 53.9 87 0.003 28.2 10.6 34 121-174 152-185 (293)
19 2v6x_A Vacuolar protein sortin 52.5 33 0.0011 26.3 6.2 63 275-353 12-74 (85)
20 4gyw_A UDP-N-acetylglucosamine 49.1 1.1E+02 0.0038 32.7 11.8 28 124-171 9-36 (723)
21 3gyz_A Chaperone protein IPGC; 49.1 1.1E+02 0.0039 25.3 11.4 116 156-308 7-133 (151)
22 3vtx_A MAMA; tetratricopeptide 46.7 1.2E+02 0.004 24.7 10.9 30 122-171 3-32 (184)
23 2qfc_A PLCR protein; TPR, HTH, 41.6 1.5E+02 0.0051 26.6 10.0 34 122-175 153-186 (293)
24 2h80_A STAR-related lipid tran 38.8 34 0.0012 26.3 4.0 59 148-207 9-69 (81)
25 1ihg_A Cyclophilin 40; ppiase 30.4 1.3E+02 0.0046 28.8 8.0 40 118-177 217-256 (370)
26 4a1s_A PINS, partner of inscut 28.2 3.5E+02 0.012 24.8 12.4 33 122-174 84-116 (411)
27 2ifu_A Gamma-SNAP; membrane fu 27.9 3.1E+02 0.011 24.8 9.8 34 121-174 73-106 (307)
28 4gyw_A UDP-N-acetylglucosamine 24.0 4.5E+02 0.015 27.9 11.4 31 278-311 147-177 (723)
29 1p5q_A FKBP52, FK506-binding p 23.9 2.9E+02 0.0098 25.7 8.9 105 122-308 145-259 (336)
30 1kt0_A FKBP51, 51 kDa FK506-bi 23.6 2.1E+02 0.0072 28.1 8.2 105 122-308 266-380 (457)
31 4abn_A Tetratricopeptide repea 21.3 5.7E+02 0.02 24.9 12.3 12 160-171 153-164 (474)
32 2ko6_A Uncharacterized protein 21.3 39 0.0013 26.3 1.6 18 24-41 64-81 (89)
No 1
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-73 Score=575.12 Aligned_cols=321 Identities=17% Similarity=0.166 Sum_probs=288.8
Q ss_pred ceeeecCCCCCCCCCchHHHhhhhHHHH----------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 036560 21 VVVYVPAIRIPLQSDLPRALKGVIPKEL----------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTK 90 (420)
Q Consensus 21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y----------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~ 90 (420)
|||.|| ||+|.+|||+.||++||.++| |++|++||++++++..+ .++ ++.|.+||+||++|+.
T Consensus 10 pmi~l~-lK~t~~vd~~~~L~~~I~~~y~e~~~~~~~~l~~l~~LR~~~~~~~~~-----~~g-~~~L~~Yy~qL~~l~~ 82 (363)
T 3rau_A 10 PMIWLD-LKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVPRD-----FEG-CSVLRKYLGQLHYLQS 82 (363)
T ss_dssp CCCCCC-CCCEEEECCHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHTCCSS-----HHH-HHHHHHHHHHHHHHHH
T ss_pred CccCCC-CCcCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCCCC-----HHH-HHHHHHHHHHHHHHHh
Confidence 689999 999999999999999999998 99999999999875433 222 6899999999999999
Q ss_pred ccCC---CCCcceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHH
Q 036560 91 KENG---LEDLVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLL 167 (420)
Q Consensus 91 kfp~---~~~~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~f 167 (420)
|||. .+.+|.|+|+|+|++ ++++++|++||++|||||||++ |||+ |+.++|.++||+|.||++|
T Consensus 83 rfp~~~~~~~~i~F~W~ds~~~--~~~~~~sl~fE~a~VLfNiaal-~s~~----------a~~~~r~~~~glK~A~~~f 149 (363)
T 3rau_A 83 RVPMGSGQEAAVPVTWTEIFSG--KSVAHEDIKYEQACILYNLGAL-HSML----------GAMDKRVSEEGMKVSCTHF 149 (363)
T ss_dssp HSCCSTTCTTCCCEEEECTTTC--CEEEESCHHHHHHHHHHHHHHH-HHHH----------HHHSCCCSHHHHHHHHHHH
T ss_pred cCCCCcccccceeEEeecccCC--ccccccCHHHHHHHHHHHHHHH-HHHH----------HHHhccCChHHHHHHHHHH
Confidence 9983 346899999999998 6899999999999999999999 9999 8889999999999999999
Q ss_pred HHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 036560 168 LKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAY 247 (420)
Q Consensus 168 q~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~ 247 (420)
|+|||+|+||++++. ..|++||++++|++|+.+||||||||+|+||+.++ +++++|||||+|++++|++|+
T Consensus 150 q~AAG~f~~l~~~~~--------~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~-~k~~liAkLa~q~~~~Y~~a~ 220 (363)
T 3rau_A 150 QCAAGAFAYLREHFP--------QAYSVDMSRQILTLNVNLMLGQAQECLLEKSMLDN-RKSFLVARISAQVVDYYKEAC 220 (363)
T ss_dssp HHHHHHHHHHHHHCC--------SCSSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHH
Confidence 999999999999984 35788999999999999999999999999999986 699999999999999999999
Q ss_pred HHhhcCCC---CCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 036560 248 QCLSGCDM---NHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPP 324 (420)
Q Consensus 248 ~~l~~~~~---~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p 324 (420)
+.+++.+. .+.++++|+.|+++|..||+|+||||+|+.+.+ .++||++|+||+.|.+++++|.+.++.+
T Consensus 221 ~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~k~~----- 292 (363)
T 3rau_A 221 RALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEE---QQKFGERVAYFQSALDKLNEAIKLAKGQ----- 292 (363)
T ss_dssp HHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH---hhhHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 99987653 345778999999999999999999999999999 8999999999999999999999998732
Q ss_pred CCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCCCC
Q 036560 325 TTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNYEL 383 (420)
Q Consensus 325 ~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~~l 383 (420)
...+.+.++.+.++|.+.+.+++||||+|||+ +||+ ++|+++..+| ++|.||+.
T Consensus 293 ---~~~~~~~~~~~~~~i~~~l~~aekdNd~IY~~-~VP~~~~L~~i~~~~l-vk~~p~~~ 348 (363)
T 3rau_A 293 ---PDTVQDALRFTMDVIGGKYNSAKKDNDFIYHE-AVPALDTLQPVKGAPL-VKPLPVNP 348 (363)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCGGGSCCCCCCCC-CCCCCCCT
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cCCCccccCCCCCCcc-ccCCCCCc
Confidence 11234456778899999999999999999998 8885 6888888888 68877663
No 2
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=100.00 E-value=2.4e-72 Score=572.04 Aligned_cols=328 Identities=16% Similarity=0.173 Sum_probs=298.5
Q ss_pred ceeeecCCCCCCCCCchHHHhhhhHHHH-------------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHH
Q 036560 21 VVVYVPAIRIPLQSDLPRALKGVIPKEL-------------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIG 87 (420)
Q Consensus 21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y-------------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~ 87 (420)
+|+.|| ||+|.+|||..+|++||.++| |++|++||++++....+ .. .+ .++.|.+||+||.+
T Consensus 24 ~~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~~~--~~-~~-~~~~L~~Y~~~L~~ 98 (380)
T 3c3r_A 24 TFISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLD--KH-EG-ALETLLRYYDQICS 98 (380)
T ss_dssp CCCCCC-CCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSSCC--CS-HH-HHHHHHHHHHHHHH
T ss_pred cccCCC-CCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcCCC--cC-hH-HHHHHHHHHHHHHH
Confidence 489999 999999999999999999885 89999999999764222 22 22 37899999999999
Q ss_pred hhhccCC--CCCcceeEeecCCCC-----CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhH
Q 036560 88 LTKKENG--LEDLVEFKWKNLGDY-----GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCK 160 (420)
Q Consensus 88 l~~kfp~--~~~~v~F~W~dsl~~-----~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~egl 160 (420)
|+.|||. .+.+|.|+|+|+|++ ++.+++++|++||++|||||||++ ||++ |..++|.++||+
T Consensus 99 l~~rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal-~s~~----------A~~~~r~~~egl 167 (380)
T 3c3r_A 99 IEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQI----------AAEQNLDNDEGL 167 (380)
T ss_dssp HTTTTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHH-HHHH----------HHTSCTTSHHHH
T ss_pred HHcCCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHH----------HHHhcCCChHHH
Confidence 9999984 357899999999974 247899999999999999999999 9999 888999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 036560 161 REAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL 240 (420)
Q Consensus 161 K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~ 240 (420)
|.||++||+|||+|+||++++++.++ ..|++||++++|++|+.+||||||||+|+||+.++ +|+++|||||+|++
T Consensus 168 K~A~~~fq~AAG~f~~l~~~~l~~~~----~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~-~k~~liAkLa~~~~ 242 (380)
T 3c3r_A 168 KIAAKHYQFASGAFLHIKETVLSALS----REPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDK-MKDAIIAKLANQAA 242 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS----SCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC----CCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHH
Confidence 99999999999999999999998764 46789999999999999999999999999999985 79999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 036560 241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFS 320 (420)
Q Consensus 241 ~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~ 320 (420)
++|++|.+.+. ..+.+++.|+.|+++|..+|+|+||||+|+.+.+ +++||++|+||+.|.++++++.+.++.|.
T Consensus 243 ~~Y~~A~~~l~---~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~ 316 (380)
T 3c3r_A 243 DYFGDAFKQCQ---YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QKKFGEEIARLQHAAELIKTVASRYDEYV 316 (380)
T ss_dssp HHHHHHHHHHT---TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 99999999998 4567889999999999999999999999999999 99999999999999999999999886542
Q ss_pred CCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCccccccccc--CCCCCCCccccccCCCCCCCCCCCcccc
Q 036560 321 LAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKAL--QALPELPNFQLSLRPDNYELPEIDQAWN 391 (420)
Q Consensus 321 ~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp--~~~p~lp~~~l~~~p~~~~lp~~~~~w~ 391 (420)
.++.+.++|++.+.+++||||+|||+ +|| .++|+++.++| ++|+||++|+ ++.|+
T Consensus 317 -------------~l~~l~~~i~~~l~~a~kdNd~IY~e-~VP~~~~Lp~i~~~~l-vk~~~~~~p~-~~~~~ 373 (380)
T 3c3r_A 317 -------------NVKDFSDKINRALAAAKKDNDFIYHD-RVPDLKDLDPIGKATL-VKSTPVNVPI-SQKFT 373 (380)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHTTCC-CCCCGGGSCCCCCCCC-CCCCCCCSCC-SSSCC
T ss_pred -------------hHHHHHHHHHHHHHHHHHhhCeeccc-CCCCcccCCCCCCCce-ecccCCCCCC-ccchh
Confidence 25789999999999999999999987 888 78999999999 8999999988 99996
No 3
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=100.00 E-value=8.5e-72 Score=567.29 Aligned_cols=346 Identities=20% Similarity=0.298 Sum_probs=302.7
Q ss_pred cCCCCCCCCCchHHHh--hhhHHHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhccCC------CCC
Q 036560 26 PAIRIPLQSDLPRALK--GVIPKELVDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIGLTKKENG------LED 97 (420)
Q Consensus 26 PglK~t~~vD~~~~L~--~~I~~~yi~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~l~~kfp~------~~~ 97 (420)
| ||.|..|+|..-+. +-.....+++++.+|++++.+.+++ +.+...++++|.+||++|++|..+|+. ++.
T Consensus 11 ~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~~~~-~~~~~~~~~~l~~Yl~~L~~l~~~~~~~~~~~~l~~ 88 (376)
T 3r9m_A 11 P-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFTDL-SCNPEMMKNAADSYFSLLQGFINSLDESTQESKLRY 88 (376)
T ss_dssp C-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHTTCT-TCCHHHHHHHHHHHHHHHGGGTBCSSCTTCBCTTTT
T ss_pred C-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence 7 99999999963221 2223345999999999999988886 445677889999999999999998863 347
Q ss_pred cceeEeecCCCCCCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCccccc---ccCCChhhHHHHHHHHHHHhhHH
Q 036560 98 LVEFKWKNLGDYGKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLA---VRVLSSDCKREAVDLLLKASGYL 174 (420)
Q Consensus 98 ~v~F~W~dsl~~~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~---~~r~s~eglK~A~~~fq~AAG~F 174 (420)
+|.|+|+|+|++ ..+++++|++||++|||||||++ |||+ |.. .+|.++||+|.||++||+|||+|
T Consensus 89 ~i~F~W~dsl~~-~~~~~~~sl~fE~a~VLfNiaal-~sq~----------A~~~~~~~r~~~e~lK~A~~~fq~AAG~f 156 (376)
T 3r9m_A 89 IQNFKWTDTLQG-QVPSAQQDAVFELISMGFNVALW-YTKY----------ASRLAGKENITEDEAKEVHRSLKIAAGIF 156 (376)
T ss_dssp SCCEEECCTTST-TCCEEESCHHHHHHHHHHHHHHH-HHHH----------HHHHHTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEeeCCCCC-CCceecccHHHHHHHHHHHHHHH-HHHH----------HHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 899999999986 48899999999999999999999 9999 544 36889999999999999999999
Q ss_pred HHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 036560 175 EFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCD 254 (420)
Q Consensus 175 ~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~ 254 (420)
+||++++++.+.+ ...|++||++++|++|+.+||||||||+|+||+.+ |+++++|||||+|++++|++|.+.+++.
T Consensus 157 ~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~-~~k~~liAKLa~q~~~~Y~~a~~~l~~~- 232 (376)
T 3r9m_A 157 KHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIEL-KHAPGLIAALAYETANFYQKADHTLSSL- 232 (376)
T ss_dssp HHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999987632 13578999999999999999999999999999998 5899999999999999999999999863
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCCCCch
Q 036560 255 MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPP--TTRSPPLW 332 (420)
Q Consensus 255 ~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p--~~~~p~~~ 332 (420)
.+.++.+|+.|+++|..||.|+||||+|+.+.+ +++||++|+||+.|.++++++.+.|++|....| .+..|...
T Consensus 233 -~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T 3r9m_A 233 -EPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLA---SDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGH 308 (376)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCCGGGS
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchh
Confidence 456778999999999999999999999999999 899999999999999999999999999987653 23333333
Q ss_pred hhhHHHHHhHHhHHHHhhhhcCcccccccccCCCCCC---CccccccCCCCCCCCCCCcccccccc
Q 036560 333 GAMKHLHQTIPEVASRKSQMYGYLLEEEKALQALPEL---PNFQLSLRPDNYELPEIDQAWNTEKW 395 (420)
Q Consensus 333 ~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~~~p~l---p~~~l~~~p~~~~lp~~~~~w~~~~~ 395 (420)
...+.+.+.|.+.+.+++||||+|||| +||+++|.+ |.|+| |+|+||++|++||.|+.+..
T Consensus 309 ~~~~~l~~~i~~~l~~a~kdNd~IY~~-~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~~~~~ 372 (376)
T 3r9m_A 309 LFFRKLGNLVKNTLEKCQRENGFIYFQ-KIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWTPETL 372 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccceecc-cCCCCCCCcccccccce-ecCcCCCCCCCChhhhHHHH
Confidence 347788899999999999999999998 999999999 67999 89999999999999997643
No 4
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-68 Score=542.42 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=271.0
Q ss_pred CCCCceeeecCCCCCCCCCchHHHhhhhHHHH------------HH-HHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 036560 17 TIPEVVVYVPAIRIPLQSDLPRALKGVIPKEL------------VD-RLTCLRNQIVLVAEDTDGSAITELRRALEEYLT 83 (420)
Q Consensus 17 ~~~~~~l~iPglK~t~~vD~~~~L~~~I~~~y------------i~-~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~ 83 (420)
.+..+|+.|| ||+|++|||..+|++||.++| |. +|++||++++++.. ...++++|.+||+
T Consensus 5 ~m~~~~l~~p-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~~lR~~~~~~~~------~~~~~~~l~~Y~~ 77 (392)
T 1zb1_A 5 SMKPYLFDLK-LKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELA------PSSLSEQNLKYYS 77 (392)
T ss_dssp -CCCCCCCCC-CCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHHHHHHHTTSSCC------HHHHHHHHHHHHH
T ss_pred hcccccccCC-CCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHH
Confidence 4677899999 999999999999999998877 68 99999999976421 2334899999999
Q ss_pred HHHHhhhccCC--CCCcceeEeecCCCC---CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChh
Q 036560 84 LLIGLTKKENG--LEDLVEFKWKNLGDY---GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSD 158 (420)
Q Consensus 84 qL~~l~~kfp~--~~~~v~F~W~dsl~~---~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~e 158 (420)
||.+|+.|||. .+.+|.|+|+|+|++ +..+++++|++||++|||||+|+| |||+ |..++|.
T Consensus 78 ~L~~l~~rf~~~~~~~~i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~----------A~~~~r~--- 143 (392)
T 1zb1_A 78 FLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVI-FTQI----------ARENINE--- 143 (392)
T ss_dssp HHHHHHHHHGGGGGGGCCCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHH-HHHH----------HHHTTTS---
T ss_pred HHHHHHhcCCCCCCcccceeeeecccccccCCCCceeccchHHHHHHHHHHHHHH-HHHH----------HHHhchH---
Confidence 99999999983 357899999999962 138999999999999999999999 9999 7777775
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh--cccchhHHHHHH
Q 036560 159 CKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDC--QKATLSVKRRLA 236 (420)
Q Consensus 159 glK~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~--~K~k~sliAkLA 236 (420)
|+|.||++||+|||+|+||++++++ .|++||++++|++|+.+||||||||+|+||+.+ .++++++|||||
T Consensus 144 ~lk~A~~~fq~AAG~f~~l~~~~~~--------~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~~k~~liAkLa 215 (392)
T 1zb1_A 144 DYKNSIANLTKAFSCFEYLSENFLN--------SPSVDLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKLS 215 (392)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCC--------CSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHHH
Confidence 8999999999999999999999963 578999999999999999999999999999984 258999999999
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 036560 237 CELLIYYSQAYQCLSGCD--MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKK 314 (420)
Q Consensus 237 ~q~~~~Y~~A~~~l~~~~--~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k 314 (420)
+|++++|++|.+.+.+.+ +.+.+++.|+.|+++|..+|+|+||||+|+.+.+ +++||++|+||+.|.++++++.+
T Consensus 216 ~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~ 292 (392)
T 1zb1_A 216 RATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEE---ENRVGEAIAFLDFSMQQLISSLP 292 (392)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4477899999999999999999999999999999 99999999999999999999998
Q ss_pred HHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC
Q 036560 315 ACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ 364 (420)
Q Consensus 315 ~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~ 364 (420)
.++.+. +.. +++.+.++|++.+.+++||||+|||| +||+
T Consensus 293 ~~~~~~--------~~~--d~~~l~~~i~~~l~~a~kdNd~IY~e-~VP~ 331 (392)
T 1zb1_A 293 FKTWLV--------EFI--DFDGFKETLEKKQKELIKDNDFIYHE-SVPA 331 (392)
T ss_dssp GCTTTT--------TTS--CHHHHHHHHHHHHHHHHHHHHSSSCC-CCCS
T ss_pred hhhccc--------hHH--HHHHHHHHHHHHHHHHHHHhCccCcC-CCCC
Confidence 765321 122 36799999999999999999999996 6663
No 5
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=100.00 E-value=8.9e-67 Score=568.14 Aligned_cols=328 Identities=16% Similarity=0.170 Sum_probs=295.7
Q ss_pred ceeeecCCCCCCCCCchHHHhhhhHHHH-------------HHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHH
Q 036560 21 VVVYVPAIRIPLQSDLPRALKGVIPKEL-------------VDRLTCLRNQIVLVAEDTDGSAITELRRALEEYLTLLIG 87 (420)
Q Consensus 21 ~~l~iPglK~t~~vD~~~~L~~~I~~~y-------------i~~L~~LR~~i~~~~~~~~~s~~~~l~~~L~~Y~~qL~~ 87 (420)
+|+.|| ||+|.+|||..+|++||.++| |.+|++||++++....+ .. .+ .++.|.+||+||.+
T Consensus 9 ~~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~lR~~~~~~~~~--~~-~~-~~~~L~~Y~~~L~~ 83 (704)
T 2xs1_A 9 TFISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLD--KH-EG-ALETLLRYYDQICS 83 (704)
T ss_dssp CCCCCC-CCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHTSCCC--CC-HH-HHHHHHHHHHHHHH
T ss_pred HhhcCC-CCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhCCCC--CC-HH-HHHHHHHHHHHHHH
Confidence 589999 999999999999999999774 89999999998764222 12 22 27899999999999
Q ss_pred hhhccCC--CCCcceeEeecCCCC-----CCcceeecchHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhH
Q 036560 88 LTKKENG--LEDLVEFKWKNLGDY-----GKQEAFVANSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCK 160 (420)
Q Consensus 88 l~~kfp~--~~~~v~F~W~dsl~~-----~~~~~~~~sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~egl 160 (420)
|+.|||. .+.+|.|+|+|+|++ ++.+++++|++||++|||||||++ ||++ |+.++|.+++|+
T Consensus 84 l~~rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~----------A~~~~r~~~~~l 152 (704)
T 2xs1_A 84 IEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQI----------AAEQNLDNDEGL 152 (704)
T ss_dssp HGGGSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHH-HHHH----------HHTSCTTSHHHH
T ss_pred HHcCCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHH----------HHHhCCCChHHH
Confidence 9999984 357899999999974 236899999999999999999999 9999 888999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHH
Q 036560 161 REAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELL 240 (420)
Q Consensus 161 K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~ 240 (420)
|.||++||+|||+|+||++++++.++ ..|++||++++|.+|+.+||||||||+|+||+.++ +++++|||||+|++
T Consensus 153 K~A~~~fq~AAG~f~~l~~~~l~~~~----~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~-~k~~liAkLa~~~~ 227 (704)
T 2xs1_A 153 KIAAKHYQFASGAFLHIKETVLSALS----REPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDK-MKDAIIAKLANQAA 227 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS----SCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC----CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHH
Confidence 99999999999999999999998764 46889999999999999999999999999999985 79999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 036560 241 IYYSQAYQCLSGCDMNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFS 320 (420)
Q Consensus 241 ~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~ 320 (420)
++|++|.+.+. +.+.++++|..|+++|..||+|+||||+|+.+.+ .++||++|+||+.|.++++++.+.++.|
T Consensus 228 ~~Y~~A~~~l~---~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~~~~- 300 (704)
T 2xs1_A 228 DYFGDAFKQCQ---YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QYYFGEEIARLQHAAELIKTVASRYDEY- 300 (704)
T ss_dssp HHHHHHHHHHH---TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHSTTT-
T ss_pred HHHHHHHHHHc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HhHHHHHHHHHHHHHHHHHHHHHHhcch-
Confidence 99999999998 4567889999999999999999999999999999 8999999999999999999999877544
Q ss_pred CCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcCcccccccccC--CCCCCCccccccCCCCCCCCCCCcccc
Q 036560 321 LAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYGYLLEEEKALQ--ALPELPNFQLSLRPDNYELPEIDQAWN 391 (420)
Q Consensus 321 ~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~~IY~qe~vp~--~~p~lp~~~l~~~p~~~~lp~~~~~w~ 391 (420)
+.++.+.++|++.+.++.||||+|||+ +||+ ++|+++.++| ++|.||+.|. ++.|.
T Consensus 301 ------------~~~~~l~~~i~~~l~~~~kdNd~IY~e-~VP~~~~L~~i~~~~l-vk~~~~~~p~-~~~~~ 358 (704)
T 2xs1_A 301 ------------VNVKDFSDKINRALAAAKKDNDFIYHD-RVPDLKDLDPIGKATL-VKSTPVNVPI-SQKFT 358 (704)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHTTCC-CCCCGGGSCCCCCCCC-CCCCCCCSCC-STTCC
T ss_pred ------------HhHHHHHHHHHHHHHHHHHhhCeeecc-CCCCccccCCccCccc-cccCCCCccc-ccchh
Confidence 225689999999999999999999987 8885 8999999999 6999999975 88886
No 6
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=76.92 E-value=17 Score=28.94 Aligned_cols=30 Identities=23% Similarity=0.051 Sum_probs=21.7
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEE 307 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~ 307 (420)
.|.+|+..|..... .+++-+||..++.|..
T Consensus 82 ~a~~~~~lg~~~~~---~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQK---QNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Confidence 35677788887777 7778778777776654
No 7
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=65.35 E-value=53 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.044 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHHHH
Q 036560 120 WFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCI 178 (420)
Q Consensus 120 ~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~l~ 178 (420)
.++.+..+.+.|.. +.+. | ....|+.+|++|--++....
T Consensus 7 ~~~~a~~~~~~G~~-~~~~----------~---------~~~~A~~~y~~al~~~~~~~ 45 (162)
T 3rkv_A 7 KLKSVEALRQKGNE-LFVQ----------K---------DYKEAIDAYRDALTRLDTLI 45 (162)
T ss_dssp -CHHHHHHHHHHHH-HHHT----------T---------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHc----------C---------CHHHHHHHHHHHHHHHHHhc
Confidence 45677788888887 5443 1 26789999999988776543
No 8
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=64.93 E-value=22 Score=27.37 Aligned_cols=66 Identities=23% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcC
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYG 354 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~ 354 (420)
+|+.+...|...+. .++|.+|+..++.|.+++..+.+.-. .+ ..-+.+..||.+-+.|++....
T Consensus 10 ~Ai~lv~~Ave~D~---~g~y~eAl~lY~~aie~l~~~lk~e~----------d~---~~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 10 MARKYAILAVKADK---EGKVEDAITYYKKAIEVLSQIIVLYP----------ES---VARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHCT----------TC---TTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHCC----------CH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888 99999999999999999998866411 11 1234577888888888887766
Q ss_pred cc
Q 036560 355 YL 356 (420)
Q Consensus 355 ~I 356 (420)
++
T Consensus 74 ~l 75 (83)
T 2v6y_A 74 VL 75 (83)
T ss_dssp CC
T ss_pred Hc
Confidence 65
No 9
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=64.36 E-value=4.6 Score=32.37 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=29.6
Q ss_pred HHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 036560 279 YYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKA 315 (420)
Q Consensus 279 ~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~ 315 (420)
|-+.+..+.. ..+|++||.|.+.|..++.+|.|+
T Consensus 18 ~~RrAe~ll~---~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 18 QSRRADRLLA---AGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777 889999999999999999999875
No 10
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=61.42 E-value=66 Score=30.24 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHH
Q 036560 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYL 174 (420)
Q Consensus 121 fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F 174 (420)
.+.+.+++|+|.+ |... | ....|..+|++|--+|
T Consensus 138 ~~~a~~~~~lg~~-y~~~----------~---------~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 138 IEKAEFHFKVAEA-YYHM----------K---------QTHVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHHHHHHH-HHHT----------T---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHc----------C---------CcHHHHHHHHHHHHHH
Confidence 5677777888877 6555 1 2457777777776655
No 11
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=59.01 E-value=24 Score=27.30 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=44.9
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhh
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQM 352 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~ 352 (420)
+|+.....|...+. .++|.+|+..++.|.+.+..+.+... .+ ..-+.+..|+.+-+.|++..
T Consensus 18 ~Ai~lv~~Ave~D~---~g~y~eAl~lY~~aie~l~~alk~e~----------d~---~~k~~ir~K~~eY~~RAE~L 79 (83)
T 2w2u_A 18 MARKYAINAVKADK---EGNAEEAITNYKKAIEVLAQLVSLYR----------DG---STAAIYEQMINEYKRRIEVL 79 (83)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHST----------TS---STHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHCC----------CH---HHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888 99999999999999999998866421 11 11234667777766666644
No 12
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=58.02 E-value=19 Score=28.50 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHh
Q 036560 265 WFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPE 344 (420)
Q Consensus 265 ~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~ 344 (420)
..-++|.+|=+|+-|-=.|+..+|.+..+.-.+|+-.|+.....|..+..+ |.....+.|...+.|.+|..+
T Consensus 5 ~~~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V--------~~~g~G~~we~Ar~LQ~KM~~ 76 (89)
T 3eab_A 5 EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAV--------IVTGQGEQCERARRLQAKMMT 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHS--------CCCCCSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCC--------ccCCCChhHHHHHHHHHHHHH
Confidence 345778888889999999999998322267788999999999999877543 332245678888999988876
Q ss_pred HHHHh
Q 036560 345 VASRK 349 (420)
Q Consensus 345 ~~~~k 349 (420)
++.-.
T Consensus 77 nL~~v 81 (89)
T 3eab_A 77 NLVMA 81 (89)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 13
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=57.26 E-value=25 Score=27.41 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhc
Q 036560 274 AKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMY 353 (420)
Q Consensus 274 f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N 353 (420)
-+|+.....|...+. .++|.+|+.+++.|.++|-.+.+.. +....-+.+.++|.+=+.|++...
T Consensus 14 ~~A~~lv~~Ave~D~---~g~y~eAl~lY~~Aie~ll~alk~e-------------~d~~~k~~lr~K~~eYl~RAE~LK 77 (86)
T 4a5x_A 14 TAAATVLKRAVELDS---ESRYPQALVCYQEGIDLLLQVLKGT-------------KDNTKRCNLREKISKYMDRAENIK 77 (86)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhhC-------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888 8999999999999999988776521 111223446667776666666544
Q ss_pred C
Q 036560 354 G 354 (420)
Q Consensus 354 ~ 354 (420)
.
T Consensus 78 ~ 78 (86)
T 4a5x_A 78 K 78 (86)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=56.56 E-value=25 Score=27.73 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKK 314 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k 314 (420)
+|+.....|...+. ..+|.+|+..++.|.++|..+.+
T Consensus 14 ~Ai~lv~~Ave~D~---~g~y~eAl~~Y~~Aie~l~~alk 50 (93)
T 1wfd_A 14 AAVAVLKRAVELDA---ESRYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888 89999999999999999998865
No 15
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=55.71 E-value=1.2e+02 Score=28.37 Aligned_cols=35 Identities=11% Similarity=-0.093 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHH
Q 036560 120 WFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYL 174 (420)
Q Consensus 120 ~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F 174 (420)
..+.+.+++|+|.+ |... | ....|..+|++|--+|
T Consensus 139 ~~~~a~~~~~lg~~-~~~~----------~---------~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 139 RIEKAEFFFKMSES-YYYM----------K---------QTYFSMDYARQAYEIY 173 (383)
T ss_dssp HHHHHHHHHHHHHH-HHHT----------T---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHc----------C---------CHHHHHHHHHHHHHHH
Confidence 34667778888877 6555 2 2467888888876655
No 16
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=54.95 E-value=17 Score=30.00 Aligned_cols=67 Identities=18% Similarity=0.067 Sum_probs=47.5
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhcC
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMYG 354 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N~ 354 (420)
+|+.....|...+. ..+|.+|+..|+.|.++|-.+.+.. +.....-+.+.+++.+-+.|+++...
T Consensus 17 kAi~lv~~Ave~D~---ag~y~eAl~lY~~Aie~l~~alk~e------------~~~~~~k~~lr~K~~eYl~RAE~LK~ 81 (117)
T 2cpt_A 17 KAIDLASKAAQEDK---AGNYEEALQLYQHAVQYFLHVVKYE------------AQGDKAKQSIRAKCTEYLDRAEKLKE 81 (117)
T ss_dssp HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHHTS------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHhc------------cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778888 8899999999999999998876531 11122234577777777777776665
Q ss_pred cc
Q 036560 355 YL 356 (420)
Q Consensus 355 ~I 356 (420)
+|
T Consensus 82 ~l 83 (117)
T 2cpt_A 82 YL 83 (117)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 17
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.12 E-value=46 Score=27.59 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHH
Q 036560 264 LWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIP 343 (420)
Q Consensus 264 ~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~ 343 (420)
..+-.+|.+|=+|+.|-=.|+.++| ..+--+|+..|+.....|..+..+-- ..|. -..+.|+..+.|.+|..
T Consensus 10 ~~l~~ik~~h~~AF~~Is~AL~~DE---~g~k~~Al~lYk~GI~eLe~Gl~I~~----~~~~-~~g~~we~Ar~lq~KM~ 81 (116)
T 2dl1_A 10 AEIKIIREAYKKAFLFVNKGLNTDE---LGQKEEAKNYYKQGIGHLLRGISISS----KESE-HTGPGWESARQMQQKMK 81 (116)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHSSCC----CCTT-CCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh---cCCHHHHHHHHHHHHHHHHHhccccc----cCCC-CCChhHHHHHHHHHHHH
Confidence 3456689999999999999999999 77778899999999999987754311 1111 13567988899999988
Q ss_pred hHHHHhh-hhc
Q 036560 344 EVASRKS-QMY 353 (420)
Q Consensus 344 ~~~~~k~-r~N 353 (420)
+++.... |..
T Consensus 82 ~nL~~v~~RL~ 92 (116)
T 2dl1_A 82 ETLQNVRTRLE 92 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7776554 554
No 18
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=53.88 E-value=87 Score=28.25 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHH
Q 036560 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYL 174 (420)
Q Consensus 121 fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F 174 (420)
+..+.++.|+|.+ |... | ....|..+|++|--.+
T Consensus 152 ~~~~~~~~~lg~~-y~~~----------g---------~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 152 YQNLYIENAIANI-YAEN----------G---------YLKKGIDLFEQILKQL 185 (293)
T ss_dssp THHHHHHHHHHHH-HHHT----------T---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHc----------C---------CHHHHHHHHHHHHHHH
Confidence 4567789999999 8765 2 2678999999986544
No 19
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=52.53 E-value=33 Score=26.27 Aligned_cols=63 Identities=14% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhHHHHHhHHhHHHHhhhhc
Q 036560 275 KAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAESKKACLTFSLAPPTTRSPPLWGAMKHLHQTIPEVASRKSQMY 353 (420)
Q Consensus 275 ~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~ea~k~~~~~~~~~p~~~~p~~~~~~k~l~~~i~~~~~~k~r~N 353 (420)
+|......|...+. .++|.+|+..++.|.++|-.+.+.. +....-+.+.+++.+-+.|++...
T Consensus 12 ~A~~l~~~Av~~D~---~g~y~eAl~~Y~~aie~l~~a~k~e-------------~~~~~k~~l~~k~~eYl~RAE~Lk 74 (85)
T 2v6x_A 12 KGIELVQKAIDLDT---ATQYEEAYTAYYNGLDYLMLALKYE-------------KNPKSKDLIRAKFTEYLNRAEQLK 74 (85)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHhC-------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777778888 8999999999999999998876541 111223346666666666655443
No 20
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=49.15 E-value=1.1e+02 Score=32.69 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHh
Q 036560 124 LSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKAS 171 (420)
Q Consensus 124 asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AA 171 (420)
+-.++|+|.+ |.+. | ...+|..+|++|-
T Consensus 9 a~al~nLG~~-~~~~----------G---------~~~eAi~~~~kAl 36 (723)
T 4gyw_A 9 ADSLNNLANI-KREQ----------G---------NIEEAVRLYRKAL 36 (723)
T ss_dssp HHHHHHHHHH-HHHT----------T---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHc----------C---------CHHHHHHHHHHHH
Confidence 5678999998 7665 2 2678888888874
No 21
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=49.10 E-value=1.1e+02 Score=25.26 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCCCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhccc
Q 036560 156 SSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKDLQDGVLEAISIQALG--------QGTEIQLGLAVDCQKA 227 (420)
Q Consensus 156 s~eglK~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~DLs~~~L~aL~~lmLA--------QAQE~~~~kAi~~~K~ 227 (420)
..+.++.++.-|..+.|.|.- + ..++|+...++..+... +|.++ |.+++...-.
T Consensus 7 ~~~~~~~~l~~~~~~~~~l~~----a-------------l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~al~~~P~ 68 (151)
T 3gyz_A 7 ENESISTAVIDAINSGATLKD----I-------------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVF-FRFLCIYDFY 68 (151)
T ss_dssp --CHHHHHHHHHHHTSCCTGG----G-------------CCSCHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHCCCCHHH----H-------------hCCCHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCC
Confidence 345677777777777766522 1 25777777777766543 34343 3556654311
Q ss_pred chhHHHHHH--HHHHHHHHHHHHHhhcCC-CCCCccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHH
Q 036560 228 TLSVKRRLA--CELLIYYSQAYQCLSGCD-MNHGYGKKHLWFIKWKFLQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLA 304 (420)
Q Consensus 228 k~sliAkLA--~q~~~~Y~~A~~~l~~~~-~~~~~~~k~~~~v~~K~~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~ 304 (420)
.......|+ .....-|++|...+...- +... .+.+||..|..+.. .+++-+|+.+|+.
T Consensus 69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~----------------~~~~~~~lg~~~~~---lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN----------------DYTPVFHTGQCQLR---LKAPLKAKECFEL 129 (151)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS----------------CCHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC----------------CcHHHHHHHHHHHH---cCCHHHHHHHHHH
Confidence 222222211 222223334443332210 0000 01355666666666 6677777777777
Q ss_pred HHHH
Q 036560 305 AEEI 308 (420)
Q Consensus 305 A~~~ 308 (420)
|.+.
T Consensus 130 al~l 133 (151)
T 3gyz_A 130 VIQH 133 (151)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6653
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=46.66 E-value=1.2e+02 Score=24.71 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHh
Q 036560 122 ELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKAS 171 (420)
Q Consensus 122 E~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AA 171 (420)
|-..|.+|+|.. |.+. | ...+|..+|++|-
T Consensus 3 e~~~iy~~lG~~-~~~~----------g---------~~~~A~~~~~~al 32 (184)
T 3vtx_A 3 ETTTIYMDIGDK-KRTK----------G---------DFDGAIRAYKKVL 32 (184)
T ss_dssp -CHHHHHHHHHH-HHHH----------T---------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHHc----------C---------CHHHHHHHHHHHH
Confidence 556899999998 7665 2 2678888888864
No 23
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=41.62 E-value=1.5e+02 Score=26.65 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHH
Q 036560 122 ELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLE 175 (420)
Q Consensus 122 E~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~ 175 (420)
..+.+++|+|.+ |... + ....|..+|++|--+++
T Consensus 153 ~~~~~~~~lg~~-y~~~----------~---------~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 153 QNLYIENAIANI-YAEN----------G---------YLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHHHH-HHHT----------T---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHc----------C---------CHHHHHHHHHHHHHHHH
Confidence 357789999998 7665 1 35789999999876654
No 24
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=38.81 E-value=34 Score=26.25 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=36.3
Q ss_pred ccccccCCChhhHHHHHHHHHHHhhHHHHHHhhcccCCCCccc--cCCCCCCCHHHHHHHHH
Q 036560 148 SGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIK--IMLPKDLQDGVLEAISI 207 (420)
Q Consensus 148 ~~~~~~r~s~eglK~A~~~fq~AAG~F~~l~e~~l~~l~~~~~--~~~~~DLs~~~L~aL~~ 207 (420)
+|.......+.+.|+||+.+ +|||.=+|..-.=-.++|-++. ..-..=|+.+.|++|..
T Consensus 9 ~~~~~~~~~E~eA~eAC~WL-RaaGFPQYAqlyed~qFPIdi~~VkkDH~FLd~d~l~sL~R 69 (81)
T 2h80_A 9 SGLVPRGSQEIEAKEACDWL-RAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCR 69 (81)
T ss_dssp CCCCCCSCHHHHHHHHHHHH-HHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHH
T ss_pred hhHHHHHhhHHHHHHHHHHH-HHcCCcHHHHHhhcccccccHHHhccCCCccCHHHHHHHHH
Confidence 36667778888999999987 5789889875322222343332 11223456677776654
No 25
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=30.45 E-value=1.3e+02 Score=28.77 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHHH
Q 036560 118 NSWFELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFC 177 (420)
Q Consensus 118 sl~fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~l 177 (420)
.-..+.+..++++|.. +.+. + ...+|..+|++|--++...
T Consensus 217 ~~~~~~a~~~~~~g~~-~~~~----------g---------~~~~Ai~~y~kAl~~~~~~ 256 (370)
T 1ihg_A 217 DKILLISEDLKNIGNT-FFKS----------Q---------NWEMAIKKYTKVLRYVEGS 256 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHT----------T---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHh----------c---------CHHHHHHHHHHHHHHhhcC
Confidence 3456778888888887 5443 1 2678899999988766543
No 26
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=28.15 E-value=3.5e+02 Score=24.81 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHH
Q 036560 122 ELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYL 174 (420)
Q Consensus 122 E~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F 174 (420)
..+.+++++|.+ |... | ...+|..+|++|-.++
T Consensus 84 ~~~~~~~~lg~~-~~~~----------g---------~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 84 TLSAIYSQLGNA-YFYL----------G---------DYNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHH-HHHH----------T---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHC----------C---------CHHHHHHHHHHHHHHH
Confidence 345678888888 6555 2 2567777777776544
No 27
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=27.89 E-value=3.1e+02 Score=24.76 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHH
Q 036560 121 FELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYL 174 (420)
Q Consensus 121 fE~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F 174 (420)
.+.+.++.|+|.+ |.+. + ...+|..+|++|.-++
T Consensus 73 ~~~a~~~~~lg~~-~~~~----------g---------~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 73 FHAAKAFEQAGMM-LKDL----------Q---------RMPEAVQYIEKASVMY 106 (307)
T ss_dssp HHHHHHHHHHHHH-HHHT----------T---------CGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhC----------C---------CHHHHHHHHHHHHHHH
Confidence 3556777888877 7655 2 1346777777776554
No 28
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=24.02 E-value=4.5e+02 Score=27.91 Aligned_cols=31 Identities=16% Similarity=-0.016 Sum_probs=19.1
Q ss_pred HHHHHhccccCCCCCCchhHHHHHHHHHHHHHHH
Q 036560 278 AYYYHGLILDKGNEPSCHVSAVCCFLAAEEILAE 311 (420)
Q Consensus 278 A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~l~e 311 (420)
+++..|..+.. ..++.+++.+++.+.+...+
T Consensus 147 a~~~L~~~l~~---~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 147 AYCNLAHCLQI---VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHH---TTCCTTHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHh---cccHHHHHHHHHHHHHhChh
Confidence 44444555555 56677777777777766544
No 29
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=23.86 E-value=2.9e+02 Score=25.67 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCC-----
Q 036560 122 ELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKD----- 196 (420)
Q Consensus 122 E~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~D----- 196 (420)
+.+.+++|+|.. |.+. ....+|..+|++|.-+. |.+
T Consensus 145 ~~a~~~~~~g~~-~~~~-------------------g~~~~A~~~y~~Al~~~-------------------p~~~~~~~ 185 (336)
T 1p5q_A 145 EQSTIVKERGTV-YFKE-------------------GKYKQALLQYKKIVSWL-------------------EYESSFSN 185 (336)
T ss_dssp HHHHHHHHHHHH-HHHH-------------------TCHHHHHHHHHHHHHHT-------------------TTCCCCCS
T ss_pred HHHHHHHHHHHH-HHHC-------------------CCHHHHHHHHHHHHHHh-------------------hccccCCh
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHH
Q 036560 197 -----LQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKF 271 (420)
Q Consensus 197 -----Ls~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~ 271 (420)
+.+....++.++.....+.=-|.+|+. +|++|.+.-.....
T Consensus 186 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~------------------~~~~al~~~p~~~~---------------- 231 (336)
T 1p5q_A 186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIE------------------SCNKALELDSNNEK---------------- 231 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH------------------HHHHHHHHCTTCHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH------------------HHHHHHHhCCCcHH----------------
Q ss_pred HHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 272 LQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 272 ~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
++|..|..+.. .+++-+|+..|+.|.+.
T Consensus 232 ------a~~~lg~~~~~---~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 232 ------GLSRRGEAHLA---VNDFELARADFQKVLQL 259 (336)
T ss_dssp ------HHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHH---CCCHHHHHHHHHHHHHH
No 30
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=23.60 E-value=2.1e+02 Score=28.07 Aligned_cols=105 Identities=18% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCcccccccCCChhhHHHHHHHHHHHhhHHHHHHhhcccCCCCccccCCCCC-----
Q 036560 122 ELLSVVHMMAMLTLSDANSLMIPKDFSGLAVRVLSSDCKREAVDLLLKASGYLEFCIKNIIVHIPPDIKIMLPKD----- 196 (420)
Q Consensus 122 E~asVLfNiaal~~Sq~~~~l~~~~~~~~~~~r~s~eglK~A~~~fq~AAG~F~~l~e~~l~~l~~~~~~~~~~D----- 196 (420)
+.+..++|+|.. |.+. ....+|+.+|++|.-+. |.+
T Consensus 266 ~~a~~~~~~G~~-~~~~-------------------g~~~~A~~~y~~Al~~~-------------------p~~~~~~~ 306 (457)
T 1kt0_A 266 EQAAIVKEKGTV-YFKG-------------------GKYMQAVIQYGKIVSWL-------------------EMEYGLSE 306 (457)
T ss_dssp HHHHHHHHHHHH-HHHT-------------------TCHHHHHHHHHHHHHHH-------------------TTCCSCCH
T ss_pred HHHHHHHHHHHH-HHhC-------------------CCHHHHHHHHHHHHHHh-------------------cccccCCh
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHH
Q 036560 197 -----LQDGVLEAISIQALGQGTEIQLGLAVDCQKATLSVKRRLACELLIYYSQAYQCLSGCDMNHGYGKKHLWFIKWKF 271 (420)
Q Consensus 197 -----Ls~~~L~aL~~lmLAQAQE~~~~kAi~~~K~k~sliAkLA~q~~~~Y~~A~~~l~~~~~~~~~~~k~~~~v~~K~ 271 (420)
+.+....++.++..+.-+---|.+|+. +|++|.+.-.....
T Consensus 307 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~------------------~~~~al~~~p~~~~---------------- 352 (457)
T 1kt0_A 307 KESKASESFLLAAFLNLAMCYLKLREYTKAVE------------------CCDKALGLDSANEK---------------- 352 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH------------------HHHHHHHHSTTCHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH------------------HHHHHHhcCCccHH----------------
Q ss_pred HHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 036560 272 LQAKAAAYYYHGLILDKGNEPSCHVSAVCCFLAAEEI 308 (420)
Q Consensus 272 ~~f~A~A~y~~~~~l~e~~~~~~~GeaIa~L~~A~~~ 308 (420)
|||+.|..+.. .++|-+|+..|+.|.+.
T Consensus 353 ------a~~~~g~a~~~---~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 353 ------GLYRRGEAQLL---MNEFESAKGDFEKVLEV 380 (457)
T ss_dssp ------HHHHHHHHHHH---TTCHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHH---ccCHHHHHHHHHHHHHh
No 31
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=21.34 E-value=5.7e+02 Score=24.86 Aligned_cols=12 Identities=17% Similarity=-0.100 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHh
Q 036560 160 KREAVDLLLKAS 171 (420)
Q Consensus 160 lK~A~~~fq~AA 171 (420)
..+|..+|++|-
T Consensus 153 ~~~A~~~~~~al 164 (474)
T 4abn_A 153 VTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456777776653
No 32
>2ko6_A Uncharacterized protein YIHD; alpha protein, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=21.32 E-value=39 Score=26.30 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=16.0
Q ss_pred eecCCCCCCCCCchHHHh
Q 036560 24 YVPAIRIPLQSDLPRALK 41 (420)
Q Consensus 24 ~iPglK~t~~vD~~~~L~ 41 (420)
.|||+|+--+-||+++|-
T Consensus 64 ~IPGlkKDye~DFKtAlL 81 (89)
T 2ko6_A 64 VIPGLQKDYEEDFKTALL 81 (89)
T ss_dssp SCSSCCCCCCCCHHHHHH
T ss_pred cCCccchhhHHHHHHHHH
Confidence 689999999999998863
Done!